Multiple sequence alignment - TraesCS4D01G204500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G204500 chr4D 100.000 4040 0 0 1 4040 352117066 352121105 0.000000e+00 7461.0
1 TraesCS4D01G204500 chr4D 88.587 184 17 2 3371 3550 362792173 362791990 1.890000e-53 220.0
2 TraesCS4D01G204500 chr4B 94.095 2845 106 26 550 3363 435487007 435484194 0.000000e+00 4266.0
3 TraesCS4D01G204500 chr4B 85.572 402 35 10 1 391 435487478 435487089 2.260000e-107 399.0
4 TraesCS4D01G204500 chr4B 87.442 215 16 7 3815 4024 435484122 435483914 1.880000e-58 237.0
5 TraesCS4D01G204500 chr4B 91.089 101 7 2 401 501 435487104 435487006 7.040000e-28 135.0
6 TraesCS4D01G204500 chr4B 93.750 64 4 0 328 391 525173441 525173378 3.320000e-16 97.1
7 TraesCS4D01G204500 chr4A 93.615 2647 98 23 432 3051 113332721 113330119 0.000000e+00 3886.0
8 TraesCS4D01G204500 chr4A 81.213 511 70 12 1 503 113333110 113332618 4.900000e-104 388.0
9 TraesCS4D01G204500 chr4A 89.706 136 12 1 3228 3361 113329947 113329812 5.370000e-39 172.0
10 TraesCS4D01G204500 chr4A 90.625 64 6 0 328 391 37986102 37986039 7.190000e-13 86.1
11 TraesCS4D01G204500 chr4A 83.824 68 7 4 401 467 140974959 140975023 1.210000e-05 62.1
12 TraesCS4D01G204500 chr3D 78.726 1946 316 61 1152 3042 558784316 558786218 0.000000e+00 1210.0
13 TraesCS4D01G204500 chr3D 89.520 229 24 0 3578 3806 209677498 209677726 1.420000e-74 291.0
14 TraesCS4D01G204500 chr3D 86.957 184 21 2 3371 3551 442497747 442497564 1.900000e-48 204.0
15 TraesCS4D01G204500 chr3B 79.549 1731 271 51 1364 3042 741601370 741603069 0.000000e+00 1158.0
16 TraesCS4D01G204500 chr3B 77.173 1139 185 37 1924 3042 741713569 741714652 9.670000e-166 593.0
17 TraesCS4D01G204500 chr3A 79.526 1646 270 41 1447 3042 695130593 695132221 0.000000e+00 1110.0
18 TraesCS4D01G204500 chr3A 75.352 568 91 24 1929 2494 695224148 695224668 1.130000e-55 228.0
19 TraesCS4D01G204500 chr1A 76.822 1592 270 65 1475 3030 23816619 23818147 0.000000e+00 804.0
20 TraesCS4D01G204500 chr1A 88.412 233 27 0 3578 3810 134525955 134525723 8.550000e-72 281.0
21 TraesCS4D01G204500 chr1A 77.686 121 23 3 1155 1273 23816374 23816492 2.010000e-08 71.3
22 TraesCS4D01G204500 chr1D 78.652 1157 193 40 1535 2664 22625525 22624396 0.000000e+00 719.0
23 TraesCS4D01G204500 chr1D 90.741 54 5 0 493 546 125313915 125313968 5.600000e-09 73.1
24 TraesCS4D01G204500 chr1B 77.440 1250 213 51 1442 2658 38832446 38833659 0.000000e+00 682.0
25 TraesCS4D01G204500 chr1B 89.130 230 25 0 3578 3807 2770486 2770257 1.840000e-73 287.0
26 TraesCS4D01G204500 chr1B 100.000 28 0 0 493 520 332795421 332795394 7.000000e-03 52.8
27 TraesCS4D01G204500 chr5D 94.014 284 8 1 1176 1459 80220268 80220542 4.830000e-114 422.0
28 TraesCS4D01G204500 chr5D 87.356 174 19 2 3371 3541 258648000 258647827 3.190000e-46 196.0
29 TraesCS4D01G204500 chr7A 90.909 231 21 0 3578 3808 383096224 383095994 1.090000e-80 311.0
30 TraesCS4D01G204500 chr7A 83.770 191 27 4 3368 3554 112969368 112969558 1.150000e-40 178.0
31 TraesCS4D01G204500 chr7D 89.565 230 24 0 3577 3806 149980019 149980248 3.950000e-75 292.0
32 TraesCS4D01G204500 chr7D 89.035 228 25 0 3579 3806 312366254 312366027 2.380000e-72 283.0
33 TraesCS4D01G204500 chr2A 89.520 229 21 2 3578 3806 9107177 9106952 1.840000e-73 287.0
34 TraesCS4D01G204500 chr2A 87.709 179 19 2 3371 3546 739854609 739854787 5.290000e-49 206.0
35 TraesCS4D01G204500 chr2A 86.010 193 19 5 3371 3557 715765234 715765044 2.460000e-47 200.0
36 TraesCS4D01G204500 chr6B 88.745 231 26 0 3578 3808 348298968 348298738 2.380000e-72 283.0
37 TraesCS4D01G204500 chr6B 86.792 53 5 2 494 545 664867696 664867645 1.570000e-04 58.4
38 TraesCS4D01G204500 chr7B 88.646 229 26 0 3578 3806 441415766 441415538 3.070000e-71 279.0
39 TraesCS4D01G204500 chr7B 94.444 144 8 0 1371 1514 612858965 612859108 5.260000e-54 222.0
40 TraesCS4D01G204500 chr5B 93.007 143 10 0 1372 1514 621057258 621057116 4.090000e-50 209.0
41 TraesCS4D01G204500 chr5B 89.583 48 5 0 493 540 683478633 683478680 1.210000e-05 62.1
42 TraesCS4D01G204500 chr6A 83.417 199 25 7 3368 3561 36704442 36704637 1.150000e-40 178.0
43 TraesCS4D01G204500 chr6A 83.249 197 25 6 3371 3563 180309158 180309350 1.490000e-39 174.0
44 TraesCS4D01G204500 chrUn 82.915 199 27 6 3366 3560 30689424 30689229 5.370000e-39 172.0
45 TraesCS4D01G204500 chr2B 93.182 44 3 0 497 540 134545906 134545949 9.370000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G204500 chr4D 352117066 352121105 4039 False 7461.00 7461 100.0000 1 4040 1 chr4D.!!$F1 4039
1 TraesCS4D01G204500 chr4B 435483914 435487478 3564 True 1259.25 4266 89.5495 1 4024 4 chr4B.!!$R2 4023
2 TraesCS4D01G204500 chr4A 113329812 113333110 3298 True 1482.00 3886 88.1780 1 3361 3 chr4A.!!$R2 3360
3 TraesCS4D01G204500 chr3D 558784316 558786218 1902 False 1210.00 1210 78.7260 1152 3042 1 chr3D.!!$F2 1890
4 TraesCS4D01G204500 chr3B 741601370 741603069 1699 False 1158.00 1158 79.5490 1364 3042 1 chr3B.!!$F1 1678
5 TraesCS4D01G204500 chr3B 741713569 741714652 1083 False 593.00 593 77.1730 1924 3042 1 chr3B.!!$F2 1118
6 TraesCS4D01G204500 chr3A 695130593 695132221 1628 False 1110.00 1110 79.5260 1447 3042 1 chr3A.!!$F1 1595
7 TraesCS4D01G204500 chr3A 695224148 695224668 520 False 228.00 228 75.3520 1929 2494 1 chr3A.!!$F2 565
8 TraesCS4D01G204500 chr1A 23816374 23818147 1773 False 437.65 804 77.2540 1155 3030 2 chr1A.!!$F1 1875
9 TraesCS4D01G204500 chr1D 22624396 22625525 1129 True 719.00 719 78.6520 1535 2664 1 chr1D.!!$R1 1129
10 TraesCS4D01G204500 chr1B 38832446 38833659 1213 False 682.00 682 77.4400 1442 2658 1 chr1B.!!$F1 1216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 720 0.988063 GCCTCCAAGTTTCTCTCCCT 59.012 55.000 0.00 0.00 0.00 4.20 F
668 722 2.093394 GCCTCCAAGTTTCTCTCCCTAC 60.093 54.545 0.00 0.00 0.00 3.18 F
758 829 2.110578 ACCTACCCTTAATAACGGCGT 58.889 47.619 6.77 6.77 0.00 5.68 F
1728 1898 1.064296 CGCCGAGCTGATAGTCGTT 59.936 57.895 0.00 0.00 34.27 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1889 0.535335 TGTGGAGGCCAACGACTATC 59.465 55.000 5.01 0.0 34.18 2.08 R
1722 1892 1.227853 GTTGTGGAGGCCAACGACT 60.228 57.895 5.01 0.0 34.18 4.18 R
2680 2871 1.237285 GCATTGCCTTCGTGGTGACT 61.237 55.000 0.00 0.0 38.35 3.41 R
3593 3869 0.249120 TGGCACGGATTACAGTGAGG 59.751 55.000 0.00 0.0 42.97 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 74 1.065551 GCCAAGGGCGAATGTTATGAC 59.934 52.381 0.00 0.00 39.62 3.06
165 177 2.086610 ACCATGCAAGTTTCCTTGGT 57.913 45.000 0.00 0.00 46.72 3.67
173 185 4.890581 TGCAAGTTTCCTTGGTTAAGCTAA 59.109 37.500 6.19 0.00 46.72 3.09
237 249 3.386402 CCTCTCCAAGGGATCTTGTAGAC 59.614 52.174 5.56 0.00 46.65 2.59
256 276 5.234466 AGACAAGCTTTCATAGGTGAAGT 57.766 39.130 0.00 0.00 44.62 3.01
257 277 6.360370 AGACAAGCTTTCATAGGTGAAGTA 57.640 37.500 0.00 0.00 44.62 2.24
258 278 6.769512 AGACAAGCTTTCATAGGTGAAGTAA 58.230 36.000 0.00 0.00 44.62 2.24
259 279 6.651225 AGACAAGCTTTCATAGGTGAAGTAAC 59.349 38.462 0.00 0.00 44.62 2.50
260 280 6.534634 ACAAGCTTTCATAGGTGAAGTAACT 58.465 36.000 0.00 0.00 44.62 2.24
261 281 6.998673 ACAAGCTTTCATAGGTGAAGTAACTT 59.001 34.615 0.00 0.00 44.62 2.66
262 282 7.041098 ACAAGCTTTCATAGGTGAAGTAACTTG 60.041 37.037 0.00 15.20 44.62 3.16
263 283 5.940470 AGCTTTCATAGGTGAAGTAACTTGG 59.060 40.000 0.00 0.00 44.62 3.61
264 284 5.705905 GCTTTCATAGGTGAAGTAACTTGGT 59.294 40.000 0.00 0.00 44.62 3.67
265 285 6.348540 GCTTTCATAGGTGAAGTAACTTGGTG 60.349 42.308 0.00 0.00 44.62 4.17
266 286 6.428083 TTCATAGGTGAAGTAACTTGGTGA 57.572 37.500 0.00 0.00 39.36 4.02
267 287 6.620877 TCATAGGTGAAGTAACTTGGTGAT 57.379 37.500 0.00 0.00 0.00 3.06
268 288 7.727578 TCATAGGTGAAGTAACTTGGTGATA 57.272 36.000 0.00 0.00 0.00 2.15
273 293 8.706322 AGGTGAAGTAACTTGGTGATAAAAAT 57.294 30.769 0.00 0.00 0.00 1.82
319 339 3.951563 TGCTTATGGGCTAAGGAACAT 57.048 42.857 0.00 0.00 35.13 2.71
324 344 6.116126 GCTTATGGGCTAAGGAACATATAGG 58.884 44.000 0.00 0.00 37.82 2.57
335 355 9.191479 CTAAGGAACATATAGGTATACTCCCTG 57.809 40.741 2.25 0.00 33.35 4.45
337 357 5.163540 GGAACATATAGGTATACTCCCTGCG 60.164 48.000 2.25 0.00 33.35 5.18
352 374 4.653868 TCCCTGCGTTTTTATTTACTCCA 58.346 39.130 0.00 0.00 0.00 3.86
359 381 9.567848 CTGCGTTTTTATTTACTCCACATATTT 57.432 29.630 0.00 0.00 0.00 1.40
450 472 9.672086 TTTATCCAAACAATCTAAACTTTCACG 57.328 29.630 0.00 0.00 0.00 4.35
512 565 8.713737 ACAAAAATATACTACTTCCTCCGTTC 57.286 34.615 0.00 0.00 0.00 3.95
513 566 7.767659 ACAAAAATATACTACTTCCTCCGTTCC 59.232 37.037 0.00 0.00 0.00 3.62
514 567 7.427989 AAAATATACTACTTCCTCCGTTCCA 57.572 36.000 0.00 0.00 0.00 3.53
515 568 7.427989 AAATATACTACTTCCTCCGTTCCAA 57.572 36.000 0.00 0.00 0.00 3.53
516 569 7.427989 AATATACTACTTCCTCCGTTCCAAA 57.572 36.000 0.00 0.00 0.00 3.28
517 570 5.750352 ATACTACTTCCTCCGTTCCAAAA 57.250 39.130 0.00 0.00 0.00 2.44
518 571 4.635699 ACTACTTCCTCCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
519 572 5.750352 ACTACTTCCTCCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
520 573 6.117975 ACTACTTCCTCCGTTCCAAAATAA 57.882 37.500 0.00 0.00 0.00 1.40
521 574 6.171213 ACTACTTCCTCCGTTCCAAAATAAG 58.829 40.000 0.00 0.00 0.00 1.73
522 575 4.981812 ACTTCCTCCGTTCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
523 576 4.760204 ACTTCCTCCGTTCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
524 577 3.681593 TCCTCCGTTCCAAAATAAGTGG 58.318 45.455 0.00 0.00 37.51 4.00
525 578 2.163613 CCTCCGTTCCAAAATAAGTGGC 59.836 50.000 0.00 0.00 35.99 5.01
526 579 3.081804 CTCCGTTCCAAAATAAGTGGCT 58.918 45.455 0.00 0.00 35.99 4.75
527 580 3.492337 TCCGTTCCAAAATAAGTGGCTT 58.508 40.909 0.00 0.00 35.99 4.35
528 581 4.653868 TCCGTTCCAAAATAAGTGGCTTA 58.346 39.130 0.00 0.00 35.99 3.09
529 582 5.071370 TCCGTTCCAAAATAAGTGGCTTAA 58.929 37.500 0.00 0.00 35.99 1.85
530 583 5.712917 TCCGTTCCAAAATAAGTGGCTTAAT 59.287 36.000 0.00 0.00 35.99 1.40
531 584 6.209788 TCCGTTCCAAAATAAGTGGCTTAATT 59.790 34.615 0.00 0.00 35.99 1.40
532 585 6.871492 CCGTTCCAAAATAAGTGGCTTAATTT 59.129 34.615 0.00 0.00 35.99 1.82
533 586 7.386573 CCGTTCCAAAATAAGTGGCTTAATTTT 59.613 33.333 0.72 0.00 35.99 1.82
534 587 8.220434 CGTTCCAAAATAAGTGGCTTAATTTTG 58.780 33.333 17.47 17.47 36.18 2.44
535 588 9.051679 GTTCCAAAATAAGTGGCTTAATTTTGT 57.948 29.630 19.73 0.48 35.60 2.83
537 590 9.699703 TCCAAAATAAGTGGCTTAATTTTGTAC 57.300 29.630 19.73 0.00 35.60 2.90
538 591 9.705290 CCAAAATAAGTGGCTTAATTTTGTACT 57.295 29.630 19.73 0.00 35.60 2.73
666 720 0.988063 GCCTCCAAGTTTCTCTCCCT 59.012 55.000 0.00 0.00 0.00 4.20
667 721 2.188817 GCCTCCAAGTTTCTCTCCCTA 58.811 52.381 0.00 0.00 0.00 3.53
668 722 2.093394 GCCTCCAAGTTTCTCTCCCTAC 60.093 54.545 0.00 0.00 0.00 3.18
669 723 3.173965 CCTCCAAGTTTCTCTCCCTACA 58.826 50.000 0.00 0.00 0.00 2.74
670 724 3.777522 CCTCCAAGTTTCTCTCCCTACAT 59.222 47.826 0.00 0.00 0.00 2.29
671 725 4.226168 CCTCCAAGTTTCTCTCCCTACATT 59.774 45.833 0.00 0.00 0.00 2.71
672 726 5.280727 CCTCCAAGTTTCTCTCCCTACATTT 60.281 44.000 0.00 0.00 0.00 2.32
687 741 5.799936 CCCTACATTTTACATTTTGTGCTCG 59.200 40.000 0.00 0.00 0.00 5.03
719 790 8.579850 TCTACAAATATTTGAAGGCAAGACAT 57.420 30.769 30.18 9.38 40.55 3.06
755 826 4.445453 GTCCAACCTACCCTTAATAACGG 58.555 47.826 0.00 0.00 0.00 4.44
758 829 2.110578 ACCTACCCTTAATAACGGCGT 58.889 47.619 6.77 6.77 0.00 5.68
964 1045 4.766632 GAAAGCCCCCAGCCCAGG 62.767 72.222 0.00 0.00 45.47 4.45
1053 1134 4.162690 AAGCCAGATCCCGACGCC 62.163 66.667 0.00 0.00 0.00 5.68
1113 1194 2.112297 GTGTCCACCAAGCCCGAA 59.888 61.111 0.00 0.00 0.00 4.30
1179 1260 4.007644 CCCGAGCTCTGTGCCACA 62.008 66.667 12.85 0.00 44.23 4.17
1307 1391 4.247380 CCAGCCATCGCCTCCCTC 62.247 72.222 0.00 0.00 34.57 4.30
1308 1392 4.598894 CAGCCATCGCCTCCCTCG 62.599 72.222 0.00 0.00 34.57 4.63
1312 1396 4.899239 CATCGCCTCCCTCGCCAC 62.899 72.222 0.00 0.00 0.00 5.01
1722 1892 2.903350 TACCGCGCCGAGCTGATA 60.903 61.111 0.00 0.00 45.59 2.15
1728 1898 1.064296 CGCCGAGCTGATAGTCGTT 59.936 57.895 0.00 0.00 34.27 3.85
1782 1952 3.327404 ATCCCCGCCAACCTCGTT 61.327 61.111 0.00 0.00 0.00 3.85
2109 2279 1.599542 GTCTGCAAGTTCAAGCTCGTT 59.400 47.619 0.00 0.00 33.76 3.85
2277 2450 3.934579 TCAACAATGTGGATCGAGACATG 59.065 43.478 7.94 0.00 33.03 3.21
2664 2855 1.068741 GAGTTCAGTGGAGACGTGGTT 59.931 52.381 0.00 0.00 0.00 3.67
3051 3263 2.695359 GGTCCGTGATCTGCAAAGTTA 58.305 47.619 0.00 0.00 0.00 2.24
3079 3291 4.619973 CGAGAGGGATCAGAGATGAAAAG 58.380 47.826 0.00 0.00 0.00 2.27
3083 3295 5.252630 AGAGGGATCAGAGATGAAAAGGTTT 59.747 40.000 0.00 0.00 0.00 3.27
3084 3296 5.896963 AGGGATCAGAGATGAAAAGGTTTT 58.103 37.500 0.00 0.00 0.00 2.43
3129 3342 1.371558 GGCTTCACGGGTCTCTGTT 59.628 57.895 0.00 0.00 0.00 3.16
3147 3360 2.436173 TGTTGTTGGTGGGGAATTTTCC 59.564 45.455 0.41 0.41 46.82 3.13
3154 3367 3.389656 TGGTGGGGAATTTTCCTTTTGTC 59.610 43.478 9.13 0.00 46.72 3.18
3225 3443 5.047802 GTGCTGGTGTAGTTACCTTAGTACA 60.048 44.000 0.00 0.00 41.43 2.90
3226 3444 5.184479 TGCTGGTGTAGTTACCTTAGTACAG 59.816 44.000 0.00 0.00 41.43 2.74
3245 3519 1.588667 GTGGCTGGCACAAAACACG 60.589 57.895 27.01 0.00 38.70 4.49
3289 3563 4.235360 ACTCTATCGCGTATTTATGTGGC 58.765 43.478 5.77 0.00 0.00 5.01
3363 3639 3.641906 TCCCTCCGATCCAAATCTAAGTC 59.358 47.826 0.00 0.00 0.00 3.01
3365 3641 3.318275 CCTCCGATCCAAATCTAAGTCGA 59.682 47.826 0.00 0.00 0.00 4.20
3366 3642 4.291783 CTCCGATCCAAATCTAAGTCGAC 58.708 47.826 7.70 7.70 0.00 4.20
3367 3643 3.952323 TCCGATCCAAATCTAAGTCGACT 59.048 43.478 13.58 13.58 0.00 4.18
3368 3644 5.128205 TCCGATCCAAATCTAAGTCGACTA 58.872 41.667 20.39 3.26 0.00 2.59
3369 3645 5.238868 TCCGATCCAAATCTAAGTCGACTAG 59.761 44.000 20.39 15.73 0.00 2.57
3370 3646 4.912766 CGATCCAAATCTAAGTCGACTAGC 59.087 45.833 20.39 1.07 0.00 3.42
3371 3647 5.505819 CGATCCAAATCTAAGTCGACTAGCA 60.506 44.000 20.39 5.57 0.00 3.49
3372 3648 5.250235 TCCAAATCTAAGTCGACTAGCAG 57.750 43.478 20.39 15.89 0.00 4.24
3373 3649 4.705507 TCCAAATCTAAGTCGACTAGCAGT 59.294 41.667 20.39 5.08 0.00 4.40
3374 3650 5.185249 TCCAAATCTAAGTCGACTAGCAGTT 59.815 40.000 20.39 7.90 0.00 3.16
3375 3651 5.869888 CCAAATCTAAGTCGACTAGCAGTTT 59.130 40.000 20.39 13.78 0.00 2.66
3376 3652 7.033791 CCAAATCTAAGTCGACTAGCAGTTTA 58.966 38.462 20.39 4.56 0.00 2.01
3377 3653 7.221067 CCAAATCTAAGTCGACTAGCAGTTTAG 59.779 40.741 20.39 14.46 0.00 1.85
3378 3654 5.232610 TCTAAGTCGACTAGCAGTTTAGC 57.767 43.478 20.39 0.00 0.00 3.09
3380 3656 6.111382 TCTAAGTCGACTAGCAGTTTAGCTA 58.889 40.000 20.39 1.71 44.50 3.32
3381 3657 5.640189 AAGTCGACTAGCAGTTTAGCTAA 57.360 39.130 20.39 0.86 45.69 3.09
3382 3658 5.640189 AGTCGACTAGCAGTTTAGCTAAA 57.360 39.130 18.46 14.96 45.69 1.85
3383 3659 5.642686 AGTCGACTAGCAGTTTAGCTAAAG 58.357 41.667 18.46 9.83 45.69 1.85
3384 3660 4.265792 GTCGACTAGCAGTTTAGCTAAAGC 59.734 45.833 19.16 18.57 45.69 3.51
3385 3661 4.082408 TCGACTAGCAGTTTAGCTAAAGCA 60.082 41.667 24.30 13.74 45.69 3.91
3386 3662 4.031878 CGACTAGCAGTTTAGCTAAAGCAC 59.968 45.833 24.30 13.78 45.69 4.40
3387 3663 4.894784 ACTAGCAGTTTAGCTAAAGCACA 58.105 39.130 24.30 14.60 45.69 4.57
3388 3664 5.491982 ACTAGCAGTTTAGCTAAAGCACAT 58.508 37.500 24.30 12.05 45.69 3.21
3389 3665 4.954092 AGCAGTTTAGCTAAAGCACATC 57.046 40.909 24.30 11.90 44.50 3.06
3390 3666 4.583871 AGCAGTTTAGCTAAAGCACATCT 58.416 39.130 24.30 13.59 44.50 2.90
3391 3667 5.734720 AGCAGTTTAGCTAAAGCACATCTA 58.265 37.500 24.30 0.00 44.50 1.98
3392 3668 5.814705 AGCAGTTTAGCTAAAGCACATCTAG 59.185 40.000 24.30 12.03 44.50 2.43
3393 3669 5.812642 GCAGTTTAGCTAAAGCACATCTAGA 59.187 40.000 19.16 0.00 45.16 2.43
3394 3670 6.481644 GCAGTTTAGCTAAAGCACATCTAGAT 59.518 38.462 19.16 0.00 45.16 1.98
3395 3671 7.518052 GCAGTTTAGCTAAAGCACATCTAGATG 60.518 40.741 27.63 27.63 45.16 2.90
3410 3686 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
3411 3687 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
3412 3688 6.772605 TCTAGATGTGCCATAAGTATTGCAT 58.227 36.000 0.92 0.00 36.83 3.96
3413 3689 7.906327 TCTAGATGTGCCATAAGTATTGCATA 58.094 34.615 0.92 0.00 36.83 3.14
3414 3690 8.542926 TCTAGATGTGCCATAAGTATTGCATAT 58.457 33.333 6.39 6.39 38.33 1.78
3415 3691 7.621428 AGATGTGCCATAAGTATTGCATATC 57.379 36.000 18.53 18.53 45.14 1.63
3416 3692 7.621428 GATGTGCCATAAGTATTGCATATCT 57.379 36.000 18.74 0.00 43.34 1.98
3417 3693 8.722480 GATGTGCCATAAGTATTGCATATCTA 57.278 34.615 18.74 1.53 43.34 1.98
3418 3694 9.166173 GATGTGCCATAAGTATTGCATATCTAA 57.834 33.333 18.74 0.00 43.34 2.10
3419 3695 8.552083 TGTGCCATAAGTATTGCATATCTAAG 57.448 34.615 0.92 0.00 36.83 2.18
3420 3696 8.156820 TGTGCCATAAGTATTGCATATCTAAGT 58.843 33.333 0.92 0.00 36.83 2.24
3421 3697 8.660373 GTGCCATAAGTATTGCATATCTAAGTC 58.340 37.037 0.92 0.00 36.83 3.01
3422 3698 8.597167 TGCCATAAGTATTGCATATCTAAGTCT 58.403 33.333 0.00 0.00 30.49 3.24
3423 3699 9.442047 GCCATAAGTATTGCATATCTAAGTCTT 57.558 33.333 0.00 0.00 0.00 3.01
3443 3719 9.667107 AAGTCTTAAATCATTGATCTTACGGAA 57.333 29.630 0.00 0.00 0.00 4.30
3444 3720 9.319143 AGTCTTAAATCATTGATCTTACGGAAG 57.681 33.333 0.00 0.00 0.00 3.46
3445 3721 9.314321 GTCTTAAATCATTGATCTTACGGAAGA 57.686 33.333 13.63 13.63 45.75 2.87
3462 3738 7.730364 ACGGAAGATTCATGTGTATATTTCC 57.270 36.000 0.00 2.82 0.00 3.13
3463 3739 6.710744 ACGGAAGATTCATGTGTATATTTCCC 59.289 38.462 0.00 0.00 0.00 3.97
3464 3740 6.936900 CGGAAGATTCATGTGTATATTTCCCT 59.063 38.462 0.00 0.00 0.00 4.20
3465 3741 7.118390 CGGAAGATTCATGTGTATATTTCCCTC 59.882 40.741 0.00 0.00 0.00 4.30
3466 3742 7.391833 GGAAGATTCATGTGTATATTTCCCTCC 59.608 40.741 0.00 0.00 0.00 4.30
3467 3743 7.639062 AGATTCATGTGTATATTTCCCTCCT 57.361 36.000 0.00 0.00 0.00 3.69
3468 3744 8.050316 AGATTCATGTGTATATTTCCCTCCTT 57.950 34.615 0.00 0.00 0.00 3.36
3469 3745 8.506083 AGATTCATGTGTATATTTCCCTCCTTT 58.494 33.333 0.00 0.00 0.00 3.11
3470 3746 9.136323 GATTCATGTGTATATTTCCCTCCTTTT 57.864 33.333 0.00 0.00 0.00 2.27
3471 3747 8.893563 TTCATGTGTATATTTCCCTCCTTTTT 57.106 30.769 0.00 0.00 0.00 1.94
3472 3748 8.519799 TCATGTGTATATTTCCCTCCTTTTTC 57.480 34.615 0.00 0.00 0.00 2.29
3473 3749 8.336235 TCATGTGTATATTTCCCTCCTTTTTCT 58.664 33.333 0.00 0.00 0.00 2.52
3474 3750 8.971073 CATGTGTATATTTCCCTCCTTTTTCTT 58.029 33.333 0.00 0.00 0.00 2.52
3475 3751 8.950007 TGTGTATATTTCCCTCCTTTTTCTTT 57.050 30.769 0.00 0.00 0.00 2.52
3476 3752 9.374711 TGTGTATATTTCCCTCCTTTTTCTTTT 57.625 29.630 0.00 0.00 0.00 2.27
3482 3758 8.783660 ATTTCCCTCCTTTTTCTTTTACTTCT 57.216 30.769 0.00 0.00 0.00 2.85
3483 3759 8.603898 TTTCCCTCCTTTTTCTTTTACTTCTT 57.396 30.769 0.00 0.00 0.00 2.52
3484 3760 9.703677 TTTCCCTCCTTTTTCTTTTACTTCTTA 57.296 29.630 0.00 0.00 0.00 2.10
3485 3761 8.919777 TCCCTCCTTTTTCTTTTACTTCTTAG 57.080 34.615 0.00 0.00 0.00 2.18
3486 3762 7.942894 TCCCTCCTTTTTCTTTTACTTCTTAGG 59.057 37.037 0.00 0.00 0.00 2.69
3487 3763 7.309255 CCCTCCTTTTTCTTTTACTTCTTAGGC 60.309 40.741 0.00 0.00 0.00 3.93
3488 3764 7.448777 CCTCCTTTTTCTTTTACTTCTTAGGCT 59.551 37.037 0.00 0.00 0.00 4.58
3489 3765 8.762481 TCCTTTTTCTTTTACTTCTTAGGCTT 57.238 30.769 0.00 0.00 0.00 4.35
3490 3766 8.630037 TCCTTTTTCTTTTACTTCTTAGGCTTG 58.370 33.333 0.00 0.00 0.00 4.01
3491 3767 8.630037 CCTTTTTCTTTTACTTCTTAGGCTTGA 58.370 33.333 0.00 0.00 0.00 3.02
3494 3770 9.965824 TTTTCTTTTACTTCTTAGGCTTGATTG 57.034 29.630 0.00 0.00 0.00 2.67
3495 3771 8.918202 TTCTTTTACTTCTTAGGCTTGATTGA 57.082 30.769 0.00 0.00 0.00 2.57
3496 3772 8.553459 TCTTTTACTTCTTAGGCTTGATTGAG 57.447 34.615 0.00 0.00 0.00 3.02
3497 3773 7.607991 TCTTTTACTTCTTAGGCTTGATTGAGG 59.392 37.037 0.00 0.00 0.00 3.86
3498 3774 4.227864 ACTTCTTAGGCTTGATTGAGGG 57.772 45.455 0.00 0.00 0.00 4.30
3499 3775 3.846588 ACTTCTTAGGCTTGATTGAGGGA 59.153 43.478 0.00 0.00 0.00 4.20
3500 3776 3.914426 TCTTAGGCTTGATTGAGGGAC 57.086 47.619 0.00 0.00 0.00 4.46
3502 3778 3.198635 TCTTAGGCTTGATTGAGGGACTG 59.801 47.826 0.00 0.00 41.55 3.51
3503 3779 1.661463 AGGCTTGATTGAGGGACTGA 58.339 50.000 0.00 0.00 41.55 3.41
3504 3780 1.558756 AGGCTTGATTGAGGGACTGAG 59.441 52.381 0.00 0.00 41.55 3.35
3505 3781 1.556911 GGCTTGATTGAGGGACTGAGA 59.443 52.381 0.00 0.00 41.55 3.27
3506 3782 2.172293 GGCTTGATTGAGGGACTGAGAT 59.828 50.000 0.00 0.00 41.55 2.75
3507 3783 3.389329 GGCTTGATTGAGGGACTGAGATA 59.611 47.826 0.00 0.00 41.55 1.98
3508 3784 4.041444 GGCTTGATTGAGGGACTGAGATAT 59.959 45.833 0.00 0.00 41.55 1.63
3509 3785 4.996122 GCTTGATTGAGGGACTGAGATATG 59.004 45.833 0.00 0.00 41.55 1.78
3510 3786 4.613925 TGATTGAGGGACTGAGATATGC 57.386 45.455 0.00 0.00 41.55 3.14
3511 3787 3.969312 TGATTGAGGGACTGAGATATGCA 59.031 43.478 0.00 0.00 41.55 3.96
3512 3788 4.409901 TGATTGAGGGACTGAGATATGCAA 59.590 41.667 0.00 0.00 41.55 4.08
3513 3789 5.072736 TGATTGAGGGACTGAGATATGCAAT 59.927 40.000 0.00 0.00 41.55 3.56
3514 3790 6.270695 TGATTGAGGGACTGAGATATGCAATA 59.729 38.462 0.00 0.00 41.55 1.90
3515 3791 6.499106 TTGAGGGACTGAGATATGCAATAA 57.501 37.500 0.00 0.00 41.55 1.40
3516 3792 6.692849 TGAGGGACTGAGATATGCAATAAT 57.307 37.500 0.00 0.00 41.55 1.28
3517 3793 7.083062 TGAGGGACTGAGATATGCAATAATT 57.917 36.000 0.00 0.00 41.55 1.40
3518 3794 8.206126 TGAGGGACTGAGATATGCAATAATTA 57.794 34.615 0.00 0.00 41.55 1.40
3519 3795 8.316946 TGAGGGACTGAGATATGCAATAATTAG 58.683 37.037 0.00 0.00 41.55 1.73
3520 3796 7.628234 AGGGACTGAGATATGCAATAATTAGG 58.372 38.462 0.00 0.00 37.18 2.69
3521 3797 6.825721 GGGACTGAGATATGCAATAATTAGGG 59.174 42.308 0.00 0.00 29.06 3.53
3522 3798 6.317391 GGACTGAGATATGCAATAATTAGGGC 59.683 42.308 0.00 4.62 29.06 5.19
3523 3799 6.782986 ACTGAGATATGCAATAATTAGGGCA 58.217 36.000 14.07 14.07 41.00 5.36
3524 3800 6.656693 ACTGAGATATGCAATAATTAGGGCAC 59.343 38.462 14.01 4.70 39.34 5.01
3525 3801 6.541907 TGAGATATGCAATAATTAGGGCACA 58.458 36.000 14.01 5.49 39.34 4.57
3526 3802 7.177184 TGAGATATGCAATAATTAGGGCACAT 58.823 34.615 14.01 9.55 39.34 3.21
3527 3803 7.337689 TGAGATATGCAATAATTAGGGCACATC 59.662 37.037 17.92 17.92 39.73 3.06
3528 3804 7.408543 AGATATGCAATAATTAGGGCACATCT 58.591 34.615 20.63 20.63 43.48 2.90
3529 3805 8.551440 AGATATGCAATAATTAGGGCACATCTA 58.449 33.333 23.08 11.35 45.62 1.98
3530 3806 9.177608 GATATGCAATAATTAGGGCACATCTAA 57.822 33.333 18.16 0.00 37.25 2.10
3531 3807 7.838079 ATGCAATAATTAGGGCACATCTAAA 57.162 32.000 14.01 0.00 39.34 1.85
3532 3808 7.838079 TGCAATAATTAGGGCACATCTAAAT 57.162 32.000 9.15 0.00 31.49 1.40
3533 3809 7.660112 TGCAATAATTAGGGCACATCTAAATG 58.340 34.615 9.15 0.00 38.93 2.32
3546 3822 6.909550 ACATCTAAATGTGCCCTAAACAAA 57.090 33.333 0.00 0.00 44.51 2.83
3547 3823 6.687604 ACATCTAAATGTGCCCTAAACAAAC 58.312 36.000 0.00 0.00 44.51 2.93
3548 3824 5.715434 TCTAAATGTGCCCTAAACAAACC 57.285 39.130 0.00 0.00 0.00 3.27
3549 3825 3.762407 AAATGTGCCCTAAACAAACCC 57.238 42.857 0.00 0.00 0.00 4.11
3550 3826 2.390225 ATGTGCCCTAAACAAACCCA 57.610 45.000 0.00 0.00 0.00 4.51
3551 3827 1.404843 TGTGCCCTAAACAAACCCAC 58.595 50.000 0.00 0.00 0.00 4.61
3552 3828 1.063567 TGTGCCCTAAACAAACCCACT 60.064 47.619 0.00 0.00 0.00 4.00
3553 3829 2.036387 GTGCCCTAAACAAACCCACTT 58.964 47.619 0.00 0.00 0.00 3.16
3554 3830 3.224269 GTGCCCTAAACAAACCCACTTA 58.776 45.455 0.00 0.00 0.00 2.24
3557 3833 5.011586 TGCCCTAAACAAACCCACTTATAC 58.988 41.667 0.00 0.00 0.00 1.47
3566 3842 8.756486 AACAAACCCACTTATACTAAAACTGT 57.244 30.769 0.00 0.00 0.00 3.55
3571 3847 7.511268 ACCCACTTATACTAAAACTGTGTCAA 58.489 34.615 0.00 0.00 0.00 3.18
3581 3857 8.691661 ACTAAAACTGTGTCAATTAATGTCCT 57.308 30.769 0.00 0.00 0.00 3.85
3582 3858 8.567948 ACTAAAACTGTGTCAATTAATGTCCTG 58.432 33.333 0.00 0.00 0.00 3.86
3583 3859 5.376854 AACTGTGTCAATTAATGTCCTGC 57.623 39.130 0.00 0.00 0.00 4.85
3584 3860 4.655963 ACTGTGTCAATTAATGTCCTGCT 58.344 39.130 0.00 0.00 0.00 4.24
3585 3861 5.072741 ACTGTGTCAATTAATGTCCTGCTT 58.927 37.500 0.00 0.00 0.00 3.91
3586 3862 5.536161 ACTGTGTCAATTAATGTCCTGCTTT 59.464 36.000 0.00 0.00 0.00 3.51
3587 3863 6.714810 ACTGTGTCAATTAATGTCCTGCTTTA 59.285 34.615 0.00 0.00 0.00 1.85
3589 3865 8.121305 TGTGTCAATTAATGTCCTGCTTTATT 57.879 30.769 0.00 0.00 0.00 1.40
3593 3869 9.937175 GTCAATTAATGTCCTGCTTTATTAGTC 57.063 33.333 0.00 0.00 0.00 2.59
3594 3870 9.120538 TCAATTAATGTCCTGCTTTATTAGTCC 57.879 33.333 0.00 0.00 0.00 3.85
3596 3872 8.910351 ATTAATGTCCTGCTTTATTAGTCCTC 57.090 34.615 0.00 0.00 0.00 3.71
3598 3874 5.086104 TGTCCTGCTTTATTAGTCCTCAC 57.914 43.478 0.00 0.00 0.00 3.51
3600 3876 5.112686 GTCCTGCTTTATTAGTCCTCACTG 58.887 45.833 0.00 0.00 33.62 3.66
3601 3877 4.777896 TCCTGCTTTATTAGTCCTCACTGT 59.222 41.667 0.00 0.00 33.62 3.55
3603 3879 6.439375 TCCTGCTTTATTAGTCCTCACTGTAA 59.561 38.462 0.00 0.00 33.62 2.41
3604 3880 7.125811 TCCTGCTTTATTAGTCCTCACTGTAAT 59.874 37.037 0.00 0.00 33.62 1.89
3606 3882 7.272978 TGCTTTATTAGTCCTCACTGTAATCC 58.727 38.462 0.00 0.00 33.62 3.01
3607 3883 6.421202 GCTTTATTAGTCCTCACTGTAATCCG 59.579 42.308 0.00 0.00 33.62 4.18
3608 3884 7.414222 TTTATTAGTCCTCACTGTAATCCGT 57.586 36.000 0.00 0.00 33.62 4.69
3609 3885 4.713824 TTAGTCCTCACTGTAATCCGTG 57.286 45.455 0.00 0.00 33.62 4.94
3610 3886 1.204941 AGTCCTCACTGTAATCCGTGC 59.795 52.381 0.00 0.00 0.00 5.34
3613 3889 1.338674 CCTCACTGTAATCCGTGCCAA 60.339 52.381 0.00 0.00 0.00 4.52
3614 3890 2.422597 CTCACTGTAATCCGTGCCAAA 58.577 47.619 0.00 0.00 0.00 3.28
3615 3891 3.009723 CTCACTGTAATCCGTGCCAAAT 58.990 45.455 0.00 0.00 0.00 2.32
3616 3892 3.417101 TCACTGTAATCCGTGCCAAATT 58.583 40.909 0.00 0.00 0.00 1.82
3618 3894 4.279671 TCACTGTAATCCGTGCCAAATTTT 59.720 37.500 0.00 0.00 0.00 1.82
3620 3896 4.279671 ACTGTAATCCGTGCCAAATTTTGA 59.720 37.500 10.72 0.00 0.00 2.69
3622 3898 5.406649 TGTAATCCGTGCCAAATTTTGATC 58.593 37.500 10.72 3.09 0.00 2.92
3623 3899 4.533919 AATCCGTGCCAAATTTTGATCA 57.466 36.364 10.72 5.51 0.00 2.92
3624 3900 4.741321 ATCCGTGCCAAATTTTGATCAT 57.259 36.364 10.72 0.00 0.00 2.45
3625 3901 5.850557 ATCCGTGCCAAATTTTGATCATA 57.149 34.783 10.72 0.00 0.00 2.15
3626 3902 5.651387 TCCGTGCCAAATTTTGATCATAA 57.349 34.783 10.72 0.00 0.00 1.90
3627 3903 6.030548 TCCGTGCCAAATTTTGATCATAAA 57.969 33.333 10.72 4.46 0.00 1.40
3628 3904 6.638610 TCCGTGCCAAATTTTGATCATAAAT 58.361 32.000 10.72 6.40 0.00 1.40
3629 3905 7.102346 TCCGTGCCAAATTTTGATCATAAATT 58.898 30.769 10.72 16.33 36.91 1.82
3630 3906 7.605691 TCCGTGCCAAATTTTGATCATAAATTT 59.394 29.630 22.18 22.18 42.72 1.82
3631 3907 8.877779 CCGTGCCAAATTTTGATCATAAATTTA 58.122 29.630 24.66 15.57 41.03 1.40
3660 3936 6.572167 TGAAATGTTCATGCATGTCACTAA 57.428 33.333 25.43 9.97 37.97 2.24
3661 3937 6.979465 TGAAATGTTCATGCATGTCACTAAA 58.021 32.000 25.43 9.24 37.97 1.85
3662 3938 7.432059 TGAAATGTTCATGCATGTCACTAAAA 58.568 30.769 25.43 8.38 37.97 1.52
3663 3939 7.924947 TGAAATGTTCATGCATGTCACTAAAAA 59.075 29.630 25.43 7.67 37.97 1.94
3664 3940 8.836268 AAATGTTCATGCATGTCACTAAAAAT 57.164 26.923 25.43 9.63 0.00 1.82
3665 3941 8.470040 AATGTTCATGCATGTCACTAAAAATC 57.530 30.769 25.43 3.83 0.00 2.17
3666 3942 6.979465 TGTTCATGCATGTCACTAAAAATCA 58.021 32.000 25.43 6.29 0.00 2.57
3667 3943 7.604549 TGTTCATGCATGTCACTAAAAATCAT 58.395 30.769 25.43 0.00 0.00 2.45
3668 3944 8.738106 TGTTCATGCATGTCACTAAAAATCATA 58.262 29.630 25.43 0.00 0.00 2.15
3669 3945 9.740239 GTTCATGCATGTCACTAAAAATCATAT 57.260 29.630 25.43 0.00 0.00 1.78
3670 3946 9.955208 TTCATGCATGTCACTAAAAATCATATC 57.045 29.630 25.43 0.00 0.00 1.63
3671 3947 9.122779 TCATGCATGTCACTAAAAATCATATCA 57.877 29.630 25.43 0.00 0.00 2.15
3672 3948 9.908152 CATGCATGTCACTAAAAATCATATCAT 57.092 29.630 18.91 0.00 0.00 2.45
3674 3950 9.738832 TGCATGTCACTAAAAATCATATCATTG 57.261 29.630 0.00 0.00 0.00 2.82
3675 3951 9.955208 GCATGTCACTAAAAATCATATCATTGA 57.045 29.630 0.00 0.00 0.00 2.57
3702 3978 8.874745 AACTATGTTCAAATACGAATTCAACG 57.125 30.769 6.22 0.00 0.00 4.10
3703 3979 8.246908 ACTATGTTCAAATACGAATTCAACGA 57.753 30.769 6.22 0.00 34.70 3.85
3704 3980 8.879759 ACTATGTTCAAATACGAATTCAACGAT 58.120 29.630 6.22 1.10 34.70 3.73
3723 3999 9.449550 TCAACGATATAATTTTCATTGACATGC 57.550 29.630 0.00 0.00 0.00 4.06
3724 4000 9.235537 CAACGATATAATTTTCATTGACATGCA 57.764 29.630 0.00 0.00 0.00 3.96
3725 4001 8.786937 ACGATATAATTTTCATTGACATGCAC 57.213 30.769 0.00 0.00 0.00 4.57
3726 4002 8.623903 ACGATATAATTTTCATTGACATGCACT 58.376 29.630 0.00 0.00 0.00 4.40
3732 4008 8.836268 AATTTTCATTGACATGCACTAATGTT 57.164 26.923 11.44 0.79 40.87 2.71
3733 4009 8.836268 ATTTTCATTGACATGCACTAATGTTT 57.164 26.923 11.44 0.00 40.87 2.83
3734 4010 8.659925 TTTTCATTGACATGCACTAATGTTTT 57.340 26.923 11.44 0.00 40.87 2.43
3735 4011 7.640616 TTCATTGACATGCACTAATGTTTTG 57.359 32.000 11.44 3.30 40.87 2.44
3736 4012 6.747125 TCATTGACATGCACTAATGTTTTGT 58.253 32.000 11.44 0.00 40.87 2.83
3737 4013 6.862608 TCATTGACATGCACTAATGTTTTGTC 59.137 34.615 4.70 4.70 40.87 3.18
3738 4014 5.764487 TGACATGCACTAATGTTTTGTCA 57.236 34.783 9.32 9.32 40.87 3.58
3739 4015 5.761003 TGACATGCACTAATGTTTTGTCAG 58.239 37.500 9.32 0.00 40.87 3.51
3740 4016 5.299028 TGACATGCACTAATGTTTTGTCAGT 59.701 36.000 9.32 0.00 40.87 3.41
3741 4017 6.147864 ACATGCACTAATGTTTTGTCAGTT 57.852 33.333 0.00 0.00 37.50 3.16
3742 4018 7.012799 TGACATGCACTAATGTTTTGTCAGTTA 59.987 33.333 9.32 0.00 40.87 2.24
3743 4019 7.711846 ACATGCACTAATGTTTTGTCAGTTAA 58.288 30.769 0.00 0.00 37.50 2.01
3744 4020 8.194104 ACATGCACTAATGTTTTGTCAGTTAAA 58.806 29.630 0.00 0.00 37.50 1.52
3745 4021 9.195411 CATGCACTAATGTTTTGTCAGTTAAAT 57.805 29.630 0.00 0.00 0.00 1.40
3746 4022 8.795786 TGCACTAATGTTTTGTCAGTTAAATC 57.204 30.769 0.00 0.00 0.00 2.17
3747 4023 8.629158 TGCACTAATGTTTTGTCAGTTAAATCT 58.371 29.630 0.00 0.00 0.00 2.40
3748 4024 9.463443 GCACTAATGTTTTGTCAGTTAAATCTT 57.537 29.630 0.00 0.00 0.00 2.40
3781 4057 9.476202 AAATTTAGCACAAATTACAAAGAGGAC 57.524 29.630 8.84 0.00 30.38 3.85
3782 4058 7.817418 TTTAGCACAAATTACAAAGAGGACT 57.183 32.000 0.00 0.00 0.00 3.85
3783 4059 8.911918 TTTAGCACAAATTACAAAGAGGACTA 57.088 30.769 0.00 0.00 0.00 2.59
3784 4060 8.911918 TTAGCACAAATTACAAAGAGGACTAA 57.088 30.769 0.00 0.00 0.00 2.24
3785 4061 9.515226 TTAGCACAAATTACAAAGAGGACTAAT 57.485 29.630 0.00 0.00 0.00 1.73
3787 4063 9.515226 AGCACAAATTACAAAGAGGACTAATAA 57.485 29.630 0.00 0.00 0.00 1.40
3795 4071 7.981102 ACAAAGAGGACTAATAAACCAGAAC 57.019 36.000 0.00 0.00 0.00 3.01
3796 4072 6.649557 ACAAAGAGGACTAATAAACCAGAACG 59.350 38.462 0.00 0.00 0.00 3.95
3797 4073 5.340439 AGAGGACTAATAAACCAGAACGG 57.660 43.478 0.00 0.00 42.50 4.44
3798 4074 5.021458 AGAGGACTAATAAACCAGAACGGA 58.979 41.667 0.00 0.00 38.63 4.69
3799 4075 5.127356 AGAGGACTAATAAACCAGAACGGAG 59.873 44.000 0.00 0.00 38.63 4.63
3800 4076 4.161754 AGGACTAATAAACCAGAACGGAGG 59.838 45.833 0.00 0.00 38.63 4.30
3801 4077 4.081254 GGACTAATAAACCAGAACGGAGGT 60.081 45.833 0.00 0.00 40.61 3.85
3802 4078 5.127682 GGACTAATAAACCAGAACGGAGGTA 59.872 44.000 0.00 0.00 37.07 3.08
3803 4079 6.218108 ACTAATAAACCAGAACGGAGGTAG 57.782 41.667 0.00 0.00 37.07 3.18
3804 4080 5.718607 ACTAATAAACCAGAACGGAGGTAGT 59.281 40.000 0.00 0.00 37.07 2.73
3805 4081 6.891908 ACTAATAAACCAGAACGGAGGTAGTA 59.108 38.462 0.00 0.00 37.07 1.82
3806 4082 5.848833 ATAAACCAGAACGGAGGTAGTAG 57.151 43.478 0.00 0.00 37.07 2.57
3807 4083 2.895242 ACCAGAACGGAGGTAGTAGT 57.105 50.000 0.00 0.00 36.07 2.73
3808 4084 3.166560 ACCAGAACGGAGGTAGTAGTT 57.833 47.619 0.00 0.00 36.07 2.24
3809 4085 3.504375 ACCAGAACGGAGGTAGTAGTTT 58.496 45.455 0.00 0.00 36.07 2.66
3810 4086 3.257624 ACCAGAACGGAGGTAGTAGTTTG 59.742 47.826 0.00 0.00 36.07 2.93
3811 4087 3.368116 CCAGAACGGAGGTAGTAGTTTGG 60.368 52.174 0.00 0.00 36.56 3.28
3812 4088 3.257624 CAGAACGGAGGTAGTAGTTTGGT 59.742 47.826 0.00 0.00 0.00 3.67
3813 4089 4.460382 CAGAACGGAGGTAGTAGTTTGGTA 59.540 45.833 0.00 0.00 0.00 3.25
3887 4165 2.163412 GCGTGGGCAATGAATACTTTCA 59.837 45.455 0.00 0.00 41.68 2.69
3933 4214 1.445871 CGGTTAGAAAAAGGGGGTCG 58.554 55.000 0.00 0.00 0.00 4.79
3937 4218 2.034436 TAGAAAAAGGGGGTCGAGGT 57.966 50.000 0.00 0.00 0.00 3.85
3955 4236 6.309251 GTCGAGGTCTCTTTCTCAAATACTTG 59.691 42.308 0.00 0.00 0.00 3.16
3956 4237 5.062809 CGAGGTCTCTTTCTCAAATACTTGC 59.937 44.000 0.00 0.00 32.14 4.01
3957 4238 5.869579 AGGTCTCTTTCTCAAATACTTGCA 58.130 37.500 0.00 0.00 32.14 4.08
3958 4239 5.703130 AGGTCTCTTTCTCAAATACTTGCAC 59.297 40.000 0.00 0.00 32.14 4.57
3964 4245 4.811555 TCTCAAATACTTGCACACACAC 57.188 40.909 0.00 0.00 32.14 3.82
3971 4252 2.945278 ACTTGCACACACACACAAAAG 58.055 42.857 0.00 0.00 0.00 2.27
3974 4255 0.814457 GCACACACACACAAAAGGGA 59.186 50.000 0.00 0.00 0.00 4.20
3975 4256 1.203523 GCACACACACACAAAAGGGAA 59.796 47.619 0.00 0.00 0.00 3.97
4024 4305 3.166489 ACTCTAGCTAACAATCGTGCC 57.834 47.619 0.00 0.00 0.00 5.01
4025 4306 2.159085 ACTCTAGCTAACAATCGTGCCC 60.159 50.000 0.00 0.00 0.00 5.36
4026 4307 1.828595 TCTAGCTAACAATCGTGCCCA 59.171 47.619 0.00 0.00 0.00 5.36
4027 4308 1.933853 CTAGCTAACAATCGTGCCCAC 59.066 52.381 0.00 0.00 0.00 4.61
4028 4309 0.036164 AGCTAACAATCGTGCCCACA 59.964 50.000 0.00 0.00 0.00 4.17
4029 4310 0.168128 GCTAACAATCGTGCCCACAC 59.832 55.000 0.00 0.00 43.76 3.82
4039 4320 2.888834 GTGCCCACACACTTCAATTT 57.111 45.000 0.00 0.00 46.61 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.734606 ACACGTGGTGTCATAACATTCG 59.265 45.455 21.57 0.00 43.92 3.34
58 65 5.057819 TGTTAACACGTGGTGTCATAACAT 58.942 37.500 18.38 0.00 46.79 2.71
91 103 5.013568 TCAAGGTGTCTAGTTTTCGTCAA 57.986 39.130 0.00 0.00 0.00 3.18
165 177 7.120726 GGAAACTTCTATGGCAAGTTAGCTTAA 59.879 37.037 2.93 0.00 42.14 1.85
237 249 7.301054 CAAGTTACTTCACCTATGAAAGCTTG 58.699 38.462 0.00 4.82 44.28 4.01
245 257 8.786826 TTTATCACCAAGTTACTTCACCTATG 57.213 34.615 0.00 0.00 0.00 2.23
247 259 9.802039 ATTTTTATCACCAAGTTACTTCACCTA 57.198 29.630 0.00 0.00 0.00 3.08
249 261 8.357402 ACATTTTTATCACCAAGTTACTTCACC 58.643 33.333 0.00 0.00 0.00 4.02
250 262 9.394477 GACATTTTTATCACCAAGTTACTTCAC 57.606 33.333 0.00 0.00 0.00 3.18
256 276 8.856153 TGCTAGACATTTTTATCACCAAGTTA 57.144 30.769 0.00 0.00 0.00 2.24
257 277 7.759489 TGCTAGACATTTTTATCACCAAGTT 57.241 32.000 0.00 0.00 0.00 2.66
258 278 7.759489 TTGCTAGACATTTTTATCACCAAGT 57.241 32.000 0.00 0.00 0.00 3.16
259 279 8.299570 AGTTTGCTAGACATTTTTATCACCAAG 58.700 33.333 0.00 0.00 0.00 3.61
260 280 8.177119 AGTTTGCTAGACATTTTTATCACCAA 57.823 30.769 0.00 0.00 0.00 3.67
261 281 7.759489 AGTTTGCTAGACATTTTTATCACCA 57.241 32.000 0.00 0.00 0.00 4.17
262 282 8.082242 ACAAGTTTGCTAGACATTTTTATCACC 58.918 33.333 0.00 0.00 0.00 4.02
263 283 8.905702 CACAAGTTTGCTAGACATTTTTATCAC 58.094 33.333 0.00 0.00 0.00 3.06
264 284 8.845227 TCACAAGTTTGCTAGACATTTTTATCA 58.155 29.630 0.00 0.00 0.00 2.15
265 285 9.677567 TTCACAAGTTTGCTAGACATTTTTATC 57.322 29.630 0.00 0.00 0.00 1.75
266 286 9.683069 CTTCACAAGTTTGCTAGACATTTTTAT 57.317 29.630 0.00 0.00 0.00 1.40
267 287 7.647715 GCTTCACAAGTTTGCTAGACATTTTTA 59.352 33.333 0.00 0.00 0.00 1.52
268 288 6.476706 GCTTCACAAGTTTGCTAGACATTTTT 59.523 34.615 0.00 0.00 0.00 1.94
273 293 3.540617 TGCTTCACAAGTTTGCTAGACA 58.459 40.909 0.00 0.00 0.00 3.41
319 339 6.736110 AAAAACGCAGGGAGTATACCTATA 57.264 37.500 0.00 0.00 36.32 1.31
324 344 8.429493 AGTAAATAAAAACGCAGGGAGTATAC 57.571 34.615 0.00 0.00 0.00 1.47
335 355 9.016623 GGAAATATGTGGAGTAAATAAAAACGC 57.983 33.333 0.00 0.00 0.00 4.84
405 427 9.702253 TGGATAAACTTGGCCAAACTTTATATA 57.298 29.630 26.46 19.65 0.00 0.86
406 428 8.602472 TGGATAAACTTGGCCAAACTTTATAT 57.398 30.769 26.46 17.12 0.00 0.86
407 429 8.423906 TTGGATAAACTTGGCCAAACTTTATA 57.576 30.769 26.46 16.76 37.46 0.98
408 430 6.926630 TGGATAAACTTGGCCAAACTTTAT 57.073 33.333 26.60 26.60 0.00 1.40
428 450 6.928979 TCGTGAAAGTTTAGATTGTTTGGA 57.071 33.333 0.00 0.00 0.00 3.53
430 452 9.658475 TGTTATCGTGAAAGTTTAGATTGTTTG 57.342 29.630 6.17 0.00 0.00 2.93
492 545 7.427989 TTTGGAACGGAGGAAGTAGTATATT 57.572 36.000 0.00 0.00 0.00 1.28
503 556 3.681593 CCACTTATTTTGGAACGGAGGA 58.318 45.455 0.00 0.00 36.02 3.71
504 557 2.163613 GCCACTTATTTTGGAACGGAGG 59.836 50.000 0.00 0.00 36.02 4.30
505 558 3.081804 AGCCACTTATTTTGGAACGGAG 58.918 45.455 0.00 0.00 36.02 4.63
506 559 3.149005 AGCCACTTATTTTGGAACGGA 57.851 42.857 0.00 0.00 36.02 4.69
507 560 3.934457 AAGCCACTTATTTTGGAACGG 57.066 42.857 0.00 0.00 36.02 4.44
508 561 7.883229 AAATTAAGCCACTTATTTTGGAACG 57.117 32.000 6.48 0.00 36.02 3.95
509 562 9.051679 ACAAAATTAAGCCACTTATTTTGGAAC 57.948 29.630 21.97 0.00 37.87 3.62
511 564 9.699703 GTACAAAATTAAGCCACTTATTTTGGA 57.300 29.630 21.97 17.20 37.87 3.53
512 565 9.705290 AGTACAAAATTAAGCCACTTATTTTGG 57.295 29.630 21.97 15.83 37.87 3.28
605 658 3.941483 GTGGATCATTGTACAAGACAGGG 59.059 47.826 14.65 0.00 39.88 4.45
607 660 3.618594 CGGTGGATCATTGTACAAGACAG 59.381 47.826 14.65 4.35 39.88 3.51
609 662 3.857052 TCGGTGGATCATTGTACAAGAC 58.143 45.455 14.65 5.22 0.00 3.01
666 720 7.197017 ACAACGAGCACAAAATGTAAAATGTA 58.803 30.769 0.00 0.00 0.00 2.29
667 721 6.039616 ACAACGAGCACAAAATGTAAAATGT 58.960 32.000 0.00 0.00 0.00 2.71
668 722 6.509317 ACAACGAGCACAAAATGTAAAATG 57.491 33.333 0.00 0.00 0.00 2.32
669 723 6.978080 AGAACAACGAGCACAAAATGTAAAAT 59.022 30.769 0.00 0.00 0.00 1.82
670 724 6.326375 AGAACAACGAGCACAAAATGTAAAA 58.674 32.000 0.00 0.00 0.00 1.52
671 725 5.885881 AGAACAACGAGCACAAAATGTAAA 58.114 33.333 0.00 0.00 0.00 2.01
672 726 5.295787 AGAGAACAACGAGCACAAAATGTAA 59.704 36.000 0.00 0.00 0.00 2.41
719 790 2.613691 GTTGGACGCGAGAATTAAGGA 58.386 47.619 15.93 0.00 0.00 3.36
789 862 0.682852 TTTCGAGTCGTGGATGGGTT 59.317 50.000 13.12 0.00 0.00 4.11
964 1045 1.532604 CGGAAGAGGGTTTTTGGGCC 61.533 60.000 0.00 0.00 0.00 5.80
1015 1096 4.144703 GACGAGGAAGGGACGGCC 62.145 72.222 0.00 0.00 0.00 6.13
1024 1105 2.528127 TGGCTTGGGGACGAGGAA 60.528 61.111 0.00 0.00 42.59 3.36
1719 1889 0.535335 TGTGGAGGCCAACGACTATC 59.465 55.000 5.01 0.00 34.18 2.08
1722 1892 1.227853 GTTGTGGAGGCCAACGACT 60.228 57.895 5.01 0.00 34.18 4.18
1728 1898 1.456705 GGTTTGGTTGTGGAGGCCA 60.457 57.895 5.01 0.00 0.00 5.36
2211 2384 2.283529 GCCCTTGGACAGGTCTCGA 61.284 63.158 0.00 0.00 42.02 4.04
2277 2450 2.754658 TCGAAGCCGAGGGGAGAC 60.755 66.667 0.00 0.00 40.30 3.36
2680 2871 1.237285 GCATTGCCTTCGTGGTGACT 61.237 55.000 0.00 0.00 38.35 3.41
3051 3263 0.324738 TCTGATCCCTCTCGCCAGTT 60.325 55.000 0.00 0.00 0.00 3.16
3079 3291 5.880054 TGAGCTTAAGATGCAGTAAAACC 57.120 39.130 6.67 0.00 0.00 3.27
3083 3295 6.851222 GCTATTGAGCTTAAGATGCAGTAA 57.149 37.500 6.67 0.00 45.98 2.24
3113 3326 1.867233 CAACAACAGAGACCCGTGAAG 59.133 52.381 0.00 0.00 0.00 3.02
3147 3360 7.592533 ACATCAAGAATGACGAAATGACAAAAG 59.407 33.333 0.00 0.00 38.69 2.27
3154 3367 4.156556 ACCCACATCAAGAATGACGAAATG 59.843 41.667 0.00 0.00 38.69 2.32
3225 3443 1.381056 TGTTTTGTGCCAGCCACCT 60.381 52.632 0.00 0.00 44.01 4.00
3226 3444 1.227234 GTGTTTTGTGCCAGCCACC 60.227 57.895 0.00 0.00 44.01 4.61
3245 3519 6.410540 AGTTCCTGAATATGAAGGACTGAAC 58.589 40.000 6.21 3.29 42.35 3.18
3289 3563 2.670414 GCAAGGTTCAGAGTCTGATTCG 59.330 50.000 23.23 11.40 40.39 3.34
3290 3564 3.668447 TGCAAGGTTCAGAGTCTGATTC 58.332 45.455 23.23 17.78 40.39 2.52
3340 3616 4.235372 ACTTAGATTTGGATCGGAGGGAT 58.765 43.478 0.00 0.00 37.37 3.85
3363 3639 4.031878 GTGCTTTAGCTAAACTGCTAGTCG 59.968 45.833 23.28 10.52 44.94 4.18
3365 3641 4.894784 TGTGCTTTAGCTAAACTGCTAGT 58.105 39.130 23.28 0.00 44.94 2.57
3366 3642 5.814705 AGATGTGCTTTAGCTAAACTGCTAG 59.185 40.000 23.28 12.26 44.94 3.42
3367 3643 5.734720 AGATGTGCTTTAGCTAAACTGCTA 58.265 37.500 23.28 15.91 43.74 3.49
3368 3644 4.583871 AGATGTGCTTTAGCTAAACTGCT 58.416 39.130 23.28 9.90 46.11 4.24
3369 3645 4.954092 AGATGTGCTTTAGCTAAACTGC 57.046 40.909 14.96 17.16 42.66 4.40
3370 3646 7.849496 CATCTAGATGTGCTTTAGCTAAACTG 58.151 38.462 22.42 7.85 42.66 3.16
3386 3662 7.336176 ATGCAATACTTATGGCACATCTAGATG 59.664 37.037 27.63 27.63 44.77 2.90
3387 3663 7.400439 ATGCAATACTTATGGCACATCTAGAT 58.600 34.615 0.00 0.00 44.77 1.98
3388 3664 6.772605 ATGCAATACTTATGGCACATCTAGA 58.227 36.000 0.16 0.00 44.77 2.43
3389 3665 8.728337 ATATGCAATACTTATGGCACATCTAG 57.272 34.615 0.16 0.00 44.77 2.43
3390 3666 8.722480 GATATGCAATACTTATGGCACATCTA 57.278 34.615 8.94 0.00 44.77 1.98
3391 3667 7.400439 AGATATGCAATACTTATGGCACATCT 58.600 34.615 11.99 11.99 46.66 2.90
3392 3668 7.621428 AGATATGCAATACTTATGGCACATC 57.379 36.000 8.33 8.33 44.77 3.06
3393 3669 9.170734 CTTAGATATGCAATACTTATGGCACAT 57.829 33.333 0.16 0.00 44.77 3.21
3394 3670 8.156820 ACTTAGATATGCAATACTTATGGCACA 58.843 33.333 0.16 0.00 44.77 4.57
3395 3671 8.553459 ACTTAGATATGCAATACTTATGGCAC 57.447 34.615 0.16 0.00 44.77 5.01
3396 3672 8.597167 AGACTTAGATATGCAATACTTATGGCA 58.403 33.333 0.69 0.69 45.92 4.92
3397 3673 9.442047 AAGACTTAGATATGCAATACTTATGGC 57.558 33.333 0.00 0.00 33.16 4.40
3417 3693 9.667107 TTCCGTAAGATCAATGATTTAAGACTT 57.333 29.630 0.00 0.00 43.02 3.01
3418 3694 9.319143 CTTCCGTAAGATCAATGATTTAAGACT 57.681 33.333 0.00 0.00 43.02 3.24
3419 3695 9.314321 TCTTCCGTAAGATCAATGATTTAAGAC 57.686 33.333 0.00 0.00 36.80 3.01
3436 3712 9.268268 GGAAATATACACATGAATCTTCCGTAA 57.732 33.333 0.00 0.00 0.00 3.18
3437 3713 7.876068 GGGAAATATACACATGAATCTTCCGTA 59.124 37.037 0.00 0.00 32.34 4.02
3438 3714 6.710744 GGGAAATATACACATGAATCTTCCGT 59.289 38.462 0.00 0.00 32.34 4.69
3439 3715 6.936900 AGGGAAATATACACATGAATCTTCCG 59.063 38.462 0.00 0.00 32.34 4.30
3440 3716 7.391833 GGAGGGAAATATACACATGAATCTTCC 59.608 40.741 0.00 6.29 0.00 3.46
3441 3717 8.160106 AGGAGGGAAATATACACATGAATCTTC 58.840 37.037 0.00 0.00 0.00 2.87
3442 3718 8.050316 AGGAGGGAAATATACACATGAATCTT 57.950 34.615 0.00 0.00 0.00 2.40
3443 3719 7.639062 AGGAGGGAAATATACACATGAATCT 57.361 36.000 0.00 0.00 0.00 2.40
3444 3720 8.697507 AAAGGAGGGAAATATACACATGAATC 57.302 34.615 0.00 0.00 0.00 2.52
3445 3721 9.492730 AAAAAGGAGGGAAATATACACATGAAT 57.507 29.630 0.00 0.00 0.00 2.57
3446 3722 8.893563 AAAAAGGAGGGAAATATACACATGAA 57.106 30.769 0.00 0.00 0.00 2.57
3447 3723 8.336235 AGAAAAAGGAGGGAAATATACACATGA 58.664 33.333 0.00 0.00 0.00 3.07
3448 3724 8.525290 AGAAAAAGGAGGGAAATATACACATG 57.475 34.615 0.00 0.00 0.00 3.21
3449 3725 9.547279 AAAGAAAAAGGAGGGAAATATACACAT 57.453 29.630 0.00 0.00 0.00 3.21
3450 3726 8.950007 AAAGAAAAAGGAGGGAAATATACACA 57.050 30.769 0.00 0.00 0.00 3.72
3456 3732 9.877222 AGAAGTAAAAGAAAAAGGAGGGAAATA 57.123 29.630 0.00 0.00 0.00 1.40
3457 3733 8.783660 AGAAGTAAAAGAAAAAGGAGGGAAAT 57.216 30.769 0.00 0.00 0.00 2.17
3458 3734 8.603898 AAGAAGTAAAAGAAAAAGGAGGGAAA 57.396 30.769 0.00 0.00 0.00 3.13
3459 3735 9.350951 CTAAGAAGTAAAAGAAAAAGGAGGGAA 57.649 33.333 0.00 0.00 0.00 3.97
3460 3736 7.942894 CCTAAGAAGTAAAAGAAAAAGGAGGGA 59.057 37.037 0.00 0.00 0.00 4.20
3461 3737 7.309255 GCCTAAGAAGTAAAAGAAAAAGGAGGG 60.309 40.741 0.00 0.00 0.00 4.30
3462 3738 7.448777 AGCCTAAGAAGTAAAAGAAAAAGGAGG 59.551 37.037 0.00 0.00 0.00 4.30
3463 3739 8.397575 AGCCTAAGAAGTAAAAGAAAAAGGAG 57.602 34.615 0.00 0.00 0.00 3.69
3464 3740 8.630037 CAAGCCTAAGAAGTAAAAGAAAAAGGA 58.370 33.333 0.00 0.00 0.00 3.36
3465 3741 8.630037 TCAAGCCTAAGAAGTAAAAGAAAAAGG 58.370 33.333 0.00 0.00 0.00 3.11
3468 3744 9.965824 CAATCAAGCCTAAGAAGTAAAAGAAAA 57.034 29.630 0.00 0.00 0.00 2.29
3469 3745 9.349713 TCAATCAAGCCTAAGAAGTAAAAGAAA 57.650 29.630 0.00 0.00 0.00 2.52
3470 3746 8.918202 TCAATCAAGCCTAAGAAGTAAAAGAA 57.082 30.769 0.00 0.00 0.00 2.52
3471 3747 7.607991 CCTCAATCAAGCCTAAGAAGTAAAAGA 59.392 37.037 0.00 0.00 0.00 2.52
3472 3748 7.148171 CCCTCAATCAAGCCTAAGAAGTAAAAG 60.148 40.741 0.00 0.00 0.00 2.27
3473 3749 6.659242 CCCTCAATCAAGCCTAAGAAGTAAAA 59.341 38.462 0.00 0.00 0.00 1.52
3474 3750 6.012858 TCCCTCAATCAAGCCTAAGAAGTAAA 60.013 38.462 0.00 0.00 0.00 2.01
3475 3751 5.487488 TCCCTCAATCAAGCCTAAGAAGTAA 59.513 40.000 0.00 0.00 0.00 2.24
3476 3752 5.030147 TCCCTCAATCAAGCCTAAGAAGTA 58.970 41.667 0.00 0.00 0.00 2.24
3477 3753 3.846588 TCCCTCAATCAAGCCTAAGAAGT 59.153 43.478 0.00 0.00 0.00 3.01
3478 3754 4.080638 AGTCCCTCAATCAAGCCTAAGAAG 60.081 45.833 0.00 0.00 0.00 2.85
3479 3755 3.846588 AGTCCCTCAATCAAGCCTAAGAA 59.153 43.478 0.00 0.00 0.00 2.52
3480 3756 3.198635 CAGTCCCTCAATCAAGCCTAAGA 59.801 47.826 0.00 0.00 0.00 2.10
3481 3757 3.198635 TCAGTCCCTCAATCAAGCCTAAG 59.801 47.826 0.00 0.00 0.00 2.18
3482 3758 3.181329 TCAGTCCCTCAATCAAGCCTAA 58.819 45.455 0.00 0.00 0.00 2.69
3483 3759 2.768527 CTCAGTCCCTCAATCAAGCCTA 59.231 50.000 0.00 0.00 0.00 3.93
3484 3760 1.558756 CTCAGTCCCTCAATCAAGCCT 59.441 52.381 0.00 0.00 0.00 4.58
3485 3761 1.556911 TCTCAGTCCCTCAATCAAGCC 59.443 52.381 0.00 0.00 0.00 4.35
3486 3762 3.557228 ATCTCAGTCCCTCAATCAAGC 57.443 47.619 0.00 0.00 0.00 4.01
3487 3763 4.996122 GCATATCTCAGTCCCTCAATCAAG 59.004 45.833 0.00 0.00 0.00 3.02
3488 3764 4.409901 TGCATATCTCAGTCCCTCAATCAA 59.590 41.667 0.00 0.00 0.00 2.57
3489 3765 3.969312 TGCATATCTCAGTCCCTCAATCA 59.031 43.478 0.00 0.00 0.00 2.57
3490 3766 4.613925 TGCATATCTCAGTCCCTCAATC 57.386 45.455 0.00 0.00 0.00 2.67
3491 3767 5.579753 ATTGCATATCTCAGTCCCTCAAT 57.420 39.130 0.00 0.00 0.00 2.57
3492 3768 6.499106 TTATTGCATATCTCAGTCCCTCAA 57.501 37.500 0.00 0.00 0.00 3.02
3493 3769 6.692849 ATTATTGCATATCTCAGTCCCTCA 57.307 37.500 0.00 0.00 0.00 3.86
3494 3770 7.768120 CCTAATTATTGCATATCTCAGTCCCTC 59.232 40.741 0.00 0.00 0.00 4.30
3495 3771 7.311549 CCCTAATTATTGCATATCTCAGTCCCT 60.312 40.741 0.00 0.00 0.00 4.20
3496 3772 6.825721 CCCTAATTATTGCATATCTCAGTCCC 59.174 42.308 0.00 0.00 0.00 4.46
3497 3773 6.317391 GCCCTAATTATTGCATATCTCAGTCC 59.683 42.308 0.00 0.00 0.00 3.85
3498 3774 6.881065 TGCCCTAATTATTGCATATCTCAGTC 59.119 38.462 5.26 0.00 0.00 3.51
3499 3775 6.656693 GTGCCCTAATTATTGCATATCTCAGT 59.343 38.462 11.00 0.00 35.96 3.41
3500 3776 6.656270 TGTGCCCTAATTATTGCATATCTCAG 59.344 38.462 11.00 0.00 35.96 3.35
3501 3777 6.541907 TGTGCCCTAATTATTGCATATCTCA 58.458 36.000 11.00 3.57 35.96 3.27
3502 3778 7.636150 ATGTGCCCTAATTATTGCATATCTC 57.364 36.000 11.00 1.53 35.96 2.75
3503 3779 7.636150 GATGTGCCCTAATTATTGCATATCT 57.364 36.000 23.83 8.04 44.19 1.98
3504 3780 7.636150 AGATGTGCCCTAATTATTGCATATC 57.364 36.000 23.76 23.76 46.39 1.63
3505 3781 9.532494 TTTAGATGTGCCCTAATTATTGCATAT 57.468 29.630 14.38 14.38 38.10 1.78
3506 3782 8.932434 TTTAGATGTGCCCTAATTATTGCATA 57.068 30.769 11.00 9.36 35.96 3.14
3507 3783 7.838079 TTTAGATGTGCCCTAATTATTGCAT 57.162 32.000 11.00 1.64 35.96 3.96
3508 3784 7.287466 ACATTTAGATGTGCCCTAATTATTGCA 59.713 33.333 0.00 5.26 44.64 4.08
3509 3785 7.661040 ACATTTAGATGTGCCCTAATTATTGC 58.339 34.615 0.00 0.62 44.64 3.56
3524 3800 6.099341 GGTTTGTTTAGGGCACATTTAGATG 58.901 40.000 0.00 0.00 39.25 2.90
3525 3801 5.186992 GGGTTTGTTTAGGGCACATTTAGAT 59.813 40.000 0.00 0.00 0.00 1.98
3526 3802 4.525100 GGGTTTGTTTAGGGCACATTTAGA 59.475 41.667 0.00 0.00 0.00 2.10
3527 3803 4.282195 TGGGTTTGTTTAGGGCACATTTAG 59.718 41.667 0.00 0.00 0.00 1.85
3528 3804 4.039366 GTGGGTTTGTTTAGGGCACATTTA 59.961 41.667 0.00 0.00 0.00 1.40
3529 3805 3.041946 TGGGTTTGTTTAGGGCACATTT 58.958 40.909 0.00 0.00 0.00 2.32
3530 3806 2.367241 GTGGGTTTGTTTAGGGCACATT 59.633 45.455 0.00 0.00 0.00 2.71
3531 3807 1.967779 GTGGGTTTGTTTAGGGCACAT 59.032 47.619 0.00 0.00 0.00 3.21
3532 3808 1.063567 AGTGGGTTTGTTTAGGGCACA 60.064 47.619 0.00 0.00 0.00 4.57
3533 3809 1.699730 AGTGGGTTTGTTTAGGGCAC 58.300 50.000 0.00 0.00 0.00 5.01
3534 3810 2.463047 AAGTGGGTTTGTTTAGGGCA 57.537 45.000 0.00 0.00 0.00 5.36
3535 3811 5.258841 AGTATAAGTGGGTTTGTTTAGGGC 58.741 41.667 0.00 0.00 0.00 5.19
3536 3812 8.866970 TTTAGTATAAGTGGGTTTGTTTAGGG 57.133 34.615 0.00 0.00 0.00 3.53
3540 3816 9.192642 ACAGTTTTAGTATAAGTGGGTTTGTTT 57.807 29.630 11.42 0.00 31.65 2.83
3541 3817 8.626526 CACAGTTTTAGTATAAGTGGGTTTGTT 58.373 33.333 11.42 0.00 31.65 2.83
3542 3818 7.776500 ACACAGTTTTAGTATAAGTGGGTTTGT 59.224 33.333 9.52 4.18 38.99 2.83
3543 3819 8.161699 ACACAGTTTTAGTATAAGTGGGTTTG 57.838 34.615 9.52 3.69 38.99 2.93
3544 3820 7.994334 TGACACAGTTTTAGTATAAGTGGGTTT 59.006 33.333 14.79 0.00 41.39 3.27
3545 3821 7.511268 TGACACAGTTTTAGTATAAGTGGGTT 58.489 34.615 14.79 2.73 41.39 4.11
3546 3822 7.069877 TGACACAGTTTTAGTATAAGTGGGT 57.930 36.000 13.86 13.86 43.38 4.51
3547 3823 7.972832 TTGACACAGTTTTAGTATAAGTGGG 57.027 36.000 8.41 8.41 35.83 4.61
3557 3833 7.538678 GCAGGACATTAATTGACACAGTTTTAG 59.461 37.037 0.00 0.00 0.00 1.85
3566 3842 9.461312 ACTAATAAAGCAGGACATTAATTGACA 57.539 29.630 0.00 0.00 0.00 3.58
3571 3847 8.494433 TGAGGACTAATAAAGCAGGACATTAAT 58.506 33.333 0.00 0.00 0.00 1.40
3579 3855 5.091261 ACAGTGAGGACTAATAAAGCAGG 57.909 43.478 0.00 0.00 0.00 4.85
3581 3857 7.272978 GGATTACAGTGAGGACTAATAAAGCA 58.727 38.462 0.00 0.00 0.00 3.91
3582 3858 6.421202 CGGATTACAGTGAGGACTAATAAAGC 59.579 42.308 0.00 0.00 0.00 3.51
3583 3859 7.435488 CACGGATTACAGTGAGGACTAATAAAG 59.565 40.741 0.00 0.00 42.97 1.85
3584 3860 7.262772 CACGGATTACAGTGAGGACTAATAAA 58.737 38.462 0.00 0.00 42.97 1.40
3585 3861 6.682113 GCACGGATTACAGTGAGGACTAATAA 60.682 42.308 0.00 0.00 42.97 1.40
3586 3862 5.221185 GCACGGATTACAGTGAGGACTAATA 60.221 44.000 0.00 0.00 42.97 0.98
3587 3863 4.441634 GCACGGATTACAGTGAGGACTAAT 60.442 45.833 0.00 0.00 42.97 1.73
3589 3865 2.426024 GCACGGATTACAGTGAGGACTA 59.574 50.000 0.00 0.00 42.97 2.59
3593 3869 0.249120 TGGCACGGATTACAGTGAGG 59.751 55.000 0.00 0.00 42.97 3.86
3594 3870 2.093306 TTGGCACGGATTACAGTGAG 57.907 50.000 0.00 0.00 42.97 3.51
3596 3872 3.848272 AATTTGGCACGGATTACAGTG 57.152 42.857 0.00 0.00 43.13 3.66
3598 3874 4.804108 TCAAAATTTGGCACGGATTACAG 58.196 39.130 5.83 0.00 0.00 2.74
3600 3876 5.406649 TGATCAAAATTTGGCACGGATTAC 58.593 37.500 5.83 0.00 0.00 1.89
3601 3877 5.651387 TGATCAAAATTTGGCACGGATTA 57.349 34.783 5.83 0.00 0.00 1.75
3603 3879 4.741321 ATGATCAAAATTTGGCACGGAT 57.259 36.364 5.83 0.00 0.00 4.18
3604 3880 5.651387 TTATGATCAAAATTTGGCACGGA 57.349 34.783 5.83 0.00 0.00 4.69
3637 3913 6.572167 TTAGTGACATGCATGAACATTTCA 57.428 33.333 32.75 20.62 45.01 2.69
3638 3914 7.872163 TTTTAGTGACATGCATGAACATTTC 57.128 32.000 32.75 18.29 0.00 2.17
3639 3915 8.836268 ATTTTTAGTGACATGCATGAACATTT 57.164 26.923 32.75 21.69 0.00 2.32
3640 3916 8.089597 TGATTTTTAGTGACATGCATGAACATT 58.910 29.630 32.75 25.62 0.00 2.71
3641 3917 7.604549 TGATTTTTAGTGACATGCATGAACAT 58.395 30.769 32.75 17.08 0.00 2.71
3642 3918 6.979465 TGATTTTTAGTGACATGCATGAACA 58.021 32.000 32.75 25.57 0.00 3.18
3643 3919 9.740239 ATATGATTTTTAGTGACATGCATGAAC 57.260 29.630 32.75 26.35 0.00 3.18
3644 3920 9.955208 GATATGATTTTTAGTGACATGCATGAA 57.045 29.630 32.75 17.28 0.00 2.57
3645 3921 9.122779 TGATATGATTTTTAGTGACATGCATGA 57.877 29.630 32.75 9.00 0.00 3.07
3646 3922 9.908152 ATGATATGATTTTTAGTGACATGCATG 57.092 29.630 25.09 25.09 0.00 4.06
3648 3924 9.738832 CAATGATATGATTTTTAGTGACATGCA 57.261 29.630 0.00 0.00 0.00 3.96
3649 3925 9.955208 TCAATGATATGATTTTTAGTGACATGC 57.045 29.630 0.00 0.00 0.00 4.06
3676 3952 9.325150 CGTTGAATTCGTATTTGAACATAGTTT 57.675 29.630 0.04 0.00 0.00 2.66
3677 3953 8.714179 TCGTTGAATTCGTATTTGAACATAGTT 58.286 29.630 0.04 0.00 0.00 2.24
3678 3954 8.246908 TCGTTGAATTCGTATTTGAACATAGT 57.753 30.769 0.04 0.00 0.00 2.12
3697 3973 9.449550 GCATGTCAATGAAAATTATATCGTTGA 57.550 29.630 14.60 14.60 44.87 3.18
3698 3974 9.235537 TGCATGTCAATGAAAATTATATCGTTG 57.764 29.630 11.64 11.64 41.67 4.10
3699 3975 9.236691 GTGCATGTCAATGAAAATTATATCGTT 57.763 29.630 0.00 0.00 35.67 3.85
3700 3976 8.623903 AGTGCATGTCAATGAAAATTATATCGT 58.376 29.630 0.00 0.00 35.67 3.73
3706 3982 9.926158 AACATTAGTGCATGTCAATGAAAATTA 57.074 25.926 15.21 0.00 36.30 1.40
3707 3983 8.836268 AACATTAGTGCATGTCAATGAAAATT 57.164 26.923 15.21 2.13 36.30 1.82
3708 3984 8.836268 AAACATTAGTGCATGTCAATGAAAAT 57.164 26.923 15.21 0.57 36.30 1.82
3709 3985 8.549548 CAAAACATTAGTGCATGTCAATGAAAA 58.450 29.630 15.21 0.00 36.30 2.29
3710 3986 7.710044 ACAAAACATTAGTGCATGTCAATGAAA 59.290 29.630 15.21 0.00 36.30 2.69
3711 3987 7.208777 ACAAAACATTAGTGCATGTCAATGAA 58.791 30.769 15.21 2.02 36.30 2.57
3712 3988 6.747125 ACAAAACATTAGTGCATGTCAATGA 58.253 32.000 15.21 2.45 36.30 2.57
3713 3989 6.641723 TGACAAAACATTAGTGCATGTCAATG 59.358 34.615 10.64 10.06 39.95 2.82
3714 3990 6.747125 TGACAAAACATTAGTGCATGTCAAT 58.253 32.000 10.64 0.00 39.95 2.57
3715 3991 6.141560 TGACAAAACATTAGTGCATGTCAA 57.858 33.333 10.64 0.00 39.95 3.18
3716 3992 5.299028 ACTGACAAAACATTAGTGCATGTCA 59.701 36.000 12.07 12.07 40.29 3.58
3717 3993 5.762045 ACTGACAAAACATTAGTGCATGTC 58.238 37.500 4.70 4.70 36.30 3.06
3718 3994 5.772825 ACTGACAAAACATTAGTGCATGT 57.227 34.783 0.00 0.00 39.17 3.21
3719 3995 8.572828 TTTAACTGACAAAACATTAGTGCATG 57.427 30.769 0.00 0.00 0.00 4.06
3720 3996 9.410556 GATTTAACTGACAAAACATTAGTGCAT 57.589 29.630 0.00 0.00 0.00 3.96
3721 3997 8.629158 AGATTTAACTGACAAAACATTAGTGCA 58.371 29.630 0.00 0.00 0.00 4.57
3722 3998 9.463443 AAGATTTAACTGACAAAACATTAGTGC 57.537 29.630 0.00 0.00 0.00 4.40
3755 4031 9.476202 GTCCTCTTTGTAATTTGTGCTAAATTT 57.524 29.630 14.43 0.00 32.64 1.82
3756 4032 8.860088 AGTCCTCTTTGTAATTTGTGCTAAATT 58.140 29.630 13.92 13.92 34.55 1.82
3757 4033 8.409358 AGTCCTCTTTGTAATTTGTGCTAAAT 57.591 30.769 0.00 0.00 0.00 1.40
3758 4034 7.817418 AGTCCTCTTTGTAATTTGTGCTAAA 57.183 32.000 0.00 0.00 0.00 1.85
3759 4035 8.911918 TTAGTCCTCTTTGTAATTTGTGCTAA 57.088 30.769 0.00 0.00 0.00 3.09
3761 4037 9.515226 TTATTAGTCCTCTTTGTAATTTGTGCT 57.485 29.630 0.00 0.00 0.00 4.40
3769 4045 9.498176 GTTCTGGTTTATTAGTCCTCTTTGTAA 57.502 33.333 0.00 0.00 0.00 2.41
3770 4046 7.816031 CGTTCTGGTTTATTAGTCCTCTTTGTA 59.184 37.037 0.00 0.00 0.00 2.41
3771 4047 6.649557 CGTTCTGGTTTATTAGTCCTCTTTGT 59.350 38.462 0.00 0.00 0.00 2.83
3772 4048 6.092259 CCGTTCTGGTTTATTAGTCCTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
3773 4049 6.013984 TCCGTTCTGGTTTATTAGTCCTCTTT 60.014 38.462 0.00 0.00 39.52 2.52
3774 4050 5.482878 TCCGTTCTGGTTTATTAGTCCTCTT 59.517 40.000 0.00 0.00 39.52 2.85
3775 4051 5.021458 TCCGTTCTGGTTTATTAGTCCTCT 58.979 41.667 0.00 0.00 39.52 3.69
3776 4052 5.334724 TCCGTTCTGGTTTATTAGTCCTC 57.665 43.478 0.00 0.00 39.52 3.71
3777 4053 4.161754 CCTCCGTTCTGGTTTATTAGTCCT 59.838 45.833 0.00 0.00 39.52 3.85
3778 4054 4.081254 ACCTCCGTTCTGGTTTATTAGTCC 60.081 45.833 0.00 0.00 39.52 3.85
3779 4055 5.082251 ACCTCCGTTCTGGTTTATTAGTC 57.918 43.478 0.00 0.00 39.52 2.59
3780 4056 5.718607 ACTACCTCCGTTCTGGTTTATTAGT 59.281 40.000 0.00 0.00 39.52 2.24
3781 4057 6.218108 ACTACCTCCGTTCTGGTTTATTAG 57.782 41.667 0.00 0.00 39.52 1.73
3782 4058 6.891908 ACTACTACCTCCGTTCTGGTTTATTA 59.108 38.462 0.00 0.00 39.52 0.98
3783 4059 5.718607 ACTACTACCTCCGTTCTGGTTTATT 59.281 40.000 0.00 0.00 39.52 1.40
3784 4060 5.267587 ACTACTACCTCCGTTCTGGTTTAT 58.732 41.667 0.00 0.00 39.52 1.40
3785 4061 4.666512 ACTACTACCTCCGTTCTGGTTTA 58.333 43.478 0.00 0.00 39.52 2.01
3786 4062 3.504375 ACTACTACCTCCGTTCTGGTTT 58.496 45.455 0.00 0.00 39.52 3.27
3787 4063 3.166560 ACTACTACCTCCGTTCTGGTT 57.833 47.619 0.00 0.00 39.52 3.67
3788 4064 2.895242 ACTACTACCTCCGTTCTGGT 57.105 50.000 0.00 0.00 39.52 4.00
3789 4065 3.368116 CCAAACTACTACCTCCGTTCTGG 60.368 52.174 0.00 0.00 40.09 3.86
3790 4066 3.257624 ACCAAACTACTACCTCCGTTCTG 59.742 47.826 0.00 0.00 0.00 3.02
3791 4067 3.504375 ACCAAACTACTACCTCCGTTCT 58.496 45.455 0.00 0.00 0.00 3.01
3792 4068 3.949842 ACCAAACTACTACCTCCGTTC 57.050 47.619 0.00 0.00 0.00 3.95
3793 4069 4.411013 ACTACCAAACTACTACCTCCGTT 58.589 43.478 0.00 0.00 0.00 4.44
3794 4070 4.039603 ACTACCAAACTACTACCTCCGT 57.960 45.455 0.00 0.00 0.00 4.69
3795 4071 5.415701 TGTTACTACCAAACTACTACCTCCG 59.584 44.000 0.00 0.00 0.00 4.63
3796 4072 6.840780 TGTTACTACCAAACTACTACCTCC 57.159 41.667 0.00 0.00 0.00 4.30
3797 4073 9.183368 ACTATGTTACTACCAAACTACTACCTC 57.817 37.037 0.00 0.00 0.00 3.85
3798 4074 9.539194 AACTATGTTACTACCAAACTACTACCT 57.461 33.333 0.00 0.00 0.00 3.08
3855 4133 0.814457 TGCCCACGCAATCAAATACC 59.186 50.000 0.00 0.00 43.74 2.73
3910 4188 2.380932 ACCCCCTTTTTCTAACCGGATT 59.619 45.455 9.46 0.67 0.00 3.01
3911 4189 1.997791 ACCCCCTTTTTCTAACCGGAT 59.002 47.619 9.46 0.00 0.00 4.18
3913 4191 1.830279 GACCCCCTTTTTCTAACCGG 58.170 55.000 0.00 0.00 0.00 5.28
3926 4207 0.615261 AGAAAGAGACCTCGACCCCC 60.615 60.000 0.00 0.00 34.09 5.40
3933 4214 5.934625 TGCAAGTATTTGAGAAAGAGACCTC 59.065 40.000 1.56 0.00 36.36 3.85
3937 4218 6.017934 GTGTGTGCAAGTATTTGAGAAAGAGA 60.018 38.462 1.56 0.00 36.36 3.10
3955 4236 0.814457 TCCCTTTTGTGTGTGTGTGC 59.186 50.000 0.00 0.00 0.00 4.57
3956 4237 2.491693 ACTTCCCTTTTGTGTGTGTGTG 59.508 45.455 0.00 0.00 0.00 3.82
3957 4238 2.802719 ACTTCCCTTTTGTGTGTGTGT 58.197 42.857 0.00 0.00 0.00 3.72
3958 4239 5.067153 TGAATACTTCCCTTTTGTGTGTGTG 59.933 40.000 0.00 0.00 0.00 3.82
3991 4272 9.793252 TTGTTAGCTAGAGTACTTTATAAACCG 57.207 33.333 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.