Multiple sequence alignment - TraesCS4D01G202900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G202900 chr4D 100.000 7889 0 0 1 7889 349567435 349575323 0.000000e+00 14569.0
1 TraesCS4D01G202900 chr4A 96.136 4451 127 17 2973 7397 115287582 115283151 0.000000e+00 7225.0
2 TraesCS4D01G202900 chr4A 95.129 2443 74 15 542 2947 115291117 115288683 0.000000e+00 3810.0
3 TraesCS4D01G202900 chr4A 86.250 480 64 2 1 480 115291595 115291118 3.260000e-143 520.0
4 TraesCS4D01G202900 chr4A 83.062 307 32 10 7561 7863 115283149 115282859 2.180000e-65 261.0
5 TraesCS4D01G202900 chr4B 96.612 3926 113 10 3212 7131 432817385 432821296 0.000000e+00 6495.0
6 TraesCS4D01G202900 chr4B 94.879 2363 82 16 621 2949 432814305 432816662 0.000000e+00 3657.0
7 TraesCS4D01G202900 chr4B 93.805 339 14 3 7551 7889 432822890 432823221 3.290000e-138 503.0
8 TraesCS4D01G202900 chr4B 95.167 269 13 0 2938 3206 432817028 432817296 7.320000e-115 425.0
9 TraesCS4D01G202900 chr4B 96.032 252 4 4 7149 7394 432822642 432822893 9.530000e-109 405.0
10 TraesCS4D01G202900 chr7D 95.122 164 8 0 7391 7554 414094770 414094933 7.850000e-65 259.0
11 TraesCS4D01G202900 chr3A 93.333 165 11 0 7390 7554 523738638 523738474 2.200000e-60 244.0
12 TraesCS4D01G202900 chr3D 92.353 170 13 0 7389 7558 46578038 46577869 7.910000e-60 243.0
13 TraesCS4D01G202900 chr3D 92.262 168 12 1 7387 7554 426479791 426479957 3.680000e-58 237.0
14 TraesCS4D01G202900 chr3D 82.114 123 18 4 4986 5106 103824722 103824842 1.400000e-17 102.0
15 TraesCS4D01G202900 chr6B 92.814 167 11 1 7389 7554 601199600 601199434 2.840000e-59 241.0
16 TraesCS4D01G202900 chr2B 93.252 163 11 0 7393 7555 291855168 291855006 2.840000e-59 241.0
17 TraesCS4D01G202900 chr3B 92.262 168 12 1 7387 7554 540174924 540175090 3.680000e-58 237.0
18 TraesCS4D01G202900 chr5B 90.164 183 14 4 7387 7568 474318341 474318520 1.320000e-57 235.0
19 TraesCS4D01G202900 chr1B 92.216 167 12 1 7393 7559 183877361 183877196 1.320000e-57 235.0
20 TraesCS4D01G202900 chr1D 77.863 131 20 9 4977 5102 439932025 439931899 1.100000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G202900 chr4D 349567435 349575323 7888 False 14569 14569 100.00000 1 7889 1 chr4D.!!$F1 7888
1 TraesCS4D01G202900 chr4A 115282859 115291595 8736 True 2954 7225 90.14425 1 7863 4 chr4A.!!$R1 7862
2 TraesCS4D01G202900 chr4B 432814305 432823221 8916 False 2297 6495 95.29900 621 7889 5 chr4B.!!$F1 7268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.038744 AAGCACCAGATGACCCCTTG 59.961 55.000 0.00 0.00 0.00 3.61 F
640 641 0.103208 GATCCAAGATCCGTGCTCGT 59.897 55.000 7.47 0.00 35.01 4.18 F
644 645 0.926155 CAAGATCCGTGCTCGTCATG 59.074 55.000 7.47 0.00 35.01 3.07 F
664 665 1.348594 GACGGCTAGCAACGCATTC 59.651 57.895 18.24 2.14 0.00 2.67 F
1537 1545 1.630126 AAGCGGATGAGCCCATGACT 61.630 55.000 0.00 0.00 38.01 3.41 F
1600 1608 2.045340 CCGTCCATGGTGGGTTCC 60.045 66.667 12.58 0.00 38.32 3.62 F
2867 2912 1.761206 ATTTGCGCAAACACGTAACC 58.239 45.000 35.76 0.00 37.37 2.85 F
2872 2917 2.353889 TGCGCAAACACGTAACCTTTTA 59.646 40.909 8.16 0.00 34.88 1.52 F
3115 4423 2.577772 AATCCTAGGCCCTCAAGTCT 57.422 50.000 2.96 0.00 0.00 3.24 F
3618 5009 3.191162 TCAGAATCCCTTGCAAATTCGTG 59.809 43.478 13.88 12.55 35.14 4.35 F
4004 5395 4.331968 AGTGAAAATTTGTCGCCCTATGA 58.668 39.130 0.00 0.00 0.00 2.15 F
5474 6866 2.609002 CACTTGAAAGCAAAGGTTTGGC 59.391 45.455 4.67 0.00 38.57 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1226 1234 0.754217 TAGTAGCGATTCCCCTGCGT 60.754 55.000 0.00 0.00 0.00 5.24 R
2480 2525 2.249844 ACGGTTCCTGGTTGTGTTAG 57.750 50.000 0.00 0.00 0.00 2.34 R
2585 2630 8.707938 AGCCATATCAATTGCTTTCTTAAAAC 57.292 30.769 0.00 0.00 30.12 2.43 R
2694 2739 7.090173 CCTTACGAATCAACCACATGAAAAAT 58.910 34.615 0.00 0.00 32.06 1.82 R
2741 2786 1.530293 GCGATGCTATTTGCTCTCCTG 59.470 52.381 0.00 0.00 43.37 3.86 R
3618 5009 0.249031 ACGCTTTTCTGCTTTGGTGC 60.249 50.000 0.00 0.00 0.00 5.01 R
4407 5799 1.263356 TCTACCTCAAGTTGACCCCG 58.737 55.000 0.08 0.00 0.00 5.73 R
4592 5984 5.615289 ACTCTGCCAGGTGAATTACATATC 58.385 41.667 0.00 0.00 0.00 1.63 R
4816 6208 5.899299 AGTCATAATTCAAAGCTGCAATCC 58.101 37.500 1.02 0.00 0.00 3.01 R
5238 6630 2.357637 CGAAAAACTGTGGAGCCTTCAA 59.642 45.455 0.00 0.00 0.00 2.69 R
5843 7235 1.514657 CACGCATGCGGAAACATGG 60.515 57.895 39.95 16.73 46.14 3.66 R
7012 8419 1.669115 CGACCTTCACAGGGTGCAG 60.669 63.158 0.00 0.00 46.01 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.755008 GAGGGTGACGGAGGAGAGG 60.755 68.421 0.00 0.00 0.00 3.69
33 34 0.252284 ACGGAGGAGAGGTTGGTGAT 60.252 55.000 0.00 0.00 0.00 3.06
37 38 0.178861 AGGAGAGGTTGGTGATGGGT 60.179 55.000 0.00 0.00 0.00 4.51
48 49 1.992834 TGATGGGTAGCCGCTTCCA 60.993 57.895 16.99 15.87 0.00 3.53
52 53 2.590092 GGTAGCCGCTTCCACCAT 59.410 61.111 10.99 0.00 0.00 3.55
54 55 1.220749 GTAGCCGCTTCCACCATGA 59.779 57.895 0.00 0.00 0.00 3.07
55 56 1.090052 GTAGCCGCTTCCACCATGAC 61.090 60.000 0.00 0.00 0.00 3.06
56 57 1.264749 TAGCCGCTTCCACCATGACT 61.265 55.000 0.00 0.00 0.00 3.41
65 66 3.640407 ACCATGACTGTGGGCGCT 61.640 61.111 7.64 0.00 43.77 5.92
68 69 4.334118 ATGACTGTGGGCGCTGCA 62.334 61.111 7.64 2.96 0.00 4.41
69 70 4.994471 TGACTGTGGGCGCTGCAG 62.994 66.667 10.11 10.11 36.41 4.41
88 89 4.070552 AGCAACTCGTCGCCTCCC 62.071 66.667 0.00 0.00 0.00 4.30
119 120 3.061848 CGGCAACCATCACCCACC 61.062 66.667 0.00 0.00 0.00 4.61
128 129 4.845307 TCACCCACCCCACCCACA 62.845 66.667 0.00 0.00 0.00 4.17
137 138 0.611896 CCCCACCCACATTTGTCTCC 60.612 60.000 0.00 0.00 0.00 3.71
139 140 0.112218 CCACCCACATTTGTCTCCCA 59.888 55.000 0.00 0.00 0.00 4.37
148 149 1.257743 TTTGTCTCCCACTCTCTCGG 58.742 55.000 0.00 0.00 0.00 4.63
167 168 1.450312 CGAAGCACCAGATGACCCC 60.450 63.158 0.00 0.00 0.00 4.95
168 169 1.903877 CGAAGCACCAGATGACCCCT 61.904 60.000 0.00 0.00 0.00 4.79
169 170 0.329596 GAAGCACCAGATGACCCCTT 59.670 55.000 0.00 0.00 0.00 3.95
170 171 0.038744 AAGCACCAGATGACCCCTTG 59.961 55.000 0.00 0.00 0.00 3.61
171 172 2.048603 GCACCAGATGACCCCTTGC 61.049 63.158 0.00 0.00 0.00 4.01
172 173 1.746615 CACCAGATGACCCCTTGCG 60.747 63.158 0.00 0.00 0.00 4.85
183 184 3.411517 CCTTGCGACCCCTCCCAT 61.412 66.667 0.00 0.00 0.00 4.00
185 186 2.609299 TTGCGACCCCTCCCATGA 60.609 61.111 0.00 0.00 0.00 3.07
206 207 3.054503 GGCACACAGCTGAGGCAG 61.055 66.667 23.35 8.38 44.79 4.85
215 216 4.056125 CTGAGGCAGCGACCGACA 62.056 66.667 0.00 0.00 33.69 4.35
216 217 3.362399 CTGAGGCAGCGACCGACAT 62.362 63.158 0.00 0.00 33.69 3.06
224 225 2.047274 CGACCGACATGTTGGCCT 60.047 61.111 29.12 13.18 37.67 5.19
241 242 2.033448 TGTGATGGGGCGGTCAAC 59.967 61.111 0.00 0.00 0.00 3.18
308 309 2.990479 GTGCCTCCTCCCACGATT 59.010 61.111 0.00 0.00 0.00 3.34
329 330 2.285743 GTGAGGGGAGGAGGCCTT 60.286 66.667 6.77 0.00 31.76 4.35
365 366 3.414700 GCACAGCGTCACCCTTCG 61.415 66.667 0.00 0.00 0.00 3.79
409 410 0.673985 GAACAGACCAACCAAAGCCC 59.326 55.000 0.00 0.00 0.00 5.19
437 438 2.745968 AGTTCTCTGATGAGGTCCTCC 58.254 52.381 16.60 2.29 40.58 4.30
441 442 0.395862 TCTGATGAGGTCCTCCCGTC 60.396 60.000 16.60 11.81 38.74 4.79
471 472 3.864686 GCATTCGCGACGCCACAT 61.865 61.111 9.15 0.00 0.00 3.21
472 473 2.321060 CATTCGCGACGCCACATC 59.679 61.111 9.15 0.00 0.00 3.06
477 478 3.799755 GCGACGCCACATCAACCC 61.800 66.667 9.14 0.00 0.00 4.11
480 481 3.599285 GACGCCACATCAACCCCGA 62.599 63.158 0.00 0.00 0.00 5.14
481 482 3.124921 CGCCACATCAACCCCGAC 61.125 66.667 0.00 0.00 0.00 4.79
482 483 2.033448 GCCACATCAACCCCGACA 59.967 61.111 0.00 0.00 0.00 4.35
483 484 1.378514 GCCACATCAACCCCGACAT 60.379 57.895 0.00 0.00 0.00 3.06
484 485 1.656818 GCCACATCAACCCCGACATG 61.657 60.000 0.00 0.00 0.00 3.21
485 486 1.656818 CCACATCAACCCCGACATGC 61.657 60.000 0.00 0.00 0.00 4.06
486 487 0.677731 CACATCAACCCCGACATGCT 60.678 55.000 0.00 0.00 0.00 3.79
487 488 0.677731 ACATCAACCCCGACATGCTG 60.678 55.000 0.00 0.00 0.00 4.41
488 489 0.677731 CATCAACCCCGACATGCTGT 60.678 55.000 0.00 0.00 0.00 4.40
489 490 0.392998 ATCAACCCCGACATGCTGTC 60.393 55.000 0.00 6.31 43.65 3.51
499 500 3.257469 GACATGCTGTCATCTTCTCCA 57.743 47.619 10.30 0.00 46.22 3.86
500 501 3.196463 GACATGCTGTCATCTTCTCCAG 58.804 50.000 10.30 0.00 46.22 3.86
501 502 2.836372 ACATGCTGTCATCTTCTCCAGA 59.164 45.455 0.00 0.00 35.33 3.86
502 503 3.118702 ACATGCTGTCATCTTCTCCAGAG 60.119 47.826 0.00 0.00 33.87 3.35
503 504 1.829849 TGCTGTCATCTTCTCCAGAGG 59.170 52.381 0.00 0.00 33.87 3.69
504 505 1.830477 GCTGTCATCTTCTCCAGAGGT 59.170 52.381 0.00 0.00 34.68 3.85
505 506 2.159114 GCTGTCATCTTCTCCAGAGGTC 60.159 54.545 0.00 0.00 34.68 3.85
506 507 3.364549 CTGTCATCTTCTCCAGAGGTCT 58.635 50.000 0.00 0.00 34.68 3.85
507 508 3.360867 TGTCATCTTCTCCAGAGGTCTC 58.639 50.000 0.00 0.00 34.68 3.36
508 509 3.011144 TGTCATCTTCTCCAGAGGTCTCT 59.989 47.826 0.00 0.00 41.37 3.10
509 510 3.632145 GTCATCTTCTCCAGAGGTCTCTC 59.368 52.174 0.00 0.00 37.98 3.20
510 511 2.411628 TCTTCTCCAGAGGTCTCTCG 57.588 55.000 0.00 0.00 44.47 4.04
511 512 0.738389 CTTCTCCAGAGGTCTCTCGC 59.262 60.000 0.00 0.00 44.47 5.03
512 513 0.329931 TTCTCCAGAGGTCTCTCGCT 59.670 55.000 0.00 0.00 44.47 4.93
513 514 0.107410 TCTCCAGAGGTCTCTCGCTC 60.107 60.000 0.00 0.00 44.47 5.03
514 515 1.436195 CTCCAGAGGTCTCTCGCTCG 61.436 65.000 0.00 0.00 44.47 5.03
515 516 2.407210 CAGAGGTCTCTCGCTCGC 59.593 66.667 0.00 0.00 44.47 5.03
516 517 3.199190 AGAGGTCTCTCGCTCGCG 61.199 66.667 0.00 0.00 44.47 5.87
517 518 3.196394 GAGGTCTCTCGCTCGCGA 61.196 66.667 9.26 9.26 46.87 5.87
525 526 4.944249 TCGCTCGCGAATGGATAG 57.056 55.556 11.33 0.00 46.01 2.08
526 527 2.327228 TCGCTCGCGAATGGATAGA 58.673 52.632 11.33 0.00 46.01 1.98
527 528 0.238553 TCGCTCGCGAATGGATAGAG 59.761 55.000 11.33 0.00 46.01 2.43
528 529 0.730834 CGCTCGCGAATGGATAGAGG 60.731 60.000 11.33 0.00 42.83 3.69
529 530 0.389166 GCTCGCGAATGGATAGAGGG 60.389 60.000 11.33 0.00 0.00 4.30
530 531 0.244994 CTCGCGAATGGATAGAGGGG 59.755 60.000 11.33 0.00 0.00 4.79
531 532 0.178973 TCGCGAATGGATAGAGGGGA 60.179 55.000 6.20 0.00 0.00 4.81
532 533 0.679505 CGCGAATGGATAGAGGGGAA 59.320 55.000 0.00 0.00 0.00 3.97
533 534 1.276421 CGCGAATGGATAGAGGGGAAT 59.724 52.381 0.00 0.00 0.00 3.01
534 535 2.704572 GCGAATGGATAGAGGGGAATG 58.295 52.381 0.00 0.00 0.00 2.67
535 536 2.303022 GCGAATGGATAGAGGGGAATGA 59.697 50.000 0.00 0.00 0.00 2.57
536 537 3.618507 GCGAATGGATAGAGGGGAATGAG 60.619 52.174 0.00 0.00 0.00 2.90
537 538 3.834813 CGAATGGATAGAGGGGAATGAGA 59.165 47.826 0.00 0.00 0.00 3.27
538 539 4.322349 CGAATGGATAGAGGGGAATGAGAC 60.322 50.000 0.00 0.00 0.00 3.36
539 540 3.706389 TGGATAGAGGGGAATGAGACA 57.294 47.619 0.00 0.00 0.00 3.41
540 541 4.007581 TGGATAGAGGGGAATGAGACAA 57.992 45.455 0.00 0.00 0.00 3.18
563 564 2.529643 TGAGGGGCGGTGGGTTAA 60.530 61.111 0.00 0.00 0.00 2.01
566 567 0.963856 GAGGGGCGGTGGGTTAAAAG 60.964 60.000 0.00 0.00 0.00 2.27
567 568 1.075305 GGGGCGGTGGGTTAAAAGA 59.925 57.895 0.00 0.00 0.00 2.52
568 569 0.540133 GGGGCGGTGGGTTAAAAGAA 60.540 55.000 0.00 0.00 0.00 2.52
569 570 1.330234 GGGCGGTGGGTTAAAAGAAA 58.670 50.000 0.00 0.00 0.00 2.52
571 572 2.232399 GGCGGTGGGTTAAAAGAAAGA 58.768 47.619 0.00 0.00 0.00 2.52
572 573 2.030540 GGCGGTGGGTTAAAAGAAAGAC 60.031 50.000 0.00 0.00 0.00 3.01
573 574 2.030540 GCGGTGGGTTAAAAGAAAGACC 60.031 50.000 0.00 0.00 0.00 3.85
579 580 3.364664 GGGTTAAAAGAAAGACCTTCGCG 60.365 47.826 0.00 0.00 39.22 5.87
584 585 1.499049 AGAAAGACCTTCGCGTTGTC 58.501 50.000 5.77 11.45 39.22 3.18
622 623 2.355363 CAAGGAACGTGACGCGGA 60.355 61.111 12.47 0.00 46.52 5.54
632 633 0.876342 GTGACGCGGATCCAAGATCC 60.876 60.000 12.47 12.74 34.90 3.36
640 641 0.103208 GATCCAAGATCCGTGCTCGT 59.897 55.000 7.47 0.00 35.01 4.18
644 645 0.926155 CAAGATCCGTGCTCGTCATG 59.074 55.000 7.47 0.00 35.01 3.07
656 657 2.900273 GTCATGGGACGGCTAGCA 59.100 61.111 18.24 0.00 33.68 3.49
664 665 1.348594 GACGGCTAGCAACGCATTC 59.651 57.895 18.24 2.14 0.00 2.67
679 680 3.417275 ATTCGCGCGAGGAGGTCAG 62.417 63.158 32.74 0.00 0.00 3.51
1220 1228 6.570058 GTCATCGTGATTATTTATTGTCGTGC 59.430 38.462 0.00 0.00 0.00 5.34
1221 1229 5.398176 TCGTGATTATTTATTGTCGTGCC 57.602 39.130 0.00 0.00 0.00 5.01
1226 1234 1.732941 ATTTATTGTCGTGCCTGCGA 58.267 45.000 0.00 0.00 38.68 5.10
1397 1405 1.673009 GCCGACGGTCCCAATCAAA 60.673 57.895 16.73 0.00 0.00 2.69
1425 1433 3.260740 CAGTCTTGGTGAGAATCTCTGC 58.739 50.000 11.92 4.54 35.79 4.26
1537 1545 1.630126 AAGCGGATGAGCCCATGACT 61.630 55.000 0.00 0.00 38.01 3.41
1600 1608 2.045340 CCGTCCATGGTGGGTTCC 60.045 66.667 12.58 0.00 38.32 3.62
1852 1875 9.653287 CTGGAAGTTTTCACTCACATACTATTA 57.347 33.333 0.00 0.00 30.45 0.98
2110 2142 6.930731 AGGCAAACTTTGTTTCTTAAGACAA 58.069 32.000 4.18 5.16 34.22 3.18
2304 2337 3.181468 TGCTCAATGTGCTATCTCAGGAG 60.181 47.826 8.78 0.00 0.00 3.69
2336 2369 6.827586 AATTCCGAAATAGCAAGGTTAACA 57.172 33.333 8.10 0.00 0.00 2.41
2383 2416 2.614481 GGGCTGTTTCGGTCTCAACATA 60.614 50.000 0.00 0.00 32.50 2.29
2395 2440 3.068307 GTCTCAACATATACGTGCTCCCT 59.932 47.826 0.00 0.00 0.00 4.20
2519 2564 3.005472 CGTAATAAAGCATCTCCGAGGGA 59.995 47.826 0.00 0.00 0.00 4.20
2838 2883 8.978472 AGATGAAATGGAATGTTCAAAGATGAT 58.022 29.630 0.00 0.00 37.31 2.45
2863 2908 4.671880 TCTTATATTTGCGCAAACACGT 57.328 36.364 35.76 22.82 32.51 4.49
2865 2910 6.166911 TCTTATATTTGCGCAAACACGTAA 57.833 33.333 35.76 26.08 35.83 3.18
2866 2911 6.016718 TCTTATATTTGCGCAAACACGTAAC 58.983 36.000 35.76 0.00 37.37 2.50
2867 2912 1.761206 ATTTGCGCAAACACGTAACC 58.239 45.000 35.76 0.00 37.37 2.85
2872 2917 2.353889 TGCGCAAACACGTAACCTTTTA 59.646 40.909 8.16 0.00 34.88 1.52
2900 2946 5.697082 ATGCCCATTGGTAAATTCATGTT 57.303 34.783 1.20 0.00 0.00 2.71
2917 2963 3.414549 TGTTCGCTTGTTCTTTGGTTC 57.585 42.857 0.00 0.00 0.00 3.62
2920 2968 2.650322 TCGCTTGTTCTTTGGTTCCTT 58.350 42.857 0.00 0.00 0.00 3.36
2941 2989 7.685481 TCCTTCTAAAACCATGTATGTGAGAA 58.315 34.615 0.00 0.00 0.00 2.87
2961 3397 7.800380 GTGAGAATATGGCATACGAAAATTGAG 59.200 37.037 9.83 0.00 0.00 3.02
2969 3405 6.917477 TGGCATACGAAAATTGAGATAATTGC 59.083 34.615 0.00 0.00 0.00 3.56
3000 4308 7.231317 TGGATGAAATATTAACCATTCCTCAGC 59.769 37.037 0.00 0.00 0.00 4.26
3006 4314 8.773033 AATATTAACCATTCCTCAGCAAGAAT 57.227 30.769 0.00 0.00 32.95 2.40
3088 4396 7.864108 AGTGCATATAGTCTTTTGTGCATAA 57.136 32.000 9.19 0.00 43.43 1.90
3115 4423 2.577772 AATCCTAGGCCCTCAAGTCT 57.422 50.000 2.96 0.00 0.00 3.24
3137 4445 3.999001 TTCAGCAGCTCACTGAAGTTATG 59.001 43.478 19.94 0.00 46.46 1.90
3138 4446 4.503817 TTCAGCAGCTCACTGAAGTTATGT 60.504 41.667 19.94 0.00 46.46 2.29
3380 4771 9.606631 ACTCATTTTCAGAAGGTATGATACTTC 57.393 33.333 2.24 4.95 42.56 3.01
3556 4947 6.122277 CACATGGTTAGTGTCCCAATATTCT 58.878 40.000 0.00 0.00 33.66 2.40
3618 5009 3.191162 TCAGAATCCCTTGCAAATTCGTG 59.809 43.478 13.88 12.55 35.14 4.35
3656 5047 9.581099 AAAAGCGTATAATGGAAAATAGGTTTG 57.419 29.630 0.00 0.00 0.00 2.93
3880 5271 5.567138 AACATTGCTGTAGTAATCAAGGC 57.433 39.130 0.00 0.00 33.36 4.35
3982 5373 5.744171 TGAAATGAGCCTGTCTGCTTTATA 58.256 37.500 0.00 0.00 42.95 0.98
4004 5395 4.331968 AGTGAAAATTTGTCGCCCTATGA 58.668 39.130 0.00 0.00 0.00 2.15
4191 5583 4.699257 GCATCCTGATGAACAAAGTTCTCT 59.301 41.667 11.23 0.00 41.20 3.10
4202 5594 4.657013 ACAAAGTTCTCTGATTTCCTCCC 58.343 43.478 0.00 0.00 0.00 4.30
4592 5984 5.009210 TGTTTCATTTTGGAGAGGTAAACGG 59.991 40.000 0.00 0.00 0.00 4.44
4816 6208 6.633856 AGGGCTTAAAAATGAGCTACAATTG 58.366 36.000 3.24 3.24 38.89 2.32
5135 6527 9.013490 GCTCAATGTTTTAGTTGTATTATGCTG 57.987 33.333 0.00 0.00 0.00 4.41
5238 6630 9.247861 AGTTTAATGTTCAAATTCTAGGCTGAT 57.752 29.630 0.00 0.00 0.00 2.90
5384 6776 7.604927 AGGTAAATACAAAACTGAATGCGACTA 59.395 33.333 0.00 0.00 0.00 2.59
5474 6866 2.609002 CACTTGAAAGCAAAGGTTTGGC 59.391 45.455 4.67 0.00 38.57 4.52
5489 6881 4.694982 AGGTTTGGCAACTTTTTCTTTGTG 59.305 37.500 0.00 0.00 32.90 3.33
5657 7049 9.231297 TCAACTTTTTAGAAGATACATGGAAGG 57.769 33.333 0.00 0.00 0.00 3.46
5723 7115 3.498397 TGTCGGCTCTTTCACTGAAAATC 59.502 43.478 5.72 0.00 30.84 2.17
5738 7130 7.820386 TCACTGAAAATCCCAATTGATGATTTG 59.180 33.333 24.35 18.11 38.39 2.32
5741 7133 7.451732 TGAAAATCCCAATTGATGATTTGTGT 58.548 30.769 24.35 15.40 38.39 3.72
5761 7153 8.621921 TTGTGTGTACAAACATTTATTGACAC 57.378 30.769 19.49 8.35 43.47 3.67
5772 7164 7.232945 ACATTTATTGACACAAGTTTGTTGC 57.767 32.000 0.00 0.00 39.91 4.17
5843 7235 6.642131 TCTGCTTTGTGAATTTGATTAAGCAC 59.358 34.615 0.00 0.00 40.86 4.40
5973 7366 5.016831 ACTGGTTGTTTCTTTTGGTTCTCT 58.983 37.500 0.00 0.00 0.00 3.10
5974 7367 6.184789 ACTGGTTGTTTCTTTTGGTTCTCTA 58.815 36.000 0.00 0.00 0.00 2.43
6360 7759 2.508526 CTTTTGCTTCAGGTGGTAGCT 58.491 47.619 0.00 0.00 35.93 3.32
6403 7802 3.861276 TCAGAGCATTGGCATTTTCAG 57.139 42.857 0.00 0.00 44.61 3.02
6513 7916 5.757850 AAACATGTCTTCAACTTCACTCC 57.242 39.130 0.00 0.00 0.00 3.85
6741 8148 0.249398 ATTCAAGAACCGAGTCCCCG 59.751 55.000 0.00 0.00 0.00 5.73
6828 8235 0.395312 ATTACAGGGAATACGGGGCG 59.605 55.000 0.00 0.00 0.00 6.13
7010 8417 5.696724 TCATTTTCTCCTCGAAGACTTGTTC 59.303 40.000 0.00 0.00 32.21 3.18
7017 8424 0.111089 CGAAGACTTGTTCGCTGCAC 60.111 55.000 0.00 0.00 42.57 4.57
7251 9986 2.159382 GGAAAGACCAAAGATGCCGAA 58.841 47.619 0.00 0.00 38.79 4.30
7281 10016 5.066593 GGAAAGAAGAAAAGAAGCTCTCCA 58.933 41.667 0.00 0.00 0.00 3.86
7288 10023 2.869101 AAGAAGCTCTCCACCCTTTC 57.131 50.000 0.00 0.00 0.00 2.62
7398 10139 9.939802 TTTCTTCAAAGAGTAAATAGTACTCCC 57.060 33.333 0.00 0.00 43.61 4.30
7399 10140 8.896722 TCTTCAAAGAGTAAATAGTACTCCCT 57.103 34.615 0.00 0.00 43.61 4.20
7400 10141 8.968969 TCTTCAAAGAGTAAATAGTACTCCCTC 58.031 37.037 0.00 0.00 43.61 4.30
7401 10142 7.657023 TCAAAGAGTAAATAGTACTCCCTCC 57.343 40.000 0.00 0.00 43.61 4.30
7402 10143 6.320672 TCAAAGAGTAAATAGTACTCCCTCCG 59.679 42.308 0.00 0.00 43.61 4.63
7403 10144 5.385628 AGAGTAAATAGTACTCCCTCCGT 57.614 43.478 0.00 0.00 43.61 4.69
7404 10145 5.764432 AGAGTAAATAGTACTCCCTCCGTT 58.236 41.667 0.00 0.00 43.61 4.44
7405 10146 5.827267 AGAGTAAATAGTACTCCCTCCGTTC 59.173 44.000 0.00 0.00 43.61 3.95
7406 10147 4.892345 AGTAAATAGTACTCCCTCCGTTCC 59.108 45.833 0.00 0.00 0.00 3.62
7407 10148 3.684408 AATAGTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
7408 10149 4.803329 AATAGTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
7409 10150 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
7410 10151 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
7411 10152 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
7412 10153 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
7413 10154 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
7414 10155 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
7415 10156 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
7416 10157 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
7417 10158 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
7418 10159 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
7419 10160 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
7420 10161 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
7421 10162 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
7422 10163 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
7423 10164 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
7426 10167 8.762426 CCGTTCCTAAATATAAGTCTTTGTAGC 58.238 37.037 0.00 0.00 0.00 3.58
7427 10168 9.309516 CGTTCCTAAATATAAGTCTTTGTAGCA 57.690 33.333 0.00 0.00 0.00 3.49
7435 10176 9.686683 AATATAAGTCTTTGTAGCAATTCCACT 57.313 29.630 0.00 0.00 0.00 4.00
7439 10180 8.723942 AAGTCTTTGTAGCAATTCCACTATAG 57.276 34.615 0.00 0.00 0.00 1.31
7440 10181 8.079211 AGTCTTTGTAGCAATTCCACTATAGA 57.921 34.615 6.78 0.00 0.00 1.98
7441 10182 7.982354 AGTCTTTGTAGCAATTCCACTATAGAC 59.018 37.037 6.78 0.00 31.41 2.59
7442 10183 7.224949 GTCTTTGTAGCAATTCCACTATAGACC 59.775 40.741 6.78 0.00 0.00 3.85
7443 10184 6.553953 TTGTAGCAATTCCACTATAGACCA 57.446 37.500 6.78 0.00 0.00 4.02
7444 10185 5.914033 TGTAGCAATTCCACTATAGACCAC 58.086 41.667 6.78 0.00 0.00 4.16
7445 10186 5.423931 TGTAGCAATTCCACTATAGACCACA 59.576 40.000 6.78 0.00 0.00 4.17
7446 10187 5.636903 AGCAATTCCACTATAGACCACAT 57.363 39.130 6.78 0.00 0.00 3.21
7447 10188 6.747414 AGCAATTCCACTATAGACCACATA 57.253 37.500 6.78 0.00 0.00 2.29
7448 10189 6.525629 AGCAATTCCACTATAGACCACATAC 58.474 40.000 6.78 0.00 0.00 2.39
7449 10190 5.405571 GCAATTCCACTATAGACCACATACG 59.594 44.000 6.78 0.00 0.00 3.06
7450 10191 5.723672 ATTCCACTATAGACCACATACGG 57.276 43.478 6.78 0.00 0.00 4.02
7451 10192 4.442401 TCCACTATAGACCACATACGGA 57.558 45.455 6.78 0.00 0.00 4.69
7452 10193 4.994282 TCCACTATAGACCACATACGGAT 58.006 43.478 6.78 0.00 0.00 4.18
7453 10194 4.765339 TCCACTATAGACCACATACGGATG 59.235 45.833 5.94 5.94 39.16 3.51
7455 10196 5.708697 CCACTATAGACCACATACGGATGTA 59.291 44.000 14.23 0.00 44.82 2.29
7456 10197 6.377429 CCACTATAGACCACATACGGATGTAT 59.623 42.308 14.23 4.48 44.82 2.29
7457 10198 7.555195 CCACTATAGACCACATACGGATGTATA 59.445 40.741 14.23 6.48 44.82 1.47
7458 10199 9.121658 CACTATAGACCACATACGGATGTATAT 57.878 37.037 14.23 11.61 44.82 0.86
7463 10204 8.226819 AGACCACATACGGATGTATATAGATG 57.773 38.462 14.23 0.00 44.82 2.90
7464 10205 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
7465 10206 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
7466 10207 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
7467 10208 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
7468 10209 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
7469 10210 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
7473 10214 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
7474 10215 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
7485 10226 9.624373 AGATGCATTTTAGAGTGTAGATTCATT 57.376 29.630 0.00 0.00 0.00 2.57
7486 10227 9.875675 GATGCATTTTAGAGTGTAGATTCATTC 57.124 33.333 0.00 0.00 0.00 2.67
7487 10228 8.791327 TGCATTTTAGAGTGTAGATTCATTCA 57.209 30.769 0.00 0.00 0.00 2.57
7488 10229 9.399797 TGCATTTTAGAGTGTAGATTCATTCAT 57.600 29.630 0.00 0.00 0.00 2.57
7496 10237 8.734386 AGAGTGTAGATTCATTCATTTTGTTCC 58.266 33.333 0.00 0.00 0.00 3.62
7497 10238 7.530010 AGTGTAGATTCATTCATTTTGTTCCG 58.470 34.615 0.00 0.00 0.00 4.30
7498 10239 7.174946 AGTGTAGATTCATTCATTTTGTTCCGT 59.825 33.333 0.00 0.00 0.00 4.69
7499 10240 8.447833 GTGTAGATTCATTCATTTTGTTCCGTA 58.552 33.333 0.00 0.00 0.00 4.02
7500 10241 9.173021 TGTAGATTCATTCATTTTGTTCCGTAT 57.827 29.630 0.00 0.00 0.00 3.06
7501 10242 9.438291 GTAGATTCATTCATTTTGTTCCGTATG 57.562 33.333 0.00 0.00 0.00 2.39
7502 10243 8.055279 AGATTCATTCATTTTGTTCCGTATGT 57.945 30.769 0.00 0.00 0.00 2.29
7503 10244 9.173021 AGATTCATTCATTTTGTTCCGTATGTA 57.827 29.630 0.00 0.00 0.00 2.29
7504 10245 9.438291 GATTCATTCATTTTGTTCCGTATGTAG 57.562 33.333 0.00 0.00 0.00 2.74
7505 10246 7.915293 TCATTCATTTTGTTCCGTATGTAGT 57.085 32.000 0.00 0.00 0.00 2.73
7506 10247 8.330466 TCATTCATTTTGTTCCGTATGTAGTT 57.670 30.769 0.00 0.00 0.00 2.24
7507 10248 8.788806 TCATTCATTTTGTTCCGTATGTAGTTT 58.211 29.630 0.00 0.00 0.00 2.66
7514 10255 9.926158 TTTTGTTCCGTATGTAGTTTATAGTGA 57.074 29.630 0.00 0.00 0.00 3.41
7515 10256 9.926158 TTTGTTCCGTATGTAGTTTATAGTGAA 57.074 29.630 0.00 0.00 0.00 3.18
7516 10257 9.926158 TTGTTCCGTATGTAGTTTATAGTGAAA 57.074 29.630 0.00 0.00 0.00 2.69
7662 10404 4.731773 GCACTGGTAGCTTTATTCATGCAC 60.732 45.833 0.00 0.00 0.00 4.57
7718 10475 5.221581 ACCCTACTACCTTTGGCAATATACG 60.222 44.000 0.00 0.00 0.00 3.06
7725 10482 1.021202 TTGGCAATATACGCAGGCAC 58.979 50.000 0.00 0.00 36.22 5.01
7748 10505 7.466996 GCACGAGTACATACATCTAGTTACTGT 60.467 40.741 0.00 0.00 0.00 3.55
7749 10506 8.396390 CACGAGTACATACATCTAGTTACTGTT 58.604 37.037 0.00 0.00 0.00 3.16
7787 10544 3.990318 AGTTACTGTTTGCTTTGCTCC 57.010 42.857 0.00 0.00 0.00 4.70
7816 10573 4.906423 AGCGTGAATTGTACTCTACTACG 58.094 43.478 0.00 0.00 0.00 3.51
7817 10574 4.394300 AGCGTGAATTGTACTCTACTACGT 59.606 41.667 0.00 0.00 0.00 3.57
7818 10575 5.582269 AGCGTGAATTGTACTCTACTACGTA 59.418 40.000 0.00 0.00 0.00 3.57
7819 10576 5.674580 GCGTGAATTGTACTCTACTACGTAC 59.325 44.000 0.00 0.00 37.19 3.67
7869 10626 7.941795 AGTGTACTACAACTTCAATACACAC 57.058 36.000 13.17 0.00 43.03 3.82
7884 10641 5.748670 ATACACACCCACATAACAGTACA 57.251 39.130 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.361357 CTCCTCCGTCACCCTCGT 60.361 66.667 0.00 0.00 0.00 4.18
6 7 2.045242 TCTCCTCCGTCACCCTCG 60.045 66.667 0.00 0.00 0.00 4.63
10 11 1.592223 CAACCTCTCCTCCGTCACC 59.408 63.158 0.00 0.00 0.00 4.02
14 15 0.252284 ATCACCAACCTCTCCTCCGT 60.252 55.000 0.00 0.00 0.00 4.69
25 26 2.112815 GCGGCTACCCATCACCAAC 61.113 63.158 0.00 0.00 0.00 3.77
33 34 3.712907 GGTGGAAGCGGCTACCCA 61.713 66.667 16.93 16.93 33.69 4.51
37 38 1.220749 GTCATGGTGGAAGCGGCTA 59.779 57.895 1.35 0.00 36.92 3.93
48 49 3.640407 AGCGCCCACAGTCATGGT 61.640 61.111 2.29 0.00 38.16 3.55
52 53 4.994471 CTGCAGCGCCCACAGTCA 62.994 66.667 2.29 0.00 0.00 3.41
68 69 3.923563 GAGGCGACGAGTTGCTGCT 62.924 63.158 14.35 4.91 39.87 4.24
69 70 3.482783 GAGGCGACGAGTTGCTGC 61.483 66.667 14.35 0.00 39.87 5.25
96 97 2.358125 TGATGGTTGCCGTCACCG 60.358 61.111 6.01 0.00 43.70 4.94
104 105 2.679996 GGGGTGGGTGATGGTTGC 60.680 66.667 0.00 0.00 0.00 4.17
119 120 0.611896 GGGAGACAAATGTGGGTGGG 60.612 60.000 0.00 0.00 0.00 4.61
128 129 1.827969 CCGAGAGAGTGGGAGACAAAT 59.172 52.381 0.00 0.00 0.00 2.32
137 138 2.202676 GCTTCGCCGAGAGAGTGG 60.203 66.667 0.00 0.00 0.00 4.00
139 140 2.569134 GTGCTTCGCCGAGAGAGT 59.431 61.111 0.00 0.00 0.00 3.24
148 149 2.109126 GGGTCATCTGGTGCTTCGC 61.109 63.158 0.00 0.00 0.00 4.70
161 162 4.974438 AGGGGTCGCAAGGGGTCA 62.974 66.667 0.00 0.00 38.47 4.02
167 168 2.124570 CATGGGAGGGGTCGCAAG 60.125 66.667 0.00 0.00 36.18 4.01
168 169 1.570857 ATTCATGGGAGGGGTCGCAA 61.571 55.000 0.00 0.00 36.18 4.85
169 170 2.000701 ATTCATGGGAGGGGTCGCA 61.001 57.895 0.00 0.00 36.99 5.10
170 171 1.526917 CATTCATGGGAGGGGTCGC 60.527 63.158 0.00 0.00 0.00 5.19
171 172 1.149174 CCATTCATGGGAGGGGTCG 59.851 63.158 0.00 0.00 44.31 4.79
183 184 0.607217 CTCAGCTGTGTGCCCATTCA 60.607 55.000 14.67 0.00 44.23 2.57
185 186 1.303888 CCTCAGCTGTGTGCCCATT 60.304 57.895 14.67 0.00 44.23 3.16
206 207 3.799755 GGCCAACATGTCGGTCGC 61.800 66.667 4.39 0.00 0.00 5.19
209 210 1.600636 CACAGGCCAACATGTCGGT 60.601 57.895 5.01 0.00 0.00 4.69
214 215 1.324740 CCCCATCACAGGCCAACATG 61.325 60.000 5.01 0.87 0.00 3.21
215 216 1.000739 CCCCATCACAGGCCAACAT 59.999 57.895 5.01 0.00 0.00 2.71
216 217 2.440147 CCCCATCACAGGCCAACA 59.560 61.111 5.01 0.00 0.00 3.33
224 225 2.033448 GTTGACCGCCCCATCACA 59.967 61.111 0.00 0.00 0.00 3.58
241 242 1.589993 CTGCGGGCTACAGTGATCG 60.590 63.158 0.00 0.00 0.00 3.69
267 268 3.875510 AACAAGCTGGGCCTGGAGC 62.876 63.158 12.70 9.43 42.60 4.70
269 270 2.436109 GAACAAGCTGGGCCTGGA 59.564 61.111 12.70 0.00 0.00 3.86
270 271 2.677875 GGAACAAGCTGGGCCTGG 60.678 66.667 12.70 2.60 0.00 4.45
271 272 2.677875 GGGAACAAGCTGGGCCTG 60.678 66.667 4.53 5.32 0.00 4.85
281 282 3.961414 GGAGGCACGGGGGAACAA 61.961 66.667 0.00 0.00 0.00 2.83
303 304 1.995626 CTCCCCTCACCCCAATCGT 60.996 63.158 0.00 0.00 0.00 3.73
307 308 2.124996 CTCCTCCCCTCACCCCAA 59.875 66.667 0.00 0.00 0.00 4.12
308 309 4.024984 CCTCCTCCCCTCACCCCA 62.025 72.222 0.00 0.00 0.00 4.96
313 314 2.285668 CAAGGCCTCCTCCCCTCA 60.286 66.667 5.23 0.00 30.89 3.86
327 328 2.094659 CCTACTCGCGTGTGGCAAG 61.095 63.158 22.97 12.23 43.84 4.01
329 330 2.986979 TCCTACTCGCGTGTGGCA 60.987 61.111 22.97 3.88 43.84 4.92
354 355 2.357517 AAGCAGCGAAGGGTGACG 60.358 61.111 0.00 0.00 44.37 4.35
356 357 2.048222 CGAAGCAGCGAAGGGTGA 60.048 61.111 0.00 0.00 44.37 4.02
385 386 3.304928 GCTTTGGTTGGTCTGTTCAGATG 60.305 47.826 5.80 0.00 0.00 2.90
409 410 3.640967 CCTCATCAGAGAACTAGAAGGGG 59.359 52.174 0.00 0.00 44.98 4.79
426 427 3.148279 GCGACGGGAGGACCTCAT 61.148 66.667 23.06 7.82 36.97 2.90
437 438 4.838152 CAGGGGATGTGGCGACGG 62.838 72.222 0.00 0.00 0.00 4.79
441 442 2.440796 AATGCAGGGGATGTGGCG 60.441 61.111 0.00 0.00 0.00 5.69
480 481 3.118702 CTCTGGAGAAGATGACAGCATGT 60.119 47.826 0.00 0.00 44.18 3.21
481 482 3.459145 CTCTGGAGAAGATGACAGCATG 58.541 50.000 0.00 0.00 36.69 4.06
482 483 2.435069 CCTCTGGAGAAGATGACAGCAT 59.565 50.000 0.00 0.00 37.47 3.79
483 484 1.829849 CCTCTGGAGAAGATGACAGCA 59.170 52.381 0.00 0.00 33.29 4.41
484 485 1.830477 ACCTCTGGAGAAGATGACAGC 59.170 52.381 0.00 0.00 33.29 4.40
485 486 3.364549 AGACCTCTGGAGAAGATGACAG 58.635 50.000 0.00 0.00 33.29 3.51
486 487 3.011144 AGAGACCTCTGGAGAAGATGACA 59.989 47.826 0.00 0.00 38.75 3.58
487 488 3.631250 AGAGACCTCTGGAGAAGATGAC 58.369 50.000 0.00 0.00 38.75 3.06
488 489 3.684130 CGAGAGACCTCTGGAGAAGATGA 60.684 52.174 3.99 0.00 40.61 2.92
489 490 2.618241 CGAGAGACCTCTGGAGAAGATG 59.382 54.545 3.99 0.00 40.61 2.90
490 491 2.930950 CGAGAGACCTCTGGAGAAGAT 58.069 52.381 3.99 0.00 40.61 2.40
491 492 1.680555 GCGAGAGACCTCTGGAGAAGA 60.681 57.143 12.30 0.00 40.61 2.87
492 493 0.738389 GCGAGAGACCTCTGGAGAAG 59.262 60.000 12.30 0.00 40.61 2.85
493 494 0.329931 AGCGAGAGACCTCTGGAGAA 59.670 55.000 12.30 0.00 40.61 2.87
494 495 0.107410 GAGCGAGAGACCTCTGGAGA 60.107 60.000 12.30 0.00 40.61 3.71
495 496 1.436195 CGAGCGAGAGACCTCTGGAG 61.436 65.000 12.30 2.31 40.61 3.86
496 497 1.450491 CGAGCGAGAGACCTCTGGA 60.450 63.158 12.30 0.00 40.61 3.86
497 498 3.106552 CGAGCGAGAGACCTCTGG 58.893 66.667 3.99 4.50 40.61 3.86
498 499 2.407210 GCGAGCGAGAGACCTCTG 59.593 66.667 3.99 0.00 40.61 3.35
499 500 3.199190 CGCGAGCGAGAGACCTCT 61.199 66.667 12.58 0.00 43.78 3.69
500 501 3.196394 TCGCGAGCGAGAGACCTC 61.196 66.667 16.64 0.00 44.01 3.85
509 510 0.730834 CCTCTATCCATTCGCGAGCG 60.731 60.000 9.59 11.64 41.35 5.03
510 511 0.389166 CCCTCTATCCATTCGCGAGC 60.389 60.000 9.59 0.00 0.00 5.03
511 512 0.244994 CCCCTCTATCCATTCGCGAG 59.755 60.000 9.59 0.00 0.00 5.03
512 513 0.178973 TCCCCTCTATCCATTCGCGA 60.179 55.000 3.71 3.71 0.00 5.87
513 514 0.679505 TTCCCCTCTATCCATTCGCG 59.320 55.000 0.00 0.00 0.00 5.87
514 515 2.303022 TCATTCCCCTCTATCCATTCGC 59.697 50.000 0.00 0.00 0.00 4.70
515 516 3.834813 TCTCATTCCCCTCTATCCATTCG 59.165 47.826 0.00 0.00 0.00 3.34
516 517 4.594920 TGTCTCATTCCCCTCTATCCATTC 59.405 45.833 0.00 0.00 0.00 2.67
517 518 4.570926 TGTCTCATTCCCCTCTATCCATT 58.429 43.478 0.00 0.00 0.00 3.16
518 519 4.219392 TGTCTCATTCCCCTCTATCCAT 57.781 45.455 0.00 0.00 0.00 3.41
519 520 3.706389 TGTCTCATTCCCCTCTATCCA 57.294 47.619 0.00 0.00 0.00 3.41
520 521 3.970640 ACTTGTCTCATTCCCCTCTATCC 59.029 47.826 0.00 0.00 0.00 2.59
521 522 4.202305 CCACTTGTCTCATTCCCCTCTATC 60.202 50.000 0.00 0.00 0.00 2.08
522 523 3.713764 CCACTTGTCTCATTCCCCTCTAT 59.286 47.826 0.00 0.00 0.00 1.98
523 524 3.107601 CCACTTGTCTCATTCCCCTCTA 58.892 50.000 0.00 0.00 0.00 2.43
524 525 1.912043 CCACTTGTCTCATTCCCCTCT 59.088 52.381 0.00 0.00 0.00 3.69
525 526 1.065126 CCCACTTGTCTCATTCCCCTC 60.065 57.143 0.00 0.00 0.00 4.30
526 527 0.995024 CCCACTTGTCTCATTCCCCT 59.005 55.000 0.00 0.00 0.00 4.79
527 528 0.698818 ACCCACTTGTCTCATTCCCC 59.301 55.000 0.00 0.00 0.00 4.81
528 529 1.351017 TCACCCACTTGTCTCATTCCC 59.649 52.381 0.00 0.00 0.00 3.97
529 530 2.616510 CCTCACCCACTTGTCTCATTCC 60.617 54.545 0.00 0.00 0.00 3.01
530 531 2.616510 CCCTCACCCACTTGTCTCATTC 60.617 54.545 0.00 0.00 0.00 2.67
531 532 1.352352 CCCTCACCCACTTGTCTCATT 59.648 52.381 0.00 0.00 0.00 2.57
532 533 0.987294 CCCTCACCCACTTGTCTCAT 59.013 55.000 0.00 0.00 0.00 2.90
533 534 1.127567 CCCCTCACCCACTTGTCTCA 61.128 60.000 0.00 0.00 0.00 3.27
534 535 1.679898 CCCCTCACCCACTTGTCTC 59.320 63.158 0.00 0.00 0.00 3.36
535 536 2.529744 GCCCCTCACCCACTTGTCT 61.530 63.158 0.00 0.00 0.00 3.41
536 537 2.034221 GCCCCTCACCCACTTGTC 59.966 66.667 0.00 0.00 0.00 3.18
537 538 3.953775 CGCCCCTCACCCACTTGT 61.954 66.667 0.00 0.00 0.00 3.16
538 539 4.722700 CCGCCCCTCACCCACTTG 62.723 72.222 0.00 0.00 0.00 3.16
561 562 3.872771 ACAACGCGAAGGTCTTTCTTTTA 59.127 39.130 15.93 0.00 33.44 1.52
563 564 2.285977 ACAACGCGAAGGTCTTTCTTT 58.714 42.857 15.93 0.00 33.44 2.52
566 567 0.511653 GGACAACGCGAAGGTCTTTC 59.488 55.000 15.93 1.08 0.00 2.62
567 568 1.219522 CGGACAACGCGAAGGTCTTT 61.220 55.000 15.93 0.00 34.82 2.52
568 569 1.663702 CGGACAACGCGAAGGTCTT 60.664 57.895 15.93 0.00 34.82 3.01
569 570 2.049433 CGGACAACGCGAAGGTCT 60.049 61.111 15.93 0.00 34.82 3.85
579 580 2.516225 GCCCCCTATGCGGACAAC 60.516 66.667 0.00 0.00 33.16 3.32
622 623 0.103208 GACGAGCACGGATCTTGGAT 59.897 55.000 8.74 0.00 44.46 3.41
640 641 1.220749 GTTGCTAGCCGTCCCATGA 59.779 57.895 13.29 0.00 0.00 3.07
644 645 4.752879 TGCGTTGCTAGCCGTCCC 62.753 66.667 13.29 0.00 0.00 4.46
664 665 3.626680 TTTCTGACCTCCTCGCGCG 62.627 63.158 26.76 26.76 0.00 6.86
679 680 0.042448 AAGCGCGAACGTCAGTTTTC 60.042 50.000 12.10 0.00 41.34 2.29
1226 1234 0.754217 TAGTAGCGATTCCCCTGCGT 60.754 55.000 0.00 0.00 0.00 5.24
1425 1433 1.882623 GGGGTCAAACTCAAAGCAGAG 59.117 52.381 0.00 0.00 41.44 3.35
1600 1608 3.569684 CGTAATCGAACTGCGCAAAACG 61.570 50.000 13.05 16.73 41.74 3.60
2093 2125 9.626045 AGTCAAAACTTGTCTTAAGAAACAAAG 57.374 29.630 6.78 10.95 35.13 2.77
2191 2224 6.106003 TGAACTCGTAATGCACATATGTTCT 58.894 36.000 5.37 0.00 34.31 3.01
2192 2225 6.344572 TGAACTCGTAATGCACATATGTTC 57.655 37.500 5.37 1.31 33.94 3.18
2336 2369 6.259346 TCCTCAATTTCCCCAAACAAATTT 57.741 33.333 0.00 0.00 31.22 1.82
2351 2384 2.529632 GAAACAGCCCCTTCCTCAATT 58.470 47.619 0.00 0.00 0.00 2.32
2383 2416 7.280356 ACAAATTAAGATTAGGGAGCACGTAT 58.720 34.615 0.00 0.00 0.00 3.06
2480 2525 2.249844 ACGGTTCCTGGTTGTGTTAG 57.750 50.000 0.00 0.00 0.00 2.34
2585 2630 8.707938 AGCCATATCAATTGCTTTCTTAAAAC 57.292 30.769 0.00 0.00 30.12 2.43
2694 2739 7.090173 CCTTACGAATCAACCACATGAAAAAT 58.910 34.615 0.00 0.00 32.06 1.82
2741 2786 1.530293 GCGATGCTATTTGCTCTCCTG 59.470 52.381 0.00 0.00 43.37 3.86
2785 2830 5.195001 TGGTGACAAGTAAAGCAAAATCC 57.805 39.130 0.00 0.00 37.44 3.01
2838 2883 7.244898 ACGTGTTTGCGCAAATATAAGATTTA 58.755 30.769 35.53 8.78 34.88 1.40
2853 2898 7.784790 AATAATAAAAGGTTACGTGTTTGCG 57.215 32.000 0.00 0.00 37.94 4.85
2863 2908 9.440761 ACCAATGGGCATAATAATAAAAGGTTA 57.559 29.630 3.55 0.00 37.90 2.85
2865 2910 7.929348 ACCAATGGGCATAATAATAAAAGGT 57.071 32.000 3.55 0.00 37.90 3.50
2872 2917 9.947433 CATGAATTTACCAATGGGCATAATAAT 57.053 29.630 3.55 0.00 37.90 1.28
2900 2946 2.341846 AGGAACCAAAGAACAAGCGA 57.658 45.000 0.00 0.00 0.00 4.93
2917 2963 7.921786 TTCTCACATACATGGTTTTAGAAGG 57.078 36.000 0.00 0.00 0.00 3.46
2920 2968 9.559732 CCATATTCTCACATACATGGTTTTAGA 57.440 33.333 0.00 0.00 0.00 2.10
2931 2979 7.652300 TTTCGTATGCCATATTCTCACATAC 57.348 36.000 0.00 0.00 39.64 2.39
2933 2981 7.750229 ATTTTCGTATGCCATATTCTCACAT 57.250 32.000 0.00 0.00 0.00 3.21
3000 4308 5.122396 GCCTACACCAGAAACTGTATTCTTG 59.878 44.000 0.00 3.69 37.56 3.02
3006 4314 4.202419 ACATTGCCTACACCAGAAACTGTA 60.202 41.667 0.00 0.00 0.00 2.74
3088 4396 2.106684 GAGGGCCTAGGATTTCGGAATT 59.893 50.000 14.75 0.00 0.00 2.17
3115 4423 2.627515 AACTTCAGTGAGCTGCTGAA 57.372 45.000 21.81 21.81 46.78 3.02
3138 4446 8.553153 TACTTAATGGGATGAAAGTATGGAACA 58.447 33.333 0.00 0.00 36.68 3.18
3206 4514 7.285629 ACGAATCACTGAATCTAGTCCTATGAA 59.714 37.037 0.00 0.00 0.00 2.57
3207 4515 6.773200 ACGAATCACTGAATCTAGTCCTATGA 59.227 38.462 0.00 0.00 0.00 2.15
3208 4516 6.976088 ACGAATCACTGAATCTAGTCCTATG 58.024 40.000 0.00 0.00 0.00 2.23
3209 4517 7.589958 AACGAATCACTGAATCTAGTCCTAT 57.410 36.000 0.00 0.00 0.00 2.57
3210 4518 7.339721 AGAAACGAATCACTGAATCTAGTCCTA 59.660 37.037 0.00 0.00 0.00 2.94
3211 4519 5.923733 AACGAATCACTGAATCTAGTCCT 57.076 39.130 0.00 0.00 0.00 3.85
3212 4520 6.334202 AGAAACGAATCACTGAATCTAGTCC 58.666 40.000 0.00 0.00 0.00 3.85
3213 4521 8.912787 TTAGAAACGAATCACTGAATCTAGTC 57.087 34.615 0.00 0.00 0.00 2.59
3214 4522 9.877178 ATTTAGAAACGAATCACTGAATCTAGT 57.123 29.630 0.00 0.00 0.00 2.57
3380 4771 7.929159 ACAAAAACAGGAAGGCAAATTAATTG 58.071 30.769 0.39 0.00 42.21 2.32
3419 4810 9.211485 CCAGATTTATGAAACTGAAGCAAAAAT 57.789 29.630 8.80 0.00 32.90 1.82
3425 4816 8.246180 TGAATTCCAGATTTATGAAACTGAAGC 58.754 33.333 8.80 1.28 32.90 3.86
3492 4883 3.795688 AGGAGAGATGTTTTGCCTTCA 57.204 42.857 0.00 0.00 0.00 3.02
3493 4884 3.823304 ACAAGGAGAGATGTTTTGCCTTC 59.177 43.478 0.00 0.00 33.73 3.46
3497 4888 2.555757 AGCACAAGGAGAGATGTTTTGC 59.444 45.455 0.00 0.00 0.00 3.68
3547 4938 7.172875 TGCAATGTTTTGTGGAAAGAATATTGG 59.827 33.333 0.00 0.00 35.17 3.16
3556 4947 3.736433 CGACCTGCAATGTTTTGTGGAAA 60.736 43.478 0.00 0.00 35.17 3.13
3618 5009 0.249031 ACGCTTTTCTGCTTTGGTGC 60.249 50.000 0.00 0.00 0.00 5.01
3620 5011 5.393027 CCATTATACGCTTTTCTGCTTTGGT 60.393 40.000 0.00 0.00 0.00 3.67
3656 5047 3.878778 ACACAGATAATGCTCAAGACCC 58.121 45.455 0.00 0.00 0.00 4.46
3760 5151 9.627123 TTCAAGTAATAGCAATTATGGCTTACT 57.373 29.630 0.00 0.00 42.62 2.24
3950 5341 5.703130 AGACAGGCTCATTTCAAAGAAGTAC 59.297 40.000 0.00 0.00 0.00 2.73
3982 5373 4.331968 TCATAGGGCGACAAATTTTCACT 58.668 39.130 0.00 0.00 0.00 3.41
4134 5526 4.036380 CCTTCTTGGCTCGTTTAAACAGTT 59.964 41.667 18.07 0.00 0.00 3.16
4191 5583 4.733077 TTTGGTACTTGGGAGGAAATCA 57.267 40.909 0.00 0.00 0.00 2.57
4407 5799 1.263356 TCTACCTCAAGTTGACCCCG 58.737 55.000 0.08 0.00 0.00 5.73
4592 5984 5.615289 ACTCTGCCAGGTGAATTACATATC 58.385 41.667 0.00 0.00 0.00 1.63
4816 6208 5.899299 AGTCATAATTCAAAGCTGCAATCC 58.101 37.500 1.02 0.00 0.00 3.01
4983 6375 9.804977 GGACCACCTACTTAGTTATATAAGAGA 57.195 37.037 0.00 0.00 36.46 3.10
5006 6398 7.122055 TGTTGAGATAAATATGTTTGTGGGGAC 59.878 37.037 0.00 0.00 0.00 4.46
5014 6406 8.004087 AGCTGCATGTTGAGATAAATATGTTT 57.996 30.769 1.02 0.00 32.83 2.83
5238 6630 2.357637 CGAAAAACTGTGGAGCCTTCAA 59.642 45.455 0.00 0.00 0.00 2.69
5419 6811 3.322211 TTGCTGGCTTCATCAAATTGG 57.678 42.857 0.00 0.00 0.00 3.16
5474 6866 9.278734 GTCTAGAAACTCACAAAGAAAAAGTTG 57.721 33.333 0.00 0.00 30.95 3.16
5723 7115 6.023357 TGTACACACAAATCATCAATTGGG 57.977 37.500 5.42 0.00 36.04 4.12
5738 7130 8.621921 TTGTGTCAATAAATGTTTGTACACAC 57.378 30.769 5.17 5.17 40.52 3.82
5741 7133 9.862371 AAACTTGTGTCAATAAATGTTTGTACA 57.138 25.926 0.00 0.00 38.95 2.90
5761 7153 7.584847 CAGCAAATATTCAAAGCAACAAACTTG 59.415 33.333 0.00 0.00 0.00 3.16
5843 7235 1.514657 CACGCATGCGGAAACATGG 60.515 57.895 39.95 16.73 46.14 3.66
5897 7289 2.153645 CAAAAGGCCCTTTTCCATTGC 58.846 47.619 18.54 0.00 41.05 3.56
6154 7549 3.318839 TGGGTTTGATTGCTTTGACAGAG 59.681 43.478 0.00 0.00 0.00 3.35
6346 7745 2.012673 GAATGCAGCTACCACCTGAAG 58.987 52.381 0.00 0.00 32.03 3.02
6394 7793 2.012673 ACGCTCTGGATCTGAAAATGC 58.987 47.619 0.00 0.00 0.00 3.56
6403 7802 2.280628 CCTGGTTTTACGCTCTGGATC 58.719 52.381 0.00 0.00 0.00 3.36
6741 8148 2.657944 CTGAGCTGAGCGGCGATC 60.658 66.667 19.57 19.57 37.29 3.69
6828 8235 2.658593 CATCCGCCGATGTCGTCC 60.659 66.667 6.85 0.00 40.97 4.79
6896 8303 8.223769 GCTAATGATTGTACATCAACTATTCGG 58.776 37.037 0.00 0.00 38.97 4.30
7010 8417 3.052082 CCTTCACAGGGTGCAGCG 61.052 66.667 10.24 0.00 36.36 5.18
7012 8419 1.669115 CGACCTTCACAGGGTGCAG 60.669 63.158 0.00 0.00 46.01 4.41
7017 8424 2.030562 AACGCGACCTTCACAGGG 59.969 61.111 15.93 0.00 46.01 4.45
7251 9986 8.876303 AGCTTCTTTTCTTCTTTCCATTATCT 57.124 30.769 0.00 0.00 0.00 1.98
7355 10096 5.122239 TGAAGAAAAAGAGCACGTATGGATG 59.878 40.000 0.00 0.00 0.00 3.51
7394 10135 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
7397 10138 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
7398 10139 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
7400 10141 8.762426 GCTACAAAGACTTATATTTAGGAACGG 58.238 37.037 0.00 0.00 0.00 4.44
7401 10142 9.309516 TGCTACAAAGACTTATATTTAGGAACG 57.690 33.333 0.00 0.00 0.00 3.95
7409 10150 9.686683 AGTGGAATTGCTACAAAGACTTATATT 57.313 29.630 0.00 0.00 0.00 1.28
7413 10154 9.817809 CTATAGTGGAATTGCTACAAAGACTTA 57.182 33.333 0.00 0.00 0.00 2.24
7414 10155 8.540388 TCTATAGTGGAATTGCTACAAAGACTT 58.460 33.333 0.00 0.00 0.00 3.01
7415 10156 7.982354 GTCTATAGTGGAATTGCTACAAAGACT 59.018 37.037 0.00 0.00 34.01 3.24
7416 10157 7.224949 GGTCTATAGTGGAATTGCTACAAAGAC 59.775 40.741 0.00 6.22 35.01 3.01
7417 10158 7.093068 TGGTCTATAGTGGAATTGCTACAAAGA 60.093 37.037 0.00 0.00 0.00 2.52
7418 10159 7.011482 GTGGTCTATAGTGGAATTGCTACAAAG 59.989 40.741 0.00 0.00 0.00 2.77
7419 10160 6.821665 GTGGTCTATAGTGGAATTGCTACAAA 59.178 38.462 0.00 0.00 0.00 2.83
7420 10161 6.070481 TGTGGTCTATAGTGGAATTGCTACAA 60.070 38.462 0.00 0.00 0.00 2.41
7421 10162 5.423931 TGTGGTCTATAGTGGAATTGCTACA 59.576 40.000 0.00 0.00 0.00 2.74
7422 10163 5.914033 TGTGGTCTATAGTGGAATTGCTAC 58.086 41.667 0.00 0.00 0.00 3.58
7423 10164 6.747414 ATGTGGTCTATAGTGGAATTGCTA 57.253 37.500 0.00 0.00 0.00 3.49
7424 10165 5.636903 ATGTGGTCTATAGTGGAATTGCT 57.363 39.130 0.00 0.00 0.00 3.91
7425 10166 5.405571 CGTATGTGGTCTATAGTGGAATTGC 59.594 44.000 0.00 0.00 0.00 3.56
7426 10167 5.926542 CCGTATGTGGTCTATAGTGGAATTG 59.073 44.000 0.00 0.00 0.00 2.32
7427 10168 5.836898 TCCGTATGTGGTCTATAGTGGAATT 59.163 40.000 0.00 0.00 0.00 2.17
7428 10169 5.391256 TCCGTATGTGGTCTATAGTGGAAT 58.609 41.667 0.00 0.00 0.00 3.01
7429 10170 4.795469 TCCGTATGTGGTCTATAGTGGAA 58.205 43.478 0.00 0.00 0.00 3.53
7430 10171 4.442401 TCCGTATGTGGTCTATAGTGGA 57.558 45.455 0.00 0.00 0.00 4.02
7431 10172 4.523173 ACATCCGTATGTGGTCTATAGTGG 59.477 45.833 0.00 0.00 44.79 4.00
7432 10173 5.707242 ACATCCGTATGTGGTCTATAGTG 57.293 43.478 0.00 0.00 44.79 2.74
7437 10178 9.338622 CATCTATATACATCCGTATGTGGTCTA 57.661 37.037 3.56 0.00 45.99 2.59
7438 10179 7.201830 GCATCTATATACATCCGTATGTGGTCT 60.202 40.741 3.56 0.00 45.99 3.85
7439 10180 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
7440 10181 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
7441 10182 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
7442 10183 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
7447 10188 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
7448 10189 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
7459 10200 9.624373 AATGAATCTACACTCTAAAATGCATCT 57.376 29.630 0.00 0.00 0.00 2.90
7460 10201 9.875675 GAATGAATCTACACTCTAAAATGCATC 57.124 33.333 0.00 0.00 0.00 3.91
7461 10202 9.399797 TGAATGAATCTACACTCTAAAATGCAT 57.600 29.630 0.00 0.00 0.00 3.96
7462 10203 8.791327 TGAATGAATCTACACTCTAAAATGCA 57.209 30.769 0.00 0.00 0.00 3.96
7470 10211 8.734386 GGAACAAAATGAATGAATCTACACTCT 58.266 33.333 0.00 0.00 0.00 3.24
7471 10212 7.693951 CGGAACAAAATGAATGAATCTACACTC 59.306 37.037 0.00 0.00 0.00 3.51
7472 10213 7.174946 ACGGAACAAAATGAATGAATCTACACT 59.825 33.333 0.00 0.00 0.00 3.55
7473 10214 7.305474 ACGGAACAAAATGAATGAATCTACAC 58.695 34.615 0.00 0.00 0.00 2.90
7474 10215 7.447374 ACGGAACAAAATGAATGAATCTACA 57.553 32.000 0.00 0.00 0.00 2.74
7475 10216 9.438291 CATACGGAACAAAATGAATGAATCTAC 57.562 33.333 0.00 0.00 0.00 2.59
7476 10217 9.173021 ACATACGGAACAAAATGAATGAATCTA 57.827 29.630 0.00 0.00 0.00 1.98
7477 10218 8.055279 ACATACGGAACAAAATGAATGAATCT 57.945 30.769 0.00 0.00 0.00 2.40
7478 10219 9.438291 CTACATACGGAACAAAATGAATGAATC 57.562 33.333 0.00 0.00 0.00 2.52
7479 10220 8.956426 ACTACATACGGAACAAAATGAATGAAT 58.044 29.630 0.00 0.00 0.00 2.57
7480 10221 8.330466 ACTACATACGGAACAAAATGAATGAA 57.670 30.769 0.00 0.00 0.00 2.57
7481 10222 7.915293 ACTACATACGGAACAAAATGAATGA 57.085 32.000 0.00 0.00 0.00 2.57
7482 10223 8.964420 AAACTACATACGGAACAAAATGAATG 57.036 30.769 0.00 0.00 0.00 2.67
7488 10229 9.926158 TCACTATAAACTACATACGGAACAAAA 57.074 29.630 0.00 0.00 0.00 2.44
7489 10230 9.926158 TTCACTATAAACTACATACGGAACAAA 57.074 29.630 0.00 0.00 0.00 2.83
7490 10231 9.926158 TTTCACTATAAACTACATACGGAACAA 57.074 29.630 0.00 0.00 0.00 2.83
7529 10270 9.257651 CGTACTCCCTTTGTTCCTAAATATAAG 57.742 37.037 0.00 0.00 0.00 1.73
7530 10271 8.761689 ACGTACTCCCTTTGTTCCTAAATATAA 58.238 33.333 0.00 0.00 0.00 0.98
7531 10272 8.310122 ACGTACTCCCTTTGTTCCTAAATATA 57.690 34.615 0.00 0.00 0.00 0.86
7532 10273 7.191593 ACGTACTCCCTTTGTTCCTAAATAT 57.808 36.000 0.00 0.00 0.00 1.28
7533 10274 6.610075 ACGTACTCCCTTTGTTCCTAAATA 57.390 37.500 0.00 0.00 0.00 1.40
7534 10275 5.494390 ACGTACTCCCTTTGTTCCTAAAT 57.506 39.130 0.00 0.00 0.00 1.40
7535 10276 4.961438 ACGTACTCCCTTTGTTCCTAAA 57.039 40.909 0.00 0.00 0.00 1.85
7536 10277 4.082787 CGTACGTACTCCCTTTGTTCCTAA 60.083 45.833 22.55 0.00 0.00 2.69
7537 10278 3.440173 CGTACGTACTCCCTTTGTTCCTA 59.560 47.826 22.55 0.00 0.00 2.94
7538 10279 2.229784 CGTACGTACTCCCTTTGTTCCT 59.770 50.000 22.55 0.00 0.00 3.36
7539 10280 2.029918 ACGTACGTACTCCCTTTGTTCC 60.030 50.000 21.41 0.00 0.00 3.62
7540 10281 3.288809 ACGTACGTACTCCCTTTGTTC 57.711 47.619 21.41 0.00 0.00 3.18
7541 10282 3.191371 CCTACGTACGTACTCCCTTTGTT 59.809 47.826 23.60 0.00 0.00 2.83
7542 10283 2.749621 CCTACGTACGTACTCCCTTTGT 59.250 50.000 23.60 13.45 0.00 2.83
7543 10284 2.749621 ACCTACGTACGTACTCCCTTTG 59.250 50.000 23.60 11.40 0.00 2.77
7544 10285 3.073274 ACCTACGTACGTACTCCCTTT 57.927 47.619 23.60 0.00 0.00 3.11
7545 10286 2.789409 ACCTACGTACGTACTCCCTT 57.211 50.000 23.60 0.00 0.00 3.95
7546 10287 3.906720 TTACCTACGTACGTACTCCCT 57.093 47.619 23.60 7.28 0.00 4.20
7547 10288 6.803154 ATTATTACCTACGTACGTACTCCC 57.197 41.667 23.60 0.00 0.00 4.30
7548 10289 7.010023 CGAATTATTACCTACGTACGTACTCC 58.990 42.308 23.60 0.00 0.00 3.85
7549 10290 7.564988 ACGAATTATTACCTACGTACGTACTC 58.435 38.462 23.60 3.08 32.42 2.59
7550 10291 7.438459 AGACGAATTATTACCTACGTACGTACT 59.562 37.037 23.60 13.87 34.26 2.73
7551 10292 7.564988 AGACGAATTATTACCTACGTACGTAC 58.435 38.462 23.60 15.90 34.26 3.67
7552 10293 7.095774 GGAGACGAATTATTACCTACGTACGTA 60.096 40.741 25.41 25.41 34.26 3.57
7553 10294 6.292919 GGAGACGAATTATTACCTACGTACGT 60.293 42.308 25.98 25.98 34.26 3.57
7554 10295 6.073548 AGGAGACGAATTATTACCTACGTACG 60.074 42.308 15.01 15.01 34.26 3.67
7589 10330 8.973228 CAGGAACTCAACTCAGGATGAAGCAT 62.973 46.154 0.00 0.00 41.80 3.79
7590 10331 7.766155 CAGGAACTCAACTCAGGATGAAGCA 62.766 48.000 0.00 0.00 41.80 3.91
7662 10404 2.746362 GAGCAGGTTCTGGATCAAAGTG 59.254 50.000 0.00 0.00 31.21 3.16
7718 10475 2.128035 GATGTATGTACTCGTGCCTGC 58.872 52.381 0.00 0.00 0.00 4.85
7725 10482 9.784680 AAAACAGTAACTAGATGTATGTACTCG 57.215 33.333 0.00 0.00 0.00 4.18
7787 10544 2.475111 AGTACAATTCACGCTTCACACG 59.525 45.455 0.00 0.00 0.00 4.49
7816 10573 4.392921 ACTCCTGTGCAGTATCATGTAC 57.607 45.455 0.00 0.00 36.46 2.90
7817 10574 4.341235 GGTACTCCTGTGCAGTATCATGTA 59.659 45.833 0.00 0.00 29.12 2.29
7818 10575 3.133003 GGTACTCCTGTGCAGTATCATGT 59.867 47.826 0.00 0.00 29.12 3.21
7819 10576 3.132824 TGGTACTCCTGTGCAGTATCATG 59.867 47.826 0.00 0.00 33.37 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.