Multiple sequence alignment - TraesCS4D01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G203600 chr4D 100.000 8975 0 0 1 8975 350509575 350500601 0.000000e+00 16574.0
1 TraesCS4D01G203600 chr4D 94.737 171 9 0 600 770 93338036 93338206 5.340000e-67 267.0
2 TraesCS4D01G203600 chr4D 93.333 180 8 4 592 771 6588418 6588593 6.910000e-66 263.0
3 TraesCS4D01G203600 chr4D 87.302 63 4 4 821 881 350508711 350508651 1.620000e-07 69.4
4 TraesCS4D01G203600 chr4D 87.302 63 4 4 865 925 350508755 350508695 1.620000e-07 69.4
5 TraesCS4D01G203600 chr4B 95.547 8309 196 58 770 8975 433653363 433645126 0.000000e+00 13134.0
6 TraesCS4D01G203600 chr4B 89.529 191 17 3 143 331 433653661 433653472 1.160000e-58 239.0
7 TraesCS4D01G203600 chr4B 90.476 84 7 1 3 86 433653928 433653846 9.530000e-20 110.0
8 TraesCS4D01G203600 chr4B 85.714 84 7 5 844 925 433653323 433653243 5.770000e-12 84.2
9 TraesCS4D01G203600 chr4B 85.507 69 6 4 821 887 433653259 433653193 1.620000e-07 69.4
10 TraesCS4D01G203600 chr4A 97.786 2981 38 10 3574 6549 114583323 114586280 0.000000e+00 5114.0
11 TraesCS4D01G203600 chr4A 94.500 2600 56 24 1019 3577 114580641 114583194 0.000000e+00 3928.0
12 TraesCS4D01G203600 chr4A 97.889 1137 22 2 6556 7690 114586471 114587607 0.000000e+00 1965.0
13 TraesCS4D01G203600 chr4A 85.548 429 32 5 8559 8975 114588256 114588666 1.080000e-113 422.0
14 TraesCS4D01G203600 chr4A 78.882 161 21 10 6214 6372 539991633 539991484 7.420000e-16 97.1
15 TraesCS4D01G203600 chr4A 86.207 87 5 7 843 925 114580056 114580139 4.460000e-13 87.9
16 TraesCS4D01G203600 chr2D 82.143 504 62 11 5685 6175 74120871 74120383 3.020000e-109 407.0
17 TraesCS4D01G203600 chr2D 83.934 361 40 7 5809 6166 73912672 73913017 6.720000e-86 329.0
18 TraesCS4D01G203600 chr2D 94.118 102 3 1 2648 2749 461076406 461076308 1.560000e-32 152.0
19 TraesCS4D01G203600 chr2D 92.308 65 3 2 2775 2838 13914902 13914965 3.450000e-14 91.6
20 TraesCS4D01G203600 chr7B 84.986 353 37 3 5524 5876 357979695 357979359 2.400000e-90 344.0
21 TraesCS4D01G203600 chr1D 95.783 166 7 0 606 771 36612133 36612298 1.490000e-67 268.0
22 TraesCS4D01G203600 chr1D 94.186 172 10 0 600 771 238940386 238940215 6.910000e-66 263.0
23 TraesCS4D01G203600 chr3B 94.706 170 9 0 601 770 62969926 62970095 1.920000e-66 265.0
24 TraesCS4D01G203600 chr3A 93.258 178 12 0 595 772 585605813 585605636 6.910000e-66 263.0
25 TraesCS4D01G203600 chr3A 81.364 220 33 3 3 221 63845719 63845931 1.200000e-38 172.0
26 TraesCS4D01G203600 chr3A 90.000 110 10 1 2648 2756 8012103 8012212 3.380000e-29 141.0
27 TraesCS4D01G203600 chr6D 93.714 175 9 2 598 771 392896967 392897140 2.490000e-65 261.0
28 TraesCS4D01G203600 chr6B 93.182 176 12 0 597 772 539271041 539270866 8.940000e-65 259.0
29 TraesCS4D01G203600 chr6B 88.785 107 10 1 2644 2750 487591407 487591303 7.310000e-26 130.0
30 TraesCS4D01G203600 chr3D 91.848 184 13 2 589 770 185002588 185002771 1.160000e-63 255.0
31 TraesCS4D01G203600 chr3D 86.977 215 27 1 3 216 507445193 507444979 3.240000e-59 241.0
32 TraesCS4D01G203600 chr3D 93.333 45 2 1 2770 2814 7408255 7408298 2.090000e-06 65.8
33 TraesCS4D01G203600 chr1B 87.568 185 15 4 6209 6392 631133556 631133379 3.280000e-49 207.0
34 TraesCS4D01G203600 chr5B 87.027 185 16 4 6209 6392 89787826 89788003 1.530000e-47 202.0
35 TraesCS4D01G203600 chr5B 87.027 185 16 4 6209 6392 89813531 89813708 1.530000e-47 202.0
36 TraesCS4D01G203600 chr5D 86.486 185 17 4 6209 6392 211822045 211822222 7.110000e-46 196.0
37 TraesCS4D01G203600 chr7A 91.346 104 5 1 2648 2751 515002600 515002501 1.220000e-28 139.0
38 TraesCS4D01G203600 chr6A 89.908 109 10 1 2648 2756 3320561 3320454 1.220000e-28 139.0
39 TraesCS4D01G203600 chr2A 90.476 105 4 5 2648 2748 601704711 601704609 5.650000e-27 134.0
40 TraesCS4D01G203600 chr2A 88.679 106 11 1 2646 2751 767057316 767057420 2.630000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G203600 chr4D 350500601 350509575 8974 True 5570.933333 16574 91.534667 1 8975 3 chr4D.!!$R1 8974
1 TraesCS4D01G203600 chr4B 433645126 433653928 8802 True 2727.320000 13134 89.354600 3 8975 5 chr4B.!!$R1 8972
2 TraesCS4D01G203600 chr4A 114580056 114588666 8610 False 2303.380000 5114 92.386000 843 8975 5 chr4A.!!$F1 8132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 389 0.108138 GACACCACCGGGATCAAGAG 60.108 60.000 6.32 0.0 38.05 2.85 F
336 466 0.108424 CTGCACTCTCTACCACTGGC 60.108 60.000 0.00 0.0 0.00 4.85 F
496 626 0.114364 TCCACCACTGCTCTCTACCA 59.886 55.000 0.00 0.0 0.00 3.25 F
978 1128 0.180406 GAGAGAGAGAGAGGAGGCGT 59.820 60.000 0.00 0.0 0.00 5.68 F
1048 1552 0.600782 GGAACAGGTCGCGTGGTTAA 60.601 55.000 5.77 0.0 0.00 2.01 F
2202 2741 0.605589 CCCCCGTCCTTCACTGTTTC 60.606 60.000 0.00 0.0 0.00 2.78 F
2501 3059 1.189752 CTGAGCCTGTAGAAGAGCCA 58.810 55.000 0.00 0.0 0.00 4.75 F
3737 4452 2.867624 TCTGTTGTAGTAGTGACGGGT 58.132 47.619 0.00 0.0 0.00 5.28 F
4486 5216 5.076182 TGGATTGGTATTTTCAGCTTGACA 58.924 37.500 0.00 0.0 0.00 3.58 F
5451 6181 1.413767 CTGGCGATCCTGAAACGTCG 61.414 60.000 0.00 0.0 34.32 5.12 F
5908 6638 1.001974 TGCCAGTCTCGTGTAGCAATT 59.998 47.619 0.00 0.0 0.00 2.32 F
6200 6930 1.463444 GGGAAGAACGTTGATTGACCG 59.537 52.381 5.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 2657 1.067071 CCTAGAACTCCCACGGAACAC 60.067 57.143 0.00 0.0 0.00 3.32 R
2281 2836 0.321564 TTTGCGTGATCTGGTGGGAG 60.322 55.000 0.00 0.0 0.00 4.30 R
2452 3010 7.587037 TTCAAACAAAGATTCTCTTGGTGAT 57.413 32.000 0.00 0.0 39.63 3.06 R
2653 3211 4.525487 ACGCTCTTATATTATGGGACGGAA 59.475 41.667 0.00 0.0 0.00 4.30 R
2788 3346 6.671614 TTGAACTGTCAAAACGTCTTACAT 57.328 33.333 0.00 0.0 40.87 2.29 R
3737 4452 1.105457 GTCCATTTGCAGCCATAGCA 58.895 50.000 0.00 0.0 43.56 3.49 R
4353 5083 4.701651 CCACTTCTTTTGCAGTGATATCCA 59.298 41.667 0.00 0.0 44.55 3.41 R
4608 5338 3.736094 AGGGAGTGAATCAAGACCCATA 58.264 45.455 17.96 0.0 39.73 2.74 R
5908 6638 0.037160 TTGCTGCTGATGCCAAGAGA 59.963 50.000 0.00 0.0 38.71 3.10 R
7267 8185 2.291741 CAGGATATTCGGAAAAGCAGCC 59.708 50.000 0.00 0.0 0.00 4.85 R
7769 8687 2.373836 TGAGAAATTTCCCGGAGTTCCA 59.626 45.455 14.61 0.0 35.14 3.53 R
8081 9002 0.108585 ACAAGAGGCGCCAAAGAAGA 59.891 50.000 31.54 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.964209 TCCTAGGATCTCGAGCCAAAT 58.036 47.619 7.62 0.00 39.89 2.32
51 52 3.802866 AGGATCTCGAGCCAAATTTCTC 58.197 45.455 7.81 0.00 39.89 2.87
54 55 4.651317 CGAGCCAAATTTCTCGCG 57.349 55.556 14.14 0.00 44.30 5.87
94 95 2.921126 CAAGTGTTGCATCGTTCCTTC 58.079 47.619 0.00 0.00 0.00 3.46
95 96 2.549754 CAAGTGTTGCATCGTTCCTTCT 59.450 45.455 0.00 0.00 0.00 2.85
96 97 2.851195 AGTGTTGCATCGTTCCTTCTT 58.149 42.857 0.00 0.00 0.00 2.52
97 98 2.808543 AGTGTTGCATCGTTCCTTCTTC 59.191 45.455 0.00 0.00 0.00 2.87
98 99 2.095718 GTGTTGCATCGTTCCTTCTTCC 60.096 50.000 0.00 0.00 0.00 3.46
99 100 2.224523 TGTTGCATCGTTCCTTCTTCCT 60.225 45.455 0.00 0.00 0.00 3.36
100 101 2.099141 TGCATCGTTCCTTCTTCCTG 57.901 50.000 0.00 0.00 0.00 3.86
101 102 1.623311 TGCATCGTTCCTTCTTCCTGA 59.377 47.619 0.00 0.00 0.00 3.86
102 103 2.237143 TGCATCGTTCCTTCTTCCTGAT 59.763 45.455 0.00 0.00 0.00 2.90
103 104 2.869192 GCATCGTTCCTTCTTCCTGATC 59.131 50.000 0.00 0.00 0.00 2.92
104 105 2.941453 TCGTTCCTTCTTCCTGATCG 57.059 50.000 0.00 0.00 0.00 3.69
105 106 1.135083 TCGTTCCTTCTTCCTGATCGC 60.135 52.381 0.00 0.00 0.00 4.58
106 107 1.404181 CGTTCCTTCTTCCTGATCGCA 60.404 52.381 0.00 0.00 0.00 5.10
107 108 2.275318 GTTCCTTCTTCCTGATCGCAG 58.725 52.381 0.00 0.00 41.93 5.18
108 109 1.852633 TCCTTCTTCCTGATCGCAGA 58.147 50.000 0.00 0.00 45.17 4.26
109 110 2.179427 TCCTTCTTCCTGATCGCAGAA 58.821 47.619 0.00 0.00 45.17 3.02
110 111 2.167281 TCCTTCTTCCTGATCGCAGAAG 59.833 50.000 11.16 11.16 45.17 2.85
111 112 2.548875 CTTCTTCCTGATCGCAGAAGG 58.451 52.381 15.28 4.88 45.17 3.46
112 113 0.176680 TCTTCCTGATCGCAGAAGGC 59.823 55.000 15.28 0.00 45.17 4.35
121 122 3.414272 GCAGAAGGCGCACATAGG 58.586 61.111 10.83 0.00 0.00 2.57
122 123 2.828128 GCAGAAGGCGCACATAGGC 61.828 63.158 10.83 0.94 0.00 3.93
123 124 1.153289 CAGAAGGCGCACATAGGCT 60.153 57.895 10.83 0.00 46.93 4.58
124 125 1.144936 AGAAGGCGCACATAGGCTC 59.855 57.895 10.83 0.00 44.05 4.70
125 126 2.202932 AAGGCGCACATAGGCTCG 60.203 61.111 10.83 0.00 44.05 5.03
126 127 2.907897 GAAGGCGCACATAGGCTCGT 62.908 60.000 10.83 0.00 44.05 4.18
127 128 3.264897 GGCGCACATAGGCTCGTG 61.265 66.667 10.83 11.56 36.18 4.35
128 129 3.264897 GCGCACATAGGCTCGTGG 61.265 66.667 16.16 9.10 33.62 4.94
129 130 2.586079 CGCACATAGGCTCGTGGG 60.586 66.667 16.17 16.17 39.31 4.61
130 131 2.203070 GCACATAGGCTCGTGGGG 60.203 66.667 16.16 4.82 33.62 4.96
131 132 2.505982 CACATAGGCTCGTGGGGG 59.494 66.667 8.69 0.00 0.00 5.40
132 133 2.063979 CACATAGGCTCGTGGGGGA 61.064 63.158 8.69 0.00 0.00 4.81
133 134 1.762460 ACATAGGCTCGTGGGGGAG 60.762 63.158 0.00 0.00 37.11 4.30
134 135 2.122813 ATAGGCTCGTGGGGGAGG 60.123 66.667 0.00 0.00 34.56 4.30
139 140 4.181010 CTCGTGGGGGAGGCCATG 62.181 72.222 5.01 0.00 0.00 3.66
140 141 4.731853 TCGTGGGGGAGGCCATGA 62.732 66.667 5.01 0.00 0.00 3.07
141 142 4.489771 CGTGGGGGAGGCCATGAC 62.490 72.222 5.01 0.00 0.00 3.06
169 298 1.289800 CGATCAGCCATCCAGCATCG 61.290 60.000 0.00 0.00 33.95 3.84
172 301 1.452651 CAGCCATCCAGCATCGGTT 60.453 57.895 0.00 0.00 34.23 4.44
175 304 1.064758 AGCCATCCAGCATCGGTTTTA 60.065 47.619 0.00 0.00 34.23 1.52
213 343 0.801067 GAACTTGATCGTAGCGGCGT 60.801 55.000 9.37 0.00 0.00 5.68
216 346 2.607668 CTTGATCGTAGCGGCGTCCA 62.608 60.000 9.37 0.00 0.00 4.02
239 369 2.588034 CGCCTTTACGCTAGGGCC 60.588 66.667 6.73 0.00 41.35 5.80
241 371 3.085119 GCCTTTACGCTAGGGCCGA 62.085 63.158 6.73 0.00 38.77 5.54
259 389 0.108138 GACACCACCGGGATCAAGAG 60.108 60.000 6.32 0.00 38.05 2.85
260 390 1.450312 CACCACCGGGATCAAGAGC 60.450 63.158 6.32 0.00 38.05 4.09
265 395 0.911769 ACCGGGATCAAGAGCATCAA 59.088 50.000 6.32 0.00 37.82 2.57
267 397 1.134280 CCGGGATCAAGAGCATCAACT 60.134 52.381 0.00 0.00 37.82 3.16
268 398 2.208431 CGGGATCAAGAGCATCAACTC 58.792 52.381 0.00 0.00 37.82 3.01
269 399 2.208431 GGGATCAAGAGCATCAACTCG 58.792 52.381 0.00 0.00 41.77 4.18
308 438 4.957164 GGGGATGAGAAACCCGTC 57.043 61.111 0.00 0.00 46.42 4.79
318 448 1.141053 AGAAACCCGTCTGTTTGCTCT 59.859 47.619 0.00 0.00 38.51 4.09
322 452 1.571460 CCGTCTGTTTGCTCTGCAC 59.429 57.895 0.00 0.00 38.71 4.57
323 453 0.882042 CCGTCTGTTTGCTCTGCACT 60.882 55.000 0.00 0.00 38.71 4.40
324 454 0.510359 CGTCTGTTTGCTCTGCACTC 59.490 55.000 0.00 0.00 38.71 3.51
325 455 1.871408 CGTCTGTTTGCTCTGCACTCT 60.871 52.381 0.00 0.00 38.71 3.24
326 456 1.797635 GTCTGTTTGCTCTGCACTCTC 59.202 52.381 0.00 0.00 38.71 3.20
327 457 1.690893 TCTGTTTGCTCTGCACTCTCT 59.309 47.619 0.00 0.00 38.71 3.10
328 458 2.893489 TCTGTTTGCTCTGCACTCTCTA 59.107 45.455 0.00 0.00 38.71 2.43
329 459 2.992543 CTGTTTGCTCTGCACTCTCTAC 59.007 50.000 0.00 0.00 38.71 2.59
330 460 2.289072 TGTTTGCTCTGCACTCTCTACC 60.289 50.000 0.00 0.00 38.71 3.18
331 461 1.632589 TTGCTCTGCACTCTCTACCA 58.367 50.000 0.00 0.00 38.71 3.25
332 462 0.891373 TGCTCTGCACTCTCTACCAC 59.109 55.000 0.00 0.00 31.71 4.16
333 463 1.181786 GCTCTGCACTCTCTACCACT 58.818 55.000 0.00 0.00 0.00 4.00
334 464 1.135141 GCTCTGCACTCTCTACCACTG 60.135 57.143 0.00 0.00 0.00 3.66
335 465 1.476085 CTCTGCACTCTCTACCACTGG 59.524 57.143 0.00 0.00 0.00 4.00
336 466 0.108424 CTGCACTCTCTACCACTGGC 60.108 60.000 0.00 0.00 0.00 4.85
337 467 1.153745 GCACTCTCTACCACTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
338 468 1.513158 CACTCTCTACCACTGGCGG 59.487 63.158 0.00 0.00 0.00 6.13
339 469 0.965866 CACTCTCTACCACTGGCGGA 60.966 60.000 0.00 0.00 0.00 5.54
340 470 0.681564 ACTCTCTACCACTGGCGGAG 60.682 60.000 0.00 10.19 0.00 4.63
361 491 2.359900 CTTCAGCAAAGCCGAATAGGT 58.640 47.619 0.00 0.00 43.70 3.08
362 492 2.024176 TCAGCAAAGCCGAATAGGTC 57.976 50.000 0.00 0.00 43.70 3.85
370 500 4.420143 CGAATAGGTCGTGGCCTG 57.580 61.111 3.32 0.00 45.09 4.85
371 501 1.883084 CGAATAGGTCGTGGCCTGC 60.883 63.158 3.32 0.00 45.09 4.85
372 502 1.523938 GAATAGGTCGTGGCCTGCC 60.524 63.158 3.32 0.00 39.60 4.85
373 503 1.972660 GAATAGGTCGTGGCCTGCCT 61.973 60.000 9.97 8.70 39.60 4.75
374 504 0.689745 AATAGGTCGTGGCCTGCCTA 60.690 55.000 9.97 10.71 39.60 3.93
375 505 0.689745 ATAGGTCGTGGCCTGCCTAA 60.690 55.000 9.97 0.00 39.60 2.69
376 506 1.327690 TAGGTCGTGGCCTGCCTAAG 61.328 60.000 9.97 1.03 39.60 2.18
377 507 2.820037 GTCGTGGCCTGCCTAAGC 60.820 66.667 9.97 0.00 40.48 3.09
383 513 4.664062 GCCTGCCTAAGCCATGAA 57.336 55.556 0.00 0.00 38.69 2.57
384 514 2.886382 GCCTGCCTAAGCCATGAAA 58.114 52.632 0.00 0.00 38.69 2.69
385 515 1.406903 GCCTGCCTAAGCCATGAAAT 58.593 50.000 0.00 0.00 38.69 2.17
386 516 1.758862 GCCTGCCTAAGCCATGAAATT 59.241 47.619 0.00 0.00 38.69 1.82
387 517 2.169144 GCCTGCCTAAGCCATGAAATTT 59.831 45.455 0.00 0.00 38.69 1.82
388 518 3.369787 GCCTGCCTAAGCCATGAAATTTT 60.370 43.478 0.00 0.00 38.69 1.82
389 519 4.141959 GCCTGCCTAAGCCATGAAATTTTA 60.142 41.667 0.00 0.00 38.69 1.52
390 520 5.453762 GCCTGCCTAAGCCATGAAATTTTAT 60.454 40.000 0.00 0.00 38.69 1.40
391 521 5.987347 CCTGCCTAAGCCATGAAATTTTATG 59.013 40.000 14.39 14.39 38.69 1.90
392 522 5.358922 TGCCTAAGCCATGAAATTTTATGC 58.641 37.500 15.60 11.59 38.69 3.14
393 523 5.105023 TGCCTAAGCCATGAAATTTTATGCA 60.105 36.000 15.60 7.40 38.69 3.96
394 524 5.464389 GCCTAAGCCATGAAATTTTATGCAG 59.536 40.000 15.60 9.86 0.00 4.41
395 525 6.576185 CCTAAGCCATGAAATTTTATGCAGT 58.424 36.000 15.60 6.58 0.00 4.40
396 526 7.684187 GCCTAAGCCATGAAATTTTATGCAGTA 60.684 37.037 15.60 7.23 0.00 2.74
397 527 8.362639 CCTAAGCCATGAAATTTTATGCAGTAT 58.637 33.333 15.60 4.55 0.00 2.12
400 530 8.236585 AGCCATGAAATTTTATGCAGTATACA 57.763 30.769 15.60 0.00 0.00 2.29
401 531 8.863086 AGCCATGAAATTTTATGCAGTATACAT 58.137 29.630 15.60 0.00 0.00 2.29
402 532 9.132521 GCCATGAAATTTTATGCAGTATACATC 57.867 33.333 15.60 0.00 0.00 3.06
406 536 9.851686 TGAAATTTTATGCAGTATACATCTCCT 57.148 29.630 5.50 0.00 0.00 3.69
408 538 8.854614 AATTTTATGCAGTATACATCTCCTCC 57.145 34.615 5.50 0.00 0.00 4.30
409 539 6.360370 TTTATGCAGTATACATCTCCTCCC 57.640 41.667 5.50 0.00 0.00 4.30
410 540 3.328535 TGCAGTATACATCTCCTCCCA 57.671 47.619 5.50 0.00 0.00 4.37
411 541 3.234353 TGCAGTATACATCTCCTCCCAG 58.766 50.000 5.50 0.00 0.00 4.45
412 542 2.564947 GCAGTATACATCTCCTCCCAGG 59.435 54.545 5.50 0.00 36.46 4.45
413 543 2.564947 CAGTATACATCTCCTCCCAGGC 59.435 54.545 5.50 0.00 34.61 4.85
414 544 1.903183 GTATACATCTCCTCCCAGGCC 59.097 57.143 0.00 0.00 34.61 5.19
415 545 0.570218 ATACATCTCCTCCCAGGCCT 59.430 55.000 0.00 0.00 34.61 5.19
416 546 0.343372 TACATCTCCTCCCAGGCCTT 59.657 55.000 0.00 0.00 34.61 4.35
417 547 0.343372 ACATCTCCTCCCAGGCCTTA 59.657 55.000 0.00 0.00 34.61 2.69
418 548 1.274416 ACATCTCCTCCCAGGCCTTAA 60.274 52.381 0.00 0.00 34.61 1.85
419 549 1.846439 CATCTCCTCCCAGGCCTTAAA 59.154 52.381 0.00 0.00 34.61 1.52
420 550 2.053747 TCTCCTCCCAGGCCTTAAAA 57.946 50.000 0.00 0.00 34.61 1.52
421 551 1.633945 TCTCCTCCCAGGCCTTAAAAC 59.366 52.381 0.00 0.00 34.61 2.43
422 552 1.354368 CTCCTCCCAGGCCTTAAAACA 59.646 52.381 0.00 0.00 34.61 2.83
423 553 1.354368 TCCTCCCAGGCCTTAAAACAG 59.646 52.381 0.00 0.00 34.61 3.16
424 554 1.075536 CCTCCCAGGCCTTAAAACAGT 59.924 52.381 0.00 0.00 0.00 3.55
425 555 2.307686 CCTCCCAGGCCTTAAAACAGTA 59.692 50.000 0.00 0.00 0.00 2.74
426 556 3.610911 CTCCCAGGCCTTAAAACAGTAG 58.389 50.000 0.00 0.00 0.00 2.57
427 557 2.092323 CCCAGGCCTTAAAACAGTAGC 58.908 52.381 0.00 0.00 0.00 3.58
428 558 2.092323 CCAGGCCTTAAAACAGTAGCC 58.908 52.381 0.00 0.00 40.79 3.93
429 559 2.092323 CAGGCCTTAAAACAGTAGCCC 58.908 52.381 0.00 0.00 41.42 5.19
430 560 1.708551 AGGCCTTAAAACAGTAGCCCA 59.291 47.619 0.00 0.00 41.42 5.36
431 561 2.311841 AGGCCTTAAAACAGTAGCCCAT 59.688 45.455 0.00 0.00 41.42 4.00
432 562 3.526019 AGGCCTTAAAACAGTAGCCCATA 59.474 43.478 0.00 0.00 41.42 2.74
433 563 3.630769 GGCCTTAAAACAGTAGCCCATAC 59.369 47.826 0.00 0.00 34.23 2.39
434 564 3.311596 GCCTTAAAACAGTAGCCCATACG 59.688 47.826 0.00 0.00 39.55 3.06
435 565 4.761975 CCTTAAAACAGTAGCCCATACGA 58.238 43.478 0.00 0.00 39.55 3.43
436 566 5.365619 CCTTAAAACAGTAGCCCATACGAT 58.634 41.667 0.00 0.00 39.55 3.73
437 567 6.518493 CCTTAAAACAGTAGCCCATACGATA 58.482 40.000 0.00 0.00 39.55 2.92
438 568 7.159372 CCTTAAAACAGTAGCCCATACGATAT 58.841 38.462 0.00 0.00 39.55 1.63
439 569 7.660208 CCTTAAAACAGTAGCCCATACGATATT 59.340 37.037 0.00 0.00 39.55 1.28
440 570 8.967664 TTAAAACAGTAGCCCATACGATATTT 57.032 30.769 0.00 0.00 39.55 1.40
441 571 7.875327 AAAACAGTAGCCCATACGATATTTT 57.125 32.000 0.00 0.00 39.55 1.82
442 572 7.492352 AAACAGTAGCCCATACGATATTTTC 57.508 36.000 0.00 0.00 39.55 2.29
443 573 6.420913 ACAGTAGCCCATACGATATTTTCT 57.579 37.500 0.00 0.00 39.55 2.52
444 574 6.827727 ACAGTAGCCCATACGATATTTTCTT 58.172 36.000 0.00 0.00 39.55 2.52
445 575 6.929606 ACAGTAGCCCATACGATATTTTCTTC 59.070 38.462 0.00 0.00 39.55 2.87
446 576 6.369065 CAGTAGCCCATACGATATTTTCTTCC 59.631 42.308 0.00 0.00 39.55 3.46
447 577 5.568620 AGCCCATACGATATTTTCTTCCT 57.431 39.130 0.00 0.00 0.00 3.36
448 578 5.308825 AGCCCATACGATATTTTCTTCCTG 58.691 41.667 0.00 0.00 0.00 3.86
449 579 5.063880 GCCCATACGATATTTTCTTCCTGT 58.936 41.667 0.00 0.00 0.00 4.00
450 580 5.531287 GCCCATACGATATTTTCTTCCTGTT 59.469 40.000 0.00 0.00 0.00 3.16
451 581 6.513393 GCCCATACGATATTTTCTTCCTGTTG 60.513 42.308 0.00 0.00 0.00 3.33
452 582 6.017109 CCCATACGATATTTTCTTCCTGTTGG 60.017 42.308 0.00 0.00 0.00 3.77
453 583 4.965119 ACGATATTTTCTTCCTGTTGGC 57.035 40.909 0.00 0.00 0.00 4.52
454 584 3.694566 ACGATATTTTCTTCCTGTTGGCC 59.305 43.478 0.00 0.00 0.00 5.36
455 585 3.066760 CGATATTTTCTTCCTGTTGGCCC 59.933 47.826 0.00 0.00 0.00 5.80
456 586 1.256812 ATTTTCTTCCTGTTGGCCCG 58.743 50.000 0.00 0.00 0.00 6.13
457 587 1.460273 TTTTCTTCCTGTTGGCCCGC 61.460 55.000 0.00 0.00 0.00 6.13
458 588 3.860930 TTCTTCCTGTTGGCCCGCC 62.861 63.158 0.00 0.00 0.00 6.13
475 605 4.341502 CCACGTTTGGGCCGCAAG 62.342 66.667 0.00 0.00 39.57 4.01
476 606 4.999939 CACGTTTGGGCCGCAAGC 63.000 66.667 0.00 3.66 42.60 4.01
478 608 4.404654 CGTTTGGGCCGCAAGCTC 62.405 66.667 15.24 0.00 45.08 4.09
479 609 4.056125 GTTTGGGCCGCAAGCTCC 62.056 66.667 11.71 0.00 43.71 4.70
480 610 4.594854 TTTGGGCCGCAAGCTCCA 62.595 61.111 0.00 0.00 43.71 3.86
486 616 3.052082 CCGCAAGCTCCACCACTG 61.052 66.667 0.00 0.00 0.00 3.66
496 626 0.114364 TCCACCACTGCTCTCTACCA 59.886 55.000 0.00 0.00 0.00 3.25
505 635 3.713764 ACTGCTCTCTACCATGCCTTAAT 59.286 43.478 0.00 0.00 0.00 1.40
521 651 3.443329 CCTTAATGTGCACATGGTTAGCA 59.557 43.478 31.98 10.59 36.56 3.49
528 658 2.811431 TGCACATGGTTAGCAAGTGTAC 59.189 45.455 18.53 6.16 34.97 2.90
530 660 2.073816 ACATGGTTAGCAAGTGTACGC 58.926 47.619 0.00 0.00 0.00 4.42
536 666 3.435671 GGTTAGCAAGTGTACGCAATCTT 59.564 43.478 9.48 0.00 0.00 2.40
548 678 6.464834 GTGTACGCAATCTTATGCTGTAAAAC 59.535 38.462 0.39 1.99 44.21 2.43
549 679 4.981794 ACGCAATCTTATGCTGTAAAACC 58.018 39.130 0.00 0.00 44.21 3.27
550 680 4.457603 ACGCAATCTTATGCTGTAAAACCA 59.542 37.500 0.00 0.00 44.21 3.67
557 687 7.391148 TCTTATGCTGTAAAACCATCCTTTC 57.609 36.000 0.00 0.00 0.00 2.62
564 694 7.094377 TGCTGTAAAACCATCCTTTCTATCAAC 60.094 37.037 0.00 0.00 0.00 3.18
566 696 5.897377 AAAACCATCCTTTCTATCAACGG 57.103 39.130 0.00 0.00 0.00 4.44
579 709 7.591006 TTCTATCAACGGAAAGATACACAAC 57.409 36.000 0.00 0.00 0.00 3.32
590 720 6.349033 GGAAAGATACACAACCTTTGCGTATT 60.349 38.462 0.00 0.00 38.58 1.89
614 744 8.882415 TTCACGAACAAATATATACTTCCTCC 57.118 34.615 0.00 0.00 0.00 4.30
615 745 7.143340 TCACGAACAAATATATACTTCCTCCG 58.857 38.462 0.00 0.00 0.00 4.63
616 746 6.921857 CACGAACAAATATATACTTCCTCCGT 59.078 38.462 0.00 0.00 0.00 4.69
617 747 7.437267 CACGAACAAATATATACTTCCTCCGTT 59.563 37.037 0.00 0.00 0.00 4.44
618 748 7.983484 ACGAACAAATATATACTTCCTCCGTTT 59.017 33.333 0.00 0.00 0.00 3.60
619 749 8.485591 CGAACAAATATATACTTCCTCCGTTTC 58.514 37.037 0.00 0.00 0.00 2.78
620 750 9.543783 GAACAAATATATACTTCCTCCGTTTCT 57.456 33.333 0.00 0.00 0.00 2.52
621 751 8.888579 ACAAATATATACTTCCTCCGTTTCTG 57.111 34.615 0.00 0.00 0.00 3.02
622 752 8.701895 ACAAATATATACTTCCTCCGTTTCTGA 58.298 33.333 0.00 0.00 0.00 3.27
623 753 9.542462 CAAATATATACTTCCTCCGTTTCTGAA 57.458 33.333 0.00 0.00 0.00 3.02
629 759 6.743575 ACTTCCTCCGTTTCTGAATATTTG 57.256 37.500 0.00 0.00 0.00 2.32
630 760 6.238648 ACTTCCTCCGTTTCTGAATATTTGT 58.761 36.000 0.00 0.00 0.00 2.83
631 761 7.391620 ACTTCCTCCGTTTCTGAATATTTGTA 58.608 34.615 0.00 0.00 0.00 2.41
632 762 8.047310 ACTTCCTCCGTTTCTGAATATTTGTAT 58.953 33.333 0.00 0.00 0.00 2.29
633 763 8.801882 TTCCTCCGTTTCTGAATATTTGTATT 57.198 30.769 0.00 0.00 0.00 1.89
634 764 8.801882 TCCTCCGTTTCTGAATATTTGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
635 765 8.889717 TCCTCCGTTTCTGAATATTTGTATTTC 58.110 33.333 0.00 0.00 0.00 2.17
636 766 8.893727 CCTCCGTTTCTGAATATTTGTATTTCT 58.106 33.333 0.00 0.00 0.00 2.52
654 784 9.996554 TGTATTTCTAGAGATTTCAACAAGTGA 57.003 29.630 0.42 0.00 0.00 3.41
658 788 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
659 789 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
660 790 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
662 792 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
663 793 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
664 794 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
665 795 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
666 796 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
667 797 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
668 798 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
669 799 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
670 800 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
671 801 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
672 802 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
673 803 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
674 804 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
675 805 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
676 806 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
677 807 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
678 808 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
679 809 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
680 810 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
681 811 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
682 812 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
683 813 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
684 814 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
685 815 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
686 816 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
687 817 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
688 818 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
689 819 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
690 820 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
691 821 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
721 851 9.999009 ATGTTTATATACATCCGTACGTGATAG 57.001 33.333 15.21 12.45 33.58 2.08
722 852 9.002600 TGTTTATATACATCCGTACGTGATAGT 57.997 33.333 15.21 16.42 0.00 2.12
723 853 9.831737 GTTTATATACATCCGTACGTGATAGTT 57.168 33.333 15.21 7.08 0.00 2.24
725 855 7.677454 ATATACATCCGTACGTGATAGTTCA 57.323 36.000 15.21 8.70 0.00 3.18
726 856 4.913335 ACATCCGTACGTGATAGTTCAT 57.087 40.909 15.21 0.00 33.56 2.57
727 857 5.258456 ACATCCGTACGTGATAGTTCATT 57.742 39.130 15.21 0.00 33.56 2.57
728 858 5.657474 ACATCCGTACGTGATAGTTCATTT 58.343 37.500 15.21 0.00 33.56 2.32
729 859 5.518847 ACATCCGTACGTGATAGTTCATTTG 59.481 40.000 15.21 5.77 33.56 2.32
730 860 5.313520 TCCGTACGTGATAGTTCATTTGA 57.686 39.130 15.21 0.00 33.56 2.69
731 861 5.712004 TCCGTACGTGATAGTTCATTTGAA 58.288 37.500 15.21 0.00 33.56 2.69
732 862 6.157904 TCCGTACGTGATAGTTCATTTGAAA 58.842 36.000 15.21 0.00 35.58 2.69
733 863 6.814644 TCCGTACGTGATAGTTCATTTGAAAT 59.185 34.615 15.21 0.00 35.58 2.17
734 864 7.009815 TCCGTACGTGATAGTTCATTTGAAATC 59.990 37.037 15.21 0.00 35.58 2.17
735 865 7.010183 CCGTACGTGATAGTTCATTTGAAATCT 59.990 37.037 15.21 0.00 35.58 2.40
736 866 8.050750 CGTACGTGATAGTTCATTTGAAATCTC 58.949 37.037 7.22 0.00 35.58 2.75
737 867 9.088512 GTACGTGATAGTTCATTTGAAATCTCT 57.911 33.333 0.00 0.00 35.58 3.10
739 869 9.653287 ACGTGATAGTTCATTTGAAATCTCTAA 57.347 29.630 0.00 0.00 35.58 2.10
764 894 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
765 895 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
766 896 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
767 897 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
768 898 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
769 899 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
770 900 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
771 901 8.591072 CAAATATTTAGGAACGGAGGGAGTATA 58.409 37.037 0.00 0.00 0.00 1.47
772 902 7.715266 ATATTTAGGAACGGAGGGAGTATAC 57.285 40.000 0.00 0.00 0.00 1.47
773 903 1.978454 AGGAACGGAGGGAGTATACG 58.022 55.000 0.00 0.00 0.00 3.06
790 920 6.814043 AGTATACGATAAGAAGGGTTCAACC 58.186 40.000 0.00 0.00 37.60 3.77
795 925 4.743644 CGATAAGAAGGGTTCAACCGATAC 59.256 45.833 0.00 0.00 39.83 2.24
800 930 1.081094 GGGTTCAACCGATACAACCG 58.919 55.000 0.00 0.00 39.83 4.44
819 949 3.734231 ACCGAAGATACACAAATATCGCG 59.266 43.478 0.00 0.00 36.78 5.87
820 950 3.121279 CCGAAGATACACAAATATCGCGG 59.879 47.826 6.13 12.39 42.43 6.46
822 952 4.621460 CGAAGATACACAAATATCGCGGAT 59.379 41.667 6.13 0.75 36.78 4.18
823 953 5.798434 CGAAGATACACAAATATCGCGGATA 59.202 40.000 6.13 3.33 36.78 2.59
824 954 6.472486 CGAAGATACACAAATATCGCGGATAT 59.528 38.462 6.13 5.76 36.89 1.63
825 955 7.642586 CGAAGATACACAAATATCGCGGATATA 59.357 37.037 6.13 0.00 34.57 0.86
826 956 8.630278 AAGATACACAAATATCGCGGATATAC 57.370 34.615 6.13 0.00 34.57 1.47
827 957 6.910972 AGATACACAAATATCGCGGATATACG 59.089 38.462 6.13 1.93 34.57 3.06
839 969 8.651200 ATCGCGGATATACGATAATTAATACG 57.349 34.615 12.68 0.69 46.50 3.06
840 970 7.071414 TCGCGGATATACGATAATTAATACGG 58.929 38.462 12.68 0.09 35.47 4.02
841 971 6.303970 CGCGGATATACGATAATTAATACGGG 59.696 42.308 12.68 7.21 35.47 5.28
842 972 6.583806 GCGGATATACGATAATTAATACGGGG 59.416 42.308 12.68 0.00 35.47 5.73
843 973 6.583806 CGGATATACGATAATTAATACGGGGC 59.416 42.308 0.00 0.00 35.47 5.80
845 975 7.927629 GGATATACGATAATTAATACGGGGCAA 59.072 37.037 11.97 0.00 0.00 4.52
847 977 9.841295 ATATACGATAATTAATACGGGGCAAAT 57.159 29.630 11.97 0.00 0.00 2.32
849 979 9.841295 ATACGATAATTAATACGGGGCAAATAT 57.159 29.630 11.97 0.00 0.00 1.28
850 980 8.205131 ACGATAATTAATACGGGGCAAATATC 57.795 34.615 11.97 2.22 0.00 1.63
926 1066 8.637986 AGGGCGAAAATATGCAGAAATTAATTA 58.362 29.630 0.01 0.00 0.00 1.40
978 1128 0.180406 GAGAGAGAGAGAGGAGGCGT 59.820 60.000 0.00 0.00 0.00 5.68
1048 1552 0.600782 GGAACAGGTCGCGTGGTTAA 60.601 55.000 5.77 0.00 0.00 2.01
1176 1689 3.038417 CAGATCGATTCGCCGGCC 61.038 66.667 23.46 5.44 0.00 6.13
1227 1744 4.812476 CTCGCCGCGGTGGATGAA 62.812 66.667 36.19 17.42 42.00 2.57
1405 1925 3.803082 CCATGGTCCGTGCTTGCG 61.803 66.667 2.57 0.00 0.00 4.85
1410 1930 3.276846 GTCCGTGCTTGCGTGGTT 61.277 61.111 3.51 0.00 0.00 3.67
1434 1954 4.032672 CAGTCTCGTTCCGTACTAGTAGTG 59.967 50.000 13.29 0.00 0.00 2.74
1456 1976 3.370061 GGTTTCTTGTAATCGTTCCTCCG 59.630 47.826 0.00 0.00 0.00 4.63
1552 2072 3.323243 CCGTACTTGATTTCGTTCAGGT 58.677 45.455 0.00 6.01 39.10 4.00
1651 2175 5.196695 AGATTGGGGATTGCTTTACTTCTC 58.803 41.667 0.00 0.00 0.00 2.87
1890 2421 9.810545 GTTCTCATTAGTTTTCTAGTATGCTCT 57.189 33.333 0.00 0.00 33.61 4.09
2059 2594 8.143835 AGATTCTTGTTTCGAATTTCAAATGGT 58.856 29.630 0.00 0.00 31.62 3.55
2078 2613 3.244422 TGGTTGTAGCGGACAGATCTTTT 60.244 43.478 0.00 0.00 39.88 2.27
2082 2617 4.495422 TGTAGCGGACAGATCTTTTCTTC 58.505 43.478 0.00 0.00 32.86 2.87
2170 2709 1.278127 CCCCTAAACCAGACGTGTGAT 59.722 52.381 15.27 0.00 0.00 3.06
2202 2741 0.605589 CCCCCGTCCTTCACTGTTTC 60.606 60.000 0.00 0.00 0.00 2.78
2281 2836 4.142600 GGCATGTAGAGGAAATGTGACAAC 60.143 45.833 0.00 0.00 0.00 3.32
2439 2996 4.200092 GCCTTCTTATTCTAACCACTGGG 58.800 47.826 0.00 0.00 41.29 4.45
2452 3010 5.514500 AACCACTGGGCTTCTTATTCTAA 57.486 39.130 0.00 0.00 37.90 2.10
2501 3059 1.189752 CTGAGCCTGTAGAAGAGCCA 58.810 55.000 0.00 0.00 0.00 4.75
2632 3190 5.734855 AAATATTGTGTGCTCCATACGAC 57.265 39.130 0.00 0.00 0.00 4.34
2653 3211 6.703165 ACGACGAAACACTAATTTTTACTCCT 59.297 34.615 0.00 0.00 0.00 3.69
2681 3239 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2788 3346 5.633655 TGTTACACCCTCTGTTTCCTAAA 57.366 39.130 0.00 0.00 33.91 1.85
3302 3861 5.385198 TCTCTATGTGGCCTTTGTTTTTCT 58.615 37.500 3.32 0.00 0.00 2.52
3311 3870 4.290969 GCCTTTGTTTTTCTCTTTCCTCG 58.709 43.478 0.00 0.00 0.00 4.63
3568 4151 3.004106 ACATGCACACTTTTCTCTTCTGC 59.996 43.478 0.00 0.00 0.00 4.26
3604 4319 4.366267 ACCCTCTGATATGAAACTGGAGT 58.634 43.478 0.00 0.00 0.00 3.85
3737 4452 2.867624 TCTGTTGTAGTAGTGACGGGT 58.132 47.619 0.00 0.00 0.00 5.28
3886 4601 6.844279 GCCAAGATACACGATTTATAACGTTG 59.156 38.462 11.99 0.00 40.76 4.10
4486 5216 5.076182 TGGATTGGTATTTTCAGCTTGACA 58.924 37.500 0.00 0.00 0.00 3.58
4608 5338 1.625818 CCAGGTGCTGTAGGAAGACTT 59.374 52.381 0.00 0.00 0.00 3.01
5451 6181 1.413767 CTGGCGATCCTGAAACGTCG 61.414 60.000 0.00 0.00 34.32 5.12
5553 6283 2.362077 ACCAGACACCAGCACAATTTTC 59.638 45.455 0.00 0.00 0.00 2.29
5908 6638 1.001974 TGCCAGTCTCGTGTAGCAATT 59.998 47.619 0.00 0.00 0.00 2.32
6190 6920 2.169352 CCAGATGATGAGGGAAGAACGT 59.831 50.000 0.00 0.00 0.00 3.99
6200 6930 1.463444 GGGAAGAACGTTGATTGACCG 59.537 52.381 5.00 0.00 0.00 4.79
6418 7148 3.699067 CCATCGACAGCATTTGATTTCC 58.301 45.455 0.00 0.00 0.00 3.13
7113 8031 2.315011 GATCATCTTACAGCGAGCGAG 58.685 52.381 0.00 0.00 0.00 5.03
7267 8185 4.457496 ATGGGCTGCTCGACGTGG 62.457 66.667 0.00 0.00 0.00 4.94
7353 8271 1.961277 CATTCTATGGCCGGCGTCC 60.961 63.158 22.54 7.39 0.00 4.79
7695 8613 4.142600 GGTGTAGCTTTTGTGGCTAGAATG 60.143 45.833 0.00 0.00 42.03 2.67
7704 8622 2.308570 TGTGGCTAGAATGTTCCATGGT 59.691 45.455 12.58 0.00 0.00 3.55
7769 8687 6.302535 TGAAAGATGGCAATGATTTGGAAT 57.697 33.333 0.00 0.00 33.22 3.01
7770 8688 6.110033 TGAAAGATGGCAATGATTTGGAATG 58.890 36.000 0.00 0.00 33.22 2.67
7944 8863 1.674322 CCAGTGGATTTTCGGCGGT 60.674 57.895 1.68 0.00 0.00 5.68
8015 8936 4.017177 AGCCTTCCTTGTTTGGTACTAC 57.983 45.455 0.00 0.00 0.00 2.73
8018 8939 5.046520 AGCCTTCCTTGTTTGGTACTACTAG 60.047 44.000 0.00 0.00 0.00 2.57
8019 8940 5.279859 GCCTTCCTTGTTTGGTACTACTAGT 60.280 44.000 0.00 0.00 0.00 2.57
8020 8941 6.071165 GCCTTCCTTGTTTGGTACTACTAGTA 60.071 42.308 1.89 1.89 0.00 1.82
8031 8952 9.918630 TTTGGTACTACTAGTATGTTTTGACTC 57.081 33.333 2.33 0.00 32.65 3.36
8034 8955 7.701501 GGTACTACTAGTATGTTTTGACTCTGC 59.298 40.741 2.33 0.00 32.65 4.26
8091 9013 2.093021 AGAGAGCTCCATCTTCTTTGGC 60.093 50.000 10.93 0.00 34.06 4.52
8112 9034 1.133976 GCCTCTTGTGGGTGATGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
8167 9089 0.535102 AGCTTGGACGTGAACCCTTG 60.535 55.000 0.00 0.00 0.00 3.61
8168 9090 1.949257 CTTGGACGTGAACCCTTGC 59.051 57.895 0.00 0.00 0.00 4.01
8169 9091 0.817634 CTTGGACGTGAACCCTTGCA 60.818 55.000 0.00 0.00 0.00 4.08
8170 9092 0.817634 TTGGACGTGAACCCTTGCAG 60.818 55.000 0.00 0.00 0.00 4.41
8171 9093 1.966451 GGACGTGAACCCTTGCAGG 60.966 63.158 0.00 0.00 34.30 4.85
8211 9133 0.770499 TTCAACAGATCACTGCCCCA 59.230 50.000 0.00 0.00 46.95 4.96
8253 9175 2.109799 CGGATCAATGCCTCGCCT 59.890 61.111 0.00 0.00 0.00 5.52
8270 9192 2.604079 TGTTGCCCTGGCCATTGG 60.604 61.111 5.51 11.97 41.09 3.16
8271 9193 3.393106 GTTGCCCTGGCCATTGGG 61.393 66.667 23.22 23.22 46.00 4.12
8272 9194 4.718827 TTGCCCTGGCCATTGGGG 62.719 66.667 27.17 24.60 43.53 4.96
8293 9215 0.321564 ATGTGGTGTGTGTGATCCGG 60.322 55.000 0.00 0.00 0.00 5.14
8321 9243 3.771577 ACTGTTCCTCGTTTCTCCATT 57.228 42.857 0.00 0.00 0.00 3.16
8323 9245 4.822026 ACTGTTCCTCGTTTCTCCATTAG 58.178 43.478 0.00 0.00 0.00 1.73
8334 9256 9.834628 CTCGTTTCTCCATTAGTAGATTAGATC 57.165 37.037 0.00 0.00 0.00 2.75
8432 9365 3.205395 GCACCTGCAACAACACCA 58.795 55.556 0.00 0.00 41.59 4.17
8437 9370 1.386525 CCTGCAACAACACCACTGCT 61.387 55.000 0.00 0.00 35.78 4.24
8442 9375 2.930455 GCAACAACACCACTGCTTTTGT 60.930 45.455 0.00 0.00 31.74 2.83
8449 9387 2.884012 CACCACTGCTTTTGTACATCCA 59.116 45.455 0.00 0.00 0.00 3.41
8457 9395 4.590647 TGCTTTTGTACATCCAAAATCCCA 59.409 37.500 0.00 0.00 41.88 4.37
8471 9409 8.650143 TCCAAAATCCCAATATAAATCTAGCC 57.350 34.615 0.00 0.00 0.00 3.93
8516 9474 1.892468 CAGTCACCGCTACGAGTAAC 58.108 55.000 0.00 0.00 0.00 2.50
8519 9477 1.226491 CACCGCTACGAGTAACCCG 60.226 63.158 0.00 0.00 0.00 5.28
8521 9479 2.278401 CGCTACGAGTAACCCGCC 60.278 66.667 0.00 0.00 0.00 6.13
8522 9480 2.768492 CGCTACGAGTAACCCGCCT 61.768 63.158 0.00 0.00 0.00 5.52
8524 9482 1.436336 CTACGAGTAACCCGCCTGG 59.564 63.158 0.00 0.00 41.37 4.45
8525 9483 1.001020 TACGAGTAACCCGCCTGGA 60.001 57.895 0.00 0.00 37.49 3.86
8526 9484 1.033746 TACGAGTAACCCGCCTGGAG 61.034 60.000 0.00 0.00 37.49 3.86
8527 9485 2.050350 CGAGTAACCCGCCTGGAGA 61.050 63.158 0.00 0.00 37.49 3.71
8530 9489 1.218316 GTAACCCGCCTGGAGAGTG 59.782 63.158 0.00 0.00 37.49 3.51
8535 9494 2.351244 CCGCCTGGAGAGTGTAGCA 61.351 63.158 0.00 0.00 37.49 3.49
8567 9526 0.892063 GAGTTCTTGCTCTCCTCCGT 59.108 55.000 0.00 0.00 32.99 4.69
8823 9797 3.977244 CTGGTGCAACGGCCAACC 61.977 66.667 2.24 2.37 40.13 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.077184 CGCTCCACGGCCAACCTA 62.077 66.667 2.24 0.00 38.44 3.08
5 6 3.723348 GTTCGCTCCACGGCCAAC 61.723 66.667 2.24 0.00 43.89 3.77
12 13 0.105039 CTAGGATGGGTTCGCTCCAC 59.895 60.000 0.00 0.00 37.08 4.02
15 16 1.273886 GATCCTAGGATGGGTTCGCTC 59.726 57.143 29.32 8.24 38.29 5.03
51 52 1.521457 TGGGCTGCTATTTCTCGCG 60.521 57.895 0.00 0.00 0.00 5.87
54 55 1.673168 CTGGTGGGCTGCTATTTCTC 58.327 55.000 0.00 0.00 0.00 2.87
63 64 1.829533 AACACTTGCTGGTGGGCTG 60.830 57.895 12.64 0.00 41.09 4.85
83 84 3.119291 CGATCAGGAAGAAGGAACGATG 58.881 50.000 0.00 0.00 0.00 3.84
86 87 1.281899 GCGATCAGGAAGAAGGAACG 58.718 55.000 0.00 0.00 0.00 3.95
87 88 2.093973 TCTGCGATCAGGAAGAAGGAAC 60.094 50.000 0.00 0.00 40.69 3.62
88 89 2.179427 TCTGCGATCAGGAAGAAGGAA 58.821 47.619 0.00 0.00 40.69 3.36
89 90 1.852633 TCTGCGATCAGGAAGAAGGA 58.147 50.000 0.00 0.00 40.69 3.36
90 91 2.548875 CTTCTGCGATCAGGAAGAAGG 58.451 52.381 9.46 0.00 40.69 3.46
91 92 2.548875 CCTTCTGCGATCAGGAAGAAG 58.451 52.381 16.11 13.26 40.69 2.85
92 93 1.406069 GCCTTCTGCGATCAGGAAGAA 60.406 52.381 16.11 6.05 40.69 2.52
93 94 0.176680 GCCTTCTGCGATCAGGAAGA 59.823 55.000 16.11 0.00 40.69 2.87
94 95 2.687842 GCCTTCTGCGATCAGGAAG 58.312 57.895 0.27 6.34 40.69 3.46
95 96 4.941609 GCCTTCTGCGATCAGGAA 57.058 55.556 0.27 0.00 40.69 3.36
104 105 2.828128 GCCTATGTGCGCCTTCTGC 61.828 63.158 4.18 0.00 0.00 4.26
105 106 1.153289 AGCCTATGTGCGCCTTCTG 60.153 57.895 4.18 0.00 36.02 3.02
106 107 1.144936 GAGCCTATGTGCGCCTTCT 59.855 57.895 4.18 0.00 36.02 2.85
107 108 2.240500 CGAGCCTATGTGCGCCTTC 61.241 63.158 4.18 0.00 36.02 3.46
108 109 2.202932 CGAGCCTATGTGCGCCTT 60.203 61.111 4.18 0.00 36.02 4.35
109 110 3.461773 ACGAGCCTATGTGCGCCT 61.462 61.111 4.18 0.00 36.02 5.52
110 111 3.264897 CACGAGCCTATGTGCGCC 61.265 66.667 4.18 0.00 36.02 6.53
111 112 3.264897 CCACGAGCCTATGTGCGC 61.265 66.667 0.00 0.00 34.77 6.09
112 113 2.586079 CCCACGAGCCTATGTGCG 60.586 66.667 0.00 0.00 34.77 5.34
113 114 2.203070 CCCCACGAGCCTATGTGC 60.203 66.667 0.00 0.00 34.77 4.57
114 115 2.032860 CTCCCCCACGAGCCTATGTG 62.033 65.000 0.00 0.00 35.87 3.21
115 116 1.762460 CTCCCCCACGAGCCTATGT 60.762 63.158 0.00 0.00 0.00 2.29
116 117 2.511452 CCTCCCCCACGAGCCTATG 61.511 68.421 0.00 0.00 0.00 2.23
117 118 2.122813 CCTCCCCCACGAGCCTAT 60.123 66.667 0.00 0.00 0.00 2.57
122 123 4.181010 CATGGCCTCCCCCACGAG 62.181 72.222 3.32 0.00 37.79 4.18
123 124 4.731853 TCATGGCCTCCCCCACGA 62.732 66.667 3.32 0.00 37.79 4.35
124 125 4.489771 GTCATGGCCTCCCCCACG 62.490 72.222 3.32 0.00 37.79 4.94
125 126 4.489771 CGTCATGGCCTCCCCCAC 62.490 72.222 3.32 0.00 37.79 4.61
135 136 2.771763 GATCGCCTAGCCCGTCATGG 62.772 65.000 0.00 0.00 37.55 3.66
136 137 1.373497 GATCGCCTAGCCCGTCATG 60.373 63.158 0.00 0.00 0.00 3.07
137 138 1.810606 CTGATCGCCTAGCCCGTCAT 61.811 60.000 1.77 0.00 0.00 3.06
138 139 2.441348 TGATCGCCTAGCCCGTCA 60.441 61.111 1.77 2.98 0.00 4.35
139 140 2.336809 CTGATCGCCTAGCCCGTC 59.663 66.667 1.77 0.95 0.00 4.79
140 141 3.917760 GCTGATCGCCTAGCCCGT 61.918 66.667 0.00 0.00 33.89 5.28
162 291 1.665679 AGCGATGTAAAACCGATGCTG 59.334 47.619 0.00 0.00 0.00 4.41
169 298 2.352388 TGTGGCTAGCGATGTAAAACC 58.648 47.619 9.00 0.00 0.00 3.27
172 301 3.535280 TCATGTGGCTAGCGATGTAAA 57.465 42.857 9.00 0.00 0.00 2.01
175 304 1.482182 TCTTCATGTGGCTAGCGATGT 59.518 47.619 9.00 0.00 0.00 3.06
230 360 4.814294 GTGGTGTCGGCCCTAGCG 62.814 72.222 0.00 0.00 41.24 4.26
232 362 4.143333 CGGTGGTGTCGGCCCTAG 62.143 72.222 0.00 0.00 0.00 3.02
239 369 1.447838 CTTGATCCCGGTGGTGTCG 60.448 63.158 0.00 0.00 0.00 4.35
241 371 1.983224 CTCTTGATCCCGGTGGTGT 59.017 57.895 0.00 0.00 0.00 4.16
265 395 5.945191 ACTAACTTTAGCTAACTCTCCGAGT 59.055 40.000 5.45 2.20 38.17 4.18
267 397 6.349944 CCAACTAACTTTAGCTAACTCTCCGA 60.350 42.308 5.45 0.00 34.09 4.55
268 398 5.805994 CCAACTAACTTTAGCTAACTCTCCG 59.194 44.000 5.45 0.00 34.09 4.63
269 399 6.107343 CCCAACTAACTTTAGCTAACTCTCC 58.893 44.000 5.45 0.00 34.09 3.71
306 436 1.797635 GAGAGTGCAGAGCAAACAGAC 59.202 52.381 0.00 0.00 41.47 3.51
308 438 2.166821 AGAGAGTGCAGAGCAAACAG 57.833 50.000 0.00 0.00 41.47 3.16
318 448 1.877576 CGCCAGTGGTAGAGAGTGCA 61.878 60.000 11.74 0.00 0.00 4.57
322 452 2.010582 GCTCCGCCAGTGGTAGAGAG 62.011 65.000 25.99 19.34 0.00 3.20
323 453 2.052690 GCTCCGCCAGTGGTAGAGA 61.053 63.158 25.99 11.85 0.00 3.10
324 454 1.608717 AAGCTCCGCCAGTGGTAGAG 61.609 60.000 20.42 20.42 0.00 2.43
325 455 1.605058 GAAGCTCCGCCAGTGGTAGA 61.605 60.000 11.74 7.06 0.00 2.59
326 456 1.153549 GAAGCTCCGCCAGTGGTAG 60.154 63.158 11.74 7.45 0.00 3.18
327 457 1.888436 CTGAAGCTCCGCCAGTGGTA 61.888 60.000 11.74 0.00 0.00 3.25
328 458 3.241530 TGAAGCTCCGCCAGTGGT 61.242 61.111 11.74 0.00 0.00 4.16
329 459 2.435586 CTGAAGCTCCGCCAGTGG 60.436 66.667 4.20 4.20 0.00 4.00
330 460 3.123620 GCTGAAGCTCCGCCAGTG 61.124 66.667 0.00 0.00 38.21 3.66
331 461 2.680974 TTTGCTGAAGCTCCGCCAGT 62.681 55.000 3.61 0.00 42.66 4.00
332 462 1.919956 CTTTGCTGAAGCTCCGCCAG 61.920 60.000 3.61 0.00 42.66 4.85
333 463 1.968017 CTTTGCTGAAGCTCCGCCA 60.968 57.895 3.61 0.00 42.66 5.69
334 464 2.873288 CTTTGCTGAAGCTCCGCC 59.127 61.111 3.61 0.00 42.66 6.13
343 473 1.739035 CGACCTATTCGGCTTTGCTGA 60.739 52.381 0.00 0.00 44.60 4.26
344 474 0.652592 CGACCTATTCGGCTTTGCTG 59.347 55.000 0.00 0.00 44.60 4.41
345 475 3.065575 CGACCTATTCGGCTTTGCT 57.934 52.632 0.00 0.00 44.60 3.91
354 484 1.523938 GGCAGGCCACGACCTATTC 60.524 63.158 5.01 0.00 38.26 1.75
355 485 0.689745 TAGGCAGGCCACGACCTATT 60.690 55.000 13.63 0.00 38.26 1.73
356 486 0.689745 TTAGGCAGGCCACGACCTAT 60.690 55.000 13.63 0.00 38.26 2.57
357 487 1.305465 TTAGGCAGGCCACGACCTA 60.305 57.895 13.63 7.28 38.26 3.08
358 488 2.606519 TTAGGCAGGCCACGACCT 60.607 61.111 13.63 8.40 42.30 3.85
359 489 2.125106 CTTAGGCAGGCCACGACC 60.125 66.667 13.63 0.00 38.92 4.79
360 490 2.820037 GCTTAGGCAGGCCACGAC 60.820 66.667 13.63 0.00 38.92 4.34
361 491 4.096003 GGCTTAGGCAGGCCACGA 62.096 66.667 13.63 0.00 46.84 4.35
367 497 4.476628 AAAATTTCATGGCTTAGGCAGG 57.523 40.909 14.22 14.22 42.43 4.85
368 498 5.464389 GCATAAAATTTCATGGCTTAGGCAG 59.536 40.000 14.92 6.75 42.43 4.85
369 499 5.105023 TGCATAAAATTTCATGGCTTAGGCA 60.105 36.000 11.68 11.68 43.52 4.75
370 500 5.358922 TGCATAAAATTTCATGGCTTAGGC 58.641 37.500 3.48 0.00 37.82 3.93
371 501 6.576185 ACTGCATAAAATTTCATGGCTTAGG 58.424 36.000 3.48 0.00 0.00 2.69
374 504 8.694540 TGTATACTGCATAAAATTTCATGGCTT 58.305 29.630 3.48 0.00 0.00 4.35
375 505 8.236585 TGTATACTGCATAAAATTTCATGGCT 57.763 30.769 3.48 0.00 0.00 4.75
376 506 9.132521 GATGTATACTGCATAAAATTTCATGGC 57.867 33.333 3.48 1.05 0.00 4.40
380 510 9.851686 AGGAGATGTATACTGCATAAAATTTCA 57.148 29.630 4.17 0.00 0.00 2.69
382 512 9.289782 GGAGGAGATGTATACTGCATAAAATTT 57.710 33.333 4.17 0.00 0.00 1.82
383 513 7.885399 GGGAGGAGATGTATACTGCATAAAATT 59.115 37.037 4.17 0.00 0.00 1.82
384 514 7.017551 TGGGAGGAGATGTATACTGCATAAAAT 59.982 37.037 4.17 0.00 0.00 1.82
385 515 6.328934 TGGGAGGAGATGTATACTGCATAAAA 59.671 38.462 4.17 0.00 0.00 1.52
386 516 5.843969 TGGGAGGAGATGTATACTGCATAAA 59.156 40.000 4.17 0.00 0.00 1.40
387 517 5.402630 TGGGAGGAGATGTATACTGCATAA 58.597 41.667 4.17 0.00 0.00 1.90
388 518 5.010708 TGGGAGGAGATGTATACTGCATA 57.989 43.478 4.17 0.00 0.00 3.14
389 519 3.837146 CTGGGAGGAGATGTATACTGCAT 59.163 47.826 4.17 0.00 0.00 3.96
390 520 3.234353 CTGGGAGGAGATGTATACTGCA 58.766 50.000 4.17 0.00 0.00 4.41
391 521 2.564947 CCTGGGAGGAGATGTATACTGC 59.435 54.545 4.17 0.00 37.67 4.40
392 522 2.564947 GCCTGGGAGGAGATGTATACTG 59.435 54.545 4.17 0.00 37.67 2.74
393 523 2.493687 GGCCTGGGAGGAGATGTATACT 60.494 54.545 4.17 0.00 37.67 2.12
394 524 1.903183 GGCCTGGGAGGAGATGTATAC 59.097 57.143 0.00 0.00 37.67 1.47
395 525 1.795786 AGGCCTGGGAGGAGATGTATA 59.204 52.381 3.11 0.00 37.67 1.47
396 526 0.570218 AGGCCTGGGAGGAGATGTAT 59.430 55.000 3.11 0.00 37.67 2.29
397 527 0.343372 AAGGCCTGGGAGGAGATGTA 59.657 55.000 5.69 0.00 37.67 2.29
398 528 0.343372 TAAGGCCTGGGAGGAGATGT 59.657 55.000 5.69 0.00 37.67 3.06
399 529 1.511613 TTAAGGCCTGGGAGGAGATG 58.488 55.000 5.69 0.00 37.67 2.90
400 530 2.242452 GTTTTAAGGCCTGGGAGGAGAT 59.758 50.000 5.69 0.00 37.67 2.75
401 531 1.633945 GTTTTAAGGCCTGGGAGGAGA 59.366 52.381 5.69 0.00 37.67 3.71
402 532 1.354368 TGTTTTAAGGCCTGGGAGGAG 59.646 52.381 5.69 0.00 37.67 3.69
403 533 1.354368 CTGTTTTAAGGCCTGGGAGGA 59.646 52.381 5.69 0.00 37.67 3.71
404 534 1.075536 ACTGTTTTAAGGCCTGGGAGG 59.924 52.381 5.69 0.00 38.80 4.30
405 535 2.586648 ACTGTTTTAAGGCCTGGGAG 57.413 50.000 5.69 0.00 0.00 4.30
406 536 2.290705 GCTACTGTTTTAAGGCCTGGGA 60.291 50.000 5.69 0.00 0.00 4.37
407 537 2.092323 GCTACTGTTTTAAGGCCTGGG 58.908 52.381 5.69 0.00 0.00 4.45
408 538 2.092323 GGCTACTGTTTTAAGGCCTGG 58.908 52.381 5.69 0.00 36.96 4.45
412 542 3.311596 CGTATGGGCTACTGTTTTAAGGC 59.688 47.826 0.00 0.00 35.21 4.35
413 543 4.761975 TCGTATGGGCTACTGTTTTAAGG 58.238 43.478 0.00 0.00 0.00 2.69
414 544 8.603242 AATATCGTATGGGCTACTGTTTTAAG 57.397 34.615 0.00 0.00 0.00 1.85
415 545 8.967664 AAATATCGTATGGGCTACTGTTTTAA 57.032 30.769 0.00 0.00 0.00 1.52
416 546 8.967664 AAAATATCGTATGGGCTACTGTTTTA 57.032 30.769 0.00 0.00 0.00 1.52
417 547 7.773690 AGAAAATATCGTATGGGCTACTGTTTT 59.226 33.333 0.00 0.00 0.00 2.43
418 548 7.280356 AGAAAATATCGTATGGGCTACTGTTT 58.720 34.615 0.00 0.00 0.00 2.83
419 549 6.827727 AGAAAATATCGTATGGGCTACTGTT 58.172 36.000 0.00 0.00 0.00 3.16
420 550 6.420913 AGAAAATATCGTATGGGCTACTGT 57.579 37.500 0.00 0.00 0.00 3.55
421 551 6.369065 GGAAGAAAATATCGTATGGGCTACTG 59.631 42.308 0.00 0.00 0.00 2.74
422 552 6.270231 AGGAAGAAAATATCGTATGGGCTACT 59.730 38.462 0.00 0.00 0.00 2.57
423 553 6.369065 CAGGAAGAAAATATCGTATGGGCTAC 59.631 42.308 0.00 0.00 0.00 3.58
424 554 6.042781 ACAGGAAGAAAATATCGTATGGGCTA 59.957 38.462 0.00 0.00 0.00 3.93
425 555 5.163195 ACAGGAAGAAAATATCGTATGGGCT 60.163 40.000 0.00 0.00 0.00 5.19
426 556 5.063880 ACAGGAAGAAAATATCGTATGGGC 58.936 41.667 0.00 0.00 0.00 5.36
427 557 6.017109 CCAACAGGAAGAAAATATCGTATGGG 60.017 42.308 0.00 0.00 0.00 4.00
428 558 6.513393 GCCAACAGGAAGAAAATATCGTATGG 60.513 42.308 0.00 0.00 0.00 2.74
429 559 6.430451 GCCAACAGGAAGAAAATATCGTATG 58.570 40.000 0.00 0.00 0.00 2.39
430 560 5.531287 GGCCAACAGGAAGAAAATATCGTAT 59.469 40.000 0.00 0.00 0.00 3.06
431 561 4.879545 GGCCAACAGGAAGAAAATATCGTA 59.120 41.667 0.00 0.00 0.00 3.43
432 562 3.694566 GGCCAACAGGAAGAAAATATCGT 59.305 43.478 0.00 0.00 0.00 3.73
433 563 3.066760 GGGCCAACAGGAAGAAAATATCG 59.933 47.826 4.39 0.00 0.00 2.92
434 564 3.066760 CGGGCCAACAGGAAGAAAATATC 59.933 47.826 4.39 0.00 0.00 1.63
435 565 3.023832 CGGGCCAACAGGAAGAAAATAT 58.976 45.455 4.39 0.00 0.00 1.28
436 566 2.442413 CGGGCCAACAGGAAGAAAATA 58.558 47.619 4.39 0.00 0.00 1.40
437 567 1.256812 CGGGCCAACAGGAAGAAAAT 58.743 50.000 4.39 0.00 0.00 1.82
438 568 1.460273 GCGGGCCAACAGGAAGAAAA 61.460 55.000 4.39 0.00 0.00 2.29
439 569 1.901464 GCGGGCCAACAGGAAGAAA 60.901 57.895 4.39 0.00 0.00 2.52
440 570 2.282180 GCGGGCCAACAGGAAGAA 60.282 61.111 4.39 0.00 0.00 2.52
441 571 4.344865 GGCGGGCCAACAGGAAGA 62.345 66.667 4.39 0.00 35.81 2.87
458 588 4.341502 CTTGCGGCCCAAACGTGG 62.342 66.667 0.00 0.00 45.53 4.94
459 589 4.999939 GCTTGCGGCCCAAACGTG 63.000 66.667 0.00 0.00 31.94 4.49
461 591 4.404654 GAGCTTGCGGCCCAAACG 62.405 66.667 0.00 0.00 43.05 3.60
462 592 4.056125 GGAGCTTGCGGCCCAAAC 62.056 66.667 0.00 0.00 43.05 2.93
463 593 4.594854 TGGAGCTTGCGGCCCAAA 62.595 61.111 0.00 0.00 43.05 3.28
469 599 3.052082 CAGTGGTGGAGCTTGCGG 61.052 66.667 0.00 0.00 0.00 5.69
470 600 3.730761 GCAGTGGTGGAGCTTGCG 61.731 66.667 0.00 0.00 0.00 4.85
471 601 2.282040 AGCAGTGGTGGAGCTTGC 60.282 61.111 0.00 0.00 34.37 4.01
472 602 0.673022 GAGAGCAGTGGTGGAGCTTG 60.673 60.000 0.00 0.00 39.02 4.01
473 603 0.835543 AGAGAGCAGTGGTGGAGCTT 60.836 55.000 0.00 0.00 39.02 3.74
474 604 0.040351 TAGAGAGCAGTGGTGGAGCT 59.960 55.000 0.00 0.00 42.17 4.09
475 605 0.174617 GTAGAGAGCAGTGGTGGAGC 59.825 60.000 0.00 0.00 0.00 4.70
476 606 0.820871 GGTAGAGAGCAGTGGTGGAG 59.179 60.000 0.00 0.00 0.00 3.86
477 607 0.114364 TGGTAGAGAGCAGTGGTGGA 59.886 55.000 0.00 0.00 0.00 4.02
478 608 1.134580 CATGGTAGAGAGCAGTGGTGG 60.135 57.143 0.00 0.00 36.28 4.61
479 609 1.741732 GCATGGTAGAGAGCAGTGGTG 60.742 57.143 0.00 0.00 36.28 4.17
480 610 0.539051 GCATGGTAGAGAGCAGTGGT 59.461 55.000 0.00 0.00 36.28 4.16
481 611 0.179062 GGCATGGTAGAGAGCAGTGG 60.179 60.000 0.00 0.00 36.28 4.00
482 612 0.829333 AGGCATGGTAGAGAGCAGTG 59.171 55.000 0.00 0.00 36.28 3.66
483 613 1.577736 AAGGCATGGTAGAGAGCAGT 58.422 50.000 0.00 0.00 36.28 4.40
484 614 3.827008 TTAAGGCATGGTAGAGAGCAG 57.173 47.619 0.00 0.00 36.28 4.24
485 615 3.455910 ACATTAAGGCATGGTAGAGAGCA 59.544 43.478 0.00 0.00 37.51 4.26
486 616 3.812053 CACATTAAGGCATGGTAGAGAGC 59.188 47.826 0.00 0.00 0.00 4.09
496 626 2.459644 ACCATGTGCACATTAAGGCAT 58.540 42.857 29.48 10.35 42.75 4.40
505 635 1.608109 CACTTGCTAACCATGTGCACA 59.392 47.619 24.08 24.08 41.03 4.57
530 660 7.338800 AGGATGGTTTTACAGCATAAGATTG 57.661 36.000 0.00 0.00 43.99 2.67
536 666 8.271458 TGATAGAAAGGATGGTTTTACAGCATA 58.729 33.333 0.00 0.00 43.99 3.14
548 678 5.428253 TCTTTCCGTTGATAGAAAGGATGG 58.572 41.667 11.41 0.00 45.84 3.51
549 679 7.710907 TGTATCTTTCCGTTGATAGAAAGGATG 59.289 37.037 11.41 0.00 45.84 3.51
550 680 7.711339 GTGTATCTTTCCGTTGATAGAAAGGAT 59.289 37.037 11.41 7.33 45.84 3.24
557 687 6.106673 AGGTTGTGTATCTTTCCGTTGATAG 58.893 40.000 0.00 0.00 0.00 2.08
564 694 3.666902 CGCAAAGGTTGTGTATCTTTCCG 60.667 47.826 0.00 0.00 36.45 4.30
590 720 7.143340 CGGAGGAAGTATATATTTGTTCGTGA 58.857 38.462 0.00 0.00 0.00 4.35
597 727 9.542462 TTCAGAAACGGAGGAAGTATATATTTG 57.458 33.333 0.00 0.00 0.00 2.32
603 733 9.542462 CAAATATTCAGAAACGGAGGAAGTATA 57.458 33.333 0.00 0.00 0.00 1.47
608 738 8.801882 AATACAAATATTCAGAAACGGAGGAA 57.198 30.769 0.00 0.00 0.00 3.36
609 739 8.801882 AAATACAAATATTCAGAAACGGAGGA 57.198 30.769 0.00 0.00 30.27 3.71
610 740 8.893727 AGAAATACAAATATTCAGAAACGGAGG 58.106 33.333 0.00 0.00 30.27 4.30
628 758 9.996554 TCACTTGTTGAAATCTCTAGAAATACA 57.003 29.630 0.00 0.00 0.00 2.29
632 762 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
633 763 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
634 764 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
635 765 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
636 766 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
637 767 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
638 768 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
639 769 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
640 770 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
641 771 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
642 772 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
643 773 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
644 774 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
645 775 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
646 776 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
647 777 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
648 778 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
649 779 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
650 780 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
651 781 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
652 782 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
653 783 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
654 784 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
655 785 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
656 786 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
657 787 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
658 788 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
659 789 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
660 790 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
661 791 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
662 792 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
663 793 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
664 794 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
665 795 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
695 825 9.999009 CTATCACGTACGGATGTATATAAACAT 57.001 33.333 21.06 0.00 42.75 2.71
696 826 9.002600 ACTATCACGTACGGATGTATATAAACA 57.997 33.333 21.06 0.39 32.11 2.83
697 827 9.831737 AACTATCACGTACGGATGTATATAAAC 57.168 33.333 21.06 0.00 32.11 2.01
699 829 9.218440 TGAACTATCACGTACGGATGTATATAA 57.782 33.333 21.06 2.31 32.11 0.98
700 830 8.776376 TGAACTATCACGTACGGATGTATATA 57.224 34.615 21.06 3.41 32.11 0.86
701 831 7.677454 TGAACTATCACGTACGGATGTATAT 57.323 36.000 21.06 2.40 32.11 0.86
702 832 7.677454 ATGAACTATCACGTACGGATGTATA 57.323 36.000 21.06 8.35 38.69 1.47
703 833 6.570672 ATGAACTATCACGTACGGATGTAT 57.429 37.500 21.06 7.64 38.69 2.29
704 834 6.381481 AATGAACTATCACGTACGGATGTA 57.619 37.500 21.06 6.04 38.69 2.29
705 835 4.913335 ATGAACTATCACGTACGGATGT 57.087 40.909 21.06 14.99 38.69 3.06
706 836 5.746721 TCAAATGAACTATCACGTACGGATG 59.253 40.000 21.06 9.94 38.69 3.51
707 837 5.898174 TCAAATGAACTATCACGTACGGAT 58.102 37.500 21.06 19.67 38.69 4.18
708 838 5.313520 TCAAATGAACTATCACGTACGGA 57.686 39.130 21.06 14.09 38.69 4.69
709 839 6.397831 TTTCAAATGAACTATCACGTACGG 57.602 37.500 21.06 8.79 38.69 4.02
710 840 7.895870 AGATTTCAAATGAACTATCACGTACG 58.104 34.615 15.01 15.01 38.69 3.67
711 841 9.088512 AGAGATTTCAAATGAACTATCACGTAC 57.911 33.333 9.73 0.00 38.69 3.67
713 843 9.653287 TTAGAGATTTCAAATGAACTATCACGT 57.347 29.630 9.73 0.00 38.69 4.49
738 868 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
739 869 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
740 870 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
741 871 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
742 872 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
743 873 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
744 874 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
745 875 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
746 876 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
747 877 7.094032 CGTATACTCCCTCCGTTCCTAAATATT 60.094 40.741 0.56 0.00 0.00 1.28
748 878 6.376581 CGTATACTCCCTCCGTTCCTAAATAT 59.623 42.308 0.56 0.00 0.00 1.28
749 879 5.707298 CGTATACTCCCTCCGTTCCTAAATA 59.293 44.000 0.56 0.00 0.00 1.40
750 880 4.522022 CGTATACTCCCTCCGTTCCTAAAT 59.478 45.833 0.56 0.00 0.00 1.40
751 881 3.885297 CGTATACTCCCTCCGTTCCTAAA 59.115 47.826 0.56 0.00 0.00 1.85
752 882 3.136443 TCGTATACTCCCTCCGTTCCTAA 59.864 47.826 0.56 0.00 0.00 2.69
753 883 2.705658 TCGTATACTCCCTCCGTTCCTA 59.294 50.000 0.56 0.00 0.00 2.94
754 884 1.492176 TCGTATACTCCCTCCGTTCCT 59.508 52.381 0.56 0.00 0.00 3.36
755 885 1.972872 TCGTATACTCCCTCCGTTCC 58.027 55.000 0.56 0.00 0.00 3.62
756 886 4.999950 TCTTATCGTATACTCCCTCCGTTC 59.000 45.833 0.56 0.00 0.00 3.95
757 887 4.978099 TCTTATCGTATACTCCCTCCGTT 58.022 43.478 0.56 0.00 0.00 4.44
758 888 4.630644 TCTTATCGTATACTCCCTCCGT 57.369 45.455 0.56 0.00 0.00 4.69
759 889 4.395542 CCTTCTTATCGTATACTCCCTCCG 59.604 50.000 0.56 0.00 0.00 4.63
760 890 4.705991 CCCTTCTTATCGTATACTCCCTCC 59.294 50.000 0.56 0.00 0.00 4.30
761 891 5.323581 ACCCTTCTTATCGTATACTCCCTC 58.676 45.833 0.56 0.00 0.00 4.30
762 892 5.336491 ACCCTTCTTATCGTATACTCCCT 57.664 43.478 0.56 0.00 0.00 4.20
763 893 5.537674 TGAACCCTTCTTATCGTATACTCCC 59.462 44.000 0.56 0.00 0.00 4.30
764 894 6.645790 TGAACCCTTCTTATCGTATACTCC 57.354 41.667 0.56 0.00 0.00 3.85
765 895 6.922407 GGTTGAACCCTTCTTATCGTATACTC 59.078 42.308 2.08 0.00 30.04 2.59
766 896 6.460676 CGGTTGAACCCTTCTTATCGTATACT 60.461 42.308 9.08 0.00 33.75 2.12
767 897 5.689068 CGGTTGAACCCTTCTTATCGTATAC 59.311 44.000 9.08 0.00 33.75 1.47
768 898 5.593909 TCGGTTGAACCCTTCTTATCGTATA 59.406 40.000 9.08 0.00 33.75 1.47
769 899 4.403432 TCGGTTGAACCCTTCTTATCGTAT 59.597 41.667 9.08 0.00 33.75 3.06
770 900 3.763360 TCGGTTGAACCCTTCTTATCGTA 59.237 43.478 9.08 0.00 33.75 3.43
771 901 2.564062 TCGGTTGAACCCTTCTTATCGT 59.436 45.455 9.08 0.00 33.75 3.73
772 902 3.241067 TCGGTTGAACCCTTCTTATCG 57.759 47.619 9.08 0.00 33.75 2.92
773 903 5.667466 TGTATCGGTTGAACCCTTCTTATC 58.333 41.667 9.08 0.00 33.75 1.75
790 920 6.583912 ATTTGTGTATCTTCGGTTGTATCG 57.416 37.500 0.00 0.00 0.00 2.92
795 925 5.432157 GCGATATTTGTGTATCTTCGGTTG 58.568 41.667 0.00 0.00 0.00 3.77
800 930 7.757097 ATATCCGCGATATTTGTGTATCTTC 57.243 36.000 8.23 0.00 32.00 2.87
819 949 7.436118 TGCCCCGTATTAATTATCGTATATCC 58.564 38.462 0.00 0.00 0.00 2.59
820 950 8.876275 TTGCCCCGTATTAATTATCGTATATC 57.124 34.615 0.00 0.00 0.00 1.63
823 953 9.841295 ATATTTGCCCCGTATTAATTATCGTAT 57.159 29.630 0.00 0.00 0.00 3.06
824 954 9.316730 GATATTTGCCCCGTATTAATTATCGTA 57.683 33.333 0.00 0.00 0.00 3.43
825 955 7.010738 CGATATTTGCCCCGTATTAATTATCGT 59.989 37.037 0.00 0.00 35.89 3.73
826 956 7.010738 ACGATATTTGCCCCGTATTAATTATCG 59.989 37.037 13.35 13.35 40.70 2.92
827 957 8.120465 CACGATATTTGCCCCGTATTAATTATC 58.880 37.037 0.00 0.00 33.62 1.75
829 959 6.935771 ACACGATATTTGCCCCGTATTAATTA 59.064 34.615 0.00 0.00 33.62 1.40
831 961 5.310451 ACACGATATTTGCCCCGTATTAAT 58.690 37.500 0.00 0.00 33.62 1.40
832 962 4.706035 ACACGATATTTGCCCCGTATTAA 58.294 39.130 0.00 0.00 33.62 1.40
835 965 2.922740 ACACGATATTTGCCCCGTAT 57.077 45.000 0.00 0.00 33.62 3.06
836 966 3.815856 TTACACGATATTTGCCCCGTA 57.184 42.857 0.00 0.00 33.62 4.02
838 968 2.289547 CCTTTACACGATATTTGCCCCG 59.710 50.000 0.00 0.00 0.00 5.73
839 969 2.621526 CCCTTTACACGATATTTGCCCC 59.378 50.000 0.00 0.00 0.00 5.80
840 970 2.621526 CCCCTTTACACGATATTTGCCC 59.378 50.000 0.00 0.00 0.00 5.36
841 971 3.547746 TCCCCTTTACACGATATTTGCC 58.452 45.455 0.00 0.00 0.00 4.52
842 972 4.879545 TCTTCCCCTTTACACGATATTTGC 59.120 41.667 0.00 0.00 0.00 3.68
843 973 8.848474 ATATCTTCCCCTTTACACGATATTTG 57.152 34.615 0.00 0.00 0.00 2.32
845 975 8.248945 CGTATATCTTCCCCTTTACACGATATT 58.751 37.037 0.00 0.00 0.00 1.28
847 977 6.942005 TCGTATATCTTCCCCTTTACACGATA 59.058 38.462 0.00 0.00 30.60 2.92
848 978 5.771666 TCGTATATCTTCCCCTTTACACGAT 59.228 40.000 0.00 0.00 30.60 3.73
849 979 5.132502 TCGTATATCTTCCCCTTTACACGA 58.867 41.667 0.00 0.00 32.86 4.35
850 980 5.443185 TCGTATATCTTCCCCTTTACACG 57.557 43.478 0.00 0.00 0.00 4.49
926 1066 7.779798 GCAGTTCTATCTCTATCTATCTCCCAT 59.220 40.741 0.00 0.00 0.00 4.00
978 1128 2.630098 AGTTTCTGCTACAGCTCTCACA 59.370 45.455 2.44 0.00 42.66 3.58
1081 1585 2.801699 CGGGCTTCCCTGTTTTGTTTTC 60.802 50.000 0.00 0.00 42.67 2.29
1368 1888 1.528776 GATCGGCGGAGTAGTCCCT 60.529 63.158 11.16 0.00 40.20 4.20
1434 1954 3.370061 CGGAGGAACGATTACAAGAAACC 59.630 47.826 0.00 0.00 35.47 3.27
1552 2072 2.370519 TCAAGGATCAAACAAGGGACGA 59.629 45.455 0.00 0.00 0.00 4.20
1651 2175 4.717629 TGCGGACGGAAGCACGAG 62.718 66.667 2.50 0.00 38.59 4.18
1772 2299 8.830580 CAGTAATGATTAATCCGTGAAATCAGT 58.169 33.333 12.90 0.00 41.50 3.41
1773 2300 9.045223 TCAGTAATGATTAATCCGTGAAATCAG 57.955 33.333 12.90 0.00 41.50 2.90
1774 2301 8.956533 TCAGTAATGATTAATCCGTGAAATCA 57.043 30.769 12.90 0.00 42.17 2.57
2059 2594 4.537135 AGAAAAGATCTGTCCGCTACAA 57.463 40.909 0.00 0.00 37.74 2.41
2078 2613 9.868160 AATTAAAGAAGAAGAAAGGAAGGAAGA 57.132 29.630 0.00 0.00 0.00 2.87
2118 2657 1.067071 CCTAGAACTCCCACGGAACAC 60.067 57.143 0.00 0.00 0.00 3.32
2170 2709 2.164338 GACGGGGGAAACTGCATTTAA 58.836 47.619 0.00 0.00 0.00 1.52
2202 2741 3.489398 GCAGTCTACTACAGTTCATCCCG 60.489 52.174 0.00 0.00 0.00 5.14
2281 2836 0.321564 TTTGCGTGATCTGGTGGGAG 60.322 55.000 0.00 0.00 0.00 4.30
2439 2996 8.723942 TTCTCTTGGTGATTAGAATAAGAAGC 57.276 34.615 0.00 0.00 0.00 3.86
2452 3010 7.587037 TTCAAACAAAGATTCTCTTGGTGAT 57.413 32.000 0.00 0.00 39.63 3.06
2632 3190 7.013529 CGGAAGGAGTAAAAATTAGTGTTTCG 58.986 38.462 0.00 0.00 0.00 3.46
2653 3211 4.525487 ACGCTCTTATATTATGGGACGGAA 59.475 41.667 0.00 0.00 0.00 4.30
2788 3346 6.671614 TTGAACTGTCAAAACGTCTTACAT 57.328 33.333 0.00 0.00 40.87 2.29
3302 3861 6.877611 AACTAAATTTTCTGCGAGGAAAGA 57.122 33.333 0.00 0.00 36.69 2.52
3311 3870 6.424812 ACTTCATGCCAAACTAAATTTTCTGC 59.575 34.615 0.00 0.00 0.00 4.26
3604 4319 6.201806 GCAACACATGTAAACCAATTTAAGCA 59.798 34.615 0.00 0.00 32.04 3.91
3737 4452 1.105457 GTCCATTTGCAGCCATAGCA 58.895 50.000 0.00 0.00 43.56 3.49
3886 4601 7.070074 TCTCTTGGTAGGGATTTCTCATAGTTC 59.930 40.741 0.00 0.00 0.00 3.01
3996 4712 6.894339 ACAGGTTGAAAGGATCGTAAAATT 57.106 33.333 0.00 0.00 0.00 1.82
4003 4719 8.888579 AATACTAATACAGGTTGAAAGGATCG 57.111 34.615 0.00 0.00 0.00 3.69
4167 4886 5.295292 CACATTCACTGGCATTACCTCTTAG 59.705 44.000 0.00 0.00 40.22 2.18
4353 5083 4.701651 CCACTTCTTTTGCAGTGATATCCA 59.298 41.667 0.00 0.00 44.55 3.41
4480 5210 6.396829 ACTTTTCCTGATTTCCTTGTCAAG 57.603 37.500 5.53 5.53 0.00 3.02
4486 5216 7.563556 TCTTGGTTTACTTTTCCTGATTTCCTT 59.436 33.333 0.00 0.00 0.00 3.36
4608 5338 3.736094 AGGGAGTGAATCAAGACCCATA 58.264 45.455 17.96 0.00 39.73 2.74
5472 6202 4.332268 GCAACCTCTCTAGCAATTTCTCTG 59.668 45.833 0.00 0.00 0.00 3.35
5553 6283 4.514441 ACAAACTGTGAGCTTTCATCTGAG 59.486 41.667 0.00 0.00 0.00 3.35
5908 6638 0.037160 TTGCTGCTGATGCCAAGAGA 59.963 50.000 0.00 0.00 38.71 3.10
6190 6920 4.869861 CACATGTATCTCACGGTCAATCAA 59.130 41.667 0.00 0.00 0.00 2.57
6200 6930 5.126222 TCCTGAGAACTCACATGTATCTCAC 59.874 44.000 20.21 7.42 41.01 3.51
6418 7148 5.095490 GTCAAAATTAGGAACATGAAGGCG 58.905 41.667 0.00 0.00 0.00 5.52
6556 7287 8.340757 GGGGGAAAAATGGGATATACATGTATA 58.659 37.037 24.22 24.22 33.09 1.47
6566 7482 3.600617 ACAAGAGGGGGAAAAATGGGATA 59.399 43.478 0.00 0.00 0.00 2.59
7267 8185 2.291741 CAGGATATTCGGAAAAGCAGCC 59.708 50.000 0.00 0.00 0.00 4.85
7769 8687 2.373836 TGAGAAATTTCCCGGAGTTCCA 59.626 45.455 14.61 0.00 35.14 3.53
7770 8688 3.067684 TGAGAAATTTCCCGGAGTTCC 57.932 47.619 14.61 0.00 0.00 3.62
7944 8863 8.685427 CCAAAATTTCACATGTATACTCCATCA 58.315 33.333 0.00 0.00 0.00 3.07
7977 8898 3.227614 AGGCTAATGCATGCATGATCAA 58.772 40.909 32.79 15.11 41.91 2.57
7986 8907 4.178540 CAAACAAGGAAGGCTAATGCATG 58.821 43.478 0.00 0.00 41.91 4.06
7989 8910 2.562738 ACCAAACAAGGAAGGCTAATGC 59.437 45.455 0.00 0.00 38.76 3.56
7990 8911 5.010282 AGTACCAAACAAGGAAGGCTAATG 58.990 41.667 0.00 0.00 0.00 1.90
8015 8936 6.584942 TGTAACGCAGAGTCAAAACATACTAG 59.415 38.462 0.00 0.00 0.00 2.57
8018 8939 5.585500 TGTAACGCAGAGTCAAAACATAC 57.415 39.130 0.00 0.00 0.00 2.39
8019 8940 5.929415 TCATGTAACGCAGAGTCAAAACATA 59.071 36.000 0.00 0.00 0.00 2.29
8020 8941 4.754618 TCATGTAACGCAGAGTCAAAACAT 59.245 37.500 0.00 0.00 0.00 2.71
8031 8952 3.065786 AGGCATCATTTCATGTAACGCAG 59.934 43.478 0.00 0.00 0.00 5.18
8034 8955 5.401550 ACAAAGGCATCATTTCATGTAACG 58.598 37.500 0.00 0.00 0.00 3.18
8071 8992 2.287769 GCCAAAGAAGATGGAGCTCTC 58.712 52.381 14.64 4.08 40.56 3.20
8072 8993 1.406614 CGCCAAAGAAGATGGAGCTCT 60.407 52.381 14.64 0.00 40.56 4.09
8073 8994 1.012841 CGCCAAAGAAGATGGAGCTC 58.987 55.000 4.71 4.71 40.56 4.09
8074 8995 3.165606 CGCCAAAGAAGATGGAGCT 57.834 52.632 0.00 0.00 40.56 4.09
8076 8997 0.393537 AGGCGCCAAAGAAGATGGAG 60.394 55.000 31.54 0.00 40.56 3.86
8077 8998 0.392998 GAGGCGCCAAAGAAGATGGA 60.393 55.000 31.54 0.00 40.56 3.41
8080 9001 1.271597 ACAAGAGGCGCCAAAGAAGAT 60.272 47.619 31.54 4.27 0.00 2.40
8081 9002 0.108585 ACAAGAGGCGCCAAAGAAGA 59.891 50.000 31.54 0.00 0.00 2.87
8082 9003 0.239347 CACAAGAGGCGCCAAAGAAG 59.761 55.000 31.54 15.33 0.00 2.85
8091 9013 2.401766 GCATCACCCACAAGAGGCG 61.402 63.158 0.00 0.00 31.65 5.52
8112 9034 1.311859 CAAGAAGCAGCAACCACAGA 58.688 50.000 0.00 0.00 0.00 3.41
8211 9133 4.778143 GGTGGCAGAACCGGCGAT 62.778 66.667 9.30 0.00 43.94 4.58
8253 9175 2.604079 CCAATGGCCAGGGCAACA 60.604 61.111 21.65 5.95 42.43 3.33
8264 9186 1.610086 ACACCACATGCCCCAATGG 60.610 57.895 0.00 0.00 38.26 3.16
8265 9187 1.186917 ACACACCACATGCCCCAATG 61.187 55.000 0.00 0.00 0.00 2.82
8266 9188 1.155859 ACACACCACATGCCCCAAT 59.844 52.632 0.00 0.00 0.00 3.16
8267 9189 1.831726 CACACACCACATGCCCCAA 60.832 57.895 0.00 0.00 0.00 4.12
8270 9192 0.895100 ATCACACACACCACATGCCC 60.895 55.000 0.00 0.00 0.00 5.36
8271 9193 0.523072 GATCACACACACCACATGCC 59.477 55.000 0.00 0.00 0.00 4.40
8272 9194 0.523072 GGATCACACACACCACATGC 59.477 55.000 0.00 0.00 0.00 4.06
8273 9195 0.798159 CGGATCACACACACCACATG 59.202 55.000 0.00 0.00 0.00 3.21
8274 9196 0.321564 CCGGATCACACACACCACAT 60.322 55.000 0.00 0.00 0.00 3.21
8275 9197 1.070615 CCGGATCACACACACCACA 59.929 57.895 0.00 0.00 0.00 4.17
8276 9198 2.325082 GCCGGATCACACACACCAC 61.325 63.158 5.05 0.00 0.00 4.16
8277 9199 2.031919 GCCGGATCACACACACCA 59.968 61.111 5.05 0.00 0.00 4.17
8278 9200 1.741770 GAGCCGGATCACACACACC 60.742 63.158 16.44 0.00 0.00 4.16
8293 9215 0.318762 ACGAGGAACAGTTGGAGAGC 59.681 55.000 0.00 0.00 0.00 4.09
8321 9243 4.838986 GTGCCCAAGGGATCTAATCTACTA 59.161 45.833 9.92 0.00 37.50 1.82
8323 9245 3.555168 CGTGCCCAAGGGATCTAATCTAC 60.555 52.174 9.92 0.00 37.50 2.59
8334 9256 1.524621 CAGATAGCGTGCCCAAGGG 60.525 63.158 0.00 0.00 38.57 3.95
8427 9360 2.884639 GGATGTACAAAAGCAGTGGTGT 59.115 45.455 0.00 0.00 0.00 4.16
8430 9363 4.582701 TTTGGATGTACAAAAGCAGTGG 57.417 40.909 0.00 0.00 37.40 4.00
8449 9387 9.432982 TGTTGGCTAGATTTATATTGGGATTTT 57.567 29.630 0.00 0.00 0.00 1.82
8457 9395 7.670979 TGGATGCATGTTGGCTAGATTTATATT 59.329 33.333 2.46 0.00 34.04 1.28
8516 9474 3.082579 GCTACACTCTCCAGGCGGG 62.083 68.421 0.00 0.00 38.37 6.13
8519 9477 1.153469 GCTGCTACACTCTCCAGGC 60.153 63.158 0.00 0.00 0.00 4.85
8521 9479 0.975040 AGGGCTGCTACACTCTCCAG 60.975 60.000 0.00 0.00 0.00 3.86
8522 9480 0.972983 GAGGGCTGCTACACTCTCCA 60.973 60.000 0.00 0.00 0.00 3.86
8524 9482 1.681486 GGGAGGGCTGCTACACTCTC 61.681 65.000 8.43 1.22 0.00 3.20
8525 9483 1.687493 GGGAGGGCTGCTACACTCT 60.687 63.158 8.43 0.00 0.00 3.24
8526 9484 1.553690 TTGGGAGGGCTGCTACACTC 61.554 60.000 0.00 0.61 0.00 3.51
8527 9485 1.538876 TTGGGAGGGCTGCTACACT 60.539 57.895 0.00 0.00 0.00 3.55
8530 9489 1.078143 CTGTTGGGAGGGCTGCTAC 60.078 63.158 0.00 0.00 0.00 3.58
8535 9494 0.474660 AGAACTCTGTTGGGAGGGCT 60.475 55.000 0.00 0.00 37.63 5.19
8567 9526 3.364441 GCCATCTTGGTGCGTGCA 61.364 61.111 0.00 0.00 40.46 4.57
8607 9572 3.540014 CGTCAGAGCAAGCGCGAG 61.540 66.667 12.10 0.00 45.49 5.03
8721 9686 2.741092 CACCGGCACTACCACTGT 59.259 61.111 0.00 0.00 39.03 3.55
8806 9780 3.977244 GGTTGGCCGTTGCACCAG 61.977 66.667 0.00 0.00 40.13 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.