Multiple sequence alignment - TraesCS4D01G204400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G204400 chr4D 100.000 2942 0 0 1 2942 351755127 351752186 0.000000e+00 5433
1 TraesCS4D01G204400 chr4D 97.778 90 2 0 2853 2942 420336291 420336380 3.930000e-34 156
2 TraesCS4D01G204400 chr5D 96.624 2429 79 3 1 2426 242128757 242126329 0.000000e+00 4028
3 TraesCS4D01G204400 chr5D 96.580 2427 82 1 1 2426 254515901 254518327 0.000000e+00 4021
4 TraesCS4D01G204400 chr5D 96.376 2428 86 2 1 2426 337719086 337721513 0.000000e+00 3995
5 TraesCS4D01G204400 chr5D 96.087 2428 93 2 1 2426 292024443 292022016 0.000000e+00 3956
6 TraesCS4D01G204400 chr5D 95.303 2427 113 1 1 2426 220439880 220437454 0.000000e+00 3849
7 TraesCS4D01G204400 chr5D 96.270 429 16 0 2425 2853 242126302 242125874 0.000000e+00 704
8 TraesCS4D01G204400 chr5D 96.279 430 15 1 2425 2853 254518356 254518785 0.000000e+00 704
9 TraesCS4D01G204400 chr5D 96.037 429 17 0 2425 2853 220437426 220436998 0.000000e+00 699
10 TraesCS4D01G204400 chr5D 96.037 429 17 0 2425 2853 292021988 292021560 0.000000e+00 699
11 TraesCS4D01G204400 chr5D 97.778 90 2 0 2853 2942 313612187 313612098 3.930000e-34 156
12 TraesCS4D01G204400 chr6D 96.334 2428 86 3 1 2426 451809953 451812379 0.000000e+00 3988
13 TraesCS4D01G204400 chr6D 96.737 429 14 0 2425 2853 65486055 65485627 0.000000e+00 715
14 TraesCS4D01G204400 chr6D 97.778 90 2 0 2853 2942 244461905 244461994 3.930000e-34 156
15 TraesCS4D01G204400 chrUn 95.929 2432 92 4 1 2426 94201935 94204365 0.000000e+00 3936
16 TraesCS4D01G204400 chrUn 96.737 429 14 0 2425 2853 94204393 94204821 0.000000e+00 715
17 TraesCS4D01G204400 chr1A 95.021 2410 118 2 19 2426 99181609 99179200 0.000000e+00 3784
18 TraesCS4D01G204400 chr1A 98.889 90 1 0 2853 2942 413359617 413359706 8.440000e-36 161
19 TraesCS4D01G204400 chr1A 97.778 90 2 0 2853 2942 374001291 374001380 3.930000e-34 156
20 TraesCS4D01G204400 chr2A 92.637 2431 174 4 1 2426 290200386 290197956 0.000000e+00 3493
21 TraesCS4D01G204400 chr1D 96.956 427 12 1 2425 2850 434513764 434514190 0.000000e+00 715
22 TraesCS4D01G204400 chr1D 97.778 90 2 0 2853 2942 228166948 228166859 3.930000e-34 156
23 TraesCS4D01G204400 chr2D 95.804 429 18 0 2425 2853 249398374 249398802 0.000000e+00 693
24 TraesCS4D01G204400 chr7A 95.592 431 18 1 2425 2855 115278825 115278396 0.000000e+00 689
25 TraesCS4D01G204400 chr7D 97.778 90 2 0 2853 2942 635240863 635240952 3.930000e-34 156
26 TraesCS4D01G204400 chr4B 97.778 90 2 0 2853 2942 97821836 97821925 3.930000e-34 156
27 TraesCS4D01G204400 chr3D 97.778 90 2 0 2853 2942 210563471 210563382 3.930000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G204400 chr4D 351752186 351755127 2941 True 5433.0 5433 100.0000 1 2942 1 chr4D.!!$R1 2941
1 TraesCS4D01G204400 chr5D 337719086 337721513 2427 False 3995.0 3995 96.3760 1 2426 1 chr5D.!!$F1 2425
2 TraesCS4D01G204400 chr5D 242125874 242128757 2883 True 2366.0 4028 96.4470 1 2853 2 chr5D.!!$R3 2852
3 TraesCS4D01G204400 chr5D 254515901 254518785 2884 False 2362.5 4021 96.4295 1 2853 2 chr5D.!!$F2 2852
4 TraesCS4D01G204400 chr5D 292021560 292024443 2883 True 2327.5 3956 96.0620 1 2853 2 chr5D.!!$R4 2852
5 TraesCS4D01G204400 chr5D 220436998 220439880 2882 True 2274.0 3849 95.6700 1 2853 2 chr5D.!!$R2 2852
6 TraesCS4D01G204400 chr6D 451809953 451812379 2426 False 3988.0 3988 96.3340 1 2426 1 chr6D.!!$F2 2425
7 TraesCS4D01G204400 chrUn 94201935 94204821 2886 False 2325.5 3936 96.3330 1 2853 2 chrUn.!!$F1 2852
8 TraesCS4D01G204400 chr1A 99179200 99181609 2409 True 3784.0 3784 95.0210 19 2426 1 chr1A.!!$R1 2407
9 TraesCS4D01G204400 chr2A 290197956 290200386 2430 True 3493.0 3493 92.6370 1 2426 1 chr2A.!!$R1 2425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.670546 CTGAAGGGTGACGCGAACAT 60.671 55.000 15.93 0.24 0.00 2.71 F
1590 1595 1.001020 CCACATGGTTAGCTGGCCA 60.001 57.895 4.71 4.71 39.33 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1815 0.105039 GAGGTTCCGATGCGAAGGAT 59.895 55.0 0.00 0.0 45.36 3.24 R
2914 2957 0.039618 GGGGCCTTGAGACATTCCAA 59.960 55.0 0.84 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.955905 GGCTCTCTCGGTATGACCTC 59.044 60.000 0.00 0.00 35.66 3.85
103 104 2.052104 CGGGGTTCCCAGAAATGGC 61.052 63.158 10.25 0.00 45.83 4.40
114 115 1.005215 CAGAAATGGCTCCTGAAGGGT 59.995 52.381 0.00 0.00 36.25 4.34
125 126 0.670546 CTGAAGGGTGACGCGAACAT 60.671 55.000 15.93 0.24 0.00 2.71
158 159 2.126596 CCATAGCAAATGGCCGCCA 61.127 57.895 16.17 16.17 46.50 5.69
210 211 1.228894 TCCGTCCCTTCTGCAGTCT 60.229 57.895 14.67 0.00 0.00 3.24
471 472 3.136443 TCTGGAATGTGATTAAGCCGGAT 59.864 43.478 5.05 0.00 0.00 4.18
516 517 1.295423 CGTTGGGACCATCGACCTT 59.705 57.895 14.85 0.00 40.37 3.50
686 687 1.636519 CATTACCCACCCCAACCAGTA 59.363 52.381 0.00 0.00 0.00 2.74
822 823 2.288640 GGCCTACGACACTGTTAGTTGT 60.289 50.000 0.00 0.00 37.39 3.32
902 903 2.265739 GCAGATGGTGTCCTGCGA 59.734 61.111 0.00 0.00 44.99 5.10
944 945 3.788116 TGGGGAGATTGGTCCTTACTA 57.212 47.619 0.00 0.00 36.75 1.82
972 973 1.978580 CTCTGTGGGGTTAGACAAGGT 59.021 52.381 0.00 0.00 0.00 3.50
1155 1160 2.264794 GGCTCGGACACGGACATT 59.735 61.111 0.00 0.00 41.39 2.71
1167 1172 2.159627 CACGGACATTGCTAACCTCAAC 59.840 50.000 0.00 0.00 0.00 3.18
1169 1174 2.673368 CGGACATTGCTAACCTCAACTC 59.327 50.000 0.00 0.00 0.00 3.01
1230 1235 5.447624 TCAACTTCGACAAGAGTGATGTA 57.552 39.130 0.00 0.00 33.34 2.29
1429 1434 2.985847 GGCTGTCAAAGGCGGCTT 60.986 61.111 19.90 19.90 42.32 4.35
1519 1524 2.768527 GAGACCCTTCACCATGAGATCA 59.231 50.000 0.00 0.00 0.00 2.92
1550 1555 1.004918 CTCGTTTCTTCTGGGCGGT 60.005 57.895 0.00 0.00 0.00 5.68
1564 1569 1.201414 GGGCGGTTGACAACAATAAGG 59.799 52.381 19.58 3.17 38.32 2.69
1570 1575 5.506649 GCGGTTGACAACAATAAGGAGAAAA 60.507 40.000 19.58 0.00 38.32 2.29
1590 1595 1.001020 CCACATGGTTAGCTGGCCA 60.001 57.895 4.71 4.71 39.33 5.36
1794 1800 1.889829 CCCAGTTTTGGCAATCGGTTA 59.110 47.619 0.00 0.00 43.58 2.85
1807 1813 3.914426 ATCGGTTATCCAACTGCTTCT 57.086 42.857 0.00 0.00 40.33 2.85
1809 1815 2.565391 TCGGTTATCCAACTGCTTCTCA 59.435 45.455 0.00 0.00 40.33 3.27
1910 1916 4.589675 TTTGCGGCCCGTTTCCCT 62.590 61.111 4.45 0.00 0.00 4.20
2099 2106 1.595929 GGTTCGGTGGCGTCTTGAA 60.596 57.895 0.00 0.00 0.00 2.69
2184 2195 1.606313 CCCTGCGGTTTGGTCCATT 60.606 57.895 0.00 0.00 0.00 3.16
2200 2211 2.496871 TCCATTCGCTTGCCATTGAAAT 59.503 40.909 0.00 0.00 0.00 2.17
2467 2509 1.727335 GTTCTAGCGTGGACTCTTTGC 59.273 52.381 0.00 0.00 0.00 3.68
2486 2528 2.161410 TGCACGATTCGCAATAAGCTTT 59.839 40.909 3.20 0.00 42.61 3.51
2519 2561 0.543277 TCCTCTTCGACGGGCTACTA 59.457 55.000 0.00 0.00 0.00 1.82
2531 2573 2.025898 GGGCTACTAACGCTCTCTTCT 58.974 52.381 0.00 0.00 0.00 2.85
2881 2924 3.030668 CATTTCTGCAAACTGGGGTTC 57.969 47.619 0.00 0.00 34.14 3.62
2882 2925 2.452600 TTTCTGCAAACTGGGGTTCT 57.547 45.000 0.00 0.00 34.14 3.01
2883 2926 2.452600 TTCTGCAAACTGGGGTTCTT 57.547 45.000 0.00 0.00 34.14 2.52
2884 2927 3.586470 TTCTGCAAACTGGGGTTCTTA 57.414 42.857 0.00 0.00 34.14 2.10
2885 2928 3.586470 TCTGCAAACTGGGGTTCTTAA 57.414 42.857 0.00 0.00 34.14 1.85
2886 2929 4.112634 TCTGCAAACTGGGGTTCTTAAT 57.887 40.909 0.00 0.00 34.14 1.40
2887 2930 4.479158 TCTGCAAACTGGGGTTCTTAATT 58.521 39.130 0.00 0.00 34.14 1.40
2888 2931 4.898861 TCTGCAAACTGGGGTTCTTAATTT 59.101 37.500 0.00 0.00 34.14 1.82
2889 2932 5.365314 TCTGCAAACTGGGGTTCTTAATTTT 59.635 36.000 0.00 0.00 34.14 1.82
2890 2933 6.551601 TCTGCAAACTGGGGTTCTTAATTTTA 59.448 34.615 0.00 0.00 34.14 1.52
2891 2934 6.754193 TGCAAACTGGGGTTCTTAATTTTAG 58.246 36.000 0.00 0.00 34.14 1.85
2892 2935 6.325286 TGCAAACTGGGGTTCTTAATTTTAGT 59.675 34.615 0.00 0.00 34.14 2.24
2893 2936 7.147637 TGCAAACTGGGGTTCTTAATTTTAGTT 60.148 33.333 0.00 0.00 34.14 2.24
2894 2937 7.170828 GCAAACTGGGGTTCTTAATTTTAGTTG 59.829 37.037 0.00 0.00 34.14 3.16
2895 2938 8.417884 CAAACTGGGGTTCTTAATTTTAGTTGA 58.582 33.333 0.00 0.00 34.14 3.18
2896 2939 8.721133 AACTGGGGTTCTTAATTTTAGTTGAT 57.279 30.769 0.00 0.00 0.00 2.57
2897 2940 8.349568 ACTGGGGTTCTTAATTTTAGTTGATC 57.650 34.615 0.00 0.00 0.00 2.92
2898 2941 8.170730 ACTGGGGTTCTTAATTTTAGTTGATCT 58.829 33.333 0.00 0.00 0.00 2.75
2899 2942 8.348285 TGGGGTTCTTAATTTTAGTTGATCTG 57.652 34.615 0.00 0.00 0.00 2.90
2900 2943 7.093945 TGGGGTTCTTAATTTTAGTTGATCTGC 60.094 37.037 0.00 0.00 0.00 4.26
2901 2944 7.093945 GGGGTTCTTAATTTTAGTTGATCTGCA 60.094 37.037 0.00 0.00 0.00 4.41
2902 2945 7.755373 GGGTTCTTAATTTTAGTTGATCTGCAC 59.245 37.037 0.00 0.00 0.00 4.57
2903 2946 8.296713 GGTTCTTAATTTTAGTTGATCTGCACA 58.703 33.333 0.00 0.00 0.00 4.57
2904 2947 9.677567 GTTCTTAATTTTAGTTGATCTGCACAA 57.322 29.630 0.00 0.00 0.00 3.33
2912 2955 9.897744 TTTTAGTTGATCTGCACAAAAATAGAG 57.102 29.630 0.00 0.00 0.00 2.43
2913 2956 8.846943 TTAGTTGATCTGCACAAAAATAGAGA 57.153 30.769 0.00 0.00 0.00 3.10
2914 2957 7.934855 AGTTGATCTGCACAAAAATAGAGAT 57.065 32.000 0.00 0.00 0.00 2.75
2915 2958 8.345724 AGTTGATCTGCACAAAAATAGAGATT 57.654 30.769 0.00 0.00 0.00 2.40
2916 2959 8.242053 AGTTGATCTGCACAAAAATAGAGATTG 58.758 33.333 0.00 0.00 0.00 2.67
2917 2960 7.092137 TGATCTGCACAAAAATAGAGATTGG 57.908 36.000 0.00 0.00 0.00 3.16
2918 2961 6.885918 TGATCTGCACAAAAATAGAGATTGGA 59.114 34.615 0.00 0.00 0.00 3.53
2919 2962 7.394077 TGATCTGCACAAAAATAGAGATTGGAA 59.606 33.333 0.00 0.00 0.00 3.53
2920 2963 7.707624 TCTGCACAAAAATAGAGATTGGAAT 57.292 32.000 0.00 0.00 0.00 3.01
2921 2964 7.541162 TCTGCACAAAAATAGAGATTGGAATG 58.459 34.615 0.00 0.00 0.00 2.67
2922 2965 7.177216 TCTGCACAAAAATAGAGATTGGAATGT 59.823 33.333 0.00 0.00 0.00 2.71
2923 2966 7.315142 TGCACAAAAATAGAGATTGGAATGTC 58.685 34.615 0.00 0.00 0.00 3.06
2924 2967 7.177216 TGCACAAAAATAGAGATTGGAATGTCT 59.823 33.333 4.60 4.60 41.36 3.41
2925 2968 7.699812 GCACAAAAATAGAGATTGGAATGTCTC 59.300 37.037 2.48 0.00 39.46 3.36
2926 2969 8.733458 CACAAAAATAGAGATTGGAATGTCTCA 58.267 33.333 2.48 0.00 42.57 3.27
2927 2970 9.300681 ACAAAAATAGAGATTGGAATGTCTCAA 57.699 29.630 2.48 0.00 42.57 3.02
2928 2971 9.784680 CAAAAATAGAGATTGGAATGTCTCAAG 57.215 33.333 2.48 0.00 42.57 3.02
2929 2972 8.517062 AAAATAGAGATTGGAATGTCTCAAGG 57.483 34.615 2.48 0.00 42.57 3.61
2930 2973 3.883669 AGAGATTGGAATGTCTCAAGGC 58.116 45.455 5.32 0.00 42.57 4.35
2931 2974 2.948315 GAGATTGGAATGTCTCAAGGCC 59.052 50.000 0.00 0.00 40.41 5.19
2932 2975 2.027385 GATTGGAATGTCTCAAGGCCC 58.973 52.381 0.00 0.00 0.00 5.80
2933 2976 0.039618 TTGGAATGTCTCAAGGCCCC 59.960 55.000 0.00 0.00 0.00 5.80
2934 2977 0.846427 TGGAATGTCTCAAGGCCCCT 60.846 55.000 0.00 0.00 0.00 4.79
2935 2978 0.106967 GGAATGTCTCAAGGCCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
2936 2979 0.106967 GAATGTCTCAAGGCCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.131933 AGATGATGGAGAGTTGGTCTTCG 59.868 47.826 0.00 0.00 34.71 3.79
103 104 2.125912 CGCGTCACCCTTCAGGAG 60.126 66.667 0.00 0.00 39.89 3.69
114 115 1.447140 GTAGGCCATGTTCGCGTCA 60.447 57.895 5.01 7.65 0.00 4.35
158 159 0.180406 GGGGATGGTGTTGCGTCTAT 59.820 55.000 0.00 0.00 0.00 1.98
210 211 1.389609 GGGTCCTAATGTCGCTCGGA 61.390 60.000 0.00 0.00 0.00 4.55
254 255 2.693074 CTCCTAGGAGAGGCAGAGAAAC 59.307 54.545 31.97 0.00 46.25 2.78
471 472 3.134623 ACTCGTCAAAGATGGCCATGATA 59.865 43.478 26.56 7.38 0.00 2.15
516 517 0.616395 TCCCATAGTTGAGGCGACCA 60.616 55.000 0.00 0.00 0.00 4.02
910 911 0.988063 TCCCCATTGATGTTCACGGA 59.012 50.000 0.00 0.00 0.00 4.69
972 973 2.497675 CAGGAACGGAGAGAAAGGATCA 59.502 50.000 0.00 0.00 0.00 2.92
1155 1160 2.621070 AGAAGGGAGTTGAGGTTAGCA 58.379 47.619 0.00 0.00 0.00 3.49
1167 1172 1.905215 TGGAAGCAGAGAAGAAGGGAG 59.095 52.381 0.00 0.00 0.00 4.30
1169 1174 2.224621 TGTTGGAAGCAGAGAAGAAGGG 60.225 50.000 0.00 0.00 0.00 3.95
1230 1235 2.368875 CGGAGAGTAGCCCATAACCATT 59.631 50.000 0.00 0.00 0.00 3.16
1429 1434 4.040461 GGAGGAATTAATGAGGATCGTCCA 59.960 45.833 15.93 2.02 42.03 4.02
1519 1524 7.141363 CAGAAGAAACGAGATTGAATTTTGGT 58.859 34.615 0.00 0.00 0.00 3.67
1550 1555 7.093727 TGTGGTTTTTCTCCTTATTGTTGTCAA 60.094 33.333 0.00 0.00 37.98 3.18
1590 1595 2.249413 CTCGGGGCTTGCAGATGTCT 62.249 60.000 0.00 0.00 0.00 3.41
1694 1700 1.053835 TGTCAAGCCAGAGACCACCA 61.054 55.000 0.00 0.00 33.89 4.17
1748 1754 1.373570 CGGATCTCTGACAAAAGGCC 58.626 55.000 0.00 0.00 0.00 5.19
1794 1800 3.681034 CGAAGGATGAGAAGCAGTTGGAT 60.681 47.826 0.00 0.00 0.00 3.41
1807 1813 0.179084 GGTTCCGATGCGAAGGATGA 60.179 55.000 0.00 0.00 40.04 2.92
1809 1815 0.105039 GAGGTTCCGATGCGAAGGAT 59.895 55.000 0.00 0.00 45.36 3.24
1881 1887 2.125512 CGCAAAGGGGGAGTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
1910 1916 3.554960 CGACAACAATGGAGAAGAGGTCA 60.555 47.826 0.00 0.00 0.00 4.02
2079 2086 1.597027 CAAGACGCCACCGAACCTT 60.597 57.895 0.00 0.00 38.29 3.50
2184 2195 2.594321 CGAAATTTCAATGGCAAGCGA 58.406 42.857 17.99 0.00 0.00 4.93
2200 2211 4.037803 CCATTGCCACATGAATATCCGAAA 59.962 41.667 0.00 0.00 0.00 3.46
2240 2251 2.203938 GGACCTCCACCCCAGACA 60.204 66.667 0.00 0.00 35.64 3.41
2421 2432 2.176045 TCTCGAGCCACCTAATGTTCA 58.824 47.619 7.81 0.00 0.00 3.18
2486 2528 3.490933 CGAAGAGGAATACGCTGGATCAA 60.491 47.826 0.00 0.00 0.00 2.57
2519 2561 3.057174 CCAGACAGTTAGAAGAGAGCGTT 60.057 47.826 0.00 0.00 0.00 4.84
2531 2573 3.071023 AGCTGCAAGTAACCAGACAGTTA 59.929 43.478 1.02 0.00 35.30 2.24
2589 2631 1.521457 GCGATGAAGGCGGTGATGA 60.521 57.895 0.00 0.00 0.00 2.92
2667 2709 0.178068 GAGGCAAGGCGTCTAATCCA 59.822 55.000 0.00 0.00 39.86 3.41
2854 2897 3.676646 CCAGTTTGCAGAAATGCTTAAGC 59.323 43.478 20.84 20.84 42.50 3.09
2855 2898 4.240096 CCCAGTTTGCAGAAATGCTTAAG 58.760 43.478 0.00 0.00 35.49 1.85
2856 2899 3.006752 CCCCAGTTTGCAGAAATGCTTAA 59.993 43.478 1.53 0.00 35.49 1.85
2857 2900 2.562298 CCCCAGTTTGCAGAAATGCTTA 59.438 45.455 1.53 0.00 35.49 3.09
2858 2901 1.345415 CCCCAGTTTGCAGAAATGCTT 59.655 47.619 1.53 0.00 35.49 3.91
2859 2902 0.971386 CCCCAGTTTGCAGAAATGCT 59.029 50.000 1.53 0.00 35.49 3.79
2860 2903 0.681175 ACCCCAGTTTGCAGAAATGC 59.319 50.000 4.30 0.00 0.00 3.56
2861 2904 2.629617 AGAACCCCAGTTTGCAGAAATG 59.370 45.455 0.00 0.00 35.94 2.32
2862 2905 2.962859 AGAACCCCAGTTTGCAGAAAT 58.037 42.857 0.00 0.00 35.94 2.17
2863 2906 2.452600 AGAACCCCAGTTTGCAGAAA 57.547 45.000 0.00 0.00 35.94 2.52
2864 2907 2.452600 AAGAACCCCAGTTTGCAGAA 57.547 45.000 0.00 0.00 35.94 3.02
2865 2908 3.586470 TTAAGAACCCCAGTTTGCAGA 57.414 42.857 0.00 0.00 35.94 4.26
2866 2909 4.871933 AATTAAGAACCCCAGTTTGCAG 57.128 40.909 0.00 0.00 35.94 4.41
2867 2910 5.622346 AAAATTAAGAACCCCAGTTTGCA 57.378 34.783 0.00 0.00 35.94 4.08
2868 2911 6.755206 ACTAAAATTAAGAACCCCAGTTTGC 58.245 36.000 0.00 0.00 35.94 3.68
2869 2912 8.417884 TCAACTAAAATTAAGAACCCCAGTTTG 58.582 33.333 0.00 0.00 35.94 2.93
2870 2913 8.541899 TCAACTAAAATTAAGAACCCCAGTTT 57.458 30.769 0.00 0.00 35.94 2.66
2871 2914 8.721133 ATCAACTAAAATTAAGAACCCCAGTT 57.279 30.769 0.00 0.00 39.54 3.16
2872 2915 8.170730 AGATCAACTAAAATTAAGAACCCCAGT 58.829 33.333 0.00 0.00 0.00 4.00
2873 2916 8.462016 CAGATCAACTAAAATTAAGAACCCCAG 58.538 37.037 0.00 0.00 0.00 4.45
2874 2917 7.093945 GCAGATCAACTAAAATTAAGAACCCCA 60.094 37.037 0.00 0.00 0.00 4.96
2875 2918 7.093945 TGCAGATCAACTAAAATTAAGAACCCC 60.094 37.037 0.00 0.00 0.00 4.95
2876 2919 7.755373 GTGCAGATCAACTAAAATTAAGAACCC 59.245 37.037 0.00 0.00 0.00 4.11
2877 2920 8.296713 TGTGCAGATCAACTAAAATTAAGAACC 58.703 33.333 0.00 0.00 0.00 3.62
2878 2921 9.677567 TTGTGCAGATCAACTAAAATTAAGAAC 57.322 29.630 0.00 0.00 0.00 3.01
2886 2929 9.897744 CTCTATTTTTGTGCAGATCAACTAAAA 57.102 29.630 13.50 13.50 0.00 1.52
2887 2930 9.283768 TCTCTATTTTTGTGCAGATCAACTAAA 57.716 29.630 0.00 0.00 0.00 1.85
2888 2931 8.846943 TCTCTATTTTTGTGCAGATCAACTAA 57.153 30.769 0.00 0.00 0.00 2.24
2889 2932 9.453572 AATCTCTATTTTTGTGCAGATCAACTA 57.546 29.630 0.00 0.00 0.00 2.24
2890 2933 7.934855 ATCTCTATTTTTGTGCAGATCAACT 57.065 32.000 0.00 0.00 0.00 3.16
2891 2934 7.487189 CCAATCTCTATTTTTGTGCAGATCAAC 59.513 37.037 0.00 0.00 0.00 3.18
2892 2935 7.394077 TCCAATCTCTATTTTTGTGCAGATCAA 59.606 33.333 0.00 0.00 0.00 2.57
2893 2936 6.885918 TCCAATCTCTATTTTTGTGCAGATCA 59.114 34.615 0.00 0.00 0.00 2.92
2894 2937 7.325660 TCCAATCTCTATTTTTGTGCAGATC 57.674 36.000 0.00 0.00 0.00 2.75
2895 2938 7.707624 TTCCAATCTCTATTTTTGTGCAGAT 57.292 32.000 0.00 0.00 0.00 2.90
2896 2939 7.177216 ACATTCCAATCTCTATTTTTGTGCAGA 59.823 33.333 0.00 0.00 0.00 4.26
2897 2940 7.318141 ACATTCCAATCTCTATTTTTGTGCAG 58.682 34.615 0.00 0.00 0.00 4.41
2898 2941 7.177216 AGACATTCCAATCTCTATTTTTGTGCA 59.823 33.333 0.00 0.00 0.00 4.57
2899 2942 7.542025 AGACATTCCAATCTCTATTTTTGTGC 58.458 34.615 0.00 0.00 0.00 4.57
2900 2943 8.733458 TGAGACATTCCAATCTCTATTTTTGTG 58.267 33.333 3.17 0.00 41.69 3.33
2901 2944 8.868522 TGAGACATTCCAATCTCTATTTTTGT 57.131 30.769 3.17 0.00 41.69 2.83
2902 2945 9.784680 CTTGAGACATTCCAATCTCTATTTTTG 57.215 33.333 3.17 0.00 41.69 2.44
2903 2946 8.964772 CCTTGAGACATTCCAATCTCTATTTTT 58.035 33.333 3.17 0.00 41.69 1.94
2904 2947 7.067981 GCCTTGAGACATTCCAATCTCTATTTT 59.932 37.037 3.17 0.00 41.69 1.82
2905 2948 6.545298 GCCTTGAGACATTCCAATCTCTATTT 59.455 38.462 3.17 0.00 41.69 1.40
2906 2949 6.060788 GCCTTGAGACATTCCAATCTCTATT 58.939 40.000 3.17 0.00 41.69 1.73
2907 2950 5.455899 GGCCTTGAGACATTCCAATCTCTAT 60.456 44.000 0.00 0.00 41.69 1.98
2908 2951 4.141620 GGCCTTGAGACATTCCAATCTCTA 60.142 45.833 0.00 0.00 41.69 2.43
2909 2952 3.371380 GGCCTTGAGACATTCCAATCTCT 60.371 47.826 0.00 0.00 41.69 3.10
2910 2953 2.948315 GGCCTTGAGACATTCCAATCTC 59.052 50.000 0.00 0.00 41.54 2.75
2911 2954 2.357569 GGGCCTTGAGACATTCCAATCT 60.358 50.000 0.84 0.00 0.00 2.40
2912 2955 2.027385 GGGCCTTGAGACATTCCAATC 58.973 52.381 0.84 0.00 0.00 2.67
2913 2956 1.342374 GGGGCCTTGAGACATTCCAAT 60.342 52.381 0.84 0.00 0.00 3.16
2914 2957 0.039618 GGGGCCTTGAGACATTCCAA 59.960 55.000 0.84 0.00 0.00 3.53
2915 2958 0.846427 AGGGGCCTTGAGACATTCCA 60.846 55.000 0.84 0.00 0.00 3.53
2916 2959 0.106967 GAGGGGCCTTGAGACATTCC 60.107 60.000 0.84 0.00 0.00 3.01
2917 2960 0.106967 GGAGGGGCCTTGAGACATTC 60.107 60.000 0.84 0.00 0.00 2.67
2918 2961 2.002625 GGAGGGGCCTTGAGACATT 58.997 57.895 0.84 0.00 0.00 2.71
2919 2962 3.746957 GGAGGGGCCTTGAGACAT 58.253 61.111 0.84 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.