Multiple sequence alignment - TraesCS4D01G204600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G204600 chr4D 100.000 2738 0 0 1 2738 352123810 352126547 0 5057
1 TraesCS4D01G204600 chr4A 94.160 1935 68 20 830 2738 113325525 113323610 0 2905
2 TraesCS4D01G204600 chr4B 91.788 1924 105 27 830 2738 435441722 435439837 0 2628


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G204600 chr4D 352123810 352126547 2737 False 5057 5057 100.000 1 2738 1 chr4D.!!$F1 2737
1 TraesCS4D01G204600 chr4A 113323610 113325525 1915 True 2905 2905 94.160 830 2738 1 chr4A.!!$R1 1908
2 TraesCS4D01G204600 chr4B 435439837 435441722 1885 True 2628 2628 91.788 830 2738 1 chr4B.!!$R1 1908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 693 0.035915 TGATGACGGCGGGAATGAAA 60.036 50.0 13.24 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2115 2.026822 AGGCTTGCAGCAGTATAAGTGT 60.027 45.455 9.78 0.0 44.75 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.545362 TTTTCGCAAATTTGAGGAAATTTCA 57.455 28.000 25.41 15.20 44.88 2.69
46 47 7.545362 TTTCGCAAATTTGAGGAAATTTCAA 57.455 28.000 22.31 5.89 44.88 2.69
47 48 7.727331 TTCGCAAATTTGAGGAAATTTCAAT 57.273 28.000 22.31 7.63 44.88 2.57
48 49 8.824159 TTCGCAAATTTGAGGAAATTTCAATA 57.176 26.923 22.31 2.32 44.88 1.90
49 50 8.238481 TCGCAAATTTGAGGAAATTTCAATAC 57.762 30.769 22.31 8.03 44.88 1.89
50 51 8.087750 TCGCAAATTTGAGGAAATTTCAATACT 58.912 29.630 22.31 7.39 44.88 2.12
51 52 8.711457 CGCAAATTTGAGGAAATTTCAATACTT 58.289 29.630 22.31 3.47 44.88 2.24
52 53 9.815936 GCAAATTTGAGGAAATTTCAATACTTG 57.184 29.630 22.31 12.41 44.88 3.16
57 58 9.541143 TTTGAGGAAATTTCAATACTTGGAAAC 57.459 29.630 19.49 0.00 35.99 2.78
58 59 8.477419 TGAGGAAATTTCAATACTTGGAAACT 57.523 30.769 19.49 2.86 35.99 2.66
59 60 8.923270 TGAGGAAATTTCAATACTTGGAAACTT 58.077 29.630 19.49 0.00 35.99 2.66
60 61 9.411801 GAGGAAATTTCAATACTTGGAAACTTC 57.588 33.333 19.49 0.00 38.08 3.01
61 62 8.534333 GGAAATTTCAATACTTGGAAACTTCC 57.466 34.615 19.49 10.37 45.92 3.46
78 79 7.806487 GGAAACTTCCTATTTTGTAAAAGTCCG 59.194 37.037 0.97 0.00 44.11 4.79
79 80 6.250344 ACTTCCTATTTTGTAAAAGTCCGC 57.750 37.500 0.00 0.00 0.00 5.54
80 81 5.766174 ACTTCCTATTTTGTAAAAGTCCGCA 59.234 36.000 0.00 0.00 0.00 5.69
81 82 6.263617 ACTTCCTATTTTGTAAAAGTCCGCAA 59.736 34.615 0.00 0.00 0.00 4.85
82 83 6.636562 TCCTATTTTGTAAAAGTCCGCAAA 57.363 33.333 0.00 0.00 0.00 3.68
83 84 7.040473 TCCTATTTTGTAAAAGTCCGCAAAA 57.960 32.000 0.00 0.00 42.48 2.44
84 85 7.490000 TCCTATTTTGTAAAAGTCCGCAAAAA 58.510 30.769 0.00 0.00 41.89 1.94
171 172 7.595311 ATTTCATGAAATTTCGGTAAAAGGC 57.405 32.000 24.83 0.00 37.74 4.35
172 173 5.975693 TCATGAAATTTCGGTAAAAGGCT 57.024 34.783 13.34 0.00 0.00 4.58
173 174 5.949735 TCATGAAATTTCGGTAAAAGGCTC 58.050 37.500 13.34 0.00 0.00 4.70
174 175 5.475220 TCATGAAATTTCGGTAAAAGGCTCA 59.525 36.000 13.34 0.00 0.00 4.26
175 176 5.975693 TGAAATTTCGGTAAAAGGCTCAT 57.024 34.783 13.34 0.00 0.00 2.90
176 177 5.708948 TGAAATTTCGGTAAAAGGCTCATG 58.291 37.500 13.34 0.00 0.00 3.07
177 178 5.475220 TGAAATTTCGGTAAAAGGCTCATGA 59.525 36.000 13.34 0.00 0.00 3.07
178 179 5.975693 AATTTCGGTAAAAGGCTCATGAA 57.024 34.783 0.00 0.00 0.00 2.57
179 180 6.530019 AATTTCGGTAAAAGGCTCATGAAT 57.470 33.333 0.00 0.00 0.00 2.57
180 181 5.975693 TTTCGGTAAAAGGCTCATGAATT 57.024 34.783 0.00 0.00 0.00 2.17
181 182 5.560966 TTCGGTAAAAGGCTCATGAATTC 57.439 39.130 0.00 0.00 0.00 2.17
182 183 4.843728 TCGGTAAAAGGCTCATGAATTCT 58.156 39.130 7.05 0.00 0.00 2.40
183 184 4.876107 TCGGTAAAAGGCTCATGAATTCTC 59.124 41.667 7.05 0.00 0.00 2.87
184 185 4.635765 CGGTAAAAGGCTCATGAATTCTCA 59.364 41.667 7.05 0.00 35.56 3.27
185 186 5.123820 CGGTAAAAGGCTCATGAATTCTCAA 59.876 40.000 7.05 0.00 34.49 3.02
186 187 6.349280 CGGTAAAAGGCTCATGAATTCTCAAA 60.349 38.462 7.05 0.00 34.49 2.69
187 188 7.378181 GGTAAAAGGCTCATGAATTCTCAAAA 58.622 34.615 7.05 0.00 34.49 2.44
188 189 7.872483 GGTAAAAGGCTCATGAATTCTCAAAAA 59.128 33.333 7.05 0.00 34.49 1.94
189 190 7.958053 AAAAGGCTCATGAATTCTCAAAAAG 57.042 32.000 7.05 0.00 34.49 2.27
190 191 6.661304 AAGGCTCATGAATTCTCAAAAAGT 57.339 33.333 7.05 0.00 34.49 2.66
191 192 6.661304 AGGCTCATGAATTCTCAAAAAGTT 57.339 33.333 7.05 0.00 34.49 2.66
192 193 6.685657 AGGCTCATGAATTCTCAAAAAGTTC 58.314 36.000 7.05 0.00 34.49 3.01
193 194 6.266103 AGGCTCATGAATTCTCAAAAAGTTCA 59.734 34.615 7.05 0.00 34.49 3.18
194 195 6.925165 GGCTCATGAATTCTCAAAAAGTTCAA 59.075 34.615 7.05 0.00 34.49 2.69
195 196 7.115947 GGCTCATGAATTCTCAAAAAGTTCAAG 59.884 37.037 7.05 0.00 34.49 3.02
196 197 7.864379 GCTCATGAATTCTCAAAAAGTTCAAGA 59.136 33.333 7.05 0.00 34.49 3.02
197 198 9.178427 CTCATGAATTCTCAAAAAGTTCAAGAC 57.822 33.333 7.05 0.00 34.49 3.01
198 199 8.906867 TCATGAATTCTCAAAAAGTTCAAGACT 58.093 29.630 7.05 0.00 36.02 3.24
199 200 9.525409 CATGAATTCTCAAAAAGTTCAAGACTT 57.475 29.630 7.05 0.00 41.90 3.01
200 201 9.525409 ATGAATTCTCAAAAAGTTCAAGACTTG 57.475 29.630 9.03 9.03 40.42 3.16
217 218 9.581289 TCAAGACTTGGAAAATTGTAATTAGGA 57.419 29.630 15.13 0.00 0.00 2.94
278 279 9.757227 AAATCACGAAATTTCTAAAAACCATGA 57.243 25.926 15.92 6.17 0.00 3.07
279 280 9.757227 AATCACGAAATTTCTAAAAACCATGAA 57.243 25.926 15.92 0.00 0.00 2.57
280 281 9.927668 ATCACGAAATTTCTAAAAACCATGAAT 57.072 25.926 15.92 0.00 0.00 2.57
281 282 9.757227 TCACGAAATTTCTAAAAACCATGAATT 57.243 25.926 15.92 0.00 0.00 2.17
292 293 9.868389 CTAAAAACCATGAATTTGAGAAAAAGC 57.132 29.630 0.00 0.00 0.00 3.51
293 294 8.510243 AAAAACCATGAATTTGAGAAAAAGCT 57.490 26.923 0.00 0.00 0.00 3.74
294 295 7.719778 AAACCATGAATTTGAGAAAAAGCTC 57.280 32.000 0.00 0.00 35.46 4.09
295 296 5.464168 ACCATGAATTTGAGAAAAAGCTCG 58.536 37.500 0.00 0.00 37.73 5.03
296 297 5.010012 ACCATGAATTTGAGAAAAAGCTCGT 59.990 36.000 0.00 0.00 37.73 4.18
297 298 5.344128 CCATGAATTTGAGAAAAAGCTCGTG 59.656 40.000 0.00 0.00 37.73 4.35
298 299 4.858935 TGAATTTGAGAAAAAGCTCGTGG 58.141 39.130 0.00 0.00 37.73 4.94
299 300 4.578516 TGAATTTGAGAAAAAGCTCGTGGA 59.421 37.500 0.00 0.00 37.73 4.02
300 301 5.241506 TGAATTTGAGAAAAAGCTCGTGGAT 59.758 36.000 0.00 0.00 37.73 3.41
301 302 5.712152 ATTTGAGAAAAAGCTCGTGGATT 57.288 34.783 0.00 0.00 37.73 3.01
302 303 5.514274 TTTGAGAAAAAGCTCGTGGATTT 57.486 34.783 0.00 0.00 37.73 2.17
303 304 6.627395 TTTGAGAAAAAGCTCGTGGATTTA 57.373 33.333 0.00 0.00 37.73 1.40
304 305 6.627395 TTGAGAAAAAGCTCGTGGATTTAA 57.373 33.333 0.00 0.00 37.73 1.52
305 306 6.627395 TGAGAAAAAGCTCGTGGATTTAAA 57.373 33.333 0.00 0.00 37.73 1.52
306 307 7.033530 TGAGAAAAAGCTCGTGGATTTAAAA 57.966 32.000 0.00 0.00 37.73 1.52
307 308 7.484975 TGAGAAAAAGCTCGTGGATTTAAAAA 58.515 30.769 0.00 0.00 37.73 1.94
405 406 6.459670 AGTTCATAAACTTGGAAACGGTTT 57.540 33.333 5.68 5.68 43.28 3.27
406 407 7.571080 AGTTCATAAACTTGGAAACGGTTTA 57.429 32.000 6.03 0.00 43.28 2.01
407 408 7.998580 AGTTCATAAACTTGGAAACGGTTTAA 58.001 30.769 6.03 0.00 43.28 1.52
408 409 8.468399 AGTTCATAAACTTGGAAACGGTTTAAA 58.532 29.630 6.03 3.85 43.28 1.52
409 410 8.748582 GTTCATAAACTTGGAAACGGTTTAAAG 58.251 33.333 19.30 19.30 41.17 1.85
410 411 8.223177 TCATAAACTTGGAAACGGTTTAAAGA 57.777 30.769 24.26 10.81 41.17 2.52
411 412 8.684520 TCATAAACTTGGAAACGGTTTAAAGAA 58.315 29.630 24.26 14.61 41.17 2.52
412 413 9.471084 CATAAACTTGGAAACGGTTTAAAGAAT 57.529 29.630 24.26 17.35 41.17 2.40
413 414 7.764695 AAACTTGGAAACGGTTTAAAGAATG 57.235 32.000 24.26 9.31 37.20 2.67
414 415 5.838529 ACTTGGAAACGGTTTAAAGAATGG 58.161 37.500 24.26 8.37 0.00 3.16
415 416 5.595133 ACTTGGAAACGGTTTAAAGAATGGA 59.405 36.000 24.26 1.28 0.00 3.41
416 417 5.699097 TGGAAACGGTTTAAAGAATGGAG 57.301 39.130 6.03 0.00 0.00 3.86
417 418 5.378332 TGGAAACGGTTTAAAGAATGGAGA 58.622 37.500 6.03 0.00 0.00 3.71
418 419 5.828859 TGGAAACGGTTTAAAGAATGGAGAA 59.171 36.000 6.03 0.00 0.00 2.87
419 420 6.321690 TGGAAACGGTTTAAAGAATGGAGAAA 59.678 34.615 6.03 0.00 0.00 2.52
420 421 7.147880 TGGAAACGGTTTAAAGAATGGAGAAAA 60.148 33.333 6.03 0.00 0.00 2.29
421 422 7.870954 GGAAACGGTTTAAAGAATGGAGAAAAT 59.129 33.333 6.03 0.00 0.00 1.82
422 423 8.587952 AAACGGTTTAAAGAATGGAGAAAATG 57.412 30.769 3.90 0.00 0.00 2.32
423 424 7.284919 ACGGTTTAAAGAATGGAGAAAATGT 57.715 32.000 0.00 0.00 0.00 2.71
424 425 8.398878 ACGGTTTAAAGAATGGAGAAAATGTA 57.601 30.769 0.00 0.00 0.00 2.29
425 426 8.852135 ACGGTTTAAAGAATGGAGAAAATGTAA 58.148 29.630 0.00 0.00 0.00 2.41
426 427 9.124807 CGGTTTAAAGAATGGAGAAAATGTAAC 57.875 33.333 0.00 0.00 0.00 2.50
427 428 9.124807 GGTTTAAAGAATGGAGAAAATGTAACG 57.875 33.333 0.00 0.00 0.00 3.18
428 429 9.887406 GTTTAAAGAATGGAGAAAATGTAACGA 57.113 29.630 0.00 0.00 0.00 3.85
432 433 9.981114 AAAGAATGGAGAAAATGTAACGAATTT 57.019 25.926 0.00 0.00 0.00 1.82
433 434 8.970691 AGAATGGAGAAAATGTAACGAATTTG 57.029 30.769 0.00 0.00 0.00 2.32
434 435 8.792633 AGAATGGAGAAAATGTAACGAATTTGA 58.207 29.630 0.00 0.00 0.00 2.69
435 436 8.742554 AATGGAGAAAATGTAACGAATTTGAC 57.257 30.769 0.00 0.00 0.00 3.18
436 437 7.265647 TGGAGAAAATGTAACGAATTTGACA 57.734 32.000 0.00 0.00 0.00 3.58
437 438 7.708051 TGGAGAAAATGTAACGAATTTGACAA 58.292 30.769 0.00 0.00 0.00 3.18
438 439 8.191446 TGGAGAAAATGTAACGAATTTGACAAA 58.809 29.630 2.48 2.48 0.00 2.83
439 440 9.026074 GGAGAAAATGTAACGAATTTGACAAAA 57.974 29.630 4.41 0.00 0.00 2.44
441 442 9.581099 AGAAAATGTAACGAATTTGACAAAAGT 57.419 25.926 4.41 3.25 0.00 2.66
504 505 8.601845 AAATAAAAGGAAAAGAAATGAACCGG 57.398 30.769 0.00 0.00 0.00 5.28
505 506 5.607939 AAAAGGAAAAGAAATGAACCGGT 57.392 34.783 0.00 0.00 0.00 5.28
506 507 4.584327 AAGGAAAAGAAATGAACCGGTG 57.416 40.909 8.52 0.00 0.00 4.94
507 508 3.562182 AGGAAAAGAAATGAACCGGTGT 58.438 40.909 8.52 0.00 0.00 4.16
508 509 4.721132 AGGAAAAGAAATGAACCGGTGTA 58.279 39.130 8.52 0.00 0.00 2.90
509 510 5.134661 AGGAAAAGAAATGAACCGGTGTAA 58.865 37.500 8.52 0.00 0.00 2.41
510 511 5.595133 AGGAAAAGAAATGAACCGGTGTAAA 59.405 36.000 8.52 0.00 0.00 2.01
511 512 6.097129 AGGAAAAGAAATGAACCGGTGTAAAA 59.903 34.615 8.52 0.00 0.00 1.52
512 513 6.757478 GGAAAAGAAATGAACCGGTGTAAAAA 59.243 34.615 8.52 0.00 0.00 1.94
513 514 7.254185 GGAAAAGAAATGAACCGGTGTAAAAAC 60.254 37.037 8.52 0.00 0.00 2.43
514 515 5.838531 AGAAATGAACCGGTGTAAAAACA 57.161 34.783 8.52 0.53 0.00 2.83
515 516 6.399639 AGAAATGAACCGGTGTAAAAACAT 57.600 33.333 8.52 3.05 0.00 2.71
516 517 6.212955 AGAAATGAACCGGTGTAAAAACATG 58.787 36.000 8.52 0.00 0.00 3.21
517 518 5.523438 AATGAACCGGTGTAAAAACATGT 57.477 34.783 8.52 0.00 0.00 3.21
518 519 4.555348 TGAACCGGTGTAAAAACATGTC 57.445 40.909 8.52 0.00 0.00 3.06
519 520 3.945921 TGAACCGGTGTAAAAACATGTCA 59.054 39.130 8.52 0.00 0.00 3.58
520 521 4.035792 TGAACCGGTGTAAAAACATGTCAG 59.964 41.667 8.52 0.00 0.00 3.51
521 522 3.811083 ACCGGTGTAAAAACATGTCAGA 58.189 40.909 6.12 0.00 0.00 3.27
522 523 4.200874 ACCGGTGTAAAAACATGTCAGAA 58.799 39.130 6.12 0.00 0.00 3.02
523 524 4.641094 ACCGGTGTAAAAACATGTCAGAAA 59.359 37.500 6.12 0.00 0.00 2.52
524 525 5.125739 ACCGGTGTAAAAACATGTCAGAAAA 59.874 36.000 6.12 0.00 0.00 2.29
525 526 6.037098 CCGGTGTAAAAACATGTCAGAAAAA 58.963 36.000 0.00 0.00 0.00 1.94
551 552 9.562408 AACCTAAAGAAAAACAAAAGAAAACCA 57.438 25.926 0.00 0.00 0.00 3.67
552 553 9.733556 ACCTAAAGAAAAACAAAAGAAAACCAT 57.266 25.926 0.00 0.00 0.00 3.55
557 558 9.508642 AAGAAAAACAAAAGAAAACCATTACCA 57.491 25.926 0.00 0.00 0.00 3.25
558 559 9.508642 AGAAAAACAAAAGAAAACCATTACCAA 57.491 25.926 0.00 0.00 0.00 3.67
562 563 8.856153 AACAAAAGAAAACCATTACCAAAAGT 57.144 26.923 0.00 0.00 0.00 2.66
563 564 8.856153 ACAAAAGAAAACCATTACCAAAAGTT 57.144 26.923 0.00 0.00 0.00 2.66
564 565 9.945904 ACAAAAGAAAACCATTACCAAAAGTTA 57.054 25.926 0.00 0.00 0.00 2.24
570 571 9.991388 GAAAACCATTACCAAAAGTTAAAAACC 57.009 29.630 0.00 0.00 0.00 3.27
571 572 9.516546 AAAACCATTACCAAAAGTTAAAAACCA 57.483 25.926 0.00 0.00 0.00 3.67
572 573 9.516546 AAACCATTACCAAAAGTTAAAAACCAA 57.483 25.926 0.00 0.00 0.00 3.67
573 574 9.688091 AACCATTACCAAAAGTTAAAAACCAAT 57.312 25.926 0.00 0.00 0.00 3.16
584 585 8.951787 AAGTTAAAAACCAATAAGAAACCACC 57.048 30.769 0.00 0.00 0.00 4.61
585 586 8.080363 AGTTAAAAACCAATAAGAAACCACCA 57.920 30.769 0.00 0.00 0.00 4.17
586 587 8.541234 AGTTAAAAACCAATAAGAAACCACCAA 58.459 29.630 0.00 0.00 0.00 3.67
587 588 8.822855 GTTAAAAACCAATAAGAAACCACCAAG 58.177 33.333 0.00 0.00 0.00 3.61
588 589 6.800072 AAAACCAATAAGAAACCACCAAGA 57.200 33.333 0.00 0.00 0.00 3.02
589 590 6.800072 AAACCAATAAGAAACCACCAAGAA 57.200 33.333 0.00 0.00 0.00 2.52
590 591 6.800072 AACCAATAAGAAACCACCAAGAAA 57.200 33.333 0.00 0.00 0.00 2.52
591 592 6.800072 ACCAATAAGAAACCACCAAGAAAA 57.200 33.333 0.00 0.00 0.00 2.29
592 593 7.189079 ACCAATAAGAAACCACCAAGAAAAA 57.811 32.000 0.00 0.00 0.00 1.94
607 608 2.353030 AAAAACTCGCGCCGCAAC 60.353 55.556 10.75 0.00 0.00 4.17
608 609 2.830285 AAAAACTCGCGCCGCAACT 61.830 52.632 10.75 0.00 0.00 3.16
609 610 1.500512 AAAAACTCGCGCCGCAACTA 61.501 50.000 10.75 0.00 0.00 2.24
610 611 2.166584 AAAACTCGCGCCGCAACTAC 62.167 55.000 10.75 0.00 0.00 2.73
611 612 3.851845 AACTCGCGCCGCAACTACA 62.852 57.895 10.75 0.00 0.00 2.74
612 613 3.109547 CTCGCGCCGCAACTACAA 61.110 61.111 10.75 0.00 0.00 2.41
613 614 2.433491 TCGCGCCGCAACTACAAT 60.433 55.556 10.75 0.00 0.00 2.71
614 615 1.143373 CTCGCGCCGCAACTACAATA 61.143 55.000 10.75 0.00 0.00 1.90
615 616 1.012671 CGCGCCGCAACTACAATAC 60.013 57.895 10.75 0.00 0.00 1.89
616 617 1.418342 CGCGCCGCAACTACAATACT 61.418 55.000 10.75 0.00 0.00 2.12
617 618 0.725117 GCGCCGCAACTACAATACTT 59.275 50.000 3.15 0.00 0.00 2.24
618 619 1.529010 GCGCCGCAACTACAATACTTG 60.529 52.381 3.15 0.00 0.00 3.16
619 620 1.996898 CGCCGCAACTACAATACTTGA 59.003 47.619 0.00 0.00 0.00 3.02
620 621 2.222729 CGCCGCAACTACAATACTTGAC 60.223 50.000 0.00 0.00 0.00 3.18
621 622 2.095372 GCCGCAACTACAATACTTGACC 59.905 50.000 0.00 0.00 0.00 4.02
622 623 2.347452 CCGCAACTACAATACTTGACCG 59.653 50.000 0.00 0.00 0.00 4.79
623 624 2.347452 CGCAACTACAATACTTGACCGG 59.653 50.000 0.00 0.00 0.00 5.28
624 625 2.095372 GCAACTACAATACTTGACCGGC 59.905 50.000 0.00 0.00 0.00 6.13
625 626 3.596214 CAACTACAATACTTGACCGGCT 58.404 45.455 0.00 0.00 0.00 5.52
626 627 3.521947 ACTACAATACTTGACCGGCTC 57.478 47.619 0.00 0.00 0.00 4.70
627 628 2.829720 ACTACAATACTTGACCGGCTCA 59.170 45.455 0.00 1.26 0.00 4.26
628 629 2.386661 ACAATACTTGACCGGCTCAG 57.613 50.000 0.00 0.00 0.00 3.35
629 630 1.623811 ACAATACTTGACCGGCTCAGT 59.376 47.619 0.00 2.88 0.00 3.41
630 631 2.829720 ACAATACTTGACCGGCTCAGTA 59.170 45.455 0.00 5.44 0.00 2.74
631 632 3.187700 CAATACTTGACCGGCTCAGTAC 58.812 50.000 0.00 0.00 0.00 2.73
632 633 1.180029 TACTTGACCGGCTCAGTACC 58.820 55.000 0.00 0.00 0.00 3.34
641 642 4.063967 CTCAGTACCGCCGTGCCA 62.064 66.667 0.00 0.00 0.00 4.92
642 643 3.989698 CTCAGTACCGCCGTGCCAG 62.990 68.421 0.00 0.00 0.00 4.85
643 644 4.063967 CAGTACCGCCGTGCCAGA 62.064 66.667 0.00 0.00 0.00 3.86
644 645 3.760035 AGTACCGCCGTGCCAGAG 61.760 66.667 0.00 0.00 0.00 3.35
645 646 4.814294 GTACCGCCGTGCCAGAGG 62.814 72.222 0.00 0.00 0.00 3.69
655 656 2.202946 GCCAGAGGCGAGGTTAGC 60.203 66.667 0.00 0.00 39.62 3.09
656 657 2.105128 CCAGAGGCGAGGTTAGCG 59.895 66.667 0.00 0.00 35.00 4.26
657 658 2.415608 CCAGAGGCGAGGTTAGCGA 61.416 63.158 0.00 0.00 35.00 4.93
658 659 1.064946 CAGAGGCGAGGTTAGCGAG 59.935 63.158 0.00 0.00 35.00 5.03
659 660 1.077644 AGAGGCGAGGTTAGCGAGA 60.078 57.895 0.00 0.00 35.00 4.04
660 661 0.680280 AGAGGCGAGGTTAGCGAGAA 60.680 55.000 0.00 0.00 35.00 2.87
661 662 0.172803 GAGGCGAGGTTAGCGAGAAA 59.827 55.000 0.00 0.00 35.00 2.52
662 663 0.824759 AGGCGAGGTTAGCGAGAAAT 59.175 50.000 0.00 0.00 35.00 2.17
663 664 2.029623 AGGCGAGGTTAGCGAGAAATA 58.970 47.619 0.00 0.00 35.00 1.40
664 665 2.034812 AGGCGAGGTTAGCGAGAAATAG 59.965 50.000 0.00 0.00 35.00 1.73
665 666 2.034305 GGCGAGGTTAGCGAGAAATAGA 59.966 50.000 0.00 0.00 35.00 1.98
666 667 3.044286 GCGAGGTTAGCGAGAAATAGAC 58.956 50.000 0.00 0.00 0.00 2.59
667 668 3.630101 CGAGGTTAGCGAGAAATAGACC 58.370 50.000 0.00 0.00 0.00 3.85
668 669 3.315749 CGAGGTTAGCGAGAAATAGACCT 59.684 47.826 0.00 0.00 38.65 3.85
669 670 4.514441 CGAGGTTAGCGAGAAATAGACCTA 59.486 45.833 0.00 0.00 36.25 3.08
670 671 5.334260 CGAGGTTAGCGAGAAATAGACCTAG 60.334 48.000 0.00 0.00 36.25 3.02
671 672 5.447757 AGGTTAGCGAGAAATAGACCTAGT 58.552 41.667 0.00 0.00 34.46 2.57
672 673 5.299782 AGGTTAGCGAGAAATAGACCTAGTG 59.700 44.000 0.00 0.00 34.46 2.74
673 674 5.067544 GGTTAGCGAGAAATAGACCTAGTGT 59.932 44.000 0.00 0.00 0.00 3.55
674 675 4.640789 AGCGAGAAATAGACCTAGTGTG 57.359 45.455 0.00 0.00 0.00 3.82
675 676 4.270834 AGCGAGAAATAGACCTAGTGTGA 58.729 43.478 0.00 0.00 0.00 3.58
676 677 4.890581 AGCGAGAAATAGACCTAGTGTGAT 59.109 41.667 0.00 0.00 0.00 3.06
677 678 4.979197 GCGAGAAATAGACCTAGTGTGATG 59.021 45.833 0.00 0.00 0.00 3.07
678 679 5.221067 GCGAGAAATAGACCTAGTGTGATGA 60.221 44.000 0.00 0.00 0.00 2.92
679 680 6.202937 CGAGAAATAGACCTAGTGTGATGAC 58.797 44.000 0.00 0.00 0.00 3.06
680 681 6.137794 AGAAATAGACCTAGTGTGATGACG 57.862 41.667 0.00 0.00 0.00 4.35
681 682 4.920640 AATAGACCTAGTGTGATGACGG 57.079 45.455 0.00 0.00 0.00 4.79
682 683 0.818296 AGACCTAGTGTGATGACGGC 59.182 55.000 0.00 0.00 0.00 5.68
683 684 0.525668 GACCTAGTGTGATGACGGCG 60.526 60.000 4.80 4.80 0.00 6.46
684 685 1.226974 CCTAGTGTGATGACGGCGG 60.227 63.158 13.24 0.00 0.00 6.13
685 686 1.226974 CTAGTGTGATGACGGCGGG 60.227 63.158 13.24 0.00 0.00 6.13
686 687 1.663379 CTAGTGTGATGACGGCGGGA 61.663 60.000 13.24 0.00 0.00 5.14
687 688 1.252215 TAGTGTGATGACGGCGGGAA 61.252 55.000 13.24 0.00 0.00 3.97
688 689 1.449601 GTGTGATGACGGCGGGAAT 60.450 57.895 13.24 0.62 0.00 3.01
689 690 1.449423 TGTGATGACGGCGGGAATG 60.449 57.895 13.24 0.00 0.00 2.67
690 691 1.153449 GTGATGACGGCGGGAATGA 60.153 57.895 13.24 0.00 0.00 2.57
691 692 0.742990 GTGATGACGGCGGGAATGAA 60.743 55.000 13.24 0.00 0.00 2.57
692 693 0.035915 TGATGACGGCGGGAATGAAA 60.036 50.000 13.24 0.00 0.00 2.69
693 694 1.308998 GATGACGGCGGGAATGAAAT 58.691 50.000 13.24 0.00 0.00 2.17
694 695 2.158885 TGATGACGGCGGGAATGAAATA 60.159 45.455 13.24 0.00 0.00 1.40
695 696 1.658994 TGACGGCGGGAATGAAATAC 58.341 50.000 13.24 0.00 0.00 1.89
696 697 0.580104 GACGGCGGGAATGAAATACG 59.420 55.000 13.24 0.00 0.00 3.06
699 700 3.825812 GCGGGAATGAAATACGCTG 57.174 52.632 0.00 0.00 46.02 5.18
700 701 0.317020 GCGGGAATGAAATACGCTGC 60.317 55.000 0.00 0.00 46.02 5.25
701 702 1.299541 CGGGAATGAAATACGCTGCT 58.700 50.000 0.00 0.00 0.00 4.24
702 703 1.670811 CGGGAATGAAATACGCTGCTT 59.329 47.619 0.00 0.00 0.00 3.91
703 704 2.539547 CGGGAATGAAATACGCTGCTTG 60.540 50.000 0.00 0.00 0.00 4.01
704 705 2.423538 GGGAATGAAATACGCTGCTTGT 59.576 45.455 0.00 0.00 0.00 3.16
705 706 3.119495 GGGAATGAAATACGCTGCTTGTT 60.119 43.478 0.00 0.00 0.00 2.83
706 707 4.095782 GGGAATGAAATACGCTGCTTGTTA 59.904 41.667 0.00 0.00 0.00 2.41
707 708 5.266242 GGAATGAAATACGCTGCTTGTTAG 58.734 41.667 0.00 0.00 0.00 2.34
708 709 5.163754 GGAATGAAATACGCTGCTTGTTAGT 60.164 40.000 0.00 0.00 0.00 2.24
709 710 5.880054 ATGAAATACGCTGCTTGTTAGTT 57.120 34.783 0.00 0.00 0.00 2.24
710 711 5.029650 TGAAATACGCTGCTTGTTAGTTG 57.970 39.130 0.00 0.00 0.00 3.16
711 712 4.513692 TGAAATACGCTGCTTGTTAGTTGT 59.486 37.500 0.00 0.00 0.00 3.32
712 713 5.008217 TGAAATACGCTGCTTGTTAGTTGTT 59.992 36.000 0.00 0.00 0.00 2.83
713 714 5.432885 AATACGCTGCTTGTTAGTTGTTT 57.567 34.783 0.00 0.00 0.00 2.83
714 715 3.775661 ACGCTGCTTGTTAGTTGTTTT 57.224 38.095 0.00 0.00 0.00 2.43
715 716 4.104696 ACGCTGCTTGTTAGTTGTTTTT 57.895 36.364 0.00 0.00 0.00 1.94
716 717 5.238006 ACGCTGCTTGTTAGTTGTTTTTA 57.762 34.783 0.00 0.00 0.00 1.52
717 718 5.270853 ACGCTGCTTGTTAGTTGTTTTTAG 58.729 37.500 0.00 0.00 0.00 1.85
718 719 4.146443 CGCTGCTTGTTAGTTGTTTTTAGC 59.854 41.667 0.00 0.00 0.00 3.09
719 720 4.146443 GCTGCTTGTTAGTTGTTTTTAGCG 59.854 41.667 0.00 0.00 0.00 4.26
720 721 5.238006 TGCTTGTTAGTTGTTTTTAGCGT 57.762 34.783 0.00 0.00 0.00 5.07
721 722 6.360844 TGCTTGTTAGTTGTTTTTAGCGTA 57.639 33.333 0.00 0.00 0.00 4.42
722 723 6.783162 TGCTTGTTAGTTGTTTTTAGCGTAA 58.217 32.000 0.00 0.00 0.00 3.18
723 724 6.687958 TGCTTGTTAGTTGTTTTTAGCGTAAC 59.312 34.615 0.00 0.00 0.00 2.50
724 725 6.687958 GCTTGTTAGTTGTTTTTAGCGTAACA 59.312 34.615 0.00 0.00 32.76 2.41
725 726 7.377662 GCTTGTTAGTTGTTTTTAGCGTAACAT 59.622 33.333 0.00 0.00 34.52 2.71
726 727 9.228636 CTTGTTAGTTGTTTTTAGCGTAACATT 57.771 29.630 0.00 0.00 34.52 2.71
727 728 9.570488 TTGTTAGTTGTTTTTAGCGTAACATTT 57.430 25.926 0.00 0.00 34.52 2.32
728 729 9.570488 TGTTAGTTGTTTTTAGCGTAACATTTT 57.430 25.926 0.00 0.00 34.52 1.82
768 769 9.760077 AGCGTAATAATAATGTACTTACTGCTT 57.240 29.630 0.00 0.00 33.10 3.91
784 785 1.379527 GCTTACAAGCCCGCATAAGT 58.620 50.000 2.40 0.00 46.20 2.24
785 786 1.064060 GCTTACAAGCCCGCATAAGTG 59.936 52.381 2.40 0.00 46.20 3.16
786 787 1.670811 CTTACAAGCCCGCATAAGTGG 59.329 52.381 0.00 0.00 45.25 4.00
793 794 4.635769 CGCATAAGTGGGGCTTCA 57.364 55.556 0.00 0.00 38.57 3.02
794 795 3.100545 CGCATAAGTGGGGCTTCAT 57.899 52.632 0.00 0.00 38.57 2.57
795 796 2.254546 CGCATAAGTGGGGCTTCATA 57.745 50.000 0.00 0.00 38.57 2.15
796 797 2.571212 CGCATAAGTGGGGCTTCATAA 58.429 47.619 0.00 0.00 38.57 1.90
797 798 2.549754 CGCATAAGTGGGGCTTCATAAG 59.450 50.000 0.00 0.00 38.57 1.73
810 811 3.744660 CTTCATAAGCCCGATAAAGCCT 58.255 45.455 0.00 0.00 0.00 4.58
811 812 4.894784 CTTCATAAGCCCGATAAAGCCTA 58.105 43.478 0.00 0.00 0.00 3.93
812 813 5.491982 CTTCATAAGCCCGATAAAGCCTAT 58.508 41.667 0.00 0.00 0.00 2.57
813 814 6.614694 TTCATAAGCCCGATAAAGCCTATA 57.385 37.500 0.00 0.00 0.00 1.31
814 815 6.614694 TCATAAGCCCGATAAAGCCTATAA 57.385 37.500 0.00 0.00 0.00 0.98
815 816 7.011499 TCATAAGCCCGATAAAGCCTATAAA 57.989 36.000 0.00 0.00 0.00 1.40
816 817 6.877322 TCATAAGCCCGATAAAGCCTATAAAC 59.123 38.462 0.00 0.00 0.00 2.01
817 818 4.976540 AGCCCGATAAAGCCTATAAACT 57.023 40.909 0.00 0.00 0.00 2.66
818 819 4.642429 AGCCCGATAAAGCCTATAAACTG 58.358 43.478 0.00 0.00 0.00 3.16
819 820 4.347000 AGCCCGATAAAGCCTATAAACTGA 59.653 41.667 0.00 0.00 0.00 3.41
820 821 5.013183 AGCCCGATAAAGCCTATAAACTGAT 59.987 40.000 0.00 0.00 0.00 2.90
821 822 5.705905 GCCCGATAAAGCCTATAAACTGATT 59.294 40.000 0.00 0.00 0.00 2.57
822 823 6.206829 GCCCGATAAAGCCTATAAACTGATTT 59.793 38.462 0.00 0.00 0.00 2.17
823 824 7.584987 CCCGATAAAGCCTATAAACTGATTTG 58.415 38.462 0.00 0.00 0.00 2.32
824 825 7.228706 CCCGATAAAGCCTATAAACTGATTTGT 59.771 37.037 0.00 0.00 0.00 2.83
825 826 9.268268 CCGATAAAGCCTATAAACTGATTTGTA 57.732 33.333 0.00 0.00 0.00 2.41
837 838 3.945285 ACTGATTTGTACAATAAGGCCCG 59.055 43.478 9.56 0.00 0.00 6.13
838 839 3.283751 TGATTTGTACAATAAGGCCCGG 58.716 45.455 9.56 0.00 0.00 5.73
900 903 0.608130 CCCGTCTCTCACATCCAACA 59.392 55.000 0.00 0.00 0.00 3.33
963 966 1.037030 CCACACAACACAAGCCCACT 61.037 55.000 0.00 0.00 0.00 4.00
1227 1250 2.488355 GGCGAGTCCGACGATGAA 59.512 61.111 0.00 0.00 38.22 2.57
1581 1604 0.251341 GGGCCAAGCAGAAGGAGAAA 60.251 55.000 4.39 0.00 0.00 2.52
1602 1625 3.968265 AGAGAAGAGAGAGAAGGACCTG 58.032 50.000 0.00 0.00 0.00 4.00
1704 1727 4.012895 GTGGTGCGCAGGAACGTG 62.013 66.667 12.22 0.00 39.81 4.49
1891 1917 9.669353 CTGTAATTCACTTTTGGCATGATATAC 57.331 33.333 0.00 0.00 0.00 1.47
1921 1947 1.549203 CACTGGGTTTTGGGATGGAG 58.451 55.000 0.00 0.00 0.00 3.86
1933 1959 7.172532 GGTTTTGGGATGGAGTTTTTATTCAAC 59.827 37.037 0.00 0.00 0.00 3.18
1937 1963 7.235079 TGGGATGGAGTTTTTATTCAACACTA 58.765 34.615 0.00 0.00 0.00 2.74
2002 2030 6.127869 CCTCGTATGAATCTACCAGGATACAG 60.128 46.154 0.00 0.00 33.28 2.74
2082 2111 6.357367 ACTTCACATCCTCTTGTTTACTTGT 58.643 36.000 0.00 0.00 0.00 3.16
2083 2112 6.828785 ACTTCACATCCTCTTGTTTACTTGTT 59.171 34.615 0.00 0.00 0.00 2.83
2084 2113 7.990886 ACTTCACATCCTCTTGTTTACTTGTTA 59.009 33.333 0.00 0.00 0.00 2.41
2085 2114 8.918202 TTCACATCCTCTTGTTTACTTGTTAT 57.082 30.769 0.00 0.00 0.00 1.89
2087 2116 9.431887 TCACATCCTCTTGTTTACTTGTTATAC 57.568 33.333 0.00 0.00 0.00 1.47
2088 2117 9.214957 CACATCCTCTTGTTTACTTGTTATACA 57.785 33.333 0.00 0.00 0.00 2.29
2089 2118 9.216117 ACATCCTCTTGTTTACTTGTTATACAC 57.784 33.333 0.00 0.00 0.00 2.90
2136 2165 9.908152 AAGTGCATTGGAACTTTTATAACTTAC 57.092 29.630 0.00 0.00 40.10 2.34
2226 2255 7.787424 AGGAGCACCTTTAATCTACTCTCTTAT 59.213 37.037 0.00 0.00 45.36 1.73
2227 2256 9.080097 GGAGCACCTTTAATCTACTCTCTTATA 57.920 37.037 0.00 0.00 0.00 0.98
2286 2315 6.879400 AGATCAAACATAGGTAGACCACTTC 58.121 40.000 0.66 0.00 38.89 3.01
2325 2354 2.364632 TGTTGTCCACTTTGGTGTGAG 58.635 47.619 0.00 0.00 41.53 3.51
2328 2357 1.217882 GTCCACTTTGGTGTGAGTCG 58.782 55.000 0.00 0.00 41.53 4.18
2363 2394 7.817440 TCCTCTTAGTGACCTATTCTGATACT 58.183 38.462 0.00 0.00 0.00 2.12
2404 2435 6.612456 TGATGAAGATGGGCCAGAATTATTTT 59.388 34.615 13.78 0.00 0.00 1.82
2470 2507 1.285962 ACTGGTGATCATTCCCCAAGG 59.714 52.381 0.00 0.00 0.00 3.61
2572 2609 6.374053 TCATTGCTCCTTCGTTTCATTATCAA 59.626 34.615 0.00 0.00 0.00 2.57
2639 2681 7.730364 TCCTCTTGAATGTTCAAAACTCTAC 57.270 36.000 9.24 0.00 45.61 2.59
2640 2682 7.509546 TCCTCTTGAATGTTCAAAACTCTACT 58.490 34.615 9.24 0.00 45.61 2.57
2676 2720 7.667043 TCATATTGTGTTGGTCTTACTGAAC 57.333 36.000 0.00 0.00 0.00 3.18
2704 2748 3.229552 GCACTTGTGCTTCTCGATTTTC 58.770 45.455 17.36 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 7.325338 GCGGACTTTTACAAAATAGGAAGTTTC 59.675 37.037 0.00 0.00 0.00 2.78
54 55 7.143340 GCGGACTTTTACAAAATAGGAAGTTT 58.857 34.615 0.00 0.00 0.00 2.66
55 56 6.263617 TGCGGACTTTTACAAAATAGGAAGTT 59.736 34.615 0.00 0.00 0.00 2.66
56 57 5.766174 TGCGGACTTTTACAAAATAGGAAGT 59.234 36.000 0.00 0.00 0.00 3.01
57 58 6.249035 TGCGGACTTTTACAAAATAGGAAG 57.751 37.500 0.00 0.00 0.00 3.46
58 59 6.636562 TTGCGGACTTTTACAAAATAGGAA 57.363 33.333 0.00 0.00 0.00 3.36
59 60 6.636562 TTTGCGGACTTTTACAAAATAGGA 57.363 33.333 0.00 0.00 0.00 2.94
60 61 7.701809 TTTTTGCGGACTTTTACAAAATAGG 57.298 32.000 0.00 0.00 40.53 2.57
147 148 7.386059 AGCCTTTTACCGAAATTTCATGAAAT 58.614 30.769 24.83 24.83 42.35 2.17
148 149 6.754193 AGCCTTTTACCGAAATTTCATGAAA 58.246 32.000 22.52 22.52 34.46 2.69
149 150 6.015856 TGAGCCTTTTACCGAAATTTCATGAA 60.016 34.615 17.99 3.38 0.00 2.57
150 151 5.475220 TGAGCCTTTTACCGAAATTTCATGA 59.525 36.000 17.99 0.00 0.00 3.07
151 152 5.708948 TGAGCCTTTTACCGAAATTTCATG 58.291 37.500 17.99 10.50 0.00 3.07
152 153 5.975693 TGAGCCTTTTACCGAAATTTCAT 57.024 34.783 17.99 7.94 0.00 2.57
153 154 5.475220 TCATGAGCCTTTTACCGAAATTTCA 59.525 36.000 17.99 0.00 0.00 2.69
154 155 5.949735 TCATGAGCCTTTTACCGAAATTTC 58.050 37.500 8.20 8.20 0.00 2.17
155 156 5.975693 TCATGAGCCTTTTACCGAAATTT 57.024 34.783 0.00 0.00 0.00 1.82
156 157 5.975693 TTCATGAGCCTTTTACCGAAATT 57.024 34.783 0.00 0.00 0.00 1.82
157 158 6.378280 AGAATTCATGAGCCTTTTACCGAAAT 59.622 34.615 8.44 0.00 0.00 2.17
158 159 5.710099 AGAATTCATGAGCCTTTTACCGAAA 59.290 36.000 8.44 0.00 0.00 3.46
159 160 5.253330 AGAATTCATGAGCCTTTTACCGAA 58.747 37.500 8.44 0.00 0.00 4.30
160 161 4.843728 AGAATTCATGAGCCTTTTACCGA 58.156 39.130 8.44 0.00 0.00 4.69
161 162 4.635765 TGAGAATTCATGAGCCTTTTACCG 59.364 41.667 8.44 0.00 0.00 4.02
162 163 6.515272 TTGAGAATTCATGAGCCTTTTACC 57.485 37.500 8.44 0.00 32.27 2.85
163 164 8.816640 TTTTTGAGAATTCATGAGCCTTTTAC 57.183 30.769 8.44 0.00 32.27 2.01
164 165 8.641541 ACTTTTTGAGAATTCATGAGCCTTTTA 58.358 29.630 8.44 0.00 32.27 1.52
165 166 7.503549 ACTTTTTGAGAATTCATGAGCCTTTT 58.496 30.769 8.44 0.00 32.27 2.27
166 167 7.059202 ACTTTTTGAGAATTCATGAGCCTTT 57.941 32.000 8.44 0.00 32.27 3.11
167 168 6.661304 ACTTTTTGAGAATTCATGAGCCTT 57.339 33.333 8.44 0.00 32.27 4.35
168 169 6.266103 TGAACTTTTTGAGAATTCATGAGCCT 59.734 34.615 8.44 0.00 32.27 4.58
169 170 6.449698 TGAACTTTTTGAGAATTCATGAGCC 58.550 36.000 8.44 0.00 32.27 4.70
170 171 7.864379 TCTTGAACTTTTTGAGAATTCATGAGC 59.136 33.333 8.44 0.00 31.98 4.26
171 172 9.178427 GTCTTGAACTTTTTGAGAATTCATGAG 57.822 33.333 8.44 0.00 35.42 2.90
172 173 8.906867 AGTCTTGAACTTTTTGAGAATTCATGA 58.093 29.630 8.44 0.00 33.03 3.07
173 174 9.525409 AAGTCTTGAACTTTTTGAGAATTCATG 57.475 29.630 8.44 0.00 46.26 3.07
174 175 9.525409 CAAGTCTTGAACTTTTTGAGAATTCAT 57.475 29.630 6.76 0.00 46.26 2.57
175 176 7.975616 CCAAGTCTTGAACTTTTTGAGAATTCA 59.024 33.333 14.42 0.00 46.26 2.57
176 177 8.190784 TCCAAGTCTTGAACTTTTTGAGAATTC 58.809 33.333 14.42 0.00 46.26 2.17
177 178 8.066612 TCCAAGTCTTGAACTTTTTGAGAATT 57.933 30.769 14.42 0.00 46.26 2.17
178 179 7.645058 TCCAAGTCTTGAACTTTTTGAGAAT 57.355 32.000 14.42 0.00 46.26 2.40
179 180 7.461182 TTCCAAGTCTTGAACTTTTTGAGAA 57.539 32.000 14.42 2.34 46.26 2.87
180 181 7.461182 TTTCCAAGTCTTGAACTTTTTGAGA 57.539 32.000 14.42 0.00 46.26 3.27
181 182 8.707938 ATTTTCCAAGTCTTGAACTTTTTGAG 57.292 30.769 14.42 0.00 46.26 3.02
182 183 8.934825 CAATTTTCCAAGTCTTGAACTTTTTGA 58.065 29.630 14.42 0.00 46.26 2.69
183 184 8.720562 ACAATTTTCCAAGTCTTGAACTTTTTG 58.279 29.630 14.42 11.70 46.26 2.44
184 185 8.846943 ACAATTTTCCAAGTCTTGAACTTTTT 57.153 26.923 14.42 0.00 46.26 1.94
185 186 9.936759 TTACAATTTTCCAAGTCTTGAACTTTT 57.063 25.926 14.42 0.00 46.26 2.27
191 192 9.581289 TCCTAATTACAATTTTCCAAGTCTTGA 57.419 29.630 14.42 0.00 0.00 3.02
252 253 9.757227 TCATGGTTTTTAGAAATTTCGTGATTT 57.243 25.926 12.42 0.00 32.16 2.17
253 254 9.757227 TTCATGGTTTTTAGAAATTTCGTGATT 57.243 25.926 12.42 0.00 0.00 2.57
254 255 9.927668 ATTCATGGTTTTTAGAAATTTCGTGAT 57.072 25.926 12.42 0.00 0.00 3.06
255 256 9.757227 AATTCATGGTTTTTAGAAATTTCGTGA 57.243 25.926 12.42 1.86 0.00 4.35
266 267 9.868389 GCTTTTTCTCAAATTCATGGTTTTTAG 57.132 29.630 0.00 0.00 0.00 1.85
267 268 9.612066 AGCTTTTTCTCAAATTCATGGTTTTTA 57.388 25.926 0.00 0.00 0.00 1.52
268 269 8.510243 AGCTTTTTCTCAAATTCATGGTTTTT 57.490 26.923 0.00 0.00 0.00 1.94
269 270 7.042523 CGAGCTTTTTCTCAAATTCATGGTTTT 60.043 33.333 0.00 0.00 33.41 2.43
270 271 6.421801 CGAGCTTTTTCTCAAATTCATGGTTT 59.578 34.615 0.00 0.00 33.41 3.27
271 272 5.922544 CGAGCTTTTTCTCAAATTCATGGTT 59.077 36.000 0.00 0.00 33.41 3.67
272 273 5.010012 ACGAGCTTTTTCTCAAATTCATGGT 59.990 36.000 0.00 0.00 33.41 3.55
273 274 5.344128 CACGAGCTTTTTCTCAAATTCATGG 59.656 40.000 0.00 0.00 33.41 3.66
274 275 5.344128 CCACGAGCTTTTTCTCAAATTCATG 59.656 40.000 0.00 0.00 33.41 3.07
275 276 5.241506 TCCACGAGCTTTTTCTCAAATTCAT 59.758 36.000 0.00 0.00 33.41 2.57
276 277 4.578516 TCCACGAGCTTTTTCTCAAATTCA 59.421 37.500 0.00 0.00 33.41 2.57
277 278 5.108385 TCCACGAGCTTTTTCTCAAATTC 57.892 39.130 0.00 0.00 33.41 2.17
278 279 5.712152 ATCCACGAGCTTTTTCTCAAATT 57.288 34.783 0.00 0.00 33.41 1.82
279 280 5.712152 AATCCACGAGCTTTTTCTCAAAT 57.288 34.783 0.00 0.00 33.41 2.32
280 281 5.514274 AAATCCACGAGCTTTTTCTCAAA 57.486 34.783 0.00 0.00 33.41 2.69
281 282 6.627395 TTAAATCCACGAGCTTTTTCTCAA 57.373 33.333 0.00 0.00 33.41 3.02
282 283 6.627395 TTTAAATCCACGAGCTTTTTCTCA 57.373 33.333 0.00 0.00 33.41 3.27
283 284 7.924103 TTTTTAAATCCACGAGCTTTTTCTC 57.076 32.000 0.00 0.00 0.00 2.87
383 384 8.631676 TTTAAACCGTTTCCAAGTTTATGAAC 57.368 30.769 0.00 0.00 36.24 3.18
384 385 8.684520 TCTTTAAACCGTTTCCAAGTTTATGAA 58.315 29.630 0.00 0.00 36.24 2.57
385 386 8.223177 TCTTTAAACCGTTTCCAAGTTTATGA 57.777 30.769 0.00 0.00 36.24 2.15
386 387 8.859517 TTCTTTAAACCGTTTCCAAGTTTATG 57.140 30.769 0.00 0.00 36.24 1.90
387 388 9.471084 CATTCTTTAAACCGTTTCCAAGTTTAT 57.529 29.630 0.00 0.00 36.24 1.40
388 389 7.921745 CCATTCTTTAAACCGTTTCCAAGTTTA 59.078 33.333 0.00 0.00 35.45 2.01
389 390 6.759356 CCATTCTTTAAACCGTTTCCAAGTTT 59.241 34.615 0.00 0.00 37.47 2.66
390 391 6.097129 TCCATTCTTTAAACCGTTTCCAAGTT 59.903 34.615 0.00 0.00 0.00 2.66
391 392 5.595133 TCCATTCTTTAAACCGTTTCCAAGT 59.405 36.000 0.00 0.00 0.00 3.16
392 393 6.016610 TCTCCATTCTTTAAACCGTTTCCAAG 60.017 38.462 0.00 4.88 0.00 3.61
393 394 5.828859 TCTCCATTCTTTAAACCGTTTCCAA 59.171 36.000 0.00 0.00 0.00 3.53
394 395 5.378332 TCTCCATTCTTTAAACCGTTTCCA 58.622 37.500 0.00 0.00 0.00 3.53
395 396 5.952526 TCTCCATTCTTTAAACCGTTTCC 57.047 39.130 0.00 0.00 0.00 3.13
396 397 8.699749 CATTTTCTCCATTCTTTAAACCGTTTC 58.300 33.333 0.00 0.00 0.00 2.78
397 398 8.201464 ACATTTTCTCCATTCTTTAAACCGTTT 58.799 29.630 1.40 1.40 0.00 3.60
398 399 7.722363 ACATTTTCTCCATTCTTTAAACCGTT 58.278 30.769 0.00 0.00 0.00 4.44
399 400 7.284919 ACATTTTCTCCATTCTTTAAACCGT 57.715 32.000 0.00 0.00 0.00 4.83
400 401 9.124807 GTTACATTTTCTCCATTCTTTAAACCG 57.875 33.333 0.00 0.00 0.00 4.44
401 402 9.124807 CGTTACATTTTCTCCATTCTTTAAACC 57.875 33.333 0.00 0.00 0.00 3.27
402 403 9.887406 TCGTTACATTTTCTCCATTCTTTAAAC 57.113 29.630 0.00 0.00 0.00 2.01
406 407 9.981114 AAATTCGTTACATTTTCTCCATTCTTT 57.019 25.926 0.00 0.00 0.00 2.52
407 408 9.410556 CAAATTCGTTACATTTTCTCCATTCTT 57.589 29.630 0.00 0.00 0.00 2.52
408 409 8.792633 TCAAATTCGTTACATTTTCTCCATTCT 58.207 29.630 0.00 0.00 0.00 2.40
409 410 8.850452 GTCAAATTCGTTACATTTTCTCCATTC 58.150 33.333 0.00 0.00 0.00 2.67
410 411 8.356657 TGTCAAATTCGTTACATTTTCTCCATT 58.643 29.630 0.00 0.00 0.00 3.16
411 412 7.881142 TGTCAAATTCGTTACATTTTCTCCAT 58.119 30.769 0.00 0.00 0.00 3.41
412 413 7.265647 TGTCAAATTCGTTACATTTTCTCCA 57.734 32.000 0.00 0.00 0.00 3.86
413 414 8.568732 TTTGTCAAATTCGTTACATTTTCTCC 57.431 30.769 0.00 0.00 0.00 3.71
415 416 9.581099 ACTTTTGTCAAATTCGTTACATTTTCT 57.419 25.926 0.00 0.00 0.00 2.52
478 479 9.051679 CCGGTTCATTTCTTTTCCTTTTATTTT 57.948 29.630 0.00 0.00 0.00 1.82
479 480 8.208224 ACCGGTTCATTTCTTTTCCTTTTATTT 58.792 29.630 0.00 0.00 0.00 1.40
480 481 7.655732 CACCGGTTCATTTCTTTTCCTTTTATT 59.344 33.333 2.97 0.00 0.00 1.40
481 482 7.151976 CACCGGTTCATTTCTTTTCCTTTTAT 58.848 34.615 2.97 0.00 0.00 1.40
482 483 6.097129 ACACCGGTTCATTTCTTTTCCTTTTA 59.903 34.615 2.97 0.00 0.00 1.52
483 484 5.105106 ACACCGGTTCATTTCTTTTCCTTTT 60.105 36.000 2.97 0.00 0.00 2.27
484 485 4.404394 ACACCGGTTCATTTCTTTTCCTTT 59.596 37.500 2.97 0.00 0.00 3.11
485 486 3.958147 ACACCGGTTCATTTCTTTTCCTT 59.042 39.130 2.97 0.00 0.00 3.36
486 487 3.562182 ACACCGGTTCATTTCTTTTCCT 58.438 40.909 2.97 0.00 0.00 3.36
487 488 5.441709 TTACACCGGTTCATTTCTTTTCC 57.558 39.130 2.97 0.00 0.00 3.13
488 489 7.275999 TGTTTTTACACCGGTTCATTTCTTTTC 59.724 33.333 2.97 0.00 0.00 2.29
489 490 7.097834 TGTTTTTACACCGGTTCATTTCTTTT 58.902 30.769 2.97 0.00 0.00 2.27
490 491 6.631962 TGTTTTTACACCGGTTCATTTCTTT 58.368 32.000 2.97 0.00 0.00 2.52
491 492 6.210287 TGTTTTTACACCGGTTCATTTCTT 57.790 33.333 2.97 0.00 0.00 2.52
492 493 5.838531 TGTTTTTACACCGGTTCATTTCT 57.161 34.783 2.97 0.00 0.00 2.52
493 494 5.980715 ACATGTTTTTACACCGGTTCATTTC 59.019 36.000 2.97 0.00 0.00 2.17
494 495 5.908341 ACATGTTTTTACACCGGTTCATTT 58.092 33.333 2.97 0.00 0.00 2.32
495 496 5.067936 TGACATGTTTTTACACCGGTTCATT 59.932 36.000 2.97 0.00 0.00 2.57
496 497 4.580995 TGACATGTTTTTACACCGGTTCAT 59.419 37.500 2.97 0.00 0.00 2.57
497 498 3.945921 TGACATGTTTTTACACCGGTTCA 59.054 39.130 2.97 0.00 0.00 3.18
498 499 4.273969 TCTGACATGTTTTTACACCGGTTC 59.726 41.667 2.97 0.00 0.00 3.62
499 500 4.200874 TCTGACATGTTTTTACACCGGTT 58.799 39.130 2.97 0.00 0.00 4.44
500 501 3.811083 TCTGACATGTTTTTACACCGGT 58.189 40.909 0.00 0.00 0.00 5.28
501 502 4.822036 TTCTGACATGTTTTTACACCGG 57.178 40.909 0.00 0.00 0.00 5.28
525 526 9.562408 TGGTTTTCTTTTGTTTTTCTTTAGGTT 57.438 25.926 0.00 0.00 0.00 3.50
526 527 9.733556 ATGGTTTTCTTTTGTTTTTCTTTAGGT 57.266 25.926 0.00 0.00 0.00 3.08
531 532 9.508642 TGGTAATGGTTTTCTTTTGTTTTTCTT 57.491 25.926 0.00 0.00 0.00 2.52
532 533 9.508642 TTGGTAATGGTTTTCTTTTGTTTTTCT 57.491 25.926 0.00 0.00 0.00 2.52
536 537 9.290988 ACTTTTGGTAATGGTTTTCTTTTGTTT 57.709 25.926 0.00 0.00 0.00 2.83
537 538 8.856153 ACTTTTGGTAATGGTTTTCTTTTGTT 57.144 26.923 0.00 0.00 0.00 2.83
538 539 8.856153 AACTTTTGGTAATGGTTTTCTTTTGT 57.144 26.923 0.00 0.00 0.00 2.83
544 545 9.991388 GGTTTTTAACTTTTGGTAATGGTTTTC 57.009 29.630 0.00 0.00 30.81 2.29
545 546 9.516546 TGGTTTTTAACTTTTGGTAATGGTTTT 57.483 25.926 0.00 0.00 30.81 2.43
546 547 9.516546 TTGGTTTTTAACTTTTGGTAATGGTTT 57.483 25.926 0.00 0.00 30.81 3.27
547 548 9.688091 ATTGGTTTTTAACTTTTGGTAATGGTT 57.312 25.926 0.00 0.00 30.81 3.67
558 559 9.386010 GGTGGTTTCTTATTGGTTTTTAACTTT 57.614 29.630 0.00 0.00 0.00 2.66
559 560 8.541234 TGGTGGTTTCTTATTGGTTTTTAACTT 58.459 29.630 0.00 0.00 0.00 2.66
560 561 8.080363 TGGTGGTTTCTTATTGGTTTTTAACT 57.920 30.769 0.00 0.00 0.00 2.24
561 562 8.719560 TTGGTGGTTTCTTATTGGTTTTTAAC 57.280 30.769 0.00 0.00 0.00 2.01
562 563 8.759782 TCTTGGTGGTTTCTTATTGGTTTTTAA 58.240 29.630 0.00 0.00 0.00 1.52
563 564 8.307582 TCTTGGTGGTTTCTTATTGGTTTTTA 57.692 30.769 0.00 0.00 0.00 1.52
564 565 7.189079 TCTTGGTGGTTTCTTATTGGTTTTT 57.811 32.000 0.00 0.00 0.00 1.94
565 566 6.800072 TCTTGGTGGTTTCTTATTGGTTTT 57.200 33.333 0.00 0.00 0.00 2.43
566 567 6.800072 TTCTTGGTGGTTTCTTATTGGTTT 57.200 33.333 0.00 0.00 0.00 3.27
567 568 6.800072 TTTCTTGGTGGTTTCTTATTGGTT 57.200 33.333 0.00 0.00 0.00 3.67
568 569 6.800072 TTTTCTTGGTGGTTTCTTATTGGT 57.200 33.333 0.00 0.00 0.00 3.67
590 591 1.500512 TAGTTGCGGCGCGAGTTTTT 61.501 50.000 32.17 13.68 0.00 1.94
591 592 1.957186 TAGTTGCGGCGCGAGTTTT 60.957 52.632 32.17 16.01 0.00 2.43
592 593 2.356553 TAGTTGCGGCGCGAGTTT 60.357 55.556 32.17 18.38 0.00 2.66
593 594 3.110178 GTAGTTGCGGCGCGAGTT 61.110 61.111 32.17 20.78 0.00 3.01
594 595 3.734682 TATTGTAGTTGCGGCGCGAGT 62.735 52.381 30.21 30.21 0.00 4.18
595 596 1.143373 TATTGTAGTTGCGGCGCGAG 61.143 55.000 28.09 3.39 0.00 5.03
596 597 1.153804 TATTGTAGTTGCGGCGCGA 60.154 52.632 28.09 24.12 0.00 5.87
597 598 1.012671 GTATTGTAGTTGCGGCGCG 60.013 57.895 28.09 0.00 0.00 6.86
598 599 0.725117 AAGTATTGTAGTTGCGGCGC 59.275 50.000 27.44 27.44 0.00 6.53
599 600 2.435685 CAAGTATTGTAGTTGCGGCG 57.564 50.000 0.51 0.51 42.34 6.46
611 612 2.167900 GGTACTGAGCCGGTCAAGTATT 59.832 50.000 1.90 0.00 33.60 1.89
612 613 1.755380 GGTACTGAGCCGGTCAAGTAT 59.245 52.381 1.90 0.00 33.60 2.12
613 614 1.180029 GGTACTGAGCCGGTCAAGTA 58.820 55.000 1.90 5.74 33.60 2.24
614 615 1.874345 CGGTACTGAGCCGGTCAAGT 61.874 60.000 1.90 6.81 44.98 3.16
615 616 1.153823 CGGTACTGAGCCGGTCAAG 60.154 63.158 1.90 0.00 44.98 3.02
616 617 2.967397 CGGTACTGAGCCGGTCAA 59.033 61.111 1.90 0.00 44.98 3.18
624 625 3.989698 CTGGCACGGCGGTACTGAG 62.990 68.421 13.24 0.67 0.00 3.35
625 626 4.063967 CTGGCACGGCGGTACTGA 62.064 66.667 13.24 0.00 0.00 3.41
626 627 3.989698 CTCTGGCACGGCGGTACTG 62.990 68.421 13.24 0.40 32.53 2.74
627 628 3.760035 CTCTGGCACGGCGGTACT 61.760 66.667 13.24 0.00 32.53 2.73
628 629 4.814294 CCTCTGGCACGGCGGTAC 62.814 72.222 13.24 0.22 34.30 3.34
638 639 2.202946 GCTAACCTCGCCTCTGGC 60.203 66.667 0.00 0.00 46.75 4.85
639 640 2.105128 CGCTAACCTCGCCTCTGG 59.895 66.667 0.00 0.00 0.00 3.86
640 641 1.064946 CTCGCTAACCTCGCCTCTG 59.935 63.158 0.00 0.00 0.00 3.35
641 642 0.680280 TTCTCGCTAACCTCGCCTCT 60.680 55.000 0.00 0.00 0.00 3.69
642 643 0.172803 TTTCTCGCTAACCTCGCCTC 59.827 55.000 0.00 0.00 0.00 4.70
643 644 0.824759 ATTTCTCGCTAACCTCGCCT 59.175 50.000 0.00 0.00 0.00 5.52
644 645 2.034305 TCTATTTCTCGCTAACCTCGCC 59.966 50.000 0.00 0.00 0.00 5.54
645 646 3.044286 GTCTATTTCTCGCTAACCTCGC 58.956 50.000 0.00 0.00 0.00 5.03
646 647 3.315749 AGGTCTATTTCTCGCTAACCTCG 59.684 47.826 0.00 0.00 29.85 4.63
647 648 4.922471 AGGTCTATTTCTCGCTAACCTC 57.078 45.455 0.00 0.00 29.85 3.85
648 649 5.299782 CACTAGGTCTATTTCTCGCTAACCT 59.700 44.000 0.00 0.00 39.01 3.50
649 650 5.067544 ACACTAGGTCTATTTCTCGCTAACC 59.932 44.000 0.00 0.00 0.00 2.85
650 651 5.972382 CACACTAGGTCTATTTCTCGCTAAC 59.028 44.000 0.00 0.00 0.00 2.34
651 652 5.884232 TCACACTAGGTCTATTTCTCGCTAA 59.116 40.000 0.00 0.00 0.00 3.09
652 653 5.434408 TCACACTAGGTCTATTTCTCGCTA 58.566 41.667 0.00 0.00 0.00 4.26
653 654 4.270834 TCACACTAGGTCTATTTCTCGCT 58.729 43.478 0.00 0.00 0.00 4.93
654 655 4.634184 TCACACTAGGTCTATTTCTCGC 57.366 45.455 0.00 0.00 0.00 5.03
655 656 6.202937 GTCATCACACTAGGTCTATTTCTCG 58.797 44.000 0.00 0.00 0.00 4.04
656 657 6.202937 CGTCATCACACTAGGTCTATTTCTC 58.797 44.000 0.00 0.00 0.00 2.87
657 658 5.067936 CCGTCATCACACTAGGTCTATTTCT 59.932 44.000 0.00 0.00 0.00 2.52
658 659 5.282510 CCGTCATCACACTAGGTCTATTTC 58.717 45.833 0.00 0.00 0.00 2.17
659 660 4.441634 GCCGTCATCACACTAGGTCTATTT 60.442 45.833 0.00 0.00 0.00 1.40
660 661 3.068307 GCCGTCATCACACTAGGTCTATT 59.932 47.826 0.00 0.00 0.00 1.73
661 662 2.623889 GCCGTCATCACACTAGGTCTAT 59.376 50.000 0.00 0.00 0.00 1.98
662 663 2.022195 GCCGTCATCACACTAGGTCTA 58.978 52.381 0.00 0.00 0.00 2.59
663 664 0.818296 GCCGTCATCACACTAGGTCT 59.182 55.000 0.00 0.00 0.00 3.85
664 665 0.525668 CGCCGTCATCACACTAGGTC 60.526 60.000 0.00 0.00 0.00 3.85
665 666 1.511305 CGCCGTCATCACACTAGGT 59.489 57.895 0.00 0.00 0.00 3.08
666 667 1.226974 CCGCCGTCATCACACTAGG 60.227 63.158 0.00 0.00 0.00 3.02
667 668 1.226974 CCCGCCGTCATCACACTAG 60.227 63.158 0.00 0.00 0.00 2.57
668 669 1.252215 TTCCCGCCGTCATCACACTA 61.252 55.000 0.00 0.00 0.00 2.74
669 670 1.899437 ATTCCCGCCGTCATCACACT 61.899 55.000 0.00 0.00 0.00 3.55
670 671 1.449601 ATTCCCGCCGTCATCACAC 60.450 57.895 0.00 0.00 0.00 3.82
671 672 1.449423 CATTCCCGCCGTCATCACA 60.449 57.895 0.00 0.00 0.00 3.58
672 673 0.742990 TTCATTCCCGCCGTCATCAC 60.743 55.000 0.00 0.00 0.00 3.06
673 674 0.035915 TTTCATTCCCGCCGTCATCA 60.036 50.000 0.00 0.00 0.00 3.07
674 675 1.308998 ATTTCATTCCCGCCGTCATC 58.691 50.000 0.00 0.00 0.00 2.92
675 676 2.218603 GTATTTCATTCCCGCCGTCAT 58.781 47.619 0.00 0.00 0.00 3.06
676 677 1.658994 GTATTTCATTCCCGCCGTCA 58.341 50.000 0.00 0.00 0.00 4.35
677 678 0.580104 CGTATTTCATTCCCGCCGTC 59.420 55.000 0.00 0.00 0.00 4.79
678 679 1.433837 GCGTATTTCATTCCCGCCGT 61.434 55.000 0.00 0.00 38.52 5.68
679 680 1.157870 AGCGTATTTCATTCCCGCCG 61.158 55.000 0.00 0.00 45.06 6.46
680 681 0.307760 CAGCGTATTTCATTCCCGCC 59.692 55.000 0.00 0.00 45.06 6.13
681 682 0.317020 GCAGCGTATTTCATTCCCGC 60.317 55.000 0.00 0.00 44.35 6.13
682 683 1.299541 AGCAGCGTATTTCATTCCCG 58.700 50.000 0.00 0.00 0.00 5.14
683 684 2.423538 ACAAGCAGCGTATTTCATTCCC 59.576 45.455 0.00 0.00 0.00 3.97
684 685 3.764885 ACAAGCAGCGTATTTCATTCC 57.235 42.857 0.00 0.00 0.00 3.01
685 686 5.869350 ACTAACAAGCAGCGTATTTCATTC 58.131 37.500 0.00 0.00 0.00 2.67
686 687 5.880054 ACTAACAAGCAGCGTATTTCATT 57.120 34.783 0.00 0.00 0.00 2.57
687 688 5.181245 ACAACTAACAAGCAGCGTATTTCAT 59.819 36.000 0.00 0.00 0.00 2.57
688 689 4.513692 ACAACTAACAAGCAGCGTATTTCA 59.486 37.500 0.00 0.00 0.00 2.69
689 690 5.030874 ACAACTAACAAGCAGCGTATTTC 57.969 39.130 0.00 0.00 0.00 2.17
690 691 5.432885 AACAACTAACAAGCAGCGTATTT 57.567 34.783 0.00 0.00 0.00 1.40
691 692 5.432885 AAACAACTAACAAGCAGCGTATT 57.567 34.783 0.00 0.00 0.00 1.89
692 693 5.432885 AAAACAACTAACAAGCAGCGTAT 57.567 34.783 0.00 0.00 0.00 3.06
693 694 4.886247 AAAACAACTAACAAGCAGCGTA 57.114 36.364 0.00 0.00 0.00 4.42
694 695 3.775661 AAAACAACTAACAAGCAGCGT 57.224 38.095 0.00 0.00 0.00 5.07
695 696 4.146443 GCTAAAAACAACTAACAAGCAGCG 59.854 41.667 0.00 0.00 0.00 5.18
696 697 4.146443 CGCTAAAAACAACTAACAAGCAGC 59.854 41.667 0.00 0.00 0.00 5.25
697 698 5.270853 ACGCTAAAAACAACTAACAAGCAG 58.729 37.500 0.00 0.00 0.00 4.24
698 699 5.238006 ACGCTAAAAACAACTAACAAGCA 57.762 34.783 0.00 0.00 0.00 3.91
699 700 6.687958 TGTTACGCTAAAAACAACTAACAAGC 59.312 34.615 0.00 0.00 32.86 4.01
700 701 8.776680 ATGTTACGCTAAAAACAACTAACAAG 57.223 30.769 0.00 0.00 38.95 3.16
701 702 9.570488 AAATGTTACGCTAAAAACAACTAACAA 57.430 25.926 0.00 0.00 38.95 2.83
702 703 9.570488 AAAATGTTACGCTAAAAACAACTAACA 57.430 25.926 0.00 0.00 38.95 2.41
742 743 9.760077 AAGCAGTAAGTACATTATTATTACGCT 57.240 29.630 0.00 4.52 37.57 5.07
766 767 1.670811 CCACTTATGCGGGCTTGTAAG 59.329 52.381 0.00 1.69 0.00 2.34
767 768 1.680555 CCCACTTATGCGGGCTTGTAA 60.681 52.381 0.00 0.00 35.09 2.41
768 769 0.107410 CCCACTTATGCGGGCTTGTA 60.107 55.000 0.00 0.00 35.09 2.41
769 770 1.378514 CCCACTTATGCGGGCTTGT 60.379 57.895 0.00 0.00 35.09 3.16
770 771 2.120909 CCCCACTTATGCGGGCTTG 61.121 63.158 0.00 0.00 41.57 4.01
771 772 2.275418 CCCCACTTATGCGGGCTT 59.725 61.111 0.00 0.00 41.57 4.35
774 775 1.823899 GAAGCCCCACTTATGCGGG 60.824 63.158 0.00 0.00 39.29 6.13
775 776 0.466189 ATGAAGCCCCACTTATGCGG 60.466 55.000 0.00 0.00 39.29 5.69
776 777 2.254546 TATGAAGCCCCACTTATGCG 57.745 50.000 0.00 0.00 39.29 4.73
789 790 3.744660 AGGCTTTATCGGGCTTATGAAG 58.255 45.455 0.00 0.00 36.12 3.02
790 791 3.857157 AGGCTTTATCGGGCTTATGAA 57.143 42.857 0.00 0.00 36.12 2.57
791 792 6.614694 TTATAGGCTTTATCGGGCTTATGA 57.385 37.500 0.00 0.00 40.13 2.15
792 793 6.879458 AGTTTATAGGCTTTATCGGGCTTATG 59.121 38.462 0.00 0.00 40.13 1.90
793 794 6.879458 CAGTTTATAGGCTTTATCGGGCTTAT 59.121 38.462 0.00 0.00 40.13 1.73
794 795 6.042322 TCAGTTTATAGGCTTTATCGGGCTTA 59.958 38.462 0.00 0.00 40.13 3.09
795 796 5.063880 CAGTTTATAGGCTTTATCGGGCTT 58.936 41.667 0.00 0.00 40.13 4.35
796 797 4.347000 TCAGTTTATAGGCTTTATCGGGCT 59.653 41.667 0.00 0.00 42.25 5.19
797 798 4.638304 TCAGTTTATAGGCTTTATCGGGC 58.362 43.478 0.00 0.00 0.00 6.13
798 799 7.228706 ACAAATCAGTTTATAGGCTTTATCGGG 59.771 37.037 0.00 0.00 0.00 5.14
799 800 8.154649 ACAAATCAGTTTATAGGCTTTATCGG 57.845 34.615 0.00 0.00 0.00 4.18
810 811 9.127277 GGGCCTTATTGTACAAATCAGTTTATA 57.873 33.333 13.23 0.00 0.00 0.98
811 812 7.201785 CGGGCCTTATTGTACAAATCAGTTTAT 60.202 37.037 13.23 0.00 0.00 1.40
812 813 6.094325 CGGGCCTTATTGTACAAATCAGTTTA 59.906 38.462 13.23 0.00 0.00 2.01
813 814 5.105917 CGGGCCTTATTGTACAAATCAGTTT 60.106 40.000 13.23 0.00 0.00 2.66
814 815 4.398044 CGGGCCTTATTGTACAAATCAGTT 59.602 41.667 13.23 0.00 0.00 3.16
815 816 3.945285 CGGGCCTTATTGTACAAATCAGT 59.055 43.478 13.23 0.00 0.00 3.41
816 817 3.315191 CCGGGCCTTATTGTACAAATCAG 59.685 47.826 13.23 8.52 0.00 2.90
817 818 3.283751 CCGGGCCTTATTGTACAAATCA 58.716 45.455 13.23 0.00 0.00 2.57
818 819 2.034179 GCCGGGCCTTATTGTACAAATC 59.966 50.000 13.23 0.38 0.00 2.17
819 820 2.028876 GCCGGGCCTTATTGTACAAAT 58.971 47.619 13.23 4.23 0.00 2.32
820 821 1.465794 GCCGGGCCTTATTGTACAAA 58.534 50.000 13.23 0.00 0.00 2.83
821 822 0.394625 GGCCGGGCCTTATTGTACAA 60.395 55.000 30.86 11.41 46.69 2.41
822 823 1.225148 GGCCGGGCCTTATTGTACA 59.775 57.895 30.86 0.00 46.69 2.90
823 824 4.152644 GGCCGGGCCTTATTGTAC 57.847 61.111 30.86 0.00 46.69 2.90
842 843 1.419012 CTGCAGGAGATGGGCTTCATA 59.581 52.381 5.57 0.00 35.97 2.15
900 903 2.104170 GGGAACGATCAGAGAGAGGTT 58.896 52.381 0.00 0.00 31.74 3.50
1227 1250 0.966370 CCTCCCCTTCTTCGTCGTCT 60.966 60.000 0.00 0.00 0.00 4.18
1416 1439 4.351938 TCGTGGAACCCGACGCAG 62.352 66.667 0.00 0.00 35.53 5.18
1581 1604 3.591527 TCAGGTCCTTCTCTCTCTTCTCT 59.408 47.826 0.00 0.00 0.00 3.10
1827 1853 5.940470 AGATCAAAAGAGACCGCTTAAACAT 59.060 36.000 0.00 0.00 0.00 2.71
1891 1917 3.368822 CCCAGTGGGCACATTGTG 58.631 61.111 17.33 12.54 35.35 3.33
1908 1934 7.713073 TGTTGAATAAAAACTCCATCCCAAAAC 59.287 33.333 0.00 0.00 0.00 2.43
1933 1959 7.584108 TCAAGAAACAGCACATATTTGTAGTG 58.416 34.615 0.00 0.00 33.76 2.74
1937 1963 6.639632 ACTCAAGAAACAGCACATATTTGT 57.360 33.333 0.00 0.00 36.15 2.83
1988 2016 5.403558 TCTCCAATCTGTATCCTGGTAGA 57.596 43.478 0.00 0.00 0.00 2.59
2002 2030 6.426328 CAGAGGCTTATGTGTTATCTCCAATC 59.574 42.308 0.00 0.00 0.00 2.67
2082 2111 5.758296 GGCTTGCAGCAGTATAAGTGTATAA 59.242 40.000 9.78 0.00 44.75 0.98
2083 2112 5.070446 AGGCTTGCAGCAGTATAAGTGTATA 59.930 40.000 9.78 0.00 44.75 1.47
2084 2113 4.130118 GGCTTGCAGCAGTATAAGTGTAT 58.870 43.478 9.78 0.00 44.75 2.29
2085 2114 3.197766 AGGCTTGCAGCAGTATAAGTGTA 59.802 43.478 9.78 0.00 44.75 2.90
2086 2115 2.026822 AGGCTTGCAGCAGTATAAGTGT 60.027 45.455 9.78 0.00 44.75 3.55
2087 2116 2.353889 CAGGCTTGCAGCAGTATAAGTG 59.646 50.000 9.78 0.00 44.75 3.16
2088 2117 2.026822 ACAGGCTTGCAGCAGTATAAGT 60.027 45.455 9.78 0.00 44.75 2.24
2089 2118 2.636830 ACAGGCTTGCAGCAGTATAAG 58.363 47.619 9.78 0.00 44.75 1.73
2136 2165 3.181524 CCACTACAATTTCACCGCTAACG 60.182 47.826 0.00 0.00 39.67 3.18
2170 2199 7.565398 TCTTCTAGGCTTTAGACATAATCACCT 59.435 37.037 0.00 0.00 0.00 4.00
2184 2213 2.499693 GCTCCTCACTCTTCTAGGCTTT 59.500 50.000 0.00 0.00 0.00 3.51
2286 2315 4.609691 ACAACTAAACAGTGTTTCACCG 57.390 40.909 24.06 13.91 34.49 4.94
2325 2354 6.089685 GTCACTAAGAGGAAATTCAGTTCGAC 59.910 42.308 0.00 0.00 0.00 4.20
2328 2357 6.468543 AGGTCACTAAGAGGAAATTCAGTTC 58.531 40.000 0.00 0.00 0.00 3.01
2363 2394 7.815840 TCTTCATCAATTGTGTTCAAGGTTA 57.184 32.000 5.13 0.00 36.97 2.85
2404 2435 4.855298 AAGGTCGAATCAGGGGATTAAA 57.145 40.909 0.00 0.00 43.69 1.52
2470 2507 8.926715 AAAAACAAACAATCCTACTGAGTTTC 57.073 30.769 0.00 0.00 30.68 2.78
2572 2609 8.149647 CAGCTCTAGAAACCATCTAAAGATCAT 58.850 37.037 0.00 0.00 40.12 2.45
2639 2681 6.258230 ACACAATATGAACATTGTCACCAG 57.742 37.500 0.00 0.00 45.18 4.00
2640 2682 6.445475 CAACACAATATGAACATTGTCACCA 58.555 36.000 0.00 0.00 45.18 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.