Multiple sequence alignment - TraesCS4D01G206000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G206000 chr4D 100.000 4358 0 0 1 4358 353700179 353695822 0.000000e+00 8048.0
1 TraesCS4D01G206000 chr4B 97.170 3428 71 11 459 3862 437164871 437161446 0.000000e+00 5770.0
2 TraesCS4D01G206000 chr4B 90.261 421 32 7 3862 4277 437161495 437161079 3.830000e-150 542.0
3 TraesCS4D01G206000 chr4B 89.524 210 18 4 4 209 392650597 392650388 3.340000e-66 263.0
4 TraesCS4D01G206000 chr4B 88.462 208 19 4 4 207 416646231 416646437 3.370000e-61 246.0
5 TraesCS4D01G206000 chr4B 87.981 208 22 3 5 209 165265859 165266066 4.350000e-60 243.0
6 TraesCS4D01G206000 chr4B 92.771 83 6 0 4276 4358 437160919 437160837 2.130000e-23 121.0
7 TraesCS4D01G206000 chr4A 96.725 3328 98 9 1039 4358 111166200 111169524 0.000000e+00 5531.0
8 TraesCS4D01G206000 chr4A 95.025 603 20 6 458 1050 111165567 111166169 0.000000e+00 939.0
9 TraesCS4D01G206000 chr4A 93.878 49 3 0 3814 3862 111169031 111169079 1.680000e-09 75.0
10 TraesCS4D01G206000 chr1D 80.539 1002 192 2 1239 2240 410602607 410601609 0.000000e+00 767.0
11 TraesCS4D01G206000 chr1D 91.489 188 12 4 5 189 148662793 148662607 5.590000e-64 255.0
12 TraesCS4D01G206000 chr1B 79.940 1002 198 2 1239 2240 553451923 553450925 0.000000e+00 734.0
13 TraesCS4D01G206000 chr1A 79.341 1002 204 2 1239 2240 506855596 506854598 0.000000e+00 701.0
14 TraesCS4D01G206000 chr1A 87.879 99 10 2 208 305 33302188 33302091 9.900000e-22 115.0
15 TraesCS4D01G206000 chr6D 89.623 212 19 2 1 209 423087804 423088015 2.580000e-67 267.0
16 TraesCS4D01G206000 chr7B 88.995 209 20 3 4 209 93256675 93256467 5.590000e-64 255.0
17 TraesCS4D01G206000 chr7B 85.714 112 12 4 197 305 407704312 407704422 9.900000e-22 115.0
18 TraesCS4D01G206000 chr7B 91.765 85 4 3 208 290 747593666 747593583 9.900000e-22 115.0
19 TraesCS4D01G206000 chr7B 87.255 102 8 4 191 290 661996379 661996477 1.280000e-20 111.0
20 TraesCS4D01G206000 chr7B 83.133 83 14 0 289 371 93256468 93256386 4.670000e-10 76.8
21 TraesCS4D01G206000 chr2A 88.889 207 20 2 6 209 189607554 189607348 7.240000e-63 252.0
22 TraesCS4D01G206000 chr5D 88.462 208 21 2 5 209 36720299 36720506 9.360000e-62 248.0
23 TraesCS4D01G206000 chr5D 86.792 212 22 5 4 209 281859699 281859488 9.430000e-57 231.0
24 TraesCS4D01G206000 chr3D 92.857 84 5 1 208 290 192058757 192058840 2.130000e-23 121.0
25 TraesCS4D01G206000 chr7A 89.583 96 5 5 197 290 25522250 25522342 2.750000e-22 117.0
26 TraesCS4D01G206000 chr7A 90.805 87 6 2 206 290 25457356 25457442 9.900000e-22 115.0
27 TraesCS4D01G206000 chr7A 88.542 96 6 5 197 290 25545262 25545354 1.280000e-20 111.0
28 TraesCS4D01G206000 chr2D 90.698 86 7 1 208 292 207279621 207279536 3.560000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G206000 chr4D 353695822 353700179 4357 True 8048.000000 8048 100.000000 1 4358 1 chr4D.!!$R1 4357
1 TraesCS4D01G206000 chr4B 437160837 437164871 4034 True 2144.333333 5770 93.400667 459 4358 3 chr4B.!!$R2 3899
2 TraesCS4D01G206000 chr4A 111165567 111169524 3957 False 2181.666667 5531 95.209333 458 4358 3 chr4A.!!$F1 3900
3 TraesCS4D01G206000 chr1D 410601609 410602607 998 True 767.000000 767 80.539000 1239 2240 1 chr1D.!!$R2 1001
4 TraesCS4D01G206000 chr1B 553450925 553451923 998 True 734.000000 734 79.940000 1239 2240 1 chr1B.!!$R1 1001
5 TraesCS4D01G206000 chr1A 506854598 506855596 998 True 701.000000 701 79.341000 1239 2240 1 chr1A.!!$R2 1001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 385 0.028110 GCGCATTCAGAAATCCGGAC 59.972 55.0 6.12 0.0 0.0 4.79 F
394 395 0.035439 AAATCCGGACGAACATGGCT 60.035 50.0 6.12 0.0 0.0 4.75 F
395 396 0.462047 AATCCGGACGAACATGGCTC 60.462 55.0 6.12 0.0 0.0 4.70 F
399 400 0.744414 CGGACGAACATGGCTCCATT 60.744 55.0 0.00 0.0 33.9 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1312 1.618837 GGCTCATAGGTCGCCATCTTA 59.381 52.381 5.77 0.0 43.25 2.10 R
2085 2161 1.839994 CTCTGGTCATTGAAGGGCCTA 59.160 52.381 6.41 0.0 0.00 3.93 R
2265 2341 3.074538 AGTTATGCCTTTCAACTCCAGGT 59.925 43.478 0.00 0.0 0.00 4.00 R
3366 3442 3.708631 AGCTTATAGCAGACCTGTGTCAT 59.291 43.478 1.09 0.0 45.56 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.882671 ACGTGATTGGCATACTCATTTC 57.117 40.909 0.00 0.00 0.00 2.17
24 25 3.627577 ACGTGATTGGCATACTCATTTCC 59.372 43.478 0.00 0.00 0.00 3.13
25 26 3.627123 CGTGATTGGCATACTCATTTCCA 59.373 43.478 0.00 0.00 0.00 3.53
26 27 4.260907 CGTGATTGGCATACTCATTTCCAG 60.261 45.833 0.00 0.00 0.00 3.86
27 28 3.633525 TGATTGGCATACTCATTTCCAGC 59.366 43.478 0.00 0.00 0.00 4.85
28 29 3.370840 TTGGCATACTCATTTCCAGCT 57.629 42.857 0.00 0.00 0.00 4.24
29 30 3.370840 TGGCATACTCATTTCCAGCTT 57.629 42.857 0.00 0.00 0.00 3.74
30 31 3.282021 TGGCATACTCATTTCCAGCTTC 58.718 45.455 0.00 0.00 0.00 3.86
31 32 3.282021 GGCATACTCATTTCCAGCTTCA 58.718 45.455 0.00 0.00 0.00 3.02
32 33 3.314635 GGCATACTCATTTCCAGCTTCAG 59.685 47.826 0.00 0.00 0.00 3.02
33 34 3.314635 GCATACTCATTTCCAGCTTCAGG 59.685 47.826 0.00 0.00 0.00 3.86
34 35 4.774124 CATACTCATTTCCAGCTTCAGGA 58.226 43.478 0.00 0.00 0.00 3.86
35 36 5.374921 CATACTCATTTCCAGCTTCAGGAT 58.625 41.667 0.00 0.00 34.56 3.24
36 37 3.618351 ACTCATTTCCAGCTTCAGGATG 58.382 45.455 0.00 0.00 34.56 3.51
48 49 2.479566 TCAGGATGACTTGGTTGAGC 57.520 50.000 0.00 0.00 42.56 4.26
49 50 1.699083 TCAGGATGACTTGGTTGAGCA 59.301 47.619 0.00 0.00 42.56 4.26
50 51 2.306805 TCAGGATGACTTGGTTGAGCAT 59.693 45.455 0.00 0.00 42.56 3.79
51 52 3.519107 TCAGGATGACTTGGTTGAGCATA 59.481 43.478 0.00 0.00 42.56 3.14
52 53 4.164796 TCAGGATGACTTGGTTGAGCATAT 59.835 41.667 0.00 0.00 42.56 1.78
53 54 4.275196 CAGGATGACTTGGTTGAGCATATG 59.725 45.833 0.00 0.00 39.69 1.78
54 55 4.080129 AGGATGACTTGGTTGAGCATATGT 60.080 41.667 4.29 0.00 0.00 2.29
55 56 4.036027 GGATGACTTGGTTGAGCATATGTG 59.964 45.833 4.29 0.00 0.00 3.21
56 57 3.346315 TGACTTGGTTGAGCATATGTGG 58.654 45.455 4.29 0.00 0.00 4.17
57 58 3.008923 TGACTTGGTTGAGCATATGTGGA 59.991 43.478 4.29 0.00 0.00 4.02
58 59 3.347216 ACTTGGTTGAGCATATGTGGAC 58.653 45.455 4.29 0.00 0.00 4.02
59 60 3.009473 ACTTGGTTGAGCATATGTGGACT 59.991 43.478 4.29 0.00 0.00 3.85
60 61 3.266510 TGGTTGAGCATATGTGGACTC 57.733 47.619 4.29 3.05 0.00 3.36
61 62 2.571202 TGGTTGAGCATATGTGGACTCA 59.429 45.455 4.29 5.68 37.38 3.41
62 63 2.939103 GGTTGAGCATATGTGGACTCAC 59.061 50.000 9.48 6.32 38.81 3.51
63 64 2.584492 TGAGCATATGTGGACTCACG 57.416 50.000 4.29 0.00 46.42 4.35
64 65 1.212616 GAGCATATGTGGACTCACGC 58.787 55.000 4.29 0.00 46.42 5.34
65 66 0.826715 AGCATATGTGGACTCACGCT 59.173 50.000 4.29 0.00 46.42 5.07
66 67 0.933097 GCATATGTGGACTCACGCTG 59.067 55.000 4.29 0.00 46.42 5.18
67 68 1.575244 CATATGTGGACTCACGCTGG 58.425 55.000 0.00 0.00 46.42 4.85
68 69 0.179073 ATATGTGGACTCACGCTGGC 60.179 55.000 0.00 0.00 46.42 4.85
69 70 1.540435 TATGTGGACTCACGCTGGCA 61.540 55.000 0.00 0.00 46.42 4.92
70 71 2.280797 GTGGACTCACGCTGGCAA 60.281 61.111 0.00 0.00 33.87 4.52
71 72 2.280797 TGGACTCACGCTGGCAAC 60.281 61.111 0.00 0.00 0.00 4.17
72 73 3.050275 GGACTCACGCTGGCAACC 61.050 66.667 0.00 0.00 0.00 3.77
73 74 2.280797 GACTCACGCTGGCAACCA 60.281 61.111 0.00 0.00 0.00 3.67
86 87 4.920376 CTGGCAACCAGTAAATTTATCGG 58.080 43.478 5.43 12.14 45.82 4.18
87 88 4.337145 TGGCAACCAGTAAATTTATCGGT 58.663 39.130 13.16 13.16 0.00 4.69
88 89 4.767928 TGGCAACCAGTAAATTTATCGGTT 59.232 37.500 20.43 20.43 37.21 4.44
89 90 5.244178 TGGCAACCAGTAAATTTATCGGTTT 59.756 36.000 22.28 11.54 34.57 3.27
90 91 6.433404 TGGCAACCAGTAAATTTATCGGTTTA 59.567 34.615 22.28 13.78 34.57 2.01
91 92 7.039923 TGGCAACCAGTAAATTTATCGGTTTAA 60.040 33.333 22.28 13.16 34.57 1.52
92 93 7.977293 GGCAACCAGTAAATTTATCGGTTTAAT 59.023 33.333 22.28 7.76 34.57 1.40
93 94 9.361315 GCAACCAGTAAATTTATCGGTTTAATT 57.639 29.630 22.28 7.49 34.57 1.40
116 117 6.841443 TTTTTCATGCAAACACATTTCGAT 57.159 29.167 0.00 0.00 0.00 3.59
117 118 6.841443 TTTTCATGCAAACACATTTCGATT 57.159 29.167 0.00 0.00 0.00 3.34
118 119 5.825905 TTCATGCAAACACATTTCGATTG 57.174 34.783 0.00 0.00 0.00 2.67
119 120 4.236147 TCATGCAAACACATTTCGATTGG 58.764 39.130 0.00 0.00 0.00 3.16
120 121 3.023946 TGCAAACACATTTCGATTGGG 57.976 42.857 0.00 0.00 0.00 4.12
121 122 2.363680 TGCAAACACATTTCGATTGGGT 59.636 40.909 0.00 0.00 30.20 4.51
122 123 3.181471 TGCAAACACATTTCGATTGGGTT 60.181 39.130 9.93 9.93 42.36 4.11
123 124 3.184178 GCAAACACATTTCGATTGGGTTG 59.816 43.478 14.96 11.60 39.73 3.77
124 125 4.367450 CAAACACATTTCGATTGGGTTGT 58.633 39.130 14.96 5.51 39.73 3.32
125 126 5.524284 CAAACACATTTCGATTGGGTTGTA 58.476 37.500 14.96 0.00 39.73 2.41
126 127 5.975693 AACACATTTCGATTGGGTTGTAT 57.024 34.783 13.84 0.00 39.19 2.29
127 128 5.309323 ACACATTTCGATTGGGTTGTATG 57.691 39.130 0.00 0.00 0.00 2.39
128 129 5.007034 ACACATTTCGATTGGGTTGTATGA 58.993 37.500 0.00 0.00 0.00 2.15
129 130 5.106317 ACACATTTCGATTGGGTTGTATGAC 60.106 40.000 0.00 0.00 0.00 3.06
130 131 5.123820 CACATTTCGATTGGGTTGTATGACT 59.876 40.000 0.00 0.00 0.00 3.41
131 132 6.315144 CACATTTCGATTGGGTTGTATGACTA 59.685 38.462 0.00 0.00 0.00 2.59
132 133 7.012327 CACATTTCGATTGGGTTGTATGACTAT 59.988 37.037 0.00 0.00 0.00 2.12
133 134 7.556275 ACATTTCGATTGGGTTGTATGACTATT 59.444 33.333 0.00 0.00 0.00 1.73
134 135 7.931578 TTTCGATTGGGTTGTATGACTATTT 57.068 32.000 0.00 0.00 0.00 1.40
135 136 6.918892 TCGATTGGGTTGTATGACTATTTG 57.081 37.500 0.00 0.00 0.00 2.32
136 137 6.645306 TCGATTGGGTTGTATGACTATTTGA 58.355 36.000 0.00 0.00 0.00 2.69
137 138 7.279615 TCGATTGGGTTGTATGACTATTTGAT 58.720 34.615 0.00 0.00 0.00 2.57
138 139 8.425703 TCGATTGGGTTGTATGACTATTTGATA 58.574 33.333 0.00 0.00 0.00 2.15
139 140 9.219603 CGATTGGGTTGTATGACTATTTGATAT 57.780 33.333 0.00 0.00 0.00 1.63
142 143 9.693739 TTGGGTTGTATGACTATTTGATATTGT 57.306 29.630 0.00 0.00 0.00 2.71
143 144 9.693739 TGGGTTGTATGACTATTTGATATTGTT 57.306 29.630 0.00 0.00 0.00 2.83
162 163 9.936759 ATATTGTTTTTATTTCGATTGGGTTGT 57.063 25.926 0.00 0.00 0.00 3.32
164 165 9.765795 ATTGTTTTTATTTCGATTGGGTTGTAA 57.234 25.926 0.00 0.00 0.00 2.41
165 166 8.804688 TGTTTTTATTTCGATTGGGTTGTAAG 57.195 30.769 0.00 0.00 0.00 2.34
166 167 8.630917 TGTTTTTATTTCGATTGGGTTGTAAGA 58.369 29.630 0.00 0.00 0.00 2.10
167 168 8.908678 GTTTTTATTTCGATTGGGTTGTAAGAC 58.091 33.333 0.00 0.00 0.00 3.01
168 169 7.989416 TTTATTTCGATTGGGTTGTAAGACT 57.011 32.000 0.00 0.00 0.00 3.24
169 170 9.504708 TTTTATTTCGATTGGGTTGTAAGACTA 57.495 29.630 0.00 0.00 0.00 2.59
170 171 9.675464 TTTATTTCGATTGGGTTGTAAGACTAT 57.325 29.630 0.00 0.00 0.00 2.12
171 172 9.675464 TTATTTCGATTGGGTTGTAAGACTATT 57.325 29.630 0.00 0.00 0.00 1.73
172 173 7.989416 TTTCGATTGGGTTGTAAGACTATTT 57.011 32.000 0.00 0.00 0.00 1.40
173 174 7.605410 TTCGATTGGGTTGTAAGACTATTTC 57.395 36.000 0.00 0.00 0.00 2.17
174 175 5.808540 TCGATTGGGTTGTAAGACTATTTCG 59.191 40.000 0.00 0.00 0.00 3.46
175 176 5.808540 CGATTGGGTTGTAAGACTATTTCGA 59.191 40.000 0.00 0.00 0.00 3.71
176 177 6.311935 CGATTGGGTTGTAAGACTATTTCGAA 59.688 38.462 0.00 0.00 0.00 3.71
177 178 7.011109 CGATTGGGTTGTAAGACTATTTCGAAT 59.989 37.037 0.00 0.00 0.00 3.34
178 179 6.978343 TGGGTTGTAAGACTATTTCGAATG 57.022 37.500 0.00 0.00 0.00 2.67
179 180 6.469410 TGGGTTGTAAGACTATTTCGAATGT 58.531 36.000 0.00 0.00 0.00 2.71
180 181 6.370442 TGGGTTGTAAGACTATTTCGAATGTG 59.630 38.462 0.00 0.00 0.00 3.21
181 182 6.183360 GGGTTGTAAGACTATTTCGAATGTGG 60.183 42.308 0.00 0.00 0.00 4.17
182 183 6.592607 GGTTGTAAGACTATTTCGAATGTGGA 59.407 38.462 0.00 0.00 0.00 4.02
183 184 7.118680 GGTTGTAAGACTATTTCGAATGTGGAA 59.881 37.037 0.00 0.00 0.00 3.53
184 185 7.591006 TGTAAGACTATTTCGAATGTGGAAC 57.409 36.000 0.00 0.00 37.35 3.62
185 186 7.383687 TGTAAGACTATTTCGAATGTGGAACT 58.616 34.615 0.00 0.00 38.04 3.01
186 187 8.525316 TGTAAGACTATTTCGAATGTGGAACTA 58.475 33.333 0.00 0.00 38.04 2.24
187 188 9.530633 GTAAGACTATTTCGAATGTGGAACTAT 57.469 33.333 0.00 0.00 38.04 2.12
189 190 8.425577 AGACTATTTCGAATGTGGAACTATTG 57.574 34.615 0.00 0.00 38.04 1.90
190 191 7.011482 AGACTATTTCGAATGTGGAACTATTGC 59.989 37.037 0.00 0.00 38.04 3.56
191 192 6.823689 ACTATTTCGAATGTGGAACTATTGCT 59.176 34.615 0.00 0.00 38.04 3.91
192 193 7.985184 ACTATTTCGAATGTGGAACTATTGCTA 59.015 33.333 0.00 0.00 38.04 3.49
193 194 6.417191 TTTCGAATGTGGAACTATTGCTAC 57.583 37.500 0.00 0.00 38.04 3.58
194 195 4.109766 TCGAATGTGGAACTATTGCTACG 58.890 43.478 0.00 0.00 38.04 3.51
195 196 3.863424 CGAATGTGGAACTATTGCTACGT 59.137 43.478 0.00 0.00 38.04 3.57
196 197 4.328983 CGAATGTGGAACTATTGCTACGTT 59.671 41.667 0.00 0.00 38.04 3.99
197 198 5.163893 CGAATGTGGAACTATTGCTACGTTT 60.164 40.000 0.00 0.00 38.04 3.60
198 199 5.545658 ATGTGGAACTATTGCTACGTTTG 57.454 39.130 0.00 0.00 38.04 2.93
199 200 4.633175 TGTGGAACTATTGCTACGTTTGA 58.367 39.130 0.00 0.00 38.04 2.69
200 201 5.242434 TGTGGAACTATTGCTACGTTTGAT 58.758 37.500 0.00 0.00 38.04 2.57
201 202 5.703592 TGTGGAACTATTGCTACGTTTGATT 59.296 36.000 0.00 0.00 38.04 2.57
202 203 6.205853 TGTGGAACTATTGCTACGTTTGATTT 59.794 34.615 0.00 0.00 38.04 2.17
203 204 7.388224 TGTGGAACTATTGCTACGTTTGATTTA 59.612 33.333 0.00 0.00 38.04 1.40
204 205 8.231837 GTGGAACTATTGCTACGTTTGATTTAA 58.768 33.333 0.00 0.00 0.00 1.52
205 206 8.784994 TGGAACTATTGCTACGTTTGATTTAAA 58.215 29.630 0.00 0.00 0.00 1.52
206 207 9.058424 GGAACTATTGCTACGTTTGATTTAAAC 57.942 33.333 0.00 0.00 44.13 2.01
207 208 9.821662 GAACTATTGCTACGTTTGATTTAAACT 57.178 29.630 0.00 0.00 45.14 2.66
212 213 7.355332 TGCTACGTTTGATTTAAACTACTCC 57.645 36.000 0.00 0.00 45.14 3.85
213 214 6.369615 TGCTACGTTTGATTTAAACTACTCCC 59.630 38.462 0.00 0.00 45.14 4.30
214 215 6.592994 GCTACGTTTGATTTAAACTACTCCCT 59.407 38.462 0.00 0.00 45.14 4.20
215 216 7.118825 GCTACGTTTGATTTAAACTACTCCCTT 59.881 37.037 0.00 0.00 45.14 3.95
216 217 7.430992 ACGTTTGATTTAAACTACTCCCTTC 57.569 36.000 3.01 0.00 45.14 3.46
217 218 6.146673 ACGTTTGATTTAAACTACTCCCTTCG 59.853 38.462 3.01 0.00 45.14 3.79
218 219 6.146673 CGTTTGATTTAAACTACTCCCTTCGT 59.853 38.462 3.01 0.00 45.14 3.85
219 220 7.516481 GTTTGATTTAAACTACTCCCTTCGTC 58.484 38.462 0.00 0.00 44.18 4.20
220 221 5.727434 TGATTTAAACTACTCCCTTCGTCC 58.273 41.667 0.00 0.00 0.00 4.79
221 222 4.541973 TTTAAACTACTCCCTTCGTCCC 57.458 45.455 0.00 0.00 0.00 4.46
222 223 2.019807 AAACTACTCCCTTCGTCCCA 57.980 50.000 0.00 0.00 0.00 4.37
223 224 2.249309 AACTACTCCCTTCGTCCCAT 57.751 50.000 0.00 0.00 0.00 4.00
224 225 3.393426 AACTACTCCCTTCGTCCCATA 57.607 47.619 0.00 0.00 0.00 2.74
225 226 3.393426 ACTACTCCCTTCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
226 227 3.924922 ACTACTCCCTTCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
227 228 5.070823 ACTACTCCCTTCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
228 229 5.652324 ACTACTCCCTTCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
229 230 6.797707 ACTACTCCCTTCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
230 231 7.243824 ACTACTCCCTTCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
231 232 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
232 233 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
233 234 6.210984 ACTCCCTTCGTCCCATAATATAAGAC 59.789 42.308 0.00 0.00 0.00 3.01
234 235 6.079336 TCCCTTCGTCCCATAATATAAGACA 58.921 40.000 0.00 0.00 0.00 3.41
235 236 6.729100 TCCCTTCGTCCCATAATATAAGACAT 59.271 38.462 0.00 0.00 0.00 3.06
236 237 7.236847 TCCCTTCGTCCCATAATATAAGACATT 59.763 37.037 0.00 0.00 0.00 2.71
237 238 7.883311 CCCTTCGTCCCATAATATAAGACATTT 59.117 37.037 0.00 0.00 0.00 2.32
238 239 9.284968 CCTTCGTCCCATAATATAAGACATTTT 57.715 33.333 0.00 0.00 0.00 1.82
294 295 2.507407 TGGGACAAGGGAGTATTTGC 57.493 50.000 0.00 0.00 31.92 3.68
295 296 1.992557 TGGGACAAGGGAGTATTTGCT 59.007 47.619 0.00 0.00 31.92 3.91
296 297 3.186283 TGGGACAAGGGAGTATTTGCTA 58.814 45.455 0.00 0.00 31.92 3.49
297 298 3.785887 TGGGACAAGGGAGTATTTGCTAT 59.214 43.478 0.00 0.00 31.92 2.97
298 299 4.137543 GGGACAAGGGAGTATTTGCTATG 58.862 47.826 0.00 0.00 0.00 2.23
299 300 3.565902 GGACAAGGGAGTATTTGCTATGC 59.434 47.826 0.00 0.00 0.00 3.14
300 301 4.455606 GACAAGGGAGTATTTGCTATGCT 58.544 43.478 0.00 0.00 0.00 3.79
301 302 4.860022 ACAAGGGAGTATTTGCTATGCTT 58.140 39.130 0.00 0.00 0.00 3.91
302 303 4.884164 ACAAGGGAGTATTTGCTATGCTTC 59.116 41.667 0.00 0.00 0.00 3.86
303 304 4.778213 AGGGAGTATTTGCTATGCTTCA 57.222 40.909 0.00 0.00 0.00 3.02
304 305 5.316158 AGGGAGTATTTGCTATGCTTCAT 57.684 39.130 0.00 0.00 0.00 2.57
305 306 5.699143 AGGGAGTATTTGCTATGCTTCATT 58.301 37.500 0.00 0.00 0.00 2.57
306 307 6.131961 AGGGAGTATTTGCTATGCTTCATTT 58.868 36.000 0.00 0.00 0.00 2.32
307 308 6.608808 AGGGAGTATTTGCTATGCTTCATTTT 59.391 34.615 0.00 0.00 0.00 1.82
308 309 7.779798 AGGGAGTATTTGCTATGCTTCATTTTA 59.220 33.333 0.00 0.00 0.00 1.52
309 310 8.078596 GGGAGTATTTGCTATGCTTCATTTTAG 58.921 37.037 0.00 0.00 0.00 1.85
310 311 8.624776 GGAGTATTTGCTATGCTTCATTTTAGT 58.375 33.333 0.00 0.00 0.00 2.24
314 315 8.807667 ATTTGCTATGCTTCATTTTAGTATGC 57.192 30.769 0.00 0.00 0.00 3.14
315 316 7.572523 TTGCTATGCTTCATTTTAGTATGCT 57.427 32.000 0.00 0.00 0.00 3.79
316 317 7.572523 TGCTATGCTTCATTTTAGTATGCTT 57.427 32.000 0.00 0.00 0.00 3.91
317 318 7.420002 TGCTATGCTTCATTTTAGTATGCTTG 58.580 34.615 0.00 0.00 0.00 4.01
318 319 7.067372 TGCTATGCTTCATTTTAGTATGCTTGT 59.933 33.333 0.00 0.00 0.00 3.16
319 320 7.917505 GCTATGCTTCATTTTAGTATGCTTGTT 59.082 33.333 0.00 0.00 0.00 2.83
323 324 9.787532 TGCTTCATTTTAGTATGCTTGTTAATC 57.212 29.630 0.00 0.00 0.00 1.75
327 328 9.679661 TCATTTTAGTATGCTTGTTAATCTGGA 57.320 29.630 0.00 0.00 0.00 3.86
330 331 7.859325 TTAGTATGCTTGTTAATCTGGAACC 57.141 36.000 0.00 0.00 0.00 3.62
331 332 4.876107 AGTATGCTTGTTAATCTGGAACCG 59.124 41.667 0.00 0.00 0.00 4.44
332 333 3.410631 TGCTTGTTAATCTGGAACCGA 57.589 42.857 0.00 0.00 0.00 4.69
333 334 3.071479 TGCTTGTTAATCTGGAACCGAC 58.929 45.455 0.00 0.00 0.00 4.79
334 335 3.071479 GCTTGTTAATCTGGAACCGACA 58.929 45.455 0.00 0.00 0.00 4.35
335 336 3.500680 GCTTGTTAATCTGGAACCGACAA 59.499 43.478 0.00 0.00 0.00 3.18
336 337 4.378459 GCTTGTTAATCTGGAACCGACAAG 60.378 45.833 8.51 8.51 43.09 3.16
337 338 4.610605 TGTTAATCTGGAACCGACAAGA 57.389 40.909 0.00 0.00 0.00 3.02
338 339 5.160607 TGTTAATCTGGAACCGACAAGAT 57.839 39.130 0.00 0.00 0.00 2.40
339 340 4.935205 TGTTAATCTGGAACCGACAAGATG 59.065 41.667 0.00 0.00 0.00 2.90
340 341 2.029838 ATCTGGAACCGACAAGATGC 57.970 50.000 0.00 0.00 0.00 3.91
341 342 0.389817 TCTGGAACCGACAAGATGCG 60.390 55.000 0.00 0.00 0.00 4.73
347 348 4.812476 CGACAAGATGCGGCCGGA 62.812 66.667 29.38 27.51 0.00 5.14
348 349 2.435938 GACAAGATGCGGCCGGAA 60.436 61.111 27.18 0.00 0.00 4.30
349 350 1.819632 GACAAGATGCGGCCGGAAT 60.820 57.895 27.18 13.43 0.00 3.01
350 351 2.051804 GACAAGATGCGGCCGGAATG 62.052 60.000 27.18 24.26 0.00 2.67
351 352 2.114670 CAAGATGCGGCCGGAATGT 61.115 57.895 27.18 7.37 0.00 2.71
352 353 2.114670 AAGATGCGGCCGGAATGTG 61.115 57.895 27.18 0.00 0.00 3.21
353 354 2.513666 GATGCGGCCGGAATGTGA 60.514 61.111 27.18 0.00 0.00 3.58
354 355 2.823829 GATGCGGCCGGAATGTGAC 61.824 63.158 27.18 5.69 0.00 3.67
361 362 3.889227 CGGAATGTGACCGTGCAT 58.111 55.556 0.00 0.00 44.57 3.96
362 363 2.170738 CGGAATGTGACCGTGCATT 58.829 52.632 0.00 0.00 44.57 3.56
363 364 0.179192 CGGAATGTGACCGTGCATTG 60.179 55.000 0.00 0.00 44.57 2.82
364 365 0.171007 GGAATGTGACCGTGCATTGG 59.829 55.000 6.41 6.41 35.69 3.16
365 366 0.171007 GAATGTGACCGTGCATTGGG 59.829 55.000 12.06 6.40 35.69 4.12
366 367 1.876497 AATGTGACCGTGCATTGGGC 61.876 55.000 12.06 9.62 45.13 5.36
375 376 3.199551 GCATTGGGCGCATTCAGA 58.800 55.556 10.83 0.00 0.00 3.27
376 377 1.512230 GCATTGGGCGCATTCAGAA 59.488 52.632 10.83 0.00 0.00 3.02
377 378 0.108709 GCATTGGGCGCATTCAGAAA 60.109 50.000 10.83 0.00 0.00 2.52
378 379 1.472026 GCATTGGGCGCATTCAGAAAT 60.472 47.619 10.83 0.00 0.00 2.17
379 380 2.466846 CATTGGGCGCATTCAGAAATC 58.533 47.619 10.83 0.00 0.00 2.17
380 381 0.817013 TTGGGCGCATTCAGAAATCC 59.183 50.000 10.83 0.00 0.00 3.01
381 382 1.356624 GGGCGCATTCAGAAATCCG 59.643 57.895 10.83 0.00 0.00 4.18
382 383 1.356624 GGCGCATTCAGAAATCCGG 59.643 57.895 10.83 0.00 0.00 5.14
383 384 1.095228 GGCGCATTCAGAAATCCGGA 61.095 55.000 6.61 6.61 0.00 5.14
384 385 0.028110 GCGCATTCAGAAATCCGGAC 59.972 55.000 6.12 0.00 0.00 4.79
385 386 0.301687 CGCATTCAGAAATCCGGACG 59.698 55.000 6.12 0.00 0.00 4.79
386 387 1.651987 GCATTCAGAAATCCGGACGA 58.348 50.000 6.12 0.00 0.00 4.20
387 388 2.006888 GCATTCAGAAATCCGGACGAA 58.993 47.619 6.12 5.39 0.00 3.85
388 389 2.223044 GCATTCAGAAATCCGGACGAAC 60.223 50.000 6.12 0.00 0.00 3.95
389 390 2.823924 TTCAGAAATCCGGACGAACA 57.176 45.000 6.12 0.00 0.00 3.18
390 391 3.328382 TTCAGAAATCCGGACGAACAT 57.672 42.857 6.12 0.00 0.00 2.71
391 392 2.616960 TCAGAAATCCGGACGAACATG 58.383 47.619 6.12 1.12 0.00 3.21
392 393 1.665679 CAGAAATCCGGACGAACATGG 59.334 52.381 6.12 0.00 0.00 3.66
393 394 0.377203 GAAATCCGGACGAACATGGC 59.623 55.000 6.12 0.00 0.00 4.40
394 395 0.035439 AAATCCGGACGAACATGGCT 60.035 50.000 6.12 0.00 0.00 4.75
395 396 0.462047 AATCCGGACGAACATGGCTC 60.462 55.000 6.12 0.00 0.00 4.70
396 397 2.311688 ATCCGGACGAACATGGCTCC 62.312 60.000 6.12 0.00 0.00 4.70
397 398 2.264480 CGGACGAACATGGCTCCA 59.736 61.111 0.00 0.00 0.00 3.86
398 399 1.153369 CGGACGAACATGGCTCCAT 60.153 57.895 0.00 0.00 37.08 3.41
399 400 0.744414 CGGACGAACATGGCTCCATT 60.744 55.000 0.00 0.00 33.90 3.16
400 401 1.472552 CGGACGAACATGGCTCCATTA 60.473 52.381 0.00 0.00 33.90 1.90
401 402 2.639065 GGACGAACATGGCTCCATTAA 58.361 47.619 0.00 0.00 33.90 1.40
402 403 2.354821 GGACGAACATGGCTCCATTAAC 59.645 50.000 0.00 0.00 33.90 2.01
403 404 3.006940 GACGAACATGGCTCCATTAACA 58.993 45.455 0.00 0.00 33.90 2.41
404 405 3.620488 ACGAACATGGCTCCATTAACAT 58.380 40.909 0.00 0.00 33.90 2.71
405 406 4.016444 ACGAACATGGCTCCATTAACATT 58.984 39.130 0.00 0.00 33.90 2.71
406 407 5.189928 ACGAACATGGCTCCATTAACATTA 58.810 37.500 0.00 0.00 33.90 1.90
407 408 5.827797 ACGAACATGGCTCCATTAACATTAT 59.172 36.000 0.00 0.00 33.90 1.28
408 409 6.995686 ACGAACATGGCTCCATTAACATTATA 59.004 34.615 0.00 0.00 33.90 0.98
409 410 7.500892 ACGAACATGGCTCCATTAACATTATAA 59.499 33.333 0.00 0.00 33.90 0.98
410 411 8.349245 CGAACATGGCTCCATTAACATTATAAA 58.651 33.333 0.00 0.00 33.90 1.40
413 414 9.985730 ACATGGCTCCATTAACATTATAAAATG 57.014 29.630 0.00 0.00 40.42 2.32
433 434 7.839680 AAATGATGAAAAGTGGACTAAACCT 57.160 32.000 0.00 0.00 0.00 3.50
434 435 8.934023 AAATGATGAAAAGTGGACTAAACCTA 57.066 30.769 0.00 0.00 0.00 3.08
435 436 7.923414 ATGATGAAAAGTGGACTAAACCTAC 57.077 36.000 0.00 0.00 0.00 3.18
436 437 5.929992 TGATGAAAAGTGGACTAAACCTACG 59.070 40.000 0.00 0.00 0.00 3.51
437 438 5.280654 TGAAAAGTGGACTAAACCTACGT 57.719 39.130 0.00 0.00 0.00 3.57
438 439 5.291971 TGAAAAGTGGACTAAACCTACGTC 58.708 41.667 0.00 0.00 0.00 4.34
439 440 3.949842 AAGTGGACTAAACCTACGTCC 57.050 47.619 0.00 0.00 45.76 4.79
445 446 3.861689 GGACTAAACCTACGTCCAAATCG 59.138 47.826 0.00 0.00 45.08 3.34
446 447 4.488879 GACTAAACCTACGTCCAAATCGT 58.511 43.478 0.00 0.00 43.86 3.73
447 448 4.886579 ACTAAACCTACGTCCAAATCGTT 58.113 39.130 0.00 0.00 41.72 3.85
448 449 4.687483 ACTAAACCTACGTCCAAATCGTTG 59.313 41.667 0.00 0.00 41.72 4.10
579 596 1.569072 GGATCCTCTTTTAAGCCCCCA 59.431 52.381 3.84 0.00 0.00 4.96
580 597 2.024369 GGATCCTCTTTTAAGCCCCCAA 60.024 50.000 3.84 0.00 0.00 4.12
581 598 2.597578 TCCTCTTTTAAGCCCCCAAC 57.402 50.000 0.00 0.00 0.00 3.77
582 599 1.076513 TCCTCTTTTAAGCCCCCAACC 59.923 52.381 0.00 0.00 0.00 3.77
583 600 1.557099 CTCTTTTAAGCCCCCAACCC 58.443 55.000 0.00 0.00 0.00 4.11
584 601 0.861155 TCTTTTAAGCCCCCAACCCA 59.139 50.000 0.00 0.00 0.00 4.51
585 602 1.435168 TCTTTTAAGCCCCCAACCCAT 59.565 47.619 0.00 0.00 0.00 4.00
647 664 4.179599 CTCCCTCCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
897 915 5.121221 GAAGAATTCGGTTGTGGTTTCAT 57.879 39.130 0.00 0.00 34.17 2.57
954 972 4.916293 GCGATGATGGGCGCCTGA 62.916 66.667 28.56 14.27 46.93 3.86
1063 1135 6.780901 ACTACTACTACATAGCCTGCTGATA 58.219 40.000 0.97 0.00 33.73 2.15
1067 1139 3.900601 ACTACATAGCCTGCTGATAGCTT 59.099 43.478 0.97 0.00 42.97 3.74
1219 1295 7.361713 GCACATTAATAACACTAGCAGGTTTGA 60.362 37.037 0.00 0.00 0.00 2.69
1236 1312 6.040166 CAGGTTTGAATATCTATTTGCAGGCT 59.960 38.462 0.00 0.00 0.00 4.58
1347 1423 5.911752 AGCTATCCTCACTACAAGATTGTG 58.088 41.667 8.46 1.82 42.31 3.33
1599 1675 3.257933 CTTGAGGCGTGCAAGGTC 58.742 61.111 0.79 0.00 39.18 3.85
2085 2161 3.261897 AGGTCATCAGGTTTGTCGAGAAT 59.738 43.478 0.00 0.00 0.00 2.40
2352 2428 4.679662 CCAAGGAATGTAGTACAGTACCG 58.320 47.826 9.33 1.61 24.25 4.02
2782 2858 2.370849 GAGGAGGACACACCCAACTTTA 59.629 50.000 0.00 0.00 40.05 1.85
3392 3468 5.848406 ACACAGGTCTGCTATAAGCTATTC 58.152 41.667 0.03 0.00 42.97 1.75
3393 3469 5.600484 ACACAGGTCTGCTATAAGCTATTCT 59.400 40.000 0.03 0.00 42.97 2.40
3394 3470 6.778069 ACACAGGTCTGCTATAAGCTATTCTA 59.222 38.462 0.03 0.00 42.97 2.10
3395 3471 7.453126 ACACAGGTCTGCTATAAGCTATTCTAT 59.547 37.037 0.03 0.00 42.97 1.98
3637 3715 2.719046 GTGCATTCTGTTTACGTGTTGC 59.281 45.455 0.00 0.00 0.00 4.17
3679 3757 4.713553 TGAAGTTTGTATTGGCAGACTCA 58.286 39.130 3.66 0.00 33.46 3.41
3685 3763 6.204882 AGTTTGTATTGGCAGACTCAACTTAC 59.795 38.462 10.95 3.43 29.27 2.34
3856 3936 6.636044 GCTGAAATATTTGCTTGCAGTAGATC 59.364 38.462 5.17 0.00 0.00 2.75
3868 3948 6.147821 GCTTGCAGTAGATCAGTTTGACTTTA 59.852 38.462 0.00 0.00 0.00 1.85
3872 3952 6.035542 GCAGTAGATCAGTTTGACTTTAGAGC 59.964 42.308 0.00 0.00 0.00 4.09
3880 3960 5.237127 CAGTTTGACTTTAGAGCATCACACA 59.763 40.000 0.00 0.00 37.82 3.72
3969 4050 4.218200 TGTCTTGCTCCACAAACATAATGG 59.782 41.667 0.00 0.00 37.96 3.16
3986 4067 7.394016 ACATAATGGTCATACTGACTGTTTCA 58.606 34.615 7.17 0.00 46.19 2.69
3987 4068 7.334421 ACATAATGGTCATACTGACTGTTTCAC 59.666 37.037 7.17 0.00 46.19 3.18
4004 4085 1.137513 CACGAGTTCGAGGTTTCCAC 58.862 55.000 8.72 0.00 43.02 4.02
4014 4095 3.071023 TCGAGGTTTCCACAGATCTGTTT 59.929 43.478 25.84 2.40 42.83 2.83
4017 4098 5.566826 CGAGGTTTCCACAGATCTGTTTCTA 60.567 44.000 25.84 9.26 42.83 2.10
4077 4158 2.033424 GCGCTTGAAACCTCTCTTGTTT 59.967 45.455 0.00 0.00 38.57 2.83
4131 4215 2.469516 GGGCTATGTTTGGTCGCGG 61.470 63.158 6.13 0.00 0.00 6.46
4228 4312 1.080569 CACCATTTGGCACTTCGGC 60.081 57.895 0.00 0.00 39.32 5.54
4305 4551 1.683917 ACGAGACAGTCTTCAACAGCT 59.316 47.619 4.05 0.00 0.00 4.24
4328 4574 0.743097 GCAGATTCACCAGGCAATCC 59.257 55.000 7.78 0.00 30.41 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.470098 GGAAATGAGTATGCCAATCACGTAT 59.530 40.000 0.00 0.00 0.00 3.06
1 2 4.814234 GGAAATGAGTATGCCAATCACGTA 59.186 41.667 0.00 0.00 0.00 3.57
2 3 3.627577 GGAAATGAGTATGCCAATCACGT 59.372 43.478 0.00 0.00 0.00 4.49
3 4 3.627123 TGGAAATGAGTATGCCAATCACG 59.373 43.478 0.00 0.00 0.00 4.35
4 5 4.498682 GCTGGAAATGAGTATGCCAATCAC 60.499 45.833 0.00 0.00 0.00 3.06
5 6 3.633525 GCTGGAAATGAGTATGCCAATCA 59.366 43.478 0.00 0.00 0.00 2.57
6 7 3.887716 AGCTGGAAATGAGTATGCCAATC 59.112 43.478 0.00 0.00 0.00 2.67
7 8 3.907221 AGCTGGAAATGAGTATGCCAAT 58.093 40.909 0.00 0.00 0.00 3.16
8 9 3.370840 AGCTGGAAATGAGTATGCCAA 57.629 42.857 0.00 0.00 0.00 4.52
9 10 3.282021 GAAGCTGGAAATGAGTATGCCA 58.718 45.455 0.00 0.00 0.00 4.92
10 11 3.282021 TGAAGCTGGAAATGAGTATGCC 58.718 45.455 0.00 0.00 0.00 4.40
11 12 3.314635 CCTGAAGCTGGAAATGAGTATGC 59.685 47.826 0.00 0.00 0.00 3.14
12 13 4.774124 TCCTGAAGCTGGAAATGAGTATG 58.226 43.478 0.00 0.00 0.00 2.39
13 14 5.131642 TCATCCTGAAGCTGGAAATGAGTAT 59.868 40.000 0.00 0.00 35.24 2.12
14 15 4.471025 TCATCCTGAAGCTGGAAATGAGTA 59.529 41.667 0.00 0.00 35.24 2.59
15 16 3.265221 TCATCCTGAAGCTGGAAATGAGT 59.735 43.478 0.00 0.00 35.24 3.41
16 17 3.626670 GTCATCCTGAAGCTGGAAATGAG 59.373 47.826 0.00 0.00 35.24 2.90
17 18 3.265221 AGTCATCCTGAAGCTGGAAATGA 59.735 43.478 0.00 0.00 35.24 2.57
18 19 3.618351 AGTCATCCTGAAGCTGGAAATG 58.382 45.455 0.00 0.00 35.24 2.32
19 20 4.015084 CAAGTCATCCTGAAGCTGGAAAT 58.985 43.478 0.00 0.00 35.24 2.17
20 21 3.415212 CAAGTCATCCTGAAGCTGGAAA 58.585 45.455 0.00 0.00 35.24 3.13
21 22 2.290514 CCAAGTCATCCTGAAGCTGGAA 60.291 50.000 0.00 0.00 35.24 3.53
22 23 1.280133 CCAAGTCATCCTGAAGCTGGA 59.720 52.381 0.00 0.00 36.01 3.86
23 24 1.004044 ACCAAGTCATCCTGAAGCTGG 59.996 52.381 0.00 0.00 31.56 4.85
24 25 2.486472 ACCAAGTCATCCTGAAGCTG 57.514 50.000 0.00 0.00 0.00 4.24
25 26 2.373169 TCAACCAAGTCATCCTGAAGCT 59.627 45.455 0.00 0.00 0.00 3.74
26 27 2.746362 CTCAACCAAGTCATCCTGAAGC 59.254 50.000 0.00 0.00 0.00 3.86
27 28 2.746362 GCTCAACCAAGTCATCCTGAAG 59.254 50.000 0.00 0.00 0.00 3.02
28 29 2.106338 TGCTCAACCAAGTCATCCTGAA 59.894 45.455 0.00 0.00 0.00 3.02
29 30 1.699083 TGCTCAACCAAGTCATCCTGA 59.301 47.619 0.00 0.00 0.00 3.86
30 31 2.189594 TGCTCAACCAAGTCATCCTG 57.810 50.000 0.00 0.00 0.00 3.86
31 32 4.080129 ACATATGCTCAACCAAGTCATCCT 60.080 41.667 1.58 0.00 0.00 3.24
32 33 4.036027 CACATATGCTCAACCAAGTCATCC 59.964 45.833 1.58 0.00 0.00 3.51
33 34 4.036027 CCACATATGCTCAACCAAGTCATC 59.964 45.833 1.58 0.00 0.00 2.92
34 35 3.949754 CCACATATGCTCAACCAAGTCAT 59.050 43.478 1.58 0.00 0.00 3.06
35 36 3.008923 TCCACATATGCTCAACCAAGTCA 59.991 43.478 1.58 0.00 0.00 3.41
36 37 3.375299 GTCCACATATGCTCAACCAAGTC 59.625 47.826 1.58 0.00 0.00 3.01
37 38 3.009473 AGTCCACATATGCTCAACCAAGT 59.991 43.478 1.58 0.00 0.00 3.16
38 39 3.614092 AGTCCACATATGCTCAACCAAG 58.386 45.455 1.58 0.00 0.00 3.61
39 40 3.008923 TGAGTCCACATATGCTCAACCAA 59.991 43.478 1.58 0.00 35.36 3.67
40 41 2.571202 TGAGTCCACATATGCTCAACCA 59.429 45.455 1.58 0.00 35.36 3.67
41 42 2.939103 GTGAGTCCACATATGCTCAACC 59.061 50.000 11.03 0.00 42.72 3.77
42 43 2.604914 CGTGAGTCCACATATGCTCAAC 59.395 50.000 11.03 2.23 43.34 3.18
43 44 2.892374 CGTGAGTCCACATATGCTCAA 58.108 47.619 11.03 0.00 43.34 3.02
44 45 1.471501 GCGTGAGTCCACATATGCTCA 60.472 52.381 1.58 4.69 43.34 4.26
45 46 1.202463 AGCGTGAGTCCACATATGCTC 60.202 52.381 1.58 1.94 43.34 4.26
46 47 0.826715 AGCGTGAGTCCACATATGCT 59.173 50.000 1.58 0.00 43.34 3.79
47 48 0.933097 CAGCGTGAGTCCACATATGC 59.067 55.000 1.58 0.00 43.34 3.14
48 49 1.575244 CCAGCGTGAGTCCACATATG 58.425 55.000 0.00 0.00 43.34 1.78
49 50 0.179073 GCCAGCGTGAGTCCACATAT 60.179 55.000 0.00 0.00 43.34 1.78
50 51 1.218047 GCCAGCGTGAGTCCACATA 59.782 57.895 0.00 0.00 43.34 2.29
51 52 2.046892 GCCAGCGTGAGTCCACAT 60.047 61.111 0.00 0.00 43.34 3.21
52 53 3.100503 TTGCCAGCGTGAGTCCACA 62.101 57.895 0.00 0.00 43.34 4.17
53 54 2.280797 TTGCCAGCGTGAGTCCAC 60.281 61.111 0.00 0.00 39.86 4.02
54 55 2.280797 GTTGCCAGCGTGAGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
55 56 3.050275 GGTTGCCAGCGTGAGTCC 61.050 66.667 0.00 0.00 0.00 3.85
56 57 2.280797 TGGTTGCCAGCGTGAGTC 60.281 61.111 0.00 0.00 0.00 3.36
57 58 2.281070 CTGGTTGCCAGCGTGAGT 60.281 61.111 1.93 0.00 45.13 3.41
65 66 4.337145 ACCGATAAATTTACTGGTTGCCA 58.663 39.130 14.50 0.00 0.00 4.92
66 67 4.976224 ACCGATAAATTTACTGGTTGCC 57.024 40.909 14.50 0.00 0.00 4.52
67 68 8.920509 ATTAAACCGATAAATTTACTGGTTGC 57.079 30.769 25.34 2.98 39.50 4.17
93 94 6.841443 ATCGAAATGTGTTTGCATGAAAAA 57.159 29.167 0.00 0.00 0.00 1.94
94 95 6.292757 CCAATCGAAATGTGTTTGCATGAAAA 60.293 34.615 0.00 0.00 0.00 2.29
95 96 5.177142 CCAATCGAAATGTGTTTGCATGAAA 59.823 36.000 0.00 0.00 0.00 2.69
96 97 4.685165 CCAATCGAAATGTGTTTGCATGAA 59.315 37.500 0.00 0.00 0.00 2.57
97 98 4.236147 CCAATCGAAATGTGTTTGCATGA 58.764 39.130 0.00 0.00 0.00 3.07
98 99 3.368539 CCCAATCGAAATGTGTTTGCATG 59.631 43.478 0.00 0.00 0.00 4.06
99 100 3.006752 ACCCAATCGAAATGTGTTTGCAT 59.993 39.130 0.00 0.00 0.00 3.96
100 101 2.363680 ACCCAATCGAAATGTGTTTGCA 59.636 40.909 0.00 0.00 0.00 4.08
101 102 3.025287 ACCCAATCGAAATGTGTTTGC 57.975 42.857 0.00 0.00 0.00 3.68
102 103 4.367450 ACAACCCAATCGAAATGTGTTTG 58.633 39.130 0.00 0.00 0.00 2.93
103 104 4.664150 ACAACCCAATCGAAATGTGTTT 57.336 36.364 0.00 0.00 0.00 2.83
104 105 5.475220 TCATACAACCCAATCGAAATGTGTT 59.525 36.000 0.00 0.00 0.00 3.32
105 106 5.007034 TCATACAACCCAATCGAAATGTGT 58.993 37.500 0.00 0.00 0.00 3.72
106 107 5.123820 AGTCATACAACCCAATCGAAATGTG 59.876 40.000 0.00 0.00 0.00 3.21
107 108 5.253330 AGTCATACAACCCAATCGAAATGT 58.747 37.500 0.00 0.00 0.00 2.71
108 109 5.818136 AGTCATACAACCCAATCGAAATG 57.182 39.130 0.00 0.00 0.00 2.32
109 110 8.405531 CAAATAGTCATACAACCCAATCGAAAT 58.594 33.333 0.00 0.00 0.00 2.17
110 111 7.608376 TCAAATAGTCATACAACCCAATCGAAA 59.392 33.333 0.00 0.00 0.00 3.46
111 112 7.106890 TCAAATAGTCATACAACCCAATCGAA 58.893 34.615 0.00 0.00 0.00 3.71
112 113 6.645306 TCAAATAGTCATACAACCCAATCGA 58.355 36.000 0.00 0.00 0.00 3.59
113 114 6.918892 TCAAATAGTCATACAACCCAATCG 57.081 37.500 0.00 0.00 0.00 3.34
116 117 9.693739 ACAATATCAAATAGTCATACAACCCAA 57.306 29.630 0.00 0.00 0.00 4.12
117 118 9.693739 AACAATATCAAATAGTCATACAACCCA 57.306 29.630 0.00 0.00 0.00 4.51
136 137 9.936759 ACAACCCAATCGAAATAAAAACAATAT 57.063 25.926 0.00 0.00 0.00 1.28
138 139 9.765795 TTACAACCCAATCGAAATAAAAACAAT 57.234 25.926 0.00 0.00 0.00 2.71
139 140 9.250624 CTTACAACCCAATCGAAATAAAAACAA 57.749 29.630 0.00 0.00 0.00 2.83
140 141 8.630917 TCTTACAACCCAATCGAAATAAAAACA 58.369 29.630 0.00 0.00 0.00 2.83
141 142 8.908678 GTCTTACAACCCAATCGAAATAAAAAC 58.091 33.333 0.00 0.00 0.00 2.43
142 143 8.852135 AGTCTTACAACCCAATCGAAATAAAAA 58.148 29.630 0.00 0.00 0.00 1.94
143 144 8.398878 AGTCTTACAACCCAATCGAAATAAAA 57.601 30.769 0.00 0.00 0.00 1.52
144 145 7.989416 AGTCTTACAACCCAATCGAAATAAA 57.011 32.000 0.00 0.00 0.00 1.40
145 146 9.675464 AATAGTCTTACAACCCAATCGAAATAA 57.325 29.630 0.00 0.00 0.00 1.40
146 147 9.675464 AAATAGTCTTACAACCCAATCGAAATA 57.325 29.630 0.00 0.00 0.00 1.40
147 148 8.575649 AAATAGTCTTACAACCCAATCGAAAT 57.424 30.769 0.00 0.00 0.00 2.17
148 149 7.148540 CGAAATAGTCTTACAACCCAATCGAAA 60.149 37.037 0.00 0.00 0.00 3.46
149 150 6.311935 CGAAATAGTCTTACAACCCAATCGAA 59.688 38.462 0.00 0.00 0.00 3.71
150 151 5.808540 CGAAATAGTCTTACAACCCAATCGA 59.191 40.000 0.00 0.00 0.00 3.59
151 152 5.808540 TCGAAATAGTCTTACAACCCAATCG 59.191 40.000 0.00 0.00 0.00 3.34
152 153 7.605410 TTCGAAATAGTCTTACAACCCAATC 57.395 36.000 0.00 0.00 0.00 2.67
153 154 7.610305 ACATTCGAAATAGTCTTACAACCCAAT 59.390 33.333 0.00 0.00 0.00 3.16
154 155 6.938030 ACATTCGAAATAGTCTTACAACCCAA 59.062 34.615 0.00 0.00 0.00 4.12
155 156 6.370442 CACATTCGAAATAGTCTTACAACCCA 59.630 38.462 0.00 0.00 0.00 4.51
156 157 6.183360 CCACATTCGAAATAGTCTTACAACCC 60.183 42.308 0.00 0.00 0.00 4.11
157 158 6.592607 TCCACATTCGAAATAGTCTTACAACC 59.407 38.462 0.00 0.00 0.00 3.77
158 159 7.591006 TCCACATTCGAAATAGTCTTACAAC 57.409 36.000 0.00 0.00 0.00 3.32
159 160 7.876068 AGTTCCACATTCGAAATAGTCTTACAA 59.124 33.333 0.00 0.00 0.00 2.41
160 161 7.383687 AGTTCCACATTCGAAATAGTCTTACA 58.616 34.615 0.00 0.00 0.00 2.41
161 162 7.829378 AGTTCCACATTCGAAATAGTCTTAC 57.171 36.000 0.00 0.00 0.00 2.34
163 164 8.883731 CAATAGTTCCACATTCGAAATAGTCTT 58.116 33.333 0.00 0.00 0.00 3.01
164 165 7.011482 GCAATAGTTCCACATTCGAAATAGTCT 59.989 37.037 0.00 0.00 0.00 3.24
165 166 7.011482 AGCAATAGTTCCACATTCGAAATAGTC 59.989 37.037 0.00 0.00 0.00 2.59
166 167 6.823689 AGCAATAGTTCCACATTCGAAATAGT 59.176 34.615 0.00 0.00 0.00 2.12
167 168 7.251704 AGCAATAGTTCCACATTCGAAATAG 57.748 36.000 0.00 0.00 0.00 1.73
168 169 7.042992 CGTAGCAATAGTTCCACATTCGAAATA 60.043 37.037 0.00 0.00 0.00 1.40
169 170 6.238103 CGTAGCAATAGTTCCACATTCGAAAT 60.238 38.462 0.00 0.00 0.00 2.17
170 171 5.062934 CGTAGCAATAGTTCCACATTCGAAA 59.937 40.000 0.00 0.00 0.00 3.46
171 172 4.565166 CGTAGCAATAGTTCCACATTCGAA 59.435 41.667 0.00 0.00 0.00 3.71
172 173 4.109766 CGTAGCAATAGTTCCACATTCGA 58.890 43.478 0.00 0.00 0.00 3.71
173 174 3.863424 ACGTAGCAATAGTTCCACATTCG 59.137 43.478 0.00 0.00 0.00 3.34
174 175 5.796350 AACGTAGCAATAGTTCCACATTC 57.204 39.130 0.00 0.00 0.00 2.67
175 176 5.703592 TCAAACGTAGCAATAGTTCCACATT 59.296 36.000 0.00 0.00 0.00 2.71
176 177 5.242434 TCAAACGTAGCAATAGTTCCACAT 58.758 37.500 0.00 0.00 0.00 3.21
177 178 4.633175 TCAAACGTAGCAATAGTTCCACA 58.367 39.130 0.00 0.00 0.00 4.17
178 179 5.796350 ATCAAACGTAGCAATAGTTCCAC 57.204 39.130 0.00 0.00 0.00 4.02
179 180 6.811253 AAATCAAACGTAGCAATAGTTCCA 57.189 33.333 0.00 0.00 0.00 3.53
180 181 9.058424 GTTTAAATCAAACGTAGCAATAGTTCC 57.942 33.333 0.00 0.00 37.38 3.62
194 195 7.360691 GGACGAAGGGAGTAGTTTAAATCAAAC 60.361 40.741 0.00 0.00 45.85 2.93
195 196 6.652062 GGACGAAGGGAGTAGTTTAAATCAAA 59.348 38.462 0.00 0.00 0.00 2.69
196 197 6.168389 GGACGAAGGGAGTAGTTTAAATCAA 58.832 40.000 0.00 0.00 0.00 2.57
197 198 5.337813 GGGACGAAGGGAGTAGTTTAAATCA 60.338 44.000 0.00 0.00 0.00 2.57
198 199 5.114780 GGGACGAAGGGAGTAGTTTAAATC 58.885 45.833 0.00 0.00 0.00 2.17
199 200 4.533311 TGGGACGAAGGGAGTAGTTTAAAT 59.467 41.667 0.00 0.00 0.00 1.40
200 201 3.903090 TGGGACGAAGGGAGTAGTTTAAA 59.097 43.478 0.00 0.00 0.00 1.52
201 202 3.509442 TGGGACGAAGGGAGTAGTTTAA 58.491 45.455 0.00 0.00 0.00 1.52
202 203 3.173953 TGGGACGAAGGGAGTAGTTTA 57.826 47.619 0.00 0.00 0.00 2.01
203 204 2.019807 TGGGACGAAGGGAGTAGTTT 57.980 50.000 0.00 0.00 0.00 2.66
204 205 2.249309 ATGGGACGAAGGGAGTAGTT 57.751 50.000 0.00 0.00 0.00 2.24
205 206 3.393426 TTATGGGACGAAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
206 207 7.614583 TCTTATATTATGGGACGAAGGGAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
207 208 7.395489 GTCTTATATTATGGGACGAAGGGAGTA 59.605 40.741 0.00 0.00 0.00 2.59
208 209 6.210984 GTCTTATATTATGGGACGAAGGGAGT 59.789 42.308 0.00 0.00 0.00 3.85
209 210 6.210784 TGTCTTATATTATGGGACGAAGGGAG 59.789 42.308 0.00 0.00 0.00 4.30
210 211 6.079336 TGTCTTATATTATGGGACGAAGGGA 58.921 40.000 0.00 0.00 0.00 4.20
211 212 6.354794 TGTCTTATATTATGGGACGAAGGG 57.645 41.667 0.00 0.00 0.00 3.95
212 213 8.848474 AAATGTCTTATATTATGGGACGAAGG 57.152 34.615 0.00 0.00 0.00 3.46
259 260 7.178451 CCCTTGTCCCATAATGTAAGACTTTTT 59.822 37.037 0.00 0.00 0.00 1.94
260 261 6.663523 CCCTTGTCCCATAATGTAAGACTTTT 59.336 38.462 0.00 0.00 0.00 2.27
261 262 6.011981 TCCCTTGTCCCATAATGTAAGACTTT 60.012 38.462 0.00 0.00 0.00 2.66
262 263 5.491078 TCCCTTGTCCCATAATGTAAGACTT 59.509 40.000 0.00 0.00 0.00 3.01
263 264 5.036916 TCCCTTGTCCCATAATGTAAGACT 58.963 41.667 0.00 0.00 0.00 3.24
264 265 5.104485 ACTCCCTTGTCCCATAATGTAAGAC 60.104 44.000 0.00 0.00 0.00 3.01
265 266 5.036916 ACTCCCTTGTCCCATAATGTAAGA 58.963 41.667 0.00 0.00 0.00 2.10
266 267 5.373812 ACTCCCTTGTCCCATAATGTAAG 57.626 43.478 0.00 0.00 0.00 2.34
267 268 7.460214 AATACTCCCTTGTCCCATAATGTAA 57.540 36.000 0.00 0.00 0.00 2.41
268 269 7.287061 CAAATACTCCCTTGTCCCATAATGTA 58.713 38.462 0.00 0.00 0.00 2.29
269 270 5.994416 AATACTCCCTTGTCCCATAATGT 57.006 39.130 0.00 0.00 0.00 2.71
270 271 5.010012 GCAAATACTCCCTTGTCCCATAATG 59.990 44.000 0.00 0.00 0.00 1.90
271 272 5.103515 AGCAAATACTCCCTTGTCCCATAAT 60.104 40.000 0.00 0.00 0.00 1.28
272 273 4.229582 AGCAAATACTCCCTTGTCCCATAA 59.770 41.667 0.00 0.00 0.00 1.90
273 274 3.785887 AGCAAATACTCCCTTGTCCCATA 59.214 43.478 0.00 0.00 0.00 2.74
274 275 2.582636 AGCAAATACTCCCTTGTCCCAT 59.417 45.455 0.00 0.00 0.00 4.00
275 276 1.992557 AGCAAATACTCCCTTGTCCCA 59.007 47.619 0.00 0.00 0.00 4.37
276 277 2.808906 AGCAAATACTCCCTTGTCCC 57.191 50.000 0.00 0.00 0.00 4.46
277 278 3.565902 GCATAGCAAATACTCCCTTGTCC 59.434 47.826 0.00 0.00 0.00 4.02
278 279 4.455606 AGCATAGCAAATACTCCCTTGTC 58.544 43.478 0.00 0.00 0.00 3.18
279 280 4.510167 AGCATAGCAAATACTCCCTTGT 57.490 40.909 0.00 0.00 0.00 3.16
280 281 4.883585 TGAAGCATAGCAAATACTCCCTTG 59.116 41.667 0.00 0.00 0.00 3.61
281 282 5.116084 TGAAGCATAGCAAATACTCCCTT 57.884 39.130 0.00 0.00 0.00 3.95
282 283 4.778213 TGAAGCATAGCAAATACTCCCT 57.222 40.909 0.00 0.00 0.00 4.20
283 284 6.396829 AAATGAAGCATAGCAAATACTCCC 57.603 37.500 0.00 0.00 0.00 4.30
284 285 8.624776 ACTAAAATGAAGCATAGCAAATACTCC 58.375 33.333 0.00 0.00 0.00 3.85
288 289 9.897744 GCATACTAAAATGAAGCATAGCAAATA 57.102 29.630 0.00 0.00 0.00 1.40
289 290 8.636213 AGCATACTAAAATGAAGCATAGCAAAT 58.364 29.630 0.00 0.00 0.00 2.32
290 291 7.999679 AGCATACTAAAATGAAGCATAGCAAA 58.000 30.769 0.00 0.00 0.00 3.68
291 292 7.572523 AGCATACTAAAATGAAGCATAGCAA 57.427 32.000 0.00 0.00 0.00 3.91
292 293 7.067372 ACAAGCATACTAAAATGAAGCATAGCA 59.933 33.333 0.00 0.00 0.00 3.49
293 294 7.420800 ACAAGCATACTAAAATGAAGCATAGC 58.579 34.615 0.00 0.00 0.00 2.97
297 298 9.787532 GATTAACAAGCATACTAAAATGAAGCA 57.212 29.630 0.00 0.00 0.00 3.91
301 302 9.679661 TCCAGATTAACAAGCATACTAAAATGA 57.320 29.630 0.00 0.00 0.00 2.57
304 305 8.736244 GGTTCCAGATTAACAAGCATACTAAAA 58.264 33.333 0.00 0.00 0.00 1.52
305 306 7.065324 CGGTTCCAGATTAACAAGCATACTAAA 59.935 37.037 0.00 0.00 0.00 1.85
306 307 6.537301 CGGTTCCAGATTAACAAGCATACTAA 59.463 38.462 0.00 0.00 0.00 2.24
307 308 6.046593 CGGTTCCAGATTAACAAGCATACTA 58.953 40.000 0.00 0.00 0.00 1.82
308 309 4.876107 CGGTTCCAGATTAACAAGCATACT 59.124 41.667 0.00 0.00 0.00 2.12
309 310 4.873827 TCGGTTCCAGATTAACAAGCATAC 59.126 41.667 0.00 0.00 0.00 2.39
310 311 4.873827 GTCGGTTCCAGATTAACAAGCATA 59.126 41.667 0.00 0.00 0.00 3.14
311 312 3.689649 GTCGGTTCCAGATTAACAAGCAT 59.310 43.478 0.00 0.00 0.00 3.79
312 313 3.071479 GTCGGTTCCAGATTAACAAGCA 58.929 45.455 0.00 0.00 0.00 3.91
313 314 3.071479 TGTCGGTTCCAGATTAACAAGC 58.929 45.455 0.00 0.00 0.00 4.01
314 315 4.994852 TCTTGTCGGTTCCAGATTAACAAG 59.005 41.667 6.10 6.10 42.01 3.16
315 316 4.963373 TCTTGTCGGTTCCAGATTAACAA 58.037 39.130 0.00 0.00 0.00 2.83
316 317 4.610605 TCTTGTCGGTTCCAGATTAACA 57.389 40.909 0.00 0.00 0.00 2.41
317 318 4.201822 GCATCTTGTCGGTTCCAGATTAAC 60.202 45.833 0.00 0.00 0.00 2.01
318 319 3.938963 GCATCTTGTCGGTTCCAGATTAA 59.061 43.478 0.00 0.00 0.00 1.40
319 320 3.531538 GCATCTTGTCGGTTCCAGATTA 58.468 45.455 0.00 0.00 0.00 1.75
320 321 2.359900 GCATCTTGTCGGTTCCAGATT 58.640 47.619 0.00 0.00 0.00 2.40
321 322 1.740380 CGCATCTTGTCGGTTCCAGAT 60.740 52.381 0.00 0.00 0.00 2.90
322 323 0.389817 CGCATCTTGTCGGTTCCAGA 60.390 55.000 0.00 0.00 0.00 3.86
323 324 1.361668 CCGCATCTTGTCGGTTCCAG 61.362 60.000 0.00 0.00 40.72 3.86
324 325 1.375396 CCGCATCTTGTCGGTTCCA 60.375 57.895 0.00 0.00 40.72 3.53
325 326 2.750888 GCCGCATCTTGTCGGTTCC 61.751 63.158 2.58 0.00 46.79 3.62
326 327 2.750888 GGCCGCATCTTGTCGGTTC 61.751 63.158 2.58 0.00 46.79 3.62
327 328 2.746277 GGCCGCATCTTGTCGGTT 60.746 61.111 2.58 0.00 46.79 4.44
330 331 4.812476 TCCGGCCGCATCTTGTCG 62.812 66.667 22.85 2.11 0.00 4.35
331 332 1.819632 ATTCCGGCCGCATCTTGTC 60.820 57.895 22.85 0.00 0.00 3.18
332 333 2.114670 CATTCCGGCCGCATCTTGT 61.115 57.895 22.85 0.00 0.00 3.16
333 334 2.114670 ACATTCCGGCCGCATCTTG 61.115 57.895 22.85 14.40 0.00 3.02
334 335 2.114670 CACATTCCGGCCGCATCTT 61.115 57.895 22.85 0.00 0.00 2.40
335 336 2.514592 CACATTCCGGCCGCATCT 60.515 61.111 22.85 0.00 0.00 2.90
336 337 2.513666 TCACATTCCGGCCGCATC 60.514 61.111 22.85 0.00 0.00 3.91
337 338 2.824041 GTCACATTCCGGCCGCAT 60.824 61.111 22.85 11.37 0.00 4.73
345 346 0.171007 CCAATGCACGGTCACATTCC 59.829 55.000 0.00 0.00 34.32 3.01
346 347 0.171007 CCCAATGCACGGTCACATTC 59.829 55.000 0.00 0.00 34.32 2.67
347 348 1.876497 GCCCAATGCACGGTCACATT 61.876 55.000 0.00 1.13 40.77 2.71
348 349 2.342650 GCCCAATGCACGGTCACAT 61.343 57.895 0.00 0.00 40.77 3.21
349 350 2.983030 GCCCAATGCACGGTCACA 60.983 61.111 0.00 0.00 40.77 3.58
350 351 4.101790 CGCCCAATGCACGGTCAC 62.102 66.667 0.00 0.00 41.33 3.67
354 355 4.132441 AATGCGCCCAATGCACGG 62.132 61.111 4.18 0.00 46.57 4.94
355 356 2.580326 GAATGCGCCCAATGCACG 60.580 61.111 4.18 0.00 46.57 5.34
356 357 1.517694 CTGAATGCGCCCAATGCAC 60.518 57.895 4.18 0.00 46.57 4.57
358 359 0.108709 TTTCTGAATGCGCCCAATGC 60.109 50.000 4.18 0.00 0.00 3.56
359 360 2.466846 GATTTCTGAATGCGCCCAATG 58.533 47.619 4.18 0.00 0.00 2.82
360 361 1.410153 GGATTTCTGAATGCGCCCAAT 59.590 47.619 4.18 0.00 0.00 3.16
361 362 0.817013 GGATTTCTGAATGCGCCCAA 59.183 50.000 4.18 0.00 0.00 4.12
362 363 2.492418 GGATTTCTGAATGCGCCCA 58.508 52.632 4.18 0.00 0.00 5.36
367 368 1.651987 TCGTCCGGATTTCTGAATGC 58.348 50.000 7.81 0.00 0.00 3.56
368 369 3.000041 TGTTCGTCCGGATTTCTGAATG 59.000 45.455 7.81 0.00 0.00 2.67
369 370 3.328382 TGTTCGTCCGGATTTCTGAAT 57.672 42.857 7.81 0.00 0.00 2.57
370 371 2.823924 TGTTCGTCCGGATTTCTGAA 57.176 45.000 7.81 4.68 0.00 3.02
371 372 2.616960 CATGTTCGTCCGGATTTCTGA 58.383 47.619 7.81 0.00 0.00 3.27
372 373 1.665679 CCATGTTCGTCCGGATTTCTG 59.334 52.381 7.81 0.91 0.00 3.02
373 374 2.012051 GCCATGTTCGTCCGGATTTCT 61.012 52.381 7.81 0.00 0.00 2.52
374 375 0.377203 GCCATGTTCGTCCGGATTTC 59.623 55.000 7.81 0.00 0.00 2.17
375 376 0.035439 AGCCATGTTCGTCCGGATTT 60.035 50.000 7.81 0.00 0.00 2.17
376 377 0.462047 GAGCCATGTTCGTCCGGATT 60.462 55.000 7.81 0.00 0.00 3.01
377 378 1.144057 GAGCCATGTTCGTCCGGAT 59.856 57.895 7.81 0.00 0.00 4.18
378 379 2.577059 GAGCCATGTTCGTCCGGA 59.423 61.111 0.00 0.00 0.00 5.14
379 380 2.511600 GGAGCCATGTTCGTCCGG 60.512 66.667 0.00 0.00 0.00 5.14
380 381 0.744414 AATGGAGCCATGTTCGTCCG 60.744 55.000 2.18 0.00 36.68 4.79
381 382 2.325583 TAATGGAGCCATGTTCGTCC 57.674 50.000 2.18 0.00 36.68 4.79
382 383 3.006940 TGTTAATGGAGCCATGTTCGTC 58.993 45.455 2.18 0.00 36.68 4.20
383 384 3.066291 TGTTAATGGAGCCATGTTCGT 57.934 42.857 2.18 0.00 36.68 3.85
384 385 4.637483 AATGTTAATGGAGCCATGTTCG 57.363 40.909 2.18 0.00 36.68 3.95
387 388 9.985730 CATTTTATAATGTTAATGGAGCCATGT 57.014 29.630 2.18 0.00 37.06 3.21
407 408 9.362151 AGGTTTAGTCCACTTTTCATCATTTTA 57.638 29.630 0.00 0.00 0.00 1.52
408 409 8.250143 AGGTTTAGTCCACTTTTCATCATTTT 57.750 30.769 0.00 0.00 0.00 1.82
409 410 7.839680 AGGTTTAGTCCACTTTTCATCATTT 57.160 32.000 0.00 0.00 0.00 2.32
410 411 7.119262 CGTAGGTTTAGTCCACTTTTCATCATT 59.881 37.037 0.00 0.00 0.00 2.57
411 412 6.594159 CGTAGGTTTAGTCCACTTTTCATCAT 59.406 38.462 0.00 0.00 0.00 2.45
412 413 5.929992 CGTAGGTTTAGTCCACTTTTCATCA 59.070 40.000 0.00 0.00 0.00 3.07
413 414 5.930569 ACGTAGGTTTAGTCCACTTTTCATC 59.069 40.000 0.00 0.00 0.00 2.92
414 415 5.861727 ACGTAGGTTTAGTCCACTTTTCAT 58.138 37.500 0.00 0.00 0.00 2.57
415 416 5.280654 ACGTAGGTTTAGTCCACTTTTCA 57.719 39.130 0.00 0.00 0.00 2.69
416 417 5.835911 GACGTAGGTTTAGTCCACTTTTC 57.164 43.478 0.00 0.00 0.00 2.29
424 425 4.488879 ACGATTTGGACGTAGGTTTAGTC 58.511 43.478 0.00 0.00 42.17 2.59
425 426 4.525912 ACGATTTGGACGTAGGTTTAGT 57.474 40.909 0.00 0.00 42.17 2.24
426 427 5.199424 CAACGATTTGGACGTAGGTTTAG 57.801 43.478 0.00 0.00 43.16 1.85
439 440 4.032900 CGACCTATCAACTCCAACGATTTG 59.967 45.833 0.00 0.00 31.61 2.32
440 441 4.181578 CGACCTATCAACTCCAACGATTT 58.818 43.478 0.00 0.00 0.00 2.17
441 442 3.782046 CGACCTATCAACTCCAACGATT 58.218 45.455 0.00 0.00 0.00 3.34
442 443 2.481449 GCGACCTATCAACTCCAACGAT 60.481 50.000 0.00 0.00 0.00 3.73
443 444 1.135199 GCGACCTATCAACTCCAACGA 60.135 52.381 0.00 0.00 0.00 3.85
444 445 1.135083 AGCGACCTATCAACTCCAACG 60.135 52.381 0.00 0.00 0.00 4.10
445 446 2.271800 CAGCGACCTATCAACTCCAAC 58.728 52.381 0.00 0.00 0.00 3.77
446 447 1.207089 CCAGCGACCTATCAACTCCAA 59.793 52.381 0.00 0.00 0.00 3.53
447 448 0.824109 CCAGCGACCTATCAACTCCA 59.176 55.000 0.00 0.00 0.00 3.86
448 449 1.112113 TCCAGCGACCTATCAACTCC 58.888 55.000 0.00 0.00 0.00 3.85
449 450 1.476891 TGTCCAGCGACCTATCAACTC 59.523 52.381 0.00 0.00 38.32 3.01
450 451 1.557099 TGTCCAGCGACCTATCAACT 58.443 50.000 0.00 0.00 38.32 3.16
451 452 2.271800 CTTGTCCAGCGACCTATCAAC 58.728 52.381 0.00 0.00 38.32 3.18
452 453 1.899814 ACTTGTCCAGCGACCTATCAA 59.100 47.619 0.00 0.00 38.32 2.57
453 454 1.476891 GACTTGTCCAGCGACCTATCA 59.523 52.381 0.00 0.00 38.32 2.15
454 455 1.751924 AGACTTGTCCAGCGACCTATC 59.248 52.381 0.00 0.00 38.32 2.08
455 456 1.751924 GAGACTTGTCCAGCGACCTAT 59.248 52.381 0.00 0.00 38.32 2.57
456 457 1.174783 GAGACTTGTCCAGCGACCTA 58.825 55.000 0.00 0.00 38.32 3.08
579 596 2.067605 TACGGGCGGATGATGGGTT 61.068 57.895 0.00 0.00 0.00 4.11
580 597 2.445085 TACGGGCGGATGATGGGT 60.445 61.111 0.00 0.00 0.00 4.51
581 598 2.030562 GTACGGGCGGATGATGGG 59.969 66.667 0.00 0.00 0.00 4.00
582 599 1.006102 GAGTACGGGCGGATGATGG 60.006 63.158 0.00 0.00 0.00 3.51
583 600 1.371758 CGAGTACGGGCGGATGATG 60.372 63.158 0.00 0.00 35.72 3.07
584 601 1.793134 GACGAGTACGGGCGGATGAT 61.793 60.000 0.00 0.00 44.46 2.45
585 602 2.438975 ACGAGTACGGGCGGATGA 60.439 61.111 0.00 0.00 44.46 2.92
897 915 1.269309 GGCAAACCAATACACGCAACA 60.269 47.619 0.00 0.00 35.26 3.33
954 972 4.041938 ACCCCTGACAAATGCAATTTTCAT 59.958 37.500 3.91 0.00 46.10 2.57
1063 1135 7.890655 AGAGGAAACATTATTAACTCCAAAGCT 59.109 33.333 0.00 0.00 0.00 3.74
1151 1223 7.290857 TCAAACTTATCATCGAAGTTACTGC 57.709 36.000 0.10 0.00 44.43 4.40
1181 1257 7.012894 GTGTTATTAATGTGCCCAGCAGTAATA 59.987 37.037 0.00 0.00 40.08 0.98
1219 1295 6.376581 GCCATCTTAGCCTGCAAATAGATATT 59.623 38.462 0.00 0.00 0.00 1.28
1224 1300 2.225019 CGCCATCTTAGCCTGCAAATAG 59.775 50.000 0.00 0.00 0.00 1.73
1236 1312 1.618837 GGCTCATAGGTCGCCATCTTA 59.381 52.381 5.77 0.00 43.25 2.10
1347 1423 5.333513 CAGTAGTCAATCTTGTCGAGTACC 58.666 45.833 0.00 0.00 36.60 3.34
1350 1426 3.508012 AGCAGTAGTCAATCTTGTCGAGT 59.492 43.478 0.00 0.00 0.00 4.18
1599 1675 3.278668 AATCTTCTGATCTGGCCAGTG 57.721 47.619 31.58 19.29 33.57 3.66
2085 2161 1.839994 CTCTGGTCATTGAAGGGCCTA 59.160 52.381 6.41 0.00 0.00 3.93
2265 2341 3.074538 AGTTATGCCTTTCAACTCCAGGT 59.925 43.478 0.00 0.00 0.00 4.00
3366 3442 3.708631 AGCTTATAGCAGACCTGTGTCAT 59.291 43.478 1.09 0.00 45.56 3.06
3393 3469 8.902806 GCCACCATGCAATATATTAGCTAAATA 58.097 33.333 10.85 9.91 34.56 1.40
3394 3470 7.396907 TGCCACCATGCAATATATTAGCTAAAT 59.603 33.333 10.85 8.10 38.56 1.40
3395 3471 6.718912 TGCCACCATGCAATATATTAGCTAAA 59.281 34.615 10.85 0.60 38.56 1.85
3637 3715 9.971922 AACTTCAGATATGAAAACCAAGAAAAG 57.028 29.630 4.06 0.00 0.00 2.27
3679 3757 7.399245 ACCAACAAAACTACACATGTAAGTT 57.601 32.000 16.28 16.28 0.00 2.66
3685 3763 9.474920 AAATATGAACCAACAAAACTACACATG 57.525 29.630 0.00 0.00 0.00 3.21
3837 3917 7.337689 TCAAACTGATCTACTGCAAGCAAATAT 59.662 33.333 0.00 0.00 37.60 1.28
3856 3936 5.237127 TGTGTGATGCTCTAAAGTCAAACTG 59.763 40.000 0.00 0.00 31.59 3.16
3868 3948 6.624423 GCAAATATTTCAGTGTGTGATGCTCT 60.624 38.462 0.00 0.00 32.95 4.09
3872 3952 6.183360 GCAAGCAAATATTTCAGTGTGTGATG 60.183 38.462 0.00 0.00 34.17 3.07
3986 4067 0.748450 TGTGGAAACCTCGAACTCGT 59.252 50.000 0.00 0.00 40.80 4.18
3987 4068 1.000607 TCTGTGGAAACCTCGAACTCG 60.001 52.381 0.00 0.00 41.45 4.18
4017 4098 8.954350 CCAGAGATCAAGAAGATTACACAAAAT 58.046 33.333 0.00 0.00 37.00 1.82
4077 4158 4.062293 GCGCACTATATTGTATCCAACCA 58.938 43.478 0.30 0.00 32.26 3.67
4091 4172 1.007734 CGTCCCATACGCGCACTAT 60.008 57.895 5.73 0.00 46.10 2.12
4092 4173 2.410060 CGTCCCATACGCGCACTA 59.590 61.111 5.73 0.00 46.10 2.74
4101 4182 1.338107 CATAGCCCACTCGTCCCATA 58.662 55.000 0.00 0.00 0.00 2.74
4182 4266 0.462047 ATTCCTCCGTGGATTCGCAC 60.462 55.000 0.00 0.00 45.68 5.34
4206 4290 2.422597 CGAAGTGCCAAATGGTGTCTA 58.577 47.619 0.71 0.00 37.57 2.59
4228 4312 3.905678 CGGAGCCCAGCCTAGTCG 61.906 72.222 0.00 0.00 0.00 4.18
4285 4531 1.683917 AGCTGTTGAAGACTGTCTCGT 59.316 47.619 11.31 0.00 0.00 4.18
4305 4551 2.046023 CCTGGTGAATCTGCGCCA 60.046 61.111 4.18 0.00 45.59 5.69
4328 4574 2.029838 AAGCCGAAGTATGCTTCCAG 57.970 50.000 16.70 10.20 44.12 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.