Multiple sequence alignment - TraesCS4D01G204200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G204200 chr4D 100.000 7265 0 0 1 7265 351668115 351660851 0.000000e+00 13417.0
1 TraesCS4D01G204200 chr4D 96.945 851 24 2 1 850 119824642 119825491 0.000000e+00 1426.0
2 TraesCS4D01G204200 chr4A 95.456 3279 133 10 3364 6639 113604455 113607720 0.000000e+00 5216.0
3 TraesCS4D01G204200 chr4A 95.787 1258 47 4 2111 3364 113602281 113603536 0.000000e+00 2025.0
4 TraesCS4D01G204200 chr4A 93.614 830 28 10 848 1653 113600848 113601676 0.000000e+00 1216.0
5 TraesCS4D01G204200 chr4A 96.657 329 10 1 1799 2127 113601937 113602264 4.960000e-151 545.0
6 TraesCS4D01G204200 chr4A 94.915 59 2 1 1642 1700 113601848 113601905 2.790000e-14 91.6
7 TraesCS4D01G204200 chr4B 94.152 3300 162 18 3364 6649 434594609 434591327 0.000000e+00 4996.0
8 TraesCS4D01G204200 chr4B 96.527 2534 62 5 851 3360 434598062 434595531 0.000000e+00 4169.0
9 TraesCS4D01G204200 chr3D 97.307 854 20 3 1 853 547629651 547628800 0.000000e+00 1447.0
10 TraesCS4D01G204200 chr3D 97.429 739 15 4 1 737 433967127 433966391 0.000000e+00 1256.0
11 TraesCS4D01G204200 chr3D 87.652 494 52 9 6777 7265 549051472 549050983 3.800000e-157 566.0
12 TraesCS4D01G204200 chr5D 96.710 851 26 2 1 850 173679131 173678282 0.000000e+00 1415.0
13 TraesCS4D01G204200 chr5D 96.883 738 17 5 1 734 7472682 7471947 0.000000e+00 1230.0
14 TraesCS4D01G204200 chr5D 87.591 137 10 3 6647 6778 480383948 480383814 1.260000e-32 152.0
15 TraesCS4D01G204200 chr1D 96.479 852 27 3 1 850 41436773 41437623 0.000000e+00 1404.0
16 TraesCS4D01G204200 chr1D 96.883 738 18 4 1 734 460760335 460759599 0.000000e+00 1230.0
17 TraesCS4D01G204200 chr1D 86.895 496 57 6 6775 7265 216403786 216403294 3.830000e-152 549.0
18 TraesCS4D01G204200 chr7D 97.294 739 17 3 1 737 264075554 264074817 0.000000e+00 1251.0
19 TraesCS4D01G204200 chr7D 86.600 500 56 7 6774 7265 503936610 503936114 6.410000e-150 542.0
20 TraesCS4D01G204200 chr2D 96.888 739 17 5 1 734 15834427 15833690 0.000000e+00 1232.0
21 TraesCS4D01G204200 chr2D 85.830 494 59 11 6777 7265 6301499 6301012 1.400000e-141 514.0
22 TraesCS4D01G204200 chr2D 84.459 148 9 8 6645 6778 284573868 284573721 4.570000e-27 134.0
23 TraesCS4D01G204200 chr1A 87.149 498 55 7 6774 7265 22644660 22645154 2.290000e-154 556.0
24 TraesCS4D01G204200 chr2B 87.174 499 51 11 6777 7265 718216377 718215882 8.230000e-154 555.0
25 TraesCS4D01G204200 chr2B 85.341 498 58 9 6777 7260 695987294 695986798 1.090000e-137 501.0
26 TraesCS4D01G204200 chr7B 86.056 502 62 8 6769 7265 26283337 26282839 3.860000e-147 532.0
27 TraesCS4D01G204200 chr7B 84.970 499 67 7 6774 7265 113144407 113144904 3.910000e-137 499.0
28 TraesCS4D01G204200 chr5B 84.328 134 16 2 6647 6775 353014814 353014947 7.650000e-25 126.0
29 TraesCS4D01G204200 chr6B 83.871 93 6 7 6647 6730 159313803 159313895 6.040000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G204200 chr4D 351660851 351668115 7264 True 13417.00 13417 100.0000 1 7265 1 chr4D.!!$R1 7264
1 TraesCS4D01G204200 chr4D 119824642 119825491 849 False 1426.00 1426 96.9450 1 850 1 chr4D.!!$F1 849
2 TraesCS4D01G204200 chr4A 113600848 113607720 6872 False 1818.72 5216 95.2858 848 6639 5 chr4A.!!$F1 5791
3 TraesCS4D01G204200 chr4B 434591327 434598062 6735 True 4582.50 4996 95.3395 851 6649 2 chr4B.!!$R1 5798
4 TraesCS4D01G204200 chr3D 547628800 547629651 851 True 1447.00 1447 97.3070 1 853 1 chr3D.!!$R2 852
5 TraesCS4D01G204200 chr3D 433966391 433967127 736 True 1256.00 1256 97.4290 1 737 1 chr3D.!!$R1 736
6 TraesCS4D01G204200 chr5D 173678282 173679131 849 True 1415.00 1415 96.7100 1 850 1 chr5D.!!$R2 849
7 TraesCS4D01G204200 chr5D 7471947 7472682 735 True 1230.00 1230 96.8830 1 734 1 chr5D.!!$R1 733
8 TraesCS4D01G204200 chr1D 41436773 41437623 850 False 1404.00 1404 96.4790 1 850 1 chr1D.!!$F1 849
9 TraesCS4D01G204200 chr1D 460759599 460760335 736 True 1230.00 1230 96.8830 1 734 1 chr1D.!!$R2 733
10 TraesCS4D01G204200 chr7D 264074817 264075554 737 True 1251.00 1251 97.2940 1 737 1 chr7D.!!$R1 736
11 TraesCS4D01G204200 chr2D 15833690 15834427 737 True 1232.00 1232 96.8880 1 734 1 chr2D.!!$R2 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 944 2.093537 GAGCCGAATCCCGCAGAGAT 62.094 60.000 0.00 0.00 36.84 2.75 F
1286 1299 1.137872 CCAAGTAGCAGCCTAGGACTG 59.862 57.143 21.94 21.94 38.22 3.51 F
1834 2053 2.039613 TGGTTGTGTGCATGTGAGGATA 59.960 45.455 0.00 0.00 0.00 2.59 F
2809 3063 0.621082 TGGGACGCATGGGTTAATCA 59.379 50.000 17.36 9.96 0.00 2.57 F
3807 4983 0.179250 CGGTCGATTTGTGAACAGCG 60.179 55.000 0.00 0.00 0.00 5.18 F
4004 5180 1.405105 TCGCAAAGGCCAAAGATATGC 59.595 47.619 5.01 3.39 36.38 3.14 F
5291 6470 1.714414 CTCGACCTACCGTGACGAG 59.286 63.158 6.54 0.00 42.77 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 2434 0.036010 GGCATGACACCAGCACTAGT 60.036 55.000 0.00 0.00 0.00 2.57 R
2660 2911 2.067365 GGTTCAACCTCCCACACTTT 57.933 50.000 0.00 0.00 34.73 2.66 R
3788 4964 0.179250 CGCTGTTCACAAATCGACCG 60.179 55.000 0.00 0.00 0.00 4.79 R
4489 5666 1.135139 AGCCTAGACGCATGTGTACTG 59.865 52.381 12.82 5.06 0.00 2.74 R
5291 6470 1.745653 GAAGGACCTGCATTACAAGGC 59.254 52.381 0.00 0.00 36.03 4.35 R
5403 6582 2.484062 GGCATGGAACCCTGCATCG 61.484 63.158 19.24 0.00 40.18 3.84 R
6950 8141 0.027586 GTTTCGACCCGCATATGCAC 59.972 55.000 26.52 11.17 42.21 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 129 9.017509 CATATTTTGATAGGATAGTTGCATGGT 57.982 33.333 0.00 0.00 0.00 3.55
235 239 7.637631 TGGTTTGCTTAGACATTATGCATTA 57.362 32.000 3.54 0.00 33.50 1.90
334 338 8.177119 TGTTAGGACAGTTGCTTGATTTATTT 57.823 30.769 0.00 0.00 0.00 1.40
653 661 6.612306 ACTCGAATCAAAAGTTATGGCTTTC 58.388 36.000 0.00 0.00 37.68 2.62
731 740 2.449031 ATCACGCGGGAACAGCAGAA 62.449 55.000 18.36 0.00 34.19 3.02
929 942 2.279784 GAGCCGAATCCCGCAGAG 60.280 66.667 0.00 0.00 36.84 3.35
931 944 2.093537 GAGCCGAATCCCGCAGAGAT 62.094 60.000 0.00 0.00 36.84 2.75
969 982 3.411517 CCGCCCCCAGATCCAAGT 61.412 66.667 0.00 0.00 0.00 3.16
1156 1169 3.057548 CCTGCAGCATCAACGGCA 61.058 61.111 8.66 0.00 38.45 5.69
1286 1299 1.137872 CCAAGTAGCAGCCTAGGACTG 59.862 57.143 21.94 21.94 38.22 3.51
1333 1346 5.104360 TGGGAATGCTAGCTTTTATCTCTGT 60.104 40.000 17.23 0.00 0.00 3.41
1421 1454 3.134262 ACATCTCCATGGTGTCTCTGATG 59.866 47.826 12.58 15.36 36.92 3.07
1550 1583 4.645535 TGAACAGTCTATTCAAGCAAGCT 58.354 39.130 0.00 0.00 33.16 3.74
1573 1606 5.406649 TGACAAAACATTCACCTTTGACAC 58.593 37.500 1.08 0.00 32.49 3.67
1738 1954 7.331193 GCTAAATACTCCTACATGGTTATTCCG 59.669 40.741 0.00 0.00 39.52 4.30
1766 1982 9.419297 TGTTGTATACTTCATGTACTCTGTTTC 57.581 33.333 4.17 0.00 33.45 2.78
1834 2053 2.039613 TGGTTGTGTGCATGTGAGGATA 59.960 45.455 0.00 0.00 0.00 2.59
1940 2159 9.796180 TGTACAGTTGTTATTTTATACCAGGTT 57.204 29.630 0.00 0.00 0.00 3.50
2242 2493 6.998968 ATTTTTGACATTTTGGAAGCACAA 57.001 29.167 0.00 0.00 0.00 3.33
2334 2585 4.689062 TCAGAGGACCAAAGTAGATTCCT 58.311 43.478 0.00 0.00 39.51 3.36
2360 2611 5.346181 AGATAGACACAAAAGGCCTACTC 57.654 43.478 5.16 0.00 0.00 2.59
2650 2901 5.008217 TCAAAGTAACAACAACAGGGAATCG 59.992 40.000 0.00 0.00 0.00 3.34
2660 2911 2.759355 ACAGGGAATCGGGAACTCATA 58.241 47.619 0.00 0.00 0.00 2.15
2663 2914 4.130118 CAGGGAATCGGGAACTCATAAAG 58.870 47.826 0.00 0.00 0.00 1.85
2809 3063 0.621082 TGGGACGCATGGGTTAATCA 59.379 50.000 17.36 9.96 0.00 2.57
2896 3150 5.048083 TGCTGTCCCATTTGAATAGTTGTTC 60.048 40.000 0.00 0.00 0.00 3.18
2944 3198 8.373220 GGTATGTTGTAGGCCTTATACATAACT 58.627 37.037 26.05 12.32 33.36 2.24
2974 3228 5.624159 TCTCCAAAGCAATTTCTTCTCAGA 58.376 37.500 0.00 0.00 0.00 3.27
3013 3268 6.762187 TGTTCTTGGTAAAGTGACAACGAATA 59.238 34.615 0.00 0.00 34.78 1.75
3058 3313 9.197306 TGTCATAACTGGATATTACTACACACT 57.803 33.333 0.00 0.00 0.00 3.55
3432 4607 4.638421 TCAAATTTACTCCATGCCGGTAAG 59.362 41.667 1.90 0.00 35.57 2.34
3449 4624 7.279313 TGCCGGTAAGTATTTCTTGATCTTAAC 59.721 37.037 1.90 0.00 37.56 2.01
3610 4785 9.522804 CAGAATAAACTAGGTAAACAGCTAGAG 57.477 37.037 15.65 0.00 0.00 2.43
3615 4790 1.205055 GGTAAACAGCTAGAGCCCCT 58.795 55.000 0.00 0.00 43.38 4.79
3618 4793 1.199615 AAACAGCTAGAGCCCCTCTC 58.800 55.000 0.00 0.00 40.34 3.20
3749 4925 5.938322 TGCTATTCAATTTTCGGTCTCAAC 58.062 37.500 0.00 0.00 0.00 3.18
3751 4927 6.876789 TGCTATTCAATTTTCGGTCTCAACTA 59.123 34.615 0.00 0.00 0.00 2.24
3774 4950 3.924918 TCAGAGTCTTGGACTTCTTCG 57.075 47.619 1.62 0.00 43.53 3.79
3788 4964 5.276726 GGACTTCTTCGTAACACAGTTGTTC 60.277 44.000 0.00 0.00 42.67 3.18
3807 4983 0.179250 CGGTCGATTTGTGAACAGCG 60.179 55.000 0.00 0.00 0.00 5.18
3844 5020 4.395854 TCCATGACTGGACAAATGAATTCG 59.604 41.667 0.04 0.00 46.95 3.34
3950 5126 7.650504 TGTACTAATTATCTGTATCACGCAACC 59.349 37.037 0.00 0.00 0.00 3.77
4004 5180 1.405105 TCGCAAAGGCCAAAGATATGC 59.595 47.619 5.01 3.39 36.38 3.14
4129 5305 4.164822 AGCTGTTGACAATGTATGCAAC 57.835 40.909 8.83 8.83 41.91 4.17
4141 5317 9.410556 GACAATGTATGCAACAATAGAACTTTT 57.589 29.630 0.00 0.00 42.70 2.27
4165 5341 8.506168 TTATTTTTGGAGTAGTTGCTATCTGG 57.494 34.615 0.00 0.00 0.00 3.86
4178 5354 4.832248 TGCTATCTGGTTCAAAGTAGTGG 58.168 43.478 0.00 0.00 0.00 4.00
4297 5474 3.399440 ACTTCTGAACTCAAGGAGCTG 57.601 47.619 0.00 0.00 32.04 4.24
4360 5537 3.314080 TCGACCCTTGCTTTTGTTAACAG 59.686 43.478 8.56 0.00 0.00 3.16
4372 5549 7.094805 TGCTTTTGTTAACAGCTACCTCTATTG 60.095 37.037 16.46 0.00 34.42 1.90
4390 5567 4.579454 ATTGCACACATTATGCCAGATC 57.421 40.909 0.00 0.00 42.69 2.75
4523 5700 5.592054 CGTCTAGGCTCATGAAACTTATGA 58.408 41.667 0.00 0.00 33.76 2.15
4599 5776 5.205056 TGAGGTTGGTTGGTTTTGAACTAT 58.795 37.500 0.00 0.00 0.00 2.12
4801 5980 5.780958 AAGCCTCCTTTTATGACTTAGGT 57.219 39.130 0.00 0.00 0.00 3.08
4843 6022 4.019174 AGCAGGTTTCAGAATATGTTGGG 58.981 43.478 0.00 0.00 0.00 4.12
4857 6036 2.507484 TGTTGGGCAACTGAATGAGAG 58.493 47.619 0.00 0.00 41.67 3.20
4967 6146 5.105554 TGTGCTGAAAAGCTAAAGAACCAAA 60.106 36.000 0.00 0.00 35.49 3.28
5064 6243 8.154649 TCTTACTTGCCTAGCTAAAATTATGC 57.845 34.615 0.00 0.00 0.00 3.14
5065 6244 7.993183 TCTTACTTGCCTAGCTAAAATTATGCT 59.007 33.333 0.00 5.35 40.43 3.79
5131 6310 9.466497 TCCAAGATTTATTTATGCTGAAGAAGT 57.534 29.630 0.00 0.00 0.00 3.01
5291 6470 1.714414 CTCGACCTACCGTGACGAG 59.286 63.158 6.54 0.00 42.77 4.18
5403 6582 4.593597 TCAACTTCGTTCTTCACACAAC 57.406 40.909 0.00 0.00 0.00 3.32
5510 6689 5.123027 CCCTCGAAAGATCTTCTTTTCCTTG 59.877 44.000 8.78 0.00 45.85 3.61
5561 6740 6.358974 TCTCACTTAGTGGATCATGAAACA 57.641 37.500 12.79 0.00 33.87 2.83
5633 6812 5.321959 TGCTGACTGAAAAACACAATCAA 57.678 34.783 0.00 0.00 0.00 2.57
5722 6901 5.351740 TGCATTCACATTTGCACCATATTTG 59.648 36.000 0.00 0.00 43.54 2.32
5728 6907 8.929827 TCACATTTGCACCATATTTGAATTAG 57.070 30.769 0.00 0.00 0.00 1.73
5752 6931 7.486647 AGAGAACTAAGAAACAAGTTGTACGA 58.513 34.615 9.37 0.81 36.10 3.43
5755 6934 9.106070 AGAACTAAGAAACAAGTTGTACGAATT 57.894 29.630 9.37 0.00 36.10 2.17
5818 6997 7.489113 CACAAAATGGATACTTATTGGTCAAGC 59.511 37.037 0.00 0.00 37.61 4.01
5897 7077 2.543777 TCCTGACACAACTAGCAACC 57.456 50.000 0.00 0.00 0.00 3.77
5906 7086 5.001232 ACACAACTAGCAACCGAACAATAT 58.999 37.500 0.00 0.00 0.00 1.28
5941 7121 5.642063 ACCTTATGGACATGTTAACACTTCG 59.358 40.000 11.22 2.64 37.04 3.79
5942 7122 5.872617 CCTTATGGACATGTTAACACTTCGA 59.127 40.000 11.22 7.86 34.57 3.71
5954 7136 1.404035 ACACTTCGAACAAGTTTGGGC 59.596 47.619 0.00 0.00 0.00 5.36
5993 7175 9.935682 TTAGACAAGAAATGCGATTATTCAATC 57.064 29.630 0.00 0.00 37.74 2.67
5996 7178 7.198390 ACAAGAAATGCGATTATTCAATCCAG 58.802 34.615 0.00 0.00 37.82 3.86
6006 7188 6.765989 CGATTATTCAATCCAGACCACCTTTA 59.234 38.462 0.00 0.00 37.82 1.85
6020 7202 9.877178 CAGACCACCTTTATATCATTCCTATAC 57.123 37.037 0.00 0.00 0.00 1.47
6048 7230 6.745450 GGTGACATATTTCGTTACCAATGTTG 59.255 38.462 0.00 0.00 41.44 3.33
6134 7316 5.447010 GCTTCGAATCAATTGAGGAACTGAG 60.447 44.000 14.54 6.92 41.55 3.35
6175 7357 6.260493 TCTTGTGGCAAAATTCAAATCAAAGG 59.740 34.615 0.00 0.00 0.00 3.11
6286 7468 3.462021 GATTAGTGGAAGGCAGTAGCAG 58.538 50.000 0.00 0.00 44.61 4.24
6304 7486 3.582208 AGCAGAAACTGTGAGATTCTCCT 59.418 43.478 11.12 0.00 35.52 3.69
6315 7497 5.105716 TGTGAGATTCTCCTAGTGCTGTAAC 60.106 44.000 11.12 0.00 0.00 2.50
6328 7510 2.093500 TGCTGTAACGATGGCAAGATCT 60.093 45.455 0.00 0.00 0.00 2.75
6342 7524 4.542662 CAAGATCTCTTGCCCGTTTATG 57.457 45.455 6.98 0.00 45.59 1.90
6343 7525 3.199880 AGATCTCTTGCCCGTTTATGG 57.800 47.619 0.00 0.00 0.00 2.74
6350 7532 2.757056 GCCCGTTTATGGCCGTGTC 61.757 63.158 8.05 0.00 43.33 3.67
6355 7537 2.195096 CGTTTATGGCCGTGTCGATTA 58.805 47.619 8.05 0.00 0.00 1.75
6366 7548 3.360384 CCGTGTCGATTAAGCGTTTATCG 60.360 47.826 13.44 11.26 43.12 2.92
6423 7605 3.288964 CCTGATCGTAGGGTAGTGAAGT 58.711 50.000 0.00 0.00 34.06 3.01
6521 7712 4.219725 TGATCAGTCAAGTGGTCGAATGTA 59.780 41.667 0.00 0.00 29.23 2.29
6531 7722 4.397103 AGTGGTCGAATGTACGATGTAGAA 59.603 41.667 0.00 0.00 43.93 2.10
6550 7741 5.542616 AGAATGCGTTTCTCAATCTGAAG 57.457 39.130 0.00 0.00 40.86 3.02
6556 7747 9.499479 AATGCGTTTCTCAATCTGAAGATATAT 57.501 29.630 0.00 0.00 33.73 0.86
6589 7780 0.736053 TCGTGTTGGGTTTGCAACTC 59.264 50.000 0.00 0.00 32.91 3.01
6620 7811 8.923683 CAAACTTAGTTGAGTTTACTACCTAGC 58.076 37.037 0.00 0.00 45.44 3.42
6621 7812 8.419922 AACTTAGTTGAGTTTACTACCTAGCT 57.580 34.615 0.00 0.00 36.49 3.32
6625 7816 5.653330 AGTTGAGTTTACTACCTAGCTCTCC 59.347 44.000 0.00 0.00 0.00 3.71
6650 7841 9.822185 CCTAAAATGGGAGAAATCAATTTTAGG 57.178 33.333 23.13 23.13 45.54 2.69
6651 7842 9.317936 CTAAAATGGGAGAAATCAATTTTAGGC 57.682 33.333 17.35 0.00 36.89 3.93
6652 7843 5.876651 ATGGGAGAAATCAATTTTAGGCC 57.123 39.130 0.00 0.00 0.00 5.19
6653 7844 4.946646 TGGGAGAAATCAATTTTAGGCCT 58.053 39.130 11.78 11.78 0.00 5.19
6654 7845 5.341169 TGGGAGAAATCAATTTTAGGCCTT 58.659 37.500 12.58 0.00 0.00 4.35
6655 7846 5.187576 TGGGAGAAATCAATTTTAGGCCTTG 59.812 40.000 12.58 1.79 0.00 3.61
6656 7847 5.187772 GGGAGAAATCAATTTTAGGCCTTGT 59.812 40.000 12.58 0.00 0.00 3.16
6657 7848 6.295859 GGGAGAAATCAATTTTAGGCCTTGTT 60.296 38.462 12.58 0.00 0.00 2.83
6658 7849 6.813649 GGAGAAATCAATTTTAGGCCTTGTTC 59.186 38.462 12.58 3.57 0.00 3.18
6659 7850 6.389906 AGAAATCAATTTTAGGCCTTGTTCG 58.610 36.000 12.58 0.00 0.00 3.95
6660 7851 4.718940 ATCAATTTTAGGCCTTGTTCGG 57.281 40.909 12.58 0.00 0.00 4.30
6669 7860 1.949257 CCTTGTTCGGCAACAGTCC 59.051 57.895 3.44 0.00 43.54 3.85
6670 7861 0.817634 CCTTGTTCGGCAACAGTCCA 60.818 55.000 3.44 0.00 43.54 4.02
6671 7862 0.307760 CTTGTTCGGCAACAGTCCAC 59.692 55.000 3.44 0.00 43.54 4.02
6672 7863 0.107410 TTGTTCGGCAACAGTCCACT 60.107 50.000 3.44 0.00 43.54 4.00
6673 7864 0.531974 TGTTCGGCAACAGTCCACTC 60.532 55.000 0.00 0.00 37.61 3.51
6674 7865 1.070786 TTCGGCAACAGTCCACTCC 59.929 57.895 0.00 0.00 0.00 3.85
6675 7866 1.407656 TTCGGCAACAGTCCACTCCT 61.408 55.000 0.00 0.00 0.00 3.69
6676 7867 1.374758 CGGCAACAGTCCACTCCTC 60.375 63.158 0.00 0.00 0.00 3.71
6677 7868 1.003233 GGCAACAGTCCACTCCTCC 60.003 63.158 0.00 0.00 0.00 4.30
6678 7869 1.754745 GCAACAGTCCACTCCTCCA 59.245 57.895 0.00 0.00 0.00 3.86
6679 7870 0.321122 GCAACAGTCCACTCCTCCAG 60.321 60.000 0.00 0.00 0.00 3.86
6680 7871 1.342074 CAACAGTCCACTCCTCCAGA 58.658 55.000 0.00 0.00 0.00 3.86
6681 7872 1.694150 CAACAGTCCACTCCTCCAGAA 59.306 52.381 0.00 0.00 0.00 3.02
6682 7873 1.343069 ACAGTCCACTCCTCCAGAAC 58.657 55.000 0.00 0.00 0.00 3.01
6683 7874 0.244994 CAGTCCACTCCTCCAGAACG 59.755 60.000 0.00 0.00 0.00 3.95
6684 7875 0.900647 AGTCCACTCCTCCAGAACGG 60.901 60.000 0.00 0.00 0.00 4.44
6685 7876 0.898789 GTCCACTCCTCCAGAACGGA 60.899 60.000 0.00 0.00 43.61 4.69
6692 7883 2.282958 TCCAGAACGGAGCGGAGT 60.283 61.111 0.00 0.00 39.64 3.85
6693 7884 2.125912 CCAGAACGGAGCGGAGTG 60.126 66.667 0.00 0.00 36.56 3.51
6694 7885 2.811317 CAGAACGGAGCGGAGTGC 60.811 66.667 0.00 0.00 46.98 4.40
6703 7894 2.820037 GCGGAGTGCCAGGTTAGC 60.820 66.667 0.00 0.00 37.76 3.09
6704 7895 2.662596 CGGAGTGCCAGGTTAGCA 59.337 61.111 0.00 0.00 38.08 3.49
6705 7896 1.448540 CGGAGTGCCAGGTTAGCAG 60.449 63.158 0.00 0.00 41.87 4.24
6706 7897 1.746991 GGAGTGCCAGGTTAGCAGC 60.747 63.158 0.00 0.00 41.87 5.25
6707 7898 1.298014 GAGTGCCAGGTTAGCAGCT 59.702 57.895 0.00 0.00 41.87 4.24
6708 7899 0.742635 GAGTGCCAGGTTAGCAGCTC 60.743 60.000 0.00 0.00 41.87 4.09
6709 7900 1.746991 GTGCCAGGTTAGCAGCTCC 60.747 63.158 0.00 0.00 41.87 4.70
6710 7901 2.124529 GCCAGGTTAGCAGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
6711 7902 2.592308 CCAGGTTAGCAGCTCCCC 59.408 66.667 0.00 0.00 0.00 4.81
6712 7903 2.300967 CCAGGTTAGCAGCTCCCCA 61.301 63.158 0.00 0.00 0.00 4.96
6713 7904 1.685224 CAGGTTAGCAGCTCCCCAA 59.315 57.895 0.00 0.00 0.00 4.12
6714 7905 0.038166 CAGGTTAGCAGCTCCCCAAA 59.962 55.000 0.00 0.00 0.00 3.28
6715 7906 1.002857 AGGTTAGCAGCTCCCCAAAT 58.997 50.000 0.00 0.00 0.00 2.32
6716 7907 1.359130 AGGTTAGCAGCTCCCCAAATT 59.641 47.619 0.00 0.00 0.00 1.82
6717 7908 2.580783 AGGTTAGCAGCTCCCCAAATTA 59.419 45.455 0.00 0.00 0.00 1.40
6718 7909 2.688446 GGTTAGCAGCTCCCCAAATTAC 59.312 50.000 0.00 0.00 0.00 1.89
6719 7910 3.352648 GTTAGCAGCTCCCCAAATTACA 58.647 45.455 0.00 0.00 0.00 2.41
6720 7911 2.603075 AGCAGCTCCCCAAATTACAA 57.397 45.000 0.00 0.00 0.00 2.41
6721 7912 2.171003 AGCAGCTCCCCAAATTACAAC 58.829 47.619 0.00 0.00 0.00 3.32
6722 7913 2.171003 GCAGCTCCCCAAATTACAACT 58.829 47.619 0.00 0.00 0.00 3.16
6723 7914 3.010138 AGCAGCTCCCCAAATTACAACTA 59.990 43.478 0.00 0.00 0.00 2.24
6724 7915 3.128764 GCAGCTCCCCAAATTACAACTAC 59.871 47.826 0.00 0.00 0.00 2.73
6725 7916 4.331968 CAGCTCCCCAAATTACAACTACA 58.668 43.478 0.00 0.00 0.00 2.74
6726 7917 4.949856 CAGCTCCCCAAATTACAACTACAT 59.050 41.667 0.00 0.00 0.00 2.29
6727 7918 4.949856 AGCTCCCCAAATTACAACTACATG 59.050 41.667 0.00 0.00 0.00 3.21
6728 7919 4.440112 GCTCCCCAAATTACAACTACATGC 60.440 45.833 0.00 0.00 0.00 4.06
6729 7920 4.020543 TCCCCAAATTACAACTACATGCC 58.979 43.478 0.00 0.00 0.00 4.40
6730 7921 3.181491 CCCCAAATTACAACTACATGCCG 60.181 47.826 0.00 0.00 0.00 5.69
6731 7922 3.434637 CCAAATTACAACTACATGCCGC 58.565 45.455 0.00 0.00 0.00 6.53
6732 7923 3.128589 CCAAATTACAACTACATGCCGCT 59.871 43.478 0.00 0.00 0.00 5.52
6733 7924 4.380444 CCAAATTACAACTACATGCCGCTT 60.380 41.667 0.00 0.00 0.00 4.68
6734 7925 4.616181 AATTACAACTACATGCCGCTTC 57.384 40.909 0.00 0.00 0.00 3.86
6735 7926 1.635844 TACAACTACATGCCGCTTCG 58.364 50.000 0.00 0.00 0.00 3.79
6773 7964 3.147553 GGAGGGATTCCAAATAGGCTC 57.852 52.381 4.80 0.00 46.01 4.70
6774 7965 2.713708 GGAGGGATTCCAAATAGGCTCT 59.286 50.000 4.80 0.00 46.01 4.09
6775 7966 3.139211 GGAGGGATTCCAAATAGGCTCTT 59.861 47.826 4.80 0.00 46.01 2.85
6776 7967 4.351111 GGAGGGATTCCAAATAGGCTCTTA 59.649 45.833 4.80 0.00 46.01 2.10
6777 7968 5.513962 GGAGGGATTCCAAATAGGCTCTTAG 60.514 48.000 4.80 0.00 46.01 2.18
6778 7969 5.227593 AGGGATTCCAAATAGGCTCTTAGA 58.772 41.667 4.80 0.00 37.29 2.10
6779 7970 5.309282 AGGGATTCCAAATAGGCTCTTAGAG 59.691 44.000 4.63 4.63 37.29 2.43
6780 7971 8.162103 AGGGATTCCAAATAGGCTCTTAGAGC 62.162 46.154 24.63 24.63 44.38 4.09
6793 7984 4.920376 CTCTTAGAGCAACTCTAGCAGAC 58.080 47.826 0.00 0.00 42.92 3.51
6794 7985 3.697045 TCTTAGAGCAACTCTAGCAGACC 59.303 47.826 4.64 0.00 42.92 3.85
6795 7986 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
6796 7987 1.190643 GAGCAACTCTAGCAGACCCT 58.809 55.000 0.00 0.00 0.00 4.34
6797 7988 0.901124 AGCAACTCTAGCAGACCCTG 59.099 55.000 0.00 0.00 34.12 4.45
6798 7989 0.610687 GCAACTCTAGCAGACCCTGT 59.389 55.000 0.00 0.00 33.43 4.00
6799 7990 1.825474 GCAACTCTAGCAGACCCTGTA 59.175 52.381 0.00 0.00 33.43 2.74
6800 7991 2.233922 GCAACTCTAGCAGACCCTGTAA 59.766 50.000 0.00 0.00 33.43 2.41
6801 7992 3.306780 GCAACTCTAGCAGACCCTGTAAA 60.307 47.826 0.00 0.00 33.43 2.01
6802 7993 4.802918 GCAACTCTAGCAGACCCTGTAAAA 60.803 45.833 0.00 0.00 33.43 1.52
6803 7994 4.810191 ACTCTAGCAGACCCTGTAAAAG 57.190 45.455 0.00 0.00 33.43 2.27
6804 7995 4.161102 ACTCTAGCAGACCCTGTAAAAGT 58.839 43.478 0.00 0.00 33.43 2.66
6805 7996 4.221041 ACTCTAGCAGACCCTGTAAAAGTC 59.779 45.833 0.00 0.00 33.43 3.01
6806 7997 2.457366 AGCAGACCCTGTAAAAGTCG 57.543 50.000 0.00 0.00 35.65 4.18
6807 7998 0.796927 GCAGACCCTGTAAAAGTCGC 59.203 55.000 0.00 0.00 35.65 5.19
6808 7999 1.876416 GCAGACCCTGTAAAAGTCGCA 60.876 52.381 0.00 0.00 35.65 5.10
6809 8000 2.489971 CAGACCCTGTAAAAGTCGCAA 58.510 47.619 0.00 0.00 35.65 4.85
6810 8001 2.875933 CAGACCCTGTAAAAGTCGCAAA 59.124 45.455 0.00 0.00 35.65 3.68
6811 8002 2.876550 AGACCCTGTAAAAGTCGCAAAC 59.123 45.455 0.00 0.00 35.65 2.93
6812 8003 1.951602 ACCCTGTAAAAGTCGCAAACC 59.048 47.619 0.00 0.00 0.00 3.27
6813 8004 1.268625 CCCTGTAAAAGTCGCAAACCC 59.731 52.381 0.00 0.00 0.00 4.11
6814 8005 1.069500 CCTGTAAAAGTCGCAAACCCG 60.069 52.381 0.00 0.00 0.00 5.28
6815 8006 0.308376 TGTAAAAGTCGCAAACCCGC 59.692 50.000 0.00 0.00 0.00 6.13
6816 8007 0.308376 GTAAAAGTCGCAAACCCGCA 59.692 50.000 0.00 0.00 0.00 5.69
6817 8008 1.022735 TAAAAGTCGCAAACCCGCAA 58.977 45.000 0.00 0.00 0.00 4.85
6818 8009 0.173708 AAAAGTCGCAAACCCGCAAA 59.826 45.000 0.00 0.00 0.00 3.68
6819 8010 0.173708 AAAGTCGCAAACCCGCAAAA 59.826 45.000 0.00 0.00 0.00 2.44
6820 8011 0.387565 AAGTCGCAAACCCGCAAAAT 59.612 45.000 0.00 0.00 0.00 1.82
6821 8012 0.387565 AGTCGCAAACCCGCAAAATT 59.612 45.000 0.00 0.00 0.00 1.82
6822 8013 0.781787 GTCGCAAACCCGCAAAATTC 59.218 50.000 0.00 0.00 0.00 2.17
6823 8014 0.319125 TCGCAAACCCGCAAAATTCC 60.319 50.000 0.00 0.00 0.00 3.01
6824 8015 1.613347 CGCAAACCCGCAAAATTCCG 61.613 55.000 0.00 0.00 0.00 4.30
6825 8016 1.288419 GCAAACCCGCAAAATTCCGG 61.288 55.000 0.00 0.00 43.97 5.14
6826 8017 1.005512 AAACCCGCAAAATTCCGGC 60.006 52.632 0.00 0.00 43.05 6.13
6834 8025 3.249013 GCAAAATTCCGGCGAGTATAC 57.751 47.619 9.30 0.00 0.00 1.47
6835 8026 2.348218 GCAAAATTCCGGCGAGTATACG 60.348 50.000 9.30 0.00 0.00 3.06
6839 8030 3.122850 CCGGCGAGTATACGGGTT 58.877 61.111 9.30 0.00 43.69 4.11
6840 8031 1.008079 CCGGCGAGTATACGGGTTC 60.008 63.158 9.30 0.00 43.69 3.62
6841 8032 1.369689 CGGCGAGTATACGGGTTCG 60.370 63.158 0.00 7.64 43.02 3.95
6842 8033 1.008079 GGCGAGTATACGGGTTCGG 60.008 63.158 12.47 0.00 41.39 4.30
6843 8034 1.659644 GCGAGTATACGGGTTCGGC 60.660 63.158 12.47 3.74 41.39 5.54
6844 8035 1.008079 CGAGTATACGGGTTCGGCC 60.008 63.158 0.00 0.00 41.39 6.13
6868 8059 1.408969 TTTTTGGCCAGAACAGACCC 58.591 50.000 8.49 0.00 0.00 4.46
6869 8060 0.821711 TTTTGGCCAGAACAGACCCG 60.822 55.000 5.11 0.00 0.00 5.28
6870 8061 1.990160 TTTGGCCAGAACAGACCCGT 61.990 55.000 5.11 0.00 0.00 5.28
6871 8062 1.122632 TTGGCCAGAACAGACCCGTA 61.123 55.000 5.11 0.00 0.00 4.02
6872 8063 0.907704 TGGCCAGAACAGACCCGTAT 60.908 55.000 0.00 0.00 0.00 3.06
6873 8064 1.117150 GGCCAGAACAGACCCGTATA 58.883 55.000 0.00 0.00 0.00 1.47
6874 8065 1.202498 GGCCAGAACAGACCCGTATAC 60.202 57.143 0.00 0.00 0.00 1.47
6875 8066 1.755380 GCCAGAACAGACCCGTATACT 59.245 52.381 0.56 0.00 0.00 2.12
6876 8067 2.167900 GCCAGAACAGACCCGTATACTT 59.832 50.000 0.56 0.00 0.00 2.24
6877 8068 3.782046 CCAGAACAGACCCGTATACTTG 58.218 50.000 0.56 0.00 0.00 3.16
6878 8069 3.187700 CAGAACAGACCCGTATACTTGC 58.812 50.000 0.56 0.00 0.00 4.01
6879 8070 2.167900 AGAACAGACCCGTATACTTGCC 59.832 50.000 0.56 0.00 0.00 4.52
6880 8071 0.828677 ACAGACCCGTATACTTGCCC 59.171 55.000 0.56 0.00 0.00 5.36
6881 8072 0.828022 CAGACCCGTATACTTGCCCA 59.172 55.000 0.56 0.00 0.00 5.36
6882 8073 1.120530 AGACCCGTATACTTGCCCAG 58.879 55.000 0.56 0.00 0.00 4.45
6883 8074 0.828677 GACCCGTATACTTGCCCAGT 59.171 55.000 0.56 0.00 39.87 4.00
6884 8075 0.828677 ACCCGTATACTTGCCCAGTC 59.171 55.000 0.56 0.00 36.88 3.51
6885 8076 0.106149 CCCGTATACTTGCCCAGTCC 59.894 60.000 0.56 0.00 36.88 3.85
6886 8077 0.828022 CCGTATACTTGCCCAGTCCA 59.172 55.000 0.56 0.00 36.88 4.02
6887 8078 1.416401 CCGTATACTTGCCCAGTCCAT 59.584 52.381 0.56 0.00 36.88 3.41
6888 8079 2.631062 CCGTATACTTGCCCAGTCCATA 59.369 50.000 0.56 0.00 36.88 2.74
6889 8080 3.070446 CCGTATACTTGCCCAGTCCATAA 59.930 47.826 0.56 0.00 36.88 1.90
6890 8081 4.056050 CGTATACTTGCCCAGTCCATAAC 58.944 47.826 0.56 0.00 36.88 1.89
6891 8082 4.442332 CGTATACTTGCCCAGTCCATAACA 60.442 45.833 0.56 0.00 36.88 2.41
6892 8083 2.969821 ACTTGCCCAGTCCATAACAA 57.030 45.000 0.00 0.00 0.00 2.83
6893 8084 3.237268 ACTTGCCCAGTCCATAACAAA 57.763 42.857 0.00 0.00 0.00 2.83
6894 8085 3.571590 ACTTGCCCAGTCCATAACAAAA 58.428 40.909 0.00 0.00 0.00 2.44
6895 8086 4.159557 ACTTGCCCAGTCCATAACAAAAT 58.840 39.130 0.00 0.00 0.00 1.82
6896 8087 4.592778 ACTTGCCCAGTCCATAACAAAATT 59.407 37.500 0.00 0.00 0.00 1.82
6897 8088 5.071653 ACTTGCCCAGTCCATAACAAAATTT 59.928 36.000 0.00 0.00 0.00 1.82
6898 8089 6.268847 ACTTGCCCAGTCCATAACAAAATTTA 59.731 34.615 0.00 0.00 0.00 1.40
6899 8090 6.031751 TGCCCAGTCCATAACAAAATTTAC 57.968 37.500 0.00 0.00 0.00 2.01
6900 8091 5.777732 TGCCCAGTCCATAACAAAATTTACT 59.222 36.000 0.00 0.00 0.00 2.24
6901 8092 6.099341 GCCCAGTCCATAACAAAATTTACTG 58.901 40.000 6.52 6.52 34.33 2.74
6902 8093 6.099341 CCCAGTCCATAACAAAATTTACTGC 58.901 40.000 7.61 0.00 33.44 4.40
6903 8094 5.799936 CCAGTCCATAACAAAATTTACTGCG 59.200 40.000 7.61 0.38 33.44 5.18
6904 8095 5.799936 CAGTCCATAACAAAATTTACTGCGG 59.200 40.000 0.00 0.00 0.00 5.69
6905 8096 4.561213 GTCCATAACAAAATTTACTGCGGC 59.439 41.667 0.00 0.00 0.00 6.53
6906 8097 3.862845 CCATAACAAAATTTACTGCGGCC 59.137 43.478 0.00 0.00 0.00 6.13
6907 8098 4.381505 CCATAACAAAATTTACTGCGGCCT 60.382 41.667 0.00 0.00 0.00 5.19
6908 8099 2.723124 ACAAAATTTACTGCGGCCTG 57.277 45.000 0.00 0.00 0.00 4.85
6909 8100 1.336795 ACAAAATTTACTGCGGCCTGC 60.337 47.619 11.92 11.92 46.70 4.85
6941 8132 3.594603 CCCCCAAGCAGTATATCTACG 57.405 52.381 0.00 0.00 32.82 3.51
6942 8133 2.233922 CCCCCAAGCAGTATATCTACGG 59.766 54.545 0.00 0.00 32.82 4.02
6943 8134 2.233922 CCCCAAGCAGTATATCTACGGG 59.766 54.545 0.00 0.00 32.82 5.28
6944 8135 2.897969 CCCAAGCAGTATATCTACGGGT 59.102 50.000 0.00 0.00 35.67 5.28
6945 8136 3.323979 CCCAAGCAGTATATCTACGGGTT 59.676 47.826 1.08 1.08 42.07 4.11
6946 8137 4.557205 CCAAGCAGTATATCTACGGGTTC 58.443 47.826 3.50 0.00 40.29 3.62
6947 8138 4.227538 CAAGCAGTATATCTACGGGTTCG 58.772 47.826 3.50 0.00 40.29 3.95
6959 8150 0.859232 CGGGTTCGTAGTGCATATGC 59.141 55.000 21.09 21.09 42.50 3.14
6960 8151 0.859232 GGGTTCGTAGTGCATATGCG 59.141 55.000 22.21 8.12 45.83 4.73
6961 8152 0.859232 GGTTCGTAGTGCATATGCGG 59.141 55.000 22.21 9.26 45.83 5.69
6962 8153 0.859232 GTTCGTAGTGCATATGCGGG 59.141 55.000 22.21 9.58 45.83 6.13
6963 8154 0.462375 TTCGTAGTGCATATGCGGGT 59.538 50.000 22.21 11.71 45.83 5.28
6964 8155 0.031585 TCGTAGTGCATATGCGGGTC 59.968 55.000 22.21 12.38 45.83 4.46
6965 8156 1.275471 CGTAGTGCATATGCGGGTCG 61.275 60.000 22.21 18.66 45.83 4.79
6966 8157 0.031585 GTAGTGCATATGCGGGTCGA 59.968 55.000 22.21 0.87 45.83 4.20
6967 8158 0.747852 TAGTGCATATGCGGGTCGAA 59.252 50.000 22.21 0.09 45.83 3.71
6968 8159 0.107897 AGTGCATATGCGGGTCGAAA 60.108 50.000 22.21 0.00 45.83 3.46
6969 8160 0.027586 GTGCATATGCGGGTCGAAAC 59.972 55.000 22.21 8.81 45.83 2.78
6970 8161 1.092921 TGCATATGCGGGTCGAAACC 61.093 55.000 22.21 0.00 45.83 3.27
6979 8170 1.834996 GGTCGAAACCCTATCCCCC 59.165 63.158 0.00 0.00 39.93 5.40
6980 8171 1.444672 GTCGAAACCCTATCCCCCG 59.555 63.158 0.00 0.00 0.00 5.73
6981 8172 2.110420 CGAAACCCTATCCCCCGC 59.890 66.667 0.00 0.00 0.00 6.13
6982 8173 2.514395 GAAACCCTATCCCCCGCC 59.486 66.667 0.00 0.00 0.00 6.13
6983 8174 3.471402 GAAACCCTATCCCCCGCCG 62.471 68.421 0.00 0.00 0.00 6.46
7004 8195 3.093278 CGACTCGCTGCAATTCCC 58.907 61.111 0.00 0.00 0.00 3.97
7005 8196 2.464459 CGACTCGCTGCAATTCCCC 61.464 63.158 0.00 0.00 0.00 4.81
7006 8197 1.377202 GACTCGCTGCAATTCCCCA 60.377 57.895 0.00 0.00 0.00 4.96
7007 8198 1.648467 GACTCGCTGCAATTCCCCAC 61.648 60.000 0.00 0.00 0.00 4.61
7008 8199 1.377725 CTCGCTGCAATTCCCCACT 60.378 57.895 0.00 0.00 0.00 4.00
7009 8200 1.372087 CTCGCTGCAATTCCCCACTC 61.372 60.000 0.00 0.00 0.00 3.51
7010 8201 2.409870 CGCTGCAATTCCCCACTCC 61.410 63.158 0.00 0.00 0.00 3.85
7011 8202 2.054453 GCTGCAATTCCCCACTCCC 61.054 63.158 0.00 0.00 0.00 4.30
7012 8203 1.380380 CTGCAATTCCCCACTCCCC 60.380 63.158 0.00 0.00 0.00 4.81
7013 8204 1.856873 TGCAATTCCCCACTCCCCT 60.857 57.895 0.00 0.00 0.00 4.79
7014 8205 1.076705 GCAATTCCCCACTCCCCTC 60.077 63.158 0.00 0.00 0.00 4.30
7015 8206 1.863155 GCAATTCCCCACTCCCCTCA 61.863 60.000 0.00 0.00 0.00 3.86
7016 8207 0.034089 CAATTCCCCACTCCCCTCAC 60.034 60.000 0.00 0.00 0.00 3.51
7017 8208 0.477597 AATTCCCCACTCCCCTCACA 60.478 55.000 0.00 0.00 0.00 3.58
7018 8209 0.253820 ATTCCCCACTCCCCTCACAT 60.254 55.000 0.00 0.00 0.00 3.21
7019 8210 0.477597 TTCCCCACTCCCCTCACATT 60.478 55.000 0.00 0.00 0.00 2.71
7020 8211 0.477597 TCCCCACTCCCCTCACATTT 60.478 55.000 0.00 0.00 0.00 2.32
7021 8212 0.034089 CCCCACTCCCCTCACATTTC 60.034 60.000 0.00 0.00 0.00 2.17
7022 8213 0.995024 CCCACTCCCCTCACATTTCT 59.005 55.000 0.00 0.00 0.00 2.52
7023 8214 1.065126 CCCACTCCCCTCACATTTCTC 60.065 57.143 0.00 0.00 0.00 2.87
7024 8215 1.406069 CCACTCCCCTCACATTTCTCG 60.406 57.143 0.00 0.00 0.00 4.04
7025 8216 0.250513 ACTCCCCTCACATTTCTCGC 59.749 55.000 0.00 0.00 0.00 5.03
7026 8217 0.462759 CTCCCCTCACATTTCTCGCC 60.463 60.000 0.00 0.00 0.00 5.54
7027 8218 1.815421 CCCCTCACATTTCTCGCCG 60.815 63.158 0.00 0.00 0.00 6.46
7028 8219 2.464459 CCCTCACATTTCTCGCCGC 61.464 63.158 0.00 0.00 0.00 6.53
7029 8220 2.464459 CCTCACATTTCTCGCCGCC 61.464 63.158 0.00 0.00 0.00 6.13
7030 8221 2.802667 CTCACATTTCTCGCCGCCG 61.803 63.158 0.00 0.00 0.00 6.46
7031 8222 3.864686 CACATTTCTCGCCGCCGG 61.865 66.667 0.00 0.00 34.56 6.13
7032 8223 4.388499 ACATTTCTCGCCGCCGGT 62.388 61.111 4.45 0.00 34.56 5.28
7033 8224 3.864686 CATTTCTCGCCGCCGGTG 61.865 66.667 11.20 11.20 34.56 4.94
7034 8225 4.077184 ATTTCTCGCCGCCGGTGA 62.077 61.111 19.61 19.61 40.17 4.02
7080 8271 3.512516 GGCCGCATGTGGAGCTTC 61.513 66.667 29.49 10.33 0.00 3.86
7081 8272 3.869272 GCCGCATGTGGAGCTTCG 61.869 66.667 29.49 3.68 0.00 3.79
7082 8273 3.197790 CCGCATGTGGAGCTTCGG 61.198 66.667 21.19 4.45 0.00 4.30
7083 8274 3.869272 CGCATGTGGAGCTTCGGC 61.869 66.667 0.00 0.00 42.17 5.54
7084 8275 3.512516 GCATGTGGAGCTTCGGCC 61.513 66.667 0.00 0.00 43.01 6.13
7085 8276 3.197790 CATGTGGAGCTTCGGCCG 61.198 66.667 22.12 22.12 43.01 6.13
7144 8335 4.664677 GCGAGCGGTGTGTCCACT 62.665 66.667 0.00 0.00 41.53 4.00
7145 8336 2.430921 CGAGCGGTGTGTCCACTC 60.431 66.667 0.00 0.00 40.79 3.51
7146 8337 2.430921 GAGCGGTGTGTCCACTCG 60.431 66.667 0.00 4.55 41.53 4.18
7147 8338 3.916392 GAGCGGTGTGTCCACTCGG 62.916 68.421 0.00 8.52 41.53 4.63
7148 8339 3.986006 GCGGTGTGTCCACTCGGA 61.986 66.667 10.12 0.00 41.53 4.55
7157 8348 4.813526 CCACTCGGACGACGCGAG 62.814 72.222 15.93 19.07 43.86 5.03
7158 8349 4.813526 CACTCGGACGACGCGAGG 62.814 72.222 22.77 6.33 43.86 4.63
7160 8351 3.796443 CTCGGACGACGCGAGGAA 61.796 66.667 15.93 0.00 43.86 3.36
7161 8352 3.720106 CTCGGACGACGCGAGGAAG 62.720 68.421 15.93 0.85 43.86 3.46
7162 8353 4.099170 CGGACGACGCGAGGAAGT 62.099 66.667 15.93 4.60 34.82 3.01
7163 8354 2.504244 GGACGACGCGAGGAAGTG 60.504 66.667 15.93 0.00 0.00 3.16
7164 8355 3.173240 GACGACGCGAGGAAGTGC 61.173 66.667 15.93 0.00 0.00 4.40
7181 8372 2.182030 CGGAGCGAGGAAGTGGAC 59.818 66.667 0.00 0.00 0.00 4.02
7182 8373 2.636412 CGGAGCGAGGAAGTGGACA 61.636 63.158 0.00 0.00 0.00 4.02
7183 8374 1.671742 GGAGCGAGGAAGTGGACAA 59.328 57.895 0.00 0.00 0.00 3.18
7184 8375 0.034896 GGAGCGAGGAAGTGGACAAA 59.965 55.000 0.00 0.00 0.00 2.83
7185 8376 1.149148 GAGCGAGGAAGTGGACAAAC 58.851 55.000 0.00 0.00 0.00 2.93
7186 8377 0.468226 AGCGAGGAAGTGGACAAACA 59.532 50.000 0.00 0.00 0.00 2.83
7187 8378 1.134220 AGCGAGGAAGTGGACAAACAA 60.134 47.619 0.00 0.00 0.00 2.83
7188 8379 1.264288 GCGAGGAAGTGGACAAACAAG 59.736 52.381 0.00 0.00 0.00 3.16
7189 8380 1.873591 CGAGGAAGTGGACAAACAAGG 59.126 52.381 0.00 0.00 0.00 3.61
7190 8381 2.230660 GAGGAAGTGGACAAACAAGGG 58.769 52.381 0.00 0.00 0.00 3.95
7191 8382 0.673985 GGAAGTGGACAAACAAGGGC 59.326 55.000 0.00 0.00 0.00 5.19
7192 8383 0.673985 GAAGTGGACAAACAAGGGCC 59.326 55.000 0.00 0.00 0.00 5.80
7193 8384 0.261696 AAGTGGACAAACAAGGGCCT 59.738 50.000 0.00 0.00 0.00 5.19
7194 8385 0.178990 AGTGGACAAACAAGGGCCTC 60.179 55.000 6.46 0.00 0.00 4.70
7195 8386 1.228124 TGGACAAACAAGGGCCTCG 60.228 57.895 6.46 0.00 0.00 4.63
7196 8387 1.072505 GGACAAACAAGGGCCTCGA 59.927 57.895 6.46 0.00 0.00 4.04
7197 8388 1.235281 GGACAAACAAGGGCCTCGAC 61.235 60.000 6.46 0.00 0.00 4.20
7198 8389 0.250338 GACAAACAAGGGCCTCGACT 60.250 55.000 6.46 0.00 0.00 4.18
7199 8390 0.250338 ACAAACAAGGGCCTCGACTC 60.250 55.000 6.46 0.00 0.00 3.36
7200 8391 1.004918 AAACAAGGGCCTCGACTCG 60.005 57.895 6.46 0.00 0.00 4.18
7201 8392 3.591254 AACAAGGGCCTCGACTCGC 62.591 63.158 6.46 0.00 0.00 5.03
7202 8393 4.821589 CAAGGGCCTCGACTCGCC 62.822 72.222 6.46 5.08 44.92 5.54
7208 8399 4.544689 CCTCGACTCGCCGCTGAG 62.545 72.222 9.69 9.69 41.86 3.35
7211 8402 4.785512 CGACTCGCCGCTGAGCTT 62.786 66.667 1.78 0.00 39.68 3.74
7212 8403 2.883253 GACTCGCCGCTGAGCTTC 60.883 66.667 1.78 0.00 39.68 3.86
7213 8404 4.443266 ACTCGCCGCTGAGCTTCC 62.443 66.667 1.78 0.00 39.68 3.46
7214 8405 4.140599 CTCGCCGCTGAGCTTCCT 62.141 66.667 1.78 0.00 0.00 3.36
7215 8406 4.135153 TCGCCGCTGAGCTTCCTC 62.135 66.667 1.78 0.00 38.62 3.71
7217 8408 4.443266 GCCGCTGAGCTTCCTCGT 62.443 66.667 1.78 0.00 41.13 4.18
7218 8409 2.202676 CCGCTGAGCTTCCTCGTC 60.203 66.667 1.78 0.00 41.13 4.20
7219 8410 2.202676 CGCTGAGCTTCCTCGTCC 60.203 66.667 1.78 0.00 41.13 4.79
7220 8411 2.202676 GCTGAGCTTCCTCGTCCG 60.203 66.667 0.00 0.00 41.13 4.79
7221 8412 2.202676 CTGAGCTTCCTCGTCCGC 60.203 66.667 0.00 0.00 41.13 5.54
7222 8413 4.116328 TGAGCTTCCTCGTCCGCG 62.116 66.667 0.00 0.00 41.13 6.46
7223 8414 3.812019 GAGCTTCCTCGTCCGCGA 61.812 66.667 8.23 0.00 45.79 5.87
7236 8427 4.610844 CGCGAGACGGAGGAATAC 57.389 61.111 0.00 0.00 38.44 1.89
7237 8428 1.368969 CGCGAGACGGAGGAATACG 60.369 63.158 0.00 0.00 38.44 3.06
7238 8429 1.769098 CGCGAGACGGAGGAATACGA 61.769 60.000 0.00 0.00 38.44 3.43
7239 8430 0.316854 GCGAGACGGAGGAATACGAC 60.317 60.000 0.00 0.00 0.00 4.34
7240 8431 0.307146 CGAGACGGAGGAATACGACC 59.693 60.000 0.00 0.00 0.00 4.79
7241 8432 0.307146 GAGACGGAGGAATACGACCG 59.693 60.000 0.00 0.00 44.72 4.79
7242 8433 4.326255 ACGGAGGAATACGACCGT 57.674 55.556 0.00 0.00 46.17 4.83
7244 8435 2.100846 CGGAGGAATACGACCGTCA 58.899 57.895 0.00 0.00 38.43 4.35
7245 8436 0.029035 CGGAGGAATACGACCGTCAG 59.971 60.000 0.00 0.00 38.43 3.51
7246 8437 0.248949 GGAGGAATACGACCGTCAGC 60.249 60.000 0.00 0.00 0.00 4.26
7247 8438 0.454600 GAGGAATACGACCGTCAGCA 59.545 55.000 0.00 0.00 0.00 4.41
7248 8439 0.172803 AGGAATACGACCGTCAGCAC 59.827 55.000 0.00 0.00 0.00 4.40
7249 8440 1.138047 GGAATACGACCGTCAGCACG 61.138 60.000 0.00 0.00 46.29 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 129 1.136695 CAAGCAACTGTCCTGGCAAAA 59.863 47.619 0.00 0.00 0.00 2.44
235 239 7.201758 CCATGCAACTACATTATCAGAACACAT 60.202 37.037 0.00 0.00 0.00 3.21
334 338 4.927978 AACAAAACCAATCGATTGTCCA 57.072 36.364 30.71 0.00 35.09 4.02
541 548 7.230510 CCCAATATGGATAGGTTTCGATGAAAA 59.769 37.037 0.00 0.00 40.96 2.29
563 571 5.932303 CGAGTTCTTCAAAACTAGATCCCAA 59.068 40.000 0.00 0.00 39.55 4.12
674 682 2.030823 CACGTCAGTTCGCATGCATTAT 59.969 45.455 19.57 0.00 0.00 1.28
731 740 2.297937 GGAAGAACCGGTCCCTCAT 58.702 57.895 8.04 0.00 0.00 2.90
774 783 5.103728 TCCTAATATGAAAGGGACCATTGCA 60.104 40.000 1.08 1.08 33.40 4.08
879 888 3.855853 GGGCGAGAGGAAGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
881 890 0.686112 AGAAGGGCGAGAGGAAGAGG 60.686 60.000 0.00 0.00 0.00 3.69
969 982 1.914764 ACCTAAAGCGACCCCGGAA 60.915 57.895 0.73 0.00 36.06 4.30
1156 1169 1.446792 CGCGGTCTCTGTCATTGCT 60.447 57.895 0.00 0.00 0.00 3.91
1200 1213 1.375268 GAGAGCACCTCACCTGCAC 60.375 63.158 1.79 0.00 41.58 4.57
1286 1299 1.944676 CTACGCCACGATTCGCCTC 60.945 63.158 5.86 0.00 0.00 4.70
1333 1346 2.992593 TGTCACTACACAGTTGGCAAA 58.007 42.857 0.00 0.00 30.46 3.68
1421 1454 2.697431 TGCACCAGTCATAAAAACGC 57.303 45.000 0.00 0.00 0.00 4.84
1550 1583 5.406649 GTGTCAAAGGTGAATGTTTTGTCA 58.593 37.500 0.00 0.00 34.87 3.58
1573 1606 3.139077 GGGATCAATAGTGGCTTTACCG 58.861 50.000 0.00 0.00 43.94 4.02
1738 1954 8.758633 ACAGAGTACATGAAGTATACAACAAC 57.241 34.615 5.50 1.07 34.67 3.32
1766 1982 2.094390 CAGGGCCAAATCATCAACACAG 60.094 50.000 6.18 0.00 0.00 3.66
1834 2053 0.768221 TCAAACCTCCAGGCCTCTGT 60.768 55.000 0.00 0.00 39.31 3.41
1940 2159 2.037511 CTGCTGAGATTTTGGGCCAAAA 59.962 45.455 38.24 38.24 45.41 2.44
2183 2434 0.036010 GGCATGACACCAGCACTAGT 60.036 55.000 0.00 0.00 0.00 2.57
2242 2493 4.164988 ACCTTCATGCTATAGTCAGCCTTT 59.835 41.667 0.84 0.00 41.04 3.11
2334 2585 4.985538 AGGCCTTTTGTGTCTATCTTCAA 58.014 39.130 0.00 0.00 0.00 2.69
2360 2611 6.654161 CCTTTGCCATCTTCCATAAGAGATAG 59.346 42.308 0.00 0.00 44.79 2.08
2650 2901 3.610911 CTCCCACACTTTATGAGTTCCC 58.389 50.000 0.00 0.00 36.10 3.97
2660 2911 2.067365 GGTTCAACCTCCCACACTTT 57.933 50.000 0.00 0.00 34.73 2.66
2809 3063 7.309990 CCAGTTCAACCAAGTGAAAATATGGAT 60.310 37.037 0.00 0.00 39.18 3.41
2896 3150 5.758784 ACCTAAACTGAAAAGACTTCTTCGG 59.241 40.000 13.15 13.15 34.61 4.30
2944 3198 9.911788 AGAAGAAATTGCTTTGGAGATAAGATA 57.088 29.630 0.00 0.00 0.00 1.98
2982 3236 3.118038 TCACTTTACCAAGAACAGGTGCT 60.118 43.478 0.00 0.00 40.26 4.40
2983 3237 3.003378 GTCACTTTACCAAGAACAGGTGC 59.997 47.826 0.00 0.00 40.26 5.01
2984 3238 4.196193 TGTCACTTTACCAAGAACAGGTG 58.804 43.478 0.00 0.00 40.26 4.00
2985 3239 4.497291 TGTCACTTTACCAAGAACAGGT 57.503 40.909 0.00 0.00 43.14 4.00
2986 3240 4.260620 CGTTGTCACTTTACCAAGAACAGG 60.261 45.833 0.00 0.00 33.63 4.00
3013 3268 7.846644 ATGACAACACAAAACACATCAAAAT 57.153 28.000 0.00 0.00 0.00 1.82
3341 3597 6.774673 TGAATATGTTGAGTTTACTGTCCCA 58.225 36.000 0.00 0.00 0.00 4.37
3352 3608 9.757227 GTTAGCTCTAGAATGAATATGTTGAGT 57.243 33.333 0.00 0.00 0.00 3.41
3357 3613 9.703892 GACATGTTAGCTCTAGAATGAATATGT 57.296 33.333 16.04 16.04 33.19 2.29
3360 3616 9.360901 AGAGACATGTTAGCTCTAGAATGAATA 57.639 33.333 12.57 0.00 37.25 1.75
3694 4870 9.796120 TTATTTTCAACTTCAGTTTTCGATTGT 57.204 25.926 0.00 0.00 35.83 2.71
3749 4925 6.458206 CGAAGAAGTCCAAGACTCTGATCTAG 60.458 46.154 0.00 0.00 42.59 2.43
3751 4927 4.157656 CGAAGAAGTCCAAGACTCTGATCT 59.842 45.833 0.00 0.00 42.59 2.75
3788 4964 0.179250 CGCTGTTCACAAATCGACCG 60.179 55.000 0.00 0.00 0.00 4.79
3844 5020 9.384764 AGTACCTCAGATTTAGCTGAAAAATAC 57.615 33.333 0.00 0.93 43.75 1.89
3886 5062 7.422399 TGGTAATCTTGAACAGTTAACAAAGC 58.578 34.615 8.61 0.00 0.00 3.51
3950 5126 1.805945 GGTTAGCTGACTGGACGCG 60.806 63.158 3.53 3.53 0.00 6.01
4004 5180 1.402968 GCATTGCACACCAGAGGTATG 59.597 52.381 3.15 0.00 32.55 2.39
4141 5317 7.630082 ACCAGATAGCAACTACTCCAAAAATA 58.370 34.615 0.00 0.00 0.00 1.40
4165 5341 2.271944 AGTGGCCCACTACTTTGAAC 57.728 50.000 16.55 0.00 43.46 3.18
4178 5354 6.980397 CCATGATTAGATTTTGTAAAGTGGCC 59.020 38.462 0.00 0.00 0.00 5.36
4360 5537 5.334414 GCATAATGTGTGCAATAGAGGTAGC 60.334 44.000 0.00 0.00 42.08 3.58
4372 5549 2.292569 CAGGATCTGGCATAATGTGTGC 59.707 50.000 0.00 0.00 41.78 4.57
4489 5666 1.135139 AGCCTAGACGCATGTGTACTG 59.865 52.381 12.82 5.06 0.00 2.74
4523 5700 3.494332 AGCATCCTCTTTGACTTTGCTT 58.506 40.909 0.00 0.00 35.57 3.91
4599 5776 5.669164 TGAACTGTGTATATGTAGCACCA 57.331 39.130 0.00 0.00 32.62 4.17
4667 5844 4.746115 CAGCTTGCTCTTCTCTAATAGCAG 59.254 45.833 0.00 0.00 43.28 4.24
4801 5980 7.110155 CCTGCTAAAAGGGAGAACAGTTATTA 58.890 38.462 0.00 0.00 33.28 0.98
4843 6022 5.907207 TCACTATACCTCTCATTCAGTTGC 58.093 41.667 0.00 0.00 0.00 4.17
4857 6036 3.031736 TGTTCCTGCTCCTCACTATACC 58.968 50.000 0.00 0.00 0.00 2.73
5131 6310 3.797451 TCAAGCTGCAATGAAACAACA 57.203 38.095 1.02 0.00 0.00 3.33
5291 6470 1.745653 GAAGGACCTGCATTACAAGGC 59.254 52.381 0.00 0.00 36.03 4.35
5403 6582 2.484062 GGCATGGAACCCTGCATCG 61.484 63.158 19.24 0.00 40.18 3.84
5561 6740 6.900186 TGGATAGAGTTTCCATTCTCTCTCTT 59.100 38.462 0.00 0.00 40.78 2.85
5633 6812 6.567602 AAGGTTCTTATAGATTCTGTGCCT 57.432 37.500 0.00 0.00 0.00 4.75
5728 6907 7.689953 TCGTACAACTTGTTTCTTAGTTCTC 57.310 36.000 0.00 0.00 32.50 2.87
5805 6984 5.412594 TGTTTAGCTGAGCTTGACCAATAAG 59.587 40.000 14.14 0.00 40.44 1.73
5818 6997 6.566197 AAAAAGTCCATCTGTTTAGCTGAG 57.434 37.500 0.00 0.00 32.37 3.35
5897 7077 4.270084 AGGTGCATACGTTCATATTGTTCG 59.730 41.667 0.00 0.00 0.00 3.95
5906 7086 3.055747 TGTCCATAAGGTGCATACGTTCA 60.056 43.478 0.00 0.00 36.42 3.18
5941 7121 8.546597 AATATAATTTGTGCCCAAACTTGTTC 57.453 30.769 0.00 0.00 43.03 3.18
5942 7122 8.916628 AAATATAATTTGTGCCCAAACTTGTT 57.083 26.923 0.00 0.00 43.03 2.83
5993 7175 6.192970 AGGAATGATATAAAGGTGGTCTGG 57.807 41.667 0.00 0.00 0.00 3.86
5996 7178 8.822805 TGGTATAGGAATGATATAAAGGTGGTC 58.177 37.037 0.00 0.00 0.00 4.02
6020 7202 4.509616 TGGTAACGAAATATGTCACCTGG 58.490 43.478 0.00 0.00 42.51 4.45
6048 7230 4.058817 CTGGACTGTTAACCTGTTGAGAC 58.941 47.826 2.48 0.00 0.00 3.36
6134 7316 0.392336 AAGATCTGGCATCGAGGCTC 59.608 55.000 22.57 11.41 44.55 4.70
6159 7341 6.484308 CCAGCTTGTCCTTTGATTTGAATTTT 59.516 34.615 0.00 0.00 0.00 1.82
6175 7357 2.079925 GTCCACTTCATCCAGCTTGTC 58.920 52.381 0.00 0.00 0.00 3.18
6286 7468 4.867608 GCACTAGGAGAATCTCACAGTTTC 59.132 45.833 12.79 5.09 33.73 2.78
6304 7486 2.232696 TCTTGCCATCGTTACAGCACTA 59.767 45.455 0.00 0.00 34.37 2.74
6342 7524 1.356527 AACGCTTAATCGACACGGCC 61.357 55.000 5.60 0.00 0.00 6.13
6343 7525 0.441145 AAACGCTTAATCGACACGGC 59.559 50.000 5.60 0.00 0.00 5.68
6346 7528 3.060740 CCCGATAAACGCTTAATCGACAC 60.061 47.826 5.60 0.00 41.07 3.67
6350 7532 3.181774 CACTCCCGATAAACGCTTAATCG 59.818 47.826 0.00 0.00 41.07 3.34
6355 7537 2.754946 TTCACTCCCGATAAACGCTT 57.245 45.000 0.00 0.00 41.07 4.68
6366 7548 2.029918 GGAAGTGCAACATTTCACTCCC 60.030 50.000 0.00 0.00 42.19 4.30
6395 7577 3.498774 ACCCTACGATCAGGTACGTAT 57.501 47.619 0.00 0.00 42.52 3.06
6423 7605 2.501723 GCTTGTCCTCTACAATCCTGGA 59.498 50.000 0.00 0.00 46.81 3.86
6531 7722 8.933807 CATATATCTTCAGATTGAGAAACGCAT 58.066 33.333 0.00 0.00 36.05 4.73
6625 7816 9.317936 GCCTAAAATTGATTTCTCCCATTTTAG 57.682 33.333 12.65 12.65 39.69 1.85
6651 7842 0.817634 TGGACTGTTGCCGAACAAGG 60.818 55.000 0.00 0.00 41.62 3.61
6652 7843 0.307760 GTGGACTGTTGCCGAACAAG 59.692 55.000 0.00 0.00 41.62 3.16
6653 7844 0.107410 AGTGGACTGTTGCCGAACAA 60.107 50.000 0.00 0.00 41.62 2.83
6654 7845 0.531974 GAGTGGACTGTTGCCGAACA 60.532 55.000 0.00 0.00 39.88 3.18
6655 7846 1.228657 GGAGTGGACTGTTGCCGAAC 61.229 60.000 0.00 0.00 0.00 3.95
6656 7847 1.070786 GGAGTGGACTGTTGCCGAA 59.929 57.895 0.00 0.00 0.00 4.30
6657 7848 1.816863 GAGGAGTGGACTGTTGCCGA 61.817 60.000 0.00 0.00 0.00 5.54
6658 7849 1.374758 GAGGAGTGGACTGTTGCCG 60.375 63.158 0.00 0.00 0.00 5.69
6659 7850 1.003233 GGAGGAGTGGACTGTTGCC 60.003 63.158 0.00 0.00 0.00 4.52
6660 7851 0.321122 CTGGAGGAGTGGACTGTTGC 60.321 60.000 0.00 0.00 0.00 4.17
6661 7852 1.342074 TCTGGAGGAGTGGACTGTTG 58.658 55.000 0.00 0.00 0.00 3.33
6662 7853 1.694696 GTTCTGGAGGAGTGGACTGTT 59.305 52.381 0.00 0.00 0.00 3.16
6663 7854 1.343069 GTTCTGGAGGAGTGGACTGT 58.657 55.000 0.00 0.00 0.00 3.55
6664 7855 0.244994 CGTTCTGGAGGAGTGGACTG 59.755 60.000 0.00 0.00 0.00 3.51
6665 7856 0.900647 CCGTTCTGGAGGAGTGGACT 60.901 60.000 0.00 0.00 42.00 3.85
6666 7857 0.898789 TCCGTTCTGGAGGAGTGGAC 60.899 60.000 0.00 0.00 43.74 4.02
6667 7858 1.463375 TCCGTTCTGGAGGAGTGGA 59.537 57.895 0.00 0.00 43.74 4.02
6668 7859 4.113617 TCCGTTCTGGAGGAGTGG 57.886 61.111 0.00 0.00 43.74 4.00
6676 7867 2.125912 CACTCCGCTCCGTTCTGG 60.126 66.667 0.00 0.00 40.09 3.86
6677 7868 2.811317 GCACTCCGCTCCGTTCTG 60.811 66.667 0.00 0.00 37.77 3.02
6678 7869 4.070552 GGCACTCCGCTCCGTTCT 62.071 66.667 0.00 0.00 41.91 3.01
6679 7870 4.373116 TGGCACTCCGCTCCGTTC 62.373 66.667 0.00 0.00 41.91 3.95
6680 7871 4.379243 CTGGCACTCCGCTCCGTT 62.379 66.667 0.00 0.00 41.91 4.44
6683 7874 2.579684 CTAACCTGGCACTCCGCTCC 62.580 65.000 0.00 0.00 41.91 4.70
6684 7875 1.153549 CTAACCTGGCACTCCGCTC 60.154 63.158 0.00 0.00 41.91 5.03
6685 7876 2.982130 CTAACCTGGCACTCCGCT 59.018 61.111 0.00 0.00 41.91 5.52
6686 7877 2.820037 GCTAACCTGGCACTCCGC 60.820 66.667 0.00 0.00 41.28 5.54
6687 7878 1.448540 CTGCTAACCTGGCACTCCG 60.449 63.158 0.00 0.00 35.71 4.63
6688 7879 1.746991 GCTGCTAACCTGGCACTCC 60.747 63.158 0.00 0.00 35.71 3.85
6689 7880 0.742635 GAGCTGCTAACCTGGCACTC 60.743 60.000 0.15 0.00 35.71 3.51
6690 7881 1.298014 GAGCTGCTAACCTGGCACT 59.702 57.895 0.15 0.00 35.71 4.40
6691 7882 1.746991 GGAGCTGCTAACCTGGCAC 60.747 63.158 0.15 0.00 35.71 5.01
6692 7883 2.671070 GGAGCTGCTAACCTGGCA 59.329 61.111 0.15 0.00 38.10 4.92
6693 7884 2.124529 GGGAGCTGCTAACCTGGC 60.125 66.667 13.82 0.00 0.00 4.85
6694 7885 1.852157 TTGGGGAGCTGCTAACCTGG 61.852 60.000 19.06 0.00 0.00 4.45
6695 7886 0.038166 TTTGGGGAGCTGCTAACCTG 59.962 55.000 19.06 0.00 0.00 4.00
6696 7887 1.002857 ATTTGGGGAGCTGCTAACCT 58.997 50.000 19.06 1.32 0.00 3.50
6697 7888 1.852633 AATTTGGGGAGCTGCTAACC 58.147 50.000 0.15 8.72 0.00 2.85
6698 7889 3.352648 TGTAATTTGGGGAGCTGCTAAC 58.647 45.455 0.15 0.00 0.00 2.34
6699 7890 3.730215 TGTAATTTGGGGAGCTGCTAA 57.270 42.857 0.15 0.00 0.00 3.09
6700 7891 3.010138 AGTTGTAATTTGGGGAGCTGCTA 59.990 43.478 0.15 0.00 0.00 3.49
6701 7892 2.171003 GTTGTAATTTGGGGAGCTGCT 58.829 47.619 0.00 0.00 0.00 4.24
6702 7893 2.171003 AGTTGTAATTTGGGGAGCTGC 58.829 47.619 0.00 0.00 0.00 5.25
6703 7894 4.331968 TGTAGTTGTAATTTGGGGAGCTG 58.668 43.478 0.00 0.00 0.00 4.24
6704 7895 4.650972 TGTAGTTGTAATTTGGGGAGCT 57.349 40.909 0.00 0.00 0.00 4.09
6705 7896 4.440112 GCATGTAGTTGTAATTTGGGGAGC 60.440 45.833 0.00 0.00 0.00 4.70
6706 7897 4.097892 GGCATGTAGTTGTAATTTGGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
6707 7898 4.020543 GGCATGTAGTTGTAATTTGGGGA 58.979 43.478 0.00 0.00 0.00 4.81
6708 7899 3.181491 CGGCATGTAGTTGTAATTTGGGG 60.181 47.826 0.00 0.00 0.00 4.96
6709 7900 3.733684 GCGGCATGTAGTTGTAATTTGGG 60.734 47.826 0.00 0.00 0.00 4.12
6710 7901 3.128589 AGCGGCATGTAGTTGTAATTTGG 59.871 43.478 1.45 0.00 0.00 3.28
6711 7902 4.355543 AGCGGCATGTAGTTGTAATTTG 57.644 40.909 1.45 0.00 0.00 2.32
6712 7903 4.436852 CGAAGCGGCATGTAGTTGTAATTT 60.437 41.667 1.45 0.00 0.00 1.82
6713 7904 3.063452 CGAAGCGGCATGTAGTTGTAATT 59.937 43.478 1.45 0.00 0.00 1.40
6714 7905 2.607635 CGAAGCGGCATGTAGTTGTAAT 59.392 45.455 1.45 0.00 0.00 1.89
6715 7906 1.996898 CGAAGCGGCATGTAGTTGTAA 59.003 47.619 1.45 0.00 0.00 2.41
6716 7907 1.635844 CGAAGCGGCATGTAGTTGTA 58.364 50.000 1.45 0.00 0.00 2.41
6717 7908 1.019278 CCGAAGCGGCATGTAGTTGT 61.019 55.000 1.45 0.00 41.17 3.32
6718 7909 1.715585 CCGAAGCGGCATGTAGTTG 59.284 57.895 1.45 0.00 41.17 3.16
6719 7910 4.201951 CCGAAGCGGCATGTAGTT 57.798 55.556 1.45 0.00 41.17 2.24
6741 7932 4.821589 CCCTCCGCTCCGCAACTC 62.822 72.222 0.00 0.00 0.00 3.01
6743 7934 3.682292 AATCCCTCCGCTCCGCAAC 62.682 63.158 0.00 0.00 0.00 4.17
6744 7935 3.385749 GAATCCCTCCGCTCCGCAA 62.386 63.158 0.00 0.00 0.00 4.85
6745 7936 3.849951 GAATCCCTCCGCTCCGCA 61.850 66.667 0.00 0.00 0.00 5.69
6746 7937 4.610714 GGAATCCCTCCGCTCCGC 62.611 72.222 0.00 0.00 33.37 5.54
6753 7944 2.713708 AGAGCCTATTTGGAATCCCTCC 59.286 50.000 0.00 0.00 45.64 4.30
6754 7945 4.445557 AAGAGCCTATTTGGAATCCCTC 57.554 45.455 0.00 0.00 38.35 4.30
6755 7946 5.227593 TCTAAGAGCCTATTTGGAATCCCT 58.772 41.667 0.00 0.00 38.35 4.20
6756 7947 5.555966 CTCTAAGAGCCTATTTGGAATCCC 58.444 45.833 0.00 0.00 38.35 3.85
6771 7962 4.202010 GGTCTGCTAGAGTTGCTCTAAGAG 60.202 50.000 7.22 6.20 41.74 2.85
6772 7963 3.697045 GGTCTGCTAGAGTTGCTCTAAGA 59.303 47.826 7.22 5.68 41.74 2.10
6773 7964 3.181480 GGGTCTGCTAGAGTTGCTCTAAG 60.181 52.174 7.22 3.73 41.74 2.18
6774 7965 2.761208 GGGTCTGCTAGAGTTGCTCTAA 59.239 50.000 7.22 0.00 41.74 2.10
6775 7966 2.024846 AGGGTCTGCTAGAGTTGCTCTA 60.025 50.000 0.00 5.84 41.50 2.43
6776 7967 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
6777 7968 1.134848 CAGGGTCTGCTAGAGTTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
6778 7969 0.901124 CAGGGTCTGCTAGAGTTGCT 59.099 55.000 0.00 0.00 0.00 3.91
6779 7970 0.610687 ACAGGGTCTGCTAGAGTTGC 59.389 55.000 0.00 0.00 34.37 4.17
6780 7971 4.537135 TTTACAGGGTCTGCTAGAGTTG 57.463 45.455 0.00 0.00 34.37 3.16
6781 7972 4.593634 ACTTTTACAGGGTCTGCTAGAGTT 59.406 41.667 0.00 0.00 34.37 3.01
6782 7973 4.161102 ACTTTTACAGGGTCTGCTAGAGT 58.839 43.478 0.00 0.00 34.37 3.24
6783 7974 4.675671 CGACTTTTACAGGGTCTGCTAGAG 60.676 50.000 0.00 0.00 34.37 2.43
6784 7975 3.192844 CGACTTTTACAGGGTCTGCTAGA 59.807 47.826 0.00 0.00 34.37 2.43
6785 7976 3.512680 CGACTTTTACAGGGTCTGCTAG 58.487 50.000 0.00 0.00 34.37 3.42
6786 7977 2.353406 GCGACTTTTACAGGGTCTGCTA 60.353 50.000 0.00 0.00 34.37 3.49
6787 7978 1.608283 GCGACTTTTACAGGGTCTGCT 60.608 52.381 0.00 0.00 34.37 4.24
6788 7979 0.796927 GCGACTTTTACAGGGTCTGC 59.203 55.000 0.00 0.00 34.37 4.26
6789 7980 2.163818 TGCGACTTTTACAGGGTCTG 57.836 50.000 0.00 0.00 37.52 3.51
6790 7981 2.876550 GTTTGCGACTTTTACAGGGTCT 59.123 45.455 0.00 0.00 0.00 3.85
6791 7982 2.031420 GGTTTGCGACTTTTACAGGGTC 60.031 50.000 0.00 0.00 0.00 4.46
6792 7983 1.951602 GGTTTGCGACTTTTACAGGGT 59.048 47.619 0.00 0.00 0.00 4.34
6793 7984 1.268625 GGGTTTGCGACTTTTACAGGG 59.731 52.381 0.00 0.00 0.00 4.45
6794 7985 1.069500 CGGGTTTGCGACTTTTACAGG 60.069 52.381 0.00 0.00 0.00 4.00
6795 7986 1.662026 GCGGGTTTGCGACTTTTACAG 60.662 52.381 0.00 0.00 0.00 2.74
6796 7987 0.308376 GCGGGTTTGCGACTTTTACA 59.692 50.000 0.00 0.00 0.00 2.41
6797 7988 0.308376 TGCGGGTTTGCGACTTTTAC 59.692 50.000 0.00 0.00 37.81 2.01
6798 7989 1.022735 TTGCGGGTTTGCGACTTTTA 58.977 45.000 0.00 0.00 37.81 1.52
6799 7990 0.173708 TTTGCGGGTTTGCGACTTTT 59.826 45.000 0.00 0.00 37.81 2.27
6800 7991 0.173708 TTTTGCGGGTTTGCGACTTT 59.826 45.000 0.00 0.00 37.81 2.66
6801 7992 0.387565 ATTTTGCGGGTTTGCGACTT 59.612 45.000 0.00 0.00 37.81 3.01
6802 7993 0.387565 AATTTTGCGGGTTTGCGACT 59.612 45.000 0.00 0.00 37.81 4.18
6803 7994 0.781787 GAATTTTGCGGGTTTGCGAC 59.218 50.000 0.00 0.00 37.81 5.19
6804 7995 0.319125 GGAATTTTGCGGGTTTGCGA 60.319 50.000 0.00 0.00 37.81 5.10
6805 7996 1.613347 CGGAATTTTGCGGGTTTGCG 61.613 55.000 0.00 0.00 38.41 4.85
6806 7997 2.149555 CGGAATTTTGCGGGTTTGC 58.850 52.632 0.00 0.00 38.41 3.68
6814 8005 2.348218 CGTATACTCGCCGGAATTTTGC 60.348 50.000 5.05 0.00 0.00 3.68
6815 8006 2.220133 CCGTATACTCGCCGGAATTTTG 59.780 50.000 5.05 0.00 44.41 2.44
6816 8007 2.476821 CCGTATACTCGCCGGAATTTT 58.523 47.619 5.05 0.00 44.41 1.82
6817 8008 1.269936 CCCGTATACTCGCCGGAATTT 60.270 52.381 5.05 0.00 44.41 1.82
6818 8009 0.316204 CCCGTATACTCGCCGGAATT 59.684 55.000 5.05 0.00 44.41 2.17
6819 8010 0.825010 ACCCGTATACTCGCCGGAAT 60.825 55.000 5.05 0.00 44.41 3.01
6820 8011 1.037030 AACCCGTATACTCGCCGGAA 61.037 55.000 5.05 0.00 44.41 4.30
6821 8012 1.447317 GAACCCGTATACTCGCCGGA 61.447 60.000 5.05 0.00 44.41 5.14
6822 8013 1.008079 GAACCCGTATACTCGCCGG 60.008 63.158 0.00 0.00 41.37 6.13
6823 8014 1.369689 CGAACCCGTATACTCGCCG 60.370 63.158 0.56 0.00 0.00 6.46
6824 8015 1.008079 CCGAACCCGTATACTCGCC 60.008 63.158 6.71 0.00 0.00 5.54
6825 8016 1.659644 GCCGAACCCGTATACTCGC 60.660 63.158 6.71 0.74 0.00 5.03
6826 8017 1.008079 GGCCGAACCCGTATACTCG 60.008 63.158 0.56 3.44 0.00 4.18
6849 8040 1.408969 GGGTCTGTTCTGGCCAAAAA 58.591 50.000 7.01 0.62 0.00 1.94
6850 8041 0.821711 CGGGTCTGTTCTGGCCAAAA 60.822 55.000 7.01 0.00 0.00 2.44
6851 8042 1.228124 CGGGTCTGTTCTGGCCAAA 60.228 57.895 7.01 1.05 0.00 3.28
6852 8043 1.122632 TACGGGTCTGTTCTGGCCAA 61.123 55.000 7.01 0.00 0.00 4.52
6853 8044 0.907704 ATACGGGTCTGTTCTGGCCA 60.908 55.000 4.71 4.71 0.00 5.36
6854 8045 1.117150 TATACGGGTCTGTTCTGGCC 58.883 55.000 0.00 0.00 0.00 5.36
6855 8046 1.755380 AGTATACGGGTCTGTTCTGGC 59.245 52.381 0.00 0.00 0.00 4.85
6856 8047 3.782046 CAAGTATACGGGTCTGTTCTGG 58.218 50.000 0.00 0.00 0.00 3.86
6857 8048 3.187700 GCAAGTATACGGGTCTGTTCTG 58.812 50.000 0.00 0.00 0.00 3.02
6858 8049 2.167900 GGCAAGTATACGGGTCTGTTCT 59.832 50.000 0.00 0.00 0.00 3.01
6859 8050 2.547826 GGCAAGTATACGGGTCTGTTC 58.452 52.381 0.00 0.00 0.00 3.18
6860 8051 1.208776 GGGCAAGTATACGGGTCTGTT 59.791 52.381 0.00 0.00 0.00 3.16
6861 8052 0.828677 GGGCAAGTATACGGGTCTGT 59.171 55.000 0.00 0.00 0.00 3.41
6862 8053 0.828022 TGGGCAAGTATACGGGTCTG 59.172 55.000 0.00 0.00 0.00 3.51
6863 8054 1.120530 CTGGGCAAGTATACGGGTCT 58.879 55.000 0.00 0.00 0.00 3.85
6864 8055 0.828677 ACTGGGCAAGTATACGGGTC 59.171 55.000 0.00 0.00 37.36 4.46
6865 8056 0.828677 GACTGGGCAAGTATACGGGT 59.171 55.000 0.00 0.00 40.07 5.28
6866 8057 0.106149 GGACTGGGCAAGTATACGGG 59.894 60.000 0.00 0.00 40.07 5.28
6867 8058 0.828022 TGGACTGGGCAAGTATACGG 59.172 55.000 0.00 0.00 40.07 4.02
6868 8059 2.910688 ATGGACTGGGCAAGTATACG 57.089 50.000 0.00 0.00 40.07 3.06
6869 8060 5.031066 TGTTATGGACTGGGCAAGTATAC 57.969 43.478 0.00 0.00 40.07 1.47
6870 8061 5.702065 TTGTTATGGACTGGGCAAGTATA 57.298 39.130 0.00 0.00 40.07 1.47
6871 8062 4.584638 TTGTTATGGACTGGGCAAGTAT 57.415 40.909 0.00 0.00 40.07 2.12
6872 8063 4.374689 TTTGTTATGGACTGGGCAAGTA 57.625 40.909 0.00 0.00 40.07 2.24
6873 8064 2.969821 TTGTTATGGACTGGGCAAGT 57.030 45.000 0.00 0.00 43.85 3.16
6874 8065 4.806640 ATTTTGTTATGGACTGGGCAAG 57.193 40.909 0.00 0.00 0.00 4.01
6875 8066 5.559148 AAATTTTGTTATGGACTGGGCAA 57.441 34.783 0.00 0.00 0.00 4.52
6876 8067 5.777732 AGTAAATTTTGTTATGGACTGGGCA 59.222 36.000 0.00 0.00 0.00 5.36
6877 8068 6.099341 CAGTAAATTTTGTTATGGACTGGGC 58.901 40.000 0.00 0.00 31.52 5.36
6878 8069 6.099341 GCAGTAAATTTTGTTATGGACTGGG 58.901 40.000 12.85 0.00 34.88 4.45
6879 8070 5.799936 CGCAGTAAATTTTGTTATGGACTGG 59.200 40.000 12.85 3.20 34.88 4.00
6880 8071 5.799936 CCGCAGTAAATTTTGTTATGGACTG 59.200 40.000 0.00 2.60 36.88 3.51
6881 8072 5.621329 GCCGCAGTAAATTTTGTTATGGACT 60.621 40.000 0.00 0.00 0.00 3.85
6882 8073 4.561213 GCCGCAGTAAATTTTGTTATGGAC 59.439 41.667 0.00 0.00 0.00 4.02
6883 8074 4.381079 GGCCGCAGTAAATTTTGTTATGGA 60.381 41.667 0.00 0.00 0.00 3.41
6884 8075 3.862845 GGCCGCAGTAAATTTTGTTATGG 59.137 43.478 0.00 0.00 0.00 2.74
6885 8076 4.562394 CAGGCCGCAGTAAATTTTGTTATG 59.438 41.667 0.00 0.00 0.00 1.90
6886 8077 4.743493 CAGGCCGCAGTAAATTTTGTTAT 58.257 39.130 0.00 0.00 0.00 1.89
6887 8078 3.612955 GCAGGCCGCAGTAAATTTTGTTA 60.613 43.478 13.61 0.00 41.79 2.41
6888 8079 2.866065 GCAGGCCGCAGTAAATTTTGTT 60.866 45.455 13.61 0.00 41.79 2.83
6889 8080 1.336795 GCAGGCCGCAGTAAATTTTGT 60.337 47.619 13.61 0.00 41.79 2.83
6890 8081 1.349234 GCAGGCCGCAGTAAATTTTG 58.651 50.000 13.61 0.00 41.79 2.44
6891 8082 3.812577 GCAGGCCGCAGTAAATTTT 57.187 47.368 13.61 0.00 41.79 1.82
6921 8112 2.233922 CCGTAGATATACTGCTTGGGGG 59.766 54.545 0.00 0.00 0.00 5.40
6922 8113 2.233922 CCCGTAGATATACTGCTTGGGG 59.766 54.545 0.00 0.00 31.82 4.96
6923 8114 2.897969 ACCCGTAGATATACTGCTTGGG 59.102 50.000 6.02 6.02 37.68 4.12
6924 8115 4.557205 GAACCCGTAGATATACTGCTTGG 58.443 47.826 0.00 0.00 0.00 3.61
6925 8116 4.227538 CGAACCCGTAGATATACTGCTTG 58.772 47.826 0.00 0.00 0.00 4.01
6926 8117 4.500603 CGAACCCGTAGATATACTGCTT 57.499 45.455 0.00 0.00 0.00 3.91
6938 8129 2.544277 GCATATGCACTACGAACCCGTA 60.544 50.000 22.84 0.00 43.64 4.02
6939 8130 1.805120 GCATATGCACTACGAACCCGT 60.805 52.381 22.84 0.00 45.72 5.28
6940 8131 0.859232 GCATATGCACTACGAACCCG 59.141 55.000 22.84 0.00 41.59 5.28
6941 8132 0.859232 CGCATATGCACTACGAACCC 59.141 55.000 26.52 0.00 42.21 4.11
6942 8133 0.859232 CCGCATATGCACTACGAACC 59.141 55.000 26.52 0.00 42.21 3.62
6943 8134 0.859232 CCCGCATATGCACTACGAAC 59.141 55.000 26.52 0.00 42.21 3.95
6944 8135 0.462375 ACCCGCATATGCACTACGAA 59.538 50.000 26.52 0.00 42.21 3.85
6945 8136 0.031585 GACCCGCATATGCACTACGA 59.968 55.000 26.52 0.00 42.21 3.43
6946 8137 1.275471 CGACCCGCATATGCACTACG 61.275 60.000 26.52 20.31 42.21 3.51
6947 8138 0.031585 TCGACCCGCATATGCACTAC 59.968 55.000 26.52 13.65 42.21 2.73
6948 8139 0.747852 TTCGACCCGCATATGCACTA 59.252 50.000 26.52 5.15 42.21 2.74
6949 8140 0.107897 TTTCGACCCGCATATGCACT 60.108 50.000 26.52 8.40 42.21 4.40
6950 8141 0.027586 GTTTCGACCCGCATATGCAC 59.972 55.000 26.52 11.17 42.21 4.57
6951 8142 1.092921 GGTTTCGACCCGCATATGCA 61.093 55.000 26.52 3.70 42.21 3.96
6952 8143 1.647084 GGTTTCGACCCGCATATGC 59.353 57.895 18.08 18.08 37.78 3.14
6953 8144 2.317230 GGGTTTCGACCCGCATATG 58.683 57.895 0.00 0.00 40.59 1.78
6954 8145 4.870190 GGGTTTCGACCCGCATAT 57.130 55.556 0.00 0.00 40.59 1.78
6961 8152 1.834996 GGGGGATAGGGTTTCGACC 59.165 63.158 0.00 0.00 0.00 4.79
6962 8153 1.444672 CGGGGGATAGGGTTTCGAC 59.555 63.158 0.00 0.00 0.00 4.20
6963 8154 2.437396 GCGGGGGATAGGGTTTCGA 61.437 63.158 0.00 0.00 0.00 3.71
6964 8155 2.110420 GCGGGGGATAGGGTTTCG 59.890 66.667 0.00 0.00 0.00 3.46
6965 8156 2.514395 GGCGGGGGATAGGGTTTC 59.486 66.667 0.00 0.00 0.00 2.78
6966 8157 3.485745 CGGCGGGGGATAGGGTTT 61.486 66.667 0.00 0.00 0.00 3.27
6987 8178 2.464459 GGGGAATTGCAGCGAGTCG 61.464 63.158 8.54 8.54 0.00 4.18
6988 8179 1.377202 TGGGGAATTGCAGCGAGTC 60.377 57.895 1.04 1.04 0.00 3.36
6989 8180 1.675641 GTGGGGAATTGCAGCGAGT 60.676 57.895 0.00 0.00 0.00 4.18
6990 8181 1.372087 GAGTGGGGAATTGCAGCGAG 61.372 60.000 0.00 0.00 0.00 5.03
6991 8182 1.377202 GAGTGGGGAATTGCAGCGA 60.377 57.895 0.00 0.00 0.00 4.93
6992 8183 2.409870 GGAGTGGGGAATTGCAGCG 61.410 63.158 0.00 0.00 0.00 5.18
6993 8184 2.054453 GGGAGTGGGGAATTGCAGC 61.054 63.158 0.00 0.00 0.00 5.25
6994 8185 1.380380 GGGGAGTGGGGAATTGCAG 60.380 63.158 0.00 0.00 0.00 4.41
6995 8186 1.856873 AGGGGAGTGGGGAATTGCA 60.857 57.895 0.00 0.00 0.00 4.08
6996 8187 1.076705 GAGGGGAGTGGGGAATTGC 60.077 63.158 0.00 0.00 0.00 3.56
6997 8188 0.034089 GTGAGGGGAGTGGGGAATTG 60.034 60.000 0.00 0.00 0.00 2.32
6998 8189 0.477597 TGTGAGGGGAGTGGGGAATT 60.478 55.000 0.00 0.00 0.00 2.17
6999 8190 0.253820 ATGTGAGGGGAGTGGGGAAT 60.254 55.000 0.00 0.00 0.00 3.01
7000 8191 0.477597 AATGTGAGGGGAGTGGGGAA 60.478 55.000 0.00 0.00 0.00 3.97
7001 8192 0.477597 AAATGTGAGGGGAGTGGGGA 60.478 55.000 0.00 0.00 0.00 4.81
7002 8193 0.034089 GAAATGTGAGGGGAGTGGGG 60.034 60.000 0.00 0.00 0.00 4.96
7003 8194 0.995024 AGAAATGTGAGGGGAGTGGG 59.005 55.000 0.00 0.00 0.00 4.61
7004 8195 1.406069 CGAGAAATGTGAGGGGAGTGG 60.406 57.143 0.00 0.00 0.00 4.00
7005 8196 2.009042 GCGAGAAATGTGAGGGGAGTG 61.009 57.143 0.00 0.00 0.00 3.51
7006 8197 0.250513 GCGAGAAATGTGAGGGGAGT 59.749 55.000 0.00 0.00 0.00 3.85
7007 8198 0.462759 GGCGAGAAATGTGAGGGGAG 60.463 60.000 0.00 0.00 0.00 4.30
7008 8199 1.602237 GGCGAGAAATGTGAGGGGA 59.398 57.895 0.00 0.00 0.00 4.81
7009 8200 1.815421 CGGCGAGAAATGTGAGGGG 60.815 63.158 0.00 0.00 0.00 4.79
7010 8201 2.464459 GCGGCGAGAAATGTGAGGG 61.464 63.158 12.98 0.00 0.00 4.30
7011 8202 2.464459 GGCGGCGAGAAATGTGAGG 61.464 63.158 12.98 0.00 0.00 3.86
7012 8203 2.802667 CGGCGGCGAGAAATGTGAG 61.803 63.158 29.19 0.00 0.00 3.51
7013 8204 2.813474 CGGCGGCGAGAAATGTGA 60.813 61.111 29.19 0.00 0.00 3.58
7014 8205 3.864686 CCGGCGGCGAGAAATGTG 61.865 66.667 34.49 9.47 0.00 3.21
7015 8206 4.388499 ACCGGCGGCGAGAAATGT 62.388 61.111 34.49 17.98 0.00 2.71
7016 8207 3.864686 CACCGGCGGCGAGAAATG 61.865 66.667 34.49 17.25 0.00 2.32
7017 8208 4.077184 TCACCGGCGGCGAGAAAT 62.077 61.111 34.49 9.59 0.00 2.17
7018 8209 4.735132 CTCACCGGCGGCGAGAAA 62.735 66.667 34.22 13.82 34.10 2.52
7063 8254 3.512516 GAAGCTCCACATGCGGCC 61.513 66.667 0.00 0.00 35.28 6.13
7064 8255 3.869272 CGAAGCTCCACATGCGGC 61.869 66.667 0.00 0.00 35.28 6.53
7065 8256 3.197790 CCGAAGCTCCACATGCGG 61.198 66.667 0.00 0.00 35.28 5.69
7066 8257 3.869272 GCCGAAGCTCCACATGCG 61.869 66.667 0.00 0.00 35.50 4.73
7067 8258 3.512516 GGCCGAAGCTCCACATGC 61.513 66.667 0.00 0.00 39.73 4.06
7068 8259 3.197790 CGGCCGAAGCTCCACATG 61.198 66.667 24.07 0.00 39.73 3.21
7140 8331 4.813526 CTCGCGTCGTCCGAGTGG 62.814 72.222 5.77 0.00 45.17 4.00
7144 8335 3.796443 CTTCCTCGCGTCGTCCGA 61.796 66.667 5.77 0.00 39.56 4.55
7145 8336 4.099170 ACTTCCTCGCGTCGTCCG 62.099 66.667 5.77 0.00 40.40 4.79
7146 8337 2.504244 CACTTCCTCGCGTCGTCC 60.504 66.667 5.77 0.00 0.00 4.79
7147 8338 3.173240 GCACTTCCTCGCGTCGTC 61.173 66.667 5.77 0.00 0.00 4.20
7154 8345 4.116328 TCGCTCCGCACTTCCTCG 62.116 66.667 0.00 0.00 0.00 4.63
7155 8346 2.202676 CTCGCTCCGCACTTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
7156 8347 3.764466 CCTCGCTCCGCACTTCCT 61.764 66.667 0.00 0.00 0.00 3.36
7157 8348 3.296709 TTCCTCGCTCCGCACTTCC 62.297 63.158 0.00 0.00 0.00 3.46
7158 8349 1.807573 CTTCCTCGCTCCGCACTTC 60.808 63.158 0.00 0.00 0.00 3.01
7159 8350 2.262915 CTTCCTCGCTCCGCACTT 59.737 61.111 0.00 0.00 0.00 3.16
7160 8351 2.992114 ACTTCCTCGCTCCGCACT 60.992 61.111 0.00 0.00 0.00 4.40
7161 8352 2.811317 CACTTCCTCGCTCCGCAC 60.811 66.667 0.00 0.00 0.00 5.34
7162 8353 4.069232 CCACTTCCTCGCTCCGCA 62.069 66.667 0.00 0.00 0.00 5.69
7163 8354 3.760035 TCCACTTCCTCGCTCCGC 61.760 66.667 0.00 0.00 0.00 5.54
7164 8355 2.154798 TTGTCCACTTCCTCGCTCCG 62.155 60.000 0.00 0.00 0.00 4.63
7165 8356 0.034896 TTTGTCCACTTCCTCGCTCC 59.965 55.000 0.00 0.00 0.00 4.70
7166 8357 1.149148 GTTTGTCCACTTCCTCGCTC 58.851 55.000 0.00 0.00 0.00 5.03
7167 8358 0.468226 TGTTTGTCCACTTCCTCGCT 59.532 50.000 0.00 0.00 0.00 4.93
7168 8359 1.264288 CTTGTTTGTCCACTTCCTCGC 59.736 52.381 0.00 0.00 0.00 5.03
7169 8360 1.873591 CCTTGTTTGTCCACTTCCTCG 59.126 52.381 0.00 0.00 0.00 4.63
7170 8361 2.230660 CCCTTGTTTGTCCACTTCCTC 58.769 52.381 0.00 0.00 0.00 3.71
7171 8362 1.754201 GCCCTTGTTTGTCCACTTCCT 60.754 52.381 0.00 0.00 0.00 3.36
7172 8363 0.673985 GCCCTTGTTTGTCCACTTCC 59.326 55.000 0.00 0.00 0.00 3.46
7173 8364 0.673985 GGCCCTTGTTTGTCCACTTC 59.326 55.000 0.00 0.00 0.00 3.01
7174 8365 0.261696 AGGCCCTTGTTTGTCCACTT 59.738 50.000 0.00 0.00 0.00 3.16
7175 8366 0.178990 GAGGCCCTTGTTTGTCCACT 60.179 55.000 0.00 0.00 0.00 4.00
7176 8367 1.515521 CGAGGCCCTTGTTTGTCCAC 61.516 60.000 0.00 0.00 0.00 4.02
7177 8368 1.228124 CGAGGCCCTTGTTTGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
7178 8369 1.072505 TCGAGGCCCTTGTTTGTCC 59.927 57.895 0.00 0.00 0.00 4.02
7179 8370 0.250338 AGTCGAGGCCCTTGTTTGTC 60.250 55.000 0.00 0.00 0.00 3.18
7180 8371 0.250338 GAGTCGAGGCCCTTGTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
7181 8372 1.291877 CGAGTCGAGGCCCTTGTTTG 61.292 60.000 6.73 0.00 0.00 2.93
7182 8373 1.004918 CGAGTCGAGGCCCTTGTTT 60.005 57.895 6.73 0.00 0.00 2.83
7183 8374 2.657237 CGAGTCGAGGCCCTTGTT 59.343 61.111 6.73 0.00 0.00 2.83
7184 8375 4.070552 GCGAGTCGAGGCCCTTGT 62.071 66.667 18.61 0.00 0.00 3.16
7185 8376 4.821589 GGCGAGTCGAGGCCCTTG 62.822 72.222 18.61 0.00 43.64 3.61
7191 8382 4.544689 CTCAGCGGCGAGTCGAGG 62.545 72.222 18.61 7.85 0.00 4.63
7194 8385 4.785512 AAGCTCAGCGGCGAGTCG 62.786 66.667 12.98 8.54 35.33 4.18
7195 8386 2.883253 GAAGCTCAGCGGCGAGTC 60.883 66.667 12.98 12.57 35.33 3.36
7196 8387 4.443266 GGAAGCTCAGCGGCGAGT 62.443 66.667 12.98 0.00 35.33 4.18
7197 8388 4.140599 AGGAAGCTCAGCGGCGAG 62.141 66.667 12.98 14.58 37.29 5.03
7198 8389 4.135153 GAGGAAGCTCAGCGGCGA 62.135 66.667 12.98 0.00 37.29 5.54
7200 8391 4.443266 ACGAGGAAGCTCAGCGGC 62.443 66.667 0.00 0.00 0.00 6.53
7201 8392 2.202676 GACGAGGAAGCTCAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
7202 8393 2.202676 GGACGAGGAAGCTCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
7203 8394 2.202676 CGGACGAGGAAGCTCAGC 60.203 66.667 0.00 0.00 0.00 4.26
7204 8395 2.202676 GCGGACGAGGAAGCTCAG 60.203 66.667 0.00 0.00 0.00 3.35
7205 8396 4.116328 CGCGGACGAGGAAGCTCA 62.116 66.667 0.00 0.00 43.93 4.26
7206 8397 3.812019 TCGCGGACGAGGAAGCTC 61.812 66.667 6.13 0.00 45.12 4.09
7219 8410 1.368969 CGTATTCCTCCGTCTCGCG 60.369 63.158 0.00 0.00 40.95 5.87
7220 8411 0.316854 GTCGTATTCCTCCGTCTCGC 60.317 60.000 0.00 0.00 0.00 5.03
7221 8412 0.307146 GGTCGTATTCCTCCGTCTCG 59.693 60.000 0.00 0.00 0.00 4.04
7222 8413 0.307146 CGGTCGTATTCCTCCGTCTC 59.693 60.000 0.00 0.00 38.45 3.36
7223 8414 2.401967 CGGTCGTATTCCTCCGTCT 58.598 57.895 0.00 0.00 38.45 4.18
7226 8417 0.029035 CTGACGGTCGTATTCCTCCG 59.971 60.000 3.34 0.00 46.98 4.63
7227 8418 0.248949 GCTGACGGTCGTATTCCTCC 60.249 60.000 3.34 0.00 0.00 4.30
7228 8419 0.454600 TGCTGACGGTCGTATTCCTC 59.545 55.000 3.34 0.00 0.00 3.71
7229 8420 0.172803 GTGCTGACGGTCGTATTCCT 59.827 55.000 3.34 0.00 0.00 3.36
7230 8421 1.138047 CGTGCTGACGGTCGTATTCC 61.138 60.000 3.34 0.00 42.18 3.01
7231 8422 2.275703 CGTGCTGACGGTCGTATTC 58.724 57.895 3.34 0.00 42.18 1.75
7232 8423 4.470876 CGTGCTGACGGTCGTATT 57.529 55.556 3.34 0.00 42.18 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.