Multiple sequence alignment - TraesCS4D01G202200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G202200 chr4D 100.000 7316 0 0 1 7316 349182410 349189725 0.000000e+00 13511
1 TraesCS4D01G202200 chr4D 88.083 193 22 1 1 192 436724976 436725168 2.050000e-55 228
2 TraesCS4D01G202200 chr4A 94.897 5467 169 38 189 5601 115796175 115790765 0.000000e+00 8449
3 TraesCS4D01G202200 chr4A 95.483 1727 61 5 5594 7316 115790627 115788914 0.000000e+00 2741
4 TraesCS4D01G202200 chr4B 95.933 4180 93 15 189 4310 431787995 431792155 0.000000e+00 6706
5 TraesCS4D01G202200 chr4B 94.260 1690 54 13 5655 7316 431793820 431795494 0.000000e+00 2543
6 TraesCS4D01G202200 chr4B 97.753 979 19 3 4624 5601 431792672 431793648 0.000000e+00 1683
7 TraesCS4D01G202200 chr4B 98.588 354 3 2 4309 4661 431792315 431792667 6.230000e-175 625
8 TraesCS4D01G202200 chr6A 92.637 1168 56 11 3175 4328 222558374 222557223 0.000000e+00 1653
9 TraesCS4D01G202200 chr7B 92.436 661 27 7 3677 4328 706224762 706225408 0.000000e+00 922
10 TraesCS4D01G202200 chr6B 91.679 661 31 8 3677 4328 119107593 119106948 0.000000e+00 894
11 TraesCS4D01G202200 chr6B 87.831 189 23 0 1 189 511090480 511090292 9.550000e-54 222
12 TraesCS4D01G202200 chr1B 76.865 1314 275 24 1135 2436 44072049 44070753 0.000000e+00 715
13 TraesCS4D01G202200 chr1B 88.360 189 22 0 1 189 463887146 463886958 2.050000e-55 228
14 TraesCS4D01G202200 chr1B 80.000 215 41 2 1336 1548 371475558 371475772 2.730000e-34 158
15 TraesCS4D01G202200 chr1D 76.730 1315 275 26 1135 2436 27900278 27898982 0.000000e+00 704
16 TraesCS4D01G202200 chr1A 76.822 1290 268 26 1160 2436 28762227 28760956 0.000000e+00 697
17 TraesCS4D01G202200 chr1A 90.230 174 17 0 1 174 1300111 1300284 2.050000e-55 228
18 TraesCS4D01G202200 chr3B 85.445 371 44 8 2074 2440 311115050 311115414 1.930000e-100 377
19 TraesCS4D01G202200 chr3B 88.889 189 21 0 1 189 583602041 583602229 4.410000e-57 233
20 TraesCS4D01G202200 chr3B 88.360 189 22 0 1 189 441121503 441121315 2.050000e-55 228
21 TraesCS4D01G202200 chr3B 76.399 411 92 5 1336 1743 769467584 769467992 4.440000e-52 217
22 TraesCS4D01G202200 chr5D 88.770 187 21 0 1 187 343472085 343472271 5.710000e-56 230
23 TraesCS4D01G202200 chr5D 90.667 75 6 1 1336 1409 88351902 88351828 1.680000e-16 99
24 TraesCS4D01G202200 chr3D 88.235 187 22 0 1 187 199216616 199216430 2.660000e-54 224
25 TraesCS4D01G202200 chr2B 87.179 195 25 0 1 195 100916140 100916334 9.550000e-54 222
26 TraesCS4D01G202200 chr3A 81.707 246 37 6 1239 1483 692344733 692344971 1.610000e-46 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G202200 chr4D 349182410 349189725 7315 False 13511.00 13511 100.0000 1 7316 1 chr4D.!!$F1 7315
1 TraesCS4D01G202200 chr4A 115788914 115796175 7261 True 5595.00 8449 95.1900 189 7316 2 chr4A.!!$R1 7127
2 TraesCS4D01G202200 chr4B 431787995 431795494 7499 False 2889.25 6706 96.6335 189 7316 4 chr4B.!!$F1 7127
3 TraesCS4D01G202200 chr6A 222557223 222558374 1151 True 1653.00 1653 92.6370 3175 4328 1 chr6A.!!$R1 1153
4 TraesCS4D01G202200 chr7B 706224762 706225408 646 False 922.00 922 92.4360 3677 4328 1 chr7B.!!$F1 651
5 TraesCS4D01G202200 chr6B 119106948 119107593 645 True 894.00 894 91.6790 3677 4328 1 chr6B.!!$R1 651
6 TraesCS4D01G202200 chr1B 44070753 44072049 1296 True 715.00 715 76.8650 1135 2436 1 chr1B.!!$R1 1301
7 TraesCS4D01G202200 chr1D 27898982 27900278 1296 True 704.00 704 76.7300 1135 2436 1 chr1D.!!$R1 1301
8 TraesCS4D01G202200 chr1A 28760956 28762227 1271 True 697.00 697 76.8220 1160 2436 1 chr1A.!!$R1 1276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.257039 ACTCCCCATTGTGATCAGCC 59.743 55.000 0.0 0.0 0.0 4.85 F
186 187 0.549950 CTCCCCATTGTGATCAGCCT 59.450 55.000 0.0 0.0 0.0 4.58 F
1947 2009 0.109342 CCTGGGAGTATGTGGATGGC 59.891 60.000 0.0 0.0 0.0 4.40 F
2103 2165 2.105006 TGGCTCAGAAGAATGCACTC 57.895 50.000 0.0 0.0 0.0 3.51 F
2909 2972 3.119708 GCTGCTTGTGAAGGTATTTGGAG 60.120 47.826 0.0 0.0 0.0 3.86 F
4047 4116 1.600957 GGTGATGGAGTGAATGATGCG 59.399 52.381 0.0 0.0 0.0 4.73 F
4852 5142 2.113910 AAGGCGTGTTTTTGTTAGCG 57.886 45.000 0.0 0.0 0.0 4.26 F
5937 6375 1.856629 CAGGGGCAAGGACATTCAAT 58.143 50.000 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 1988 1.141657 CCATCCACATACTCCCAGGTG 59.858 57.143 0.00 0.00 0.00 4.00 R
2103 2165 3.107642 ACACTGGGTAACTTTCTCACG 57.892 47.619 0.00 0.00 0.00 4.35 R
3401 3465 1.004044 CCCTCATCCAAGAGCACAACT 59.996 52.381 0.00 0.00 34.26 3.16 R
4047 4116 0.659957 CAGCTAATTTCAGAGCCGGC 59.340 55.000 21.89 21.89 39.65 6.13 R
4796 5085 1.133915 TGTGTCCCAACTTCCAAGACC 60.134 52.381 0.00 0.00 0.00 3.85 R
5799 6237 1.098050 CAATTCCCAGGAAAGAGCCG 58.902 55.000 2.65 0.00 37.69 5.52 R
6080 6518 1.074889 GAAGAAGCCAGGGGTTAACCA 59.925 52.381 25.71 0.00 42.91 3.67 R
6886 7354 0.961753 GGTCAGGTGAAGCCAAAAGG 59.038 55.000 0.00 0.00 40.61 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.607988 TGTTACTGTAACATAACATATCCCAAG 57.392 33.333 25.14 0.00 43.23 3.61
49 50 9.052759 GTTACTGTAACATAACATATCCCAAGG 57.947 37.037 22.30 0.00 38.52 3.61
50 51 6.062095 ACTGTAACATAACATATCCCAAGGC 58.938 40.000 0.00 0.00 0.00 4.35
51 52 6.007485 TGTAACATAACATATCCCAAGGCA 57.993 37.500 0.00 0.00 0.00 4.75
52 53 6.427441 TGTAACATAACATATCCCAAGGCAA 58.573 36.000 0.00 0.00 0.00 4.52
53 54 6.892456 TGTAACATAACATATCCCAAGGCAAA 59.108 34.615 0.00 0.00 0.00 3.68
54 55 6.865834 AACATAACATATCCCAAGGCAAAA 57.134 33.333 0.00 0.00 0.00 2.44
55 56 7.436320 AACATAACATATCCCAAGGCAAAAT 57.564 32.000 0.00 0.00 0.00 1.82
56 57 6.819284 ACATAACATATCCCAAGGCAAAATG 58.181 36.000 0.00 0.00 0.00 2.32
57 58 6.610830 ACATAACATATCCCAAGGCAAAATGA 59.389 34.615 0.00 0.00 0.00 2.57
58 59 5.603170 AACATATCCCAAGGCAAAATGAG 57.397 39.130 0.00 0.00 0.00 2.90
59 60 4.613437 ACATATCCCAAGGCAAAATGAGT 58.387 39.130 0.00 0.00 0.00 3.41
60 61 4.646492 ACATATCCCAAGGCAAAATGAGTC 59.354 41.667 0.00 0.00 0.00 3.36
61 62 2.978156 TCCCAAGGCAAAATGAGTCT 57.022 45.000 0.00 0.00 0.00 3.24
62 63 4.591321 ATCCCAAGGCAAAATGAGTCTA 57.409 40.909 0.00 0.00 0.00 2.59
63 64 4.591321 TCCCAAGGCAAAATGAGTCTAT 57.409 40.909 0.00 0.00 0.00 1.98
64 65 5.708736 TCCCAAGGCAAAATGAGTCTATA 57.291 39.130 0.00 0.00 0.00 1.31
65 66 6.266131 TCCCAAGGCAAAATGAGTCTATAT 57.734 37.500 0.00 0.00 0.00 0.86
66 67 6.672593 TCCCAAGGCAAAATGAGTCTATATT 58.327 36.000 0.00 0.00 0.00 1.28
67 68 7.125391 TCCCAAGGCAAAATGAGTCTATATTT 58.875 34.615 0.00 0.00 0.00 1.40
68 69 7.619302 TCCCAAGGCAAAATGAGTCTATATTTT 59.381 33.333 0.00 0.00 37.06 1.82
69 70 8.912988 CCCAAGGCAAAATGAGTCTATATTTTA 58.087 33.333 6.86 0.00 35.40 1.52
100 101 7.652524 AATGGTTTGCATAATACCACATACA 57.347 32.000 11.28 0.00 44.16 2.29
101 102 7.838079 ATGGTTTGCATAATACCACATACAT 57.162 32.000 11.28 0.00 44.16 2.29
102 103 7.036996 TGGTTTGCATAATACCACATACATG 57.963 36.000 6.45 0.00 37.04 3.21
103 104 6.605194 TGGTTTGCATAATACCACATACATGT 59.395 34.615 2.69 2.69 42.84 3.21
104 105 7.123397 TGGTTTGCATAATACCACATACATGTT 59.877 33.333 2.30 0.00 39.39 2.71
105 106 8.625651 GGTTTGCATAATACCACATACATGTTA 58.374 33.333 2.30 0.00 39.39 2.41
106 107 9.445786 GTTTGCATAATACCACATACATGTTAC 57.554 33.333 2.30 0.00 39.39 2.50
107 108 8.738645 TTGCATAATACCACATACATGTTACA 57.261 30.769 2.30 0.00 39.39 2.41
108 109 8.738645 TGCATAATACCACATACATGTTACAA 57.261 30.769 2.30 0.00 39.39 2.41
109 110 8.616942 TGCATAATACCACATACATGTTACAAC 58.383 33.333 2.30 0.00 39.39 3.32
110 111 8.073768 GCATAATACCACATACATGTTACAACC 58.926 37.037 2.30 0.00 39.39 3.77
111 112 8.564574 CATAATACCACATACATGTTACAACCC 58.435 37.037 2.30 0.00 39.39 4.11
112 113 4.374689 ACCACATACATGTTACAACCCA 57.625 40.909 2.30 0.00 39.39 4.51
113 114 4.076394 ACCACATACATGTTACAACCCAC 58.924 43.478 2.30 0.00 39.39 4.61
114 115 4.202524 ACCACATACATGTTACAACCCACT 60.203 41.667 2.30 0.00 39.39 4.00
115 116 5.013287 ACCACATACATGTTACAACCCACTA 59.987 40.000 2.30 0.00 39.39 2.74
116 117 6.119536 CCACATACATGTTACAACCCACTAT 58.880 40.000 2.30 0.00 39.39 2.12
117 118 7.092802 ACCACATACATGTTACAACCCACTATA 60.093 37.037 2.30 0.00 39.39 1.31
118 119 7.771361 CCACATACATGTTACAACCCACTATAA 59.229 37.037 2.30 0.00 39.39 0.98
119 120 9.168451 CACATACATGTTACAACCCACTATAAA 57.832 33.333 2.30 0.00 39.39 1.40
120 121 9.391006 ACATACATGTTACAACCCACTATAAAG 57.609 33.333 2.30 0.00 37.90 1.85
121 122 8.836413 CATACATGTTACAACCCACTATAAAGG 58.164 37.037 2.30 0.00 0.00 3.11
122 123 6.786122 ACATGTTACAACCCACTATAAAGGT 58.214 36.000 0.00 0.00 34.60 3.50
123 124 6.657541 ACATGTTACAACCCACTATAAAGGTG 59.342 38.462 0.00 0.00 33.05 4.00
148 149 9.138596 TGGTAACATAGACTAGTAACATATGCA 57.861 33.333 1.58 0.00 46.17 3.96
151 152 8.539770 AACATAGACTAGTAACATATGCATGC 57.460 34.615 11.82 11.82 35.39 4.06
152 153 6.808704 ACATAGACTAGTAACATATGCATGCG 59.191 38.462 14.09 2.21 35.39 4.73
153 154 3.990469 AGACTAGTAACATATGCATGCGC 59.010 43.478 14.09 0.00 35.39 6.09
154 155 3.067106 ACTAGTAACATATGCATGCGCC 58.933 45.455 14.09 0.00 37.32 6.53
155 156 2.260844 AGTAACATATGCATGCGCCT 57.739 45.000 14.09 2.68 37.32 5.52
156 157 3.401033 AGTAACATATGCATGCGCCTA 57.599 42.857 14.09 5.06 37.32 3.93
157 158 3.329386 AGTAACATATGCATGCGCCTAG 58.671 45.455 14.09 4.33 37.32 3.02
158 159 2.260844 AACATATGCATGCGCCTAGT 57.739 45.000 14.09 5.00 37.32 2.57
159 160 1.800805 ACATATGCATGCGCCTAGTC 58.199 50.000 14.09 0.00 37.32 2.59
160 161 1.081892 CATATGCATGCGCCTAGTCC 58.918 55.000 14.09 0.00 37.32 3.85
161 162 0.686789 ATATGCATGCGCCTAGTCCA 59.313 50.000 14.09 0.00 37.32 4.02
162 163 0.467804 TATGCATGCGCCTAGTCCAA 59.532 50.000 14.09 0.00 37.32 3.53
163 164 0.394216 ATGCATGCGCCTAGTCCAAA 60.394 50.000 14.09 0.00 37.32 3.28
164 165 0.394216 TGCATGCGCCTAGTCCAAAT 60.394 50.000 14.09 0.00 37.32 2.32
165 166 0.740737 GCATGCGCCTAGTCCAAATT 59.259 50.000 4.18 0.00 0.00 1.82
166 167 1.946768 GCATGCGCCTAGTCCAAATTA 59.053 47.619 4.18 0.00 0.00 1.40
167 168 2.287009 GCATGCGCCTAGTCCAAATTAC 60.287 50.000 4.18 0.00 0.00 1.89
168 169 3.206150 CATGCGCCTAGTCCAAATTACT 58.794 45.455 4.18 0.00 0.00 2.24
169 170 2.901249 TGCGCCTAGTCCAAATTACTC 58.099 47.619 4.18 0.00 0.00 2.59
170 171 2.210961 GCGCCTAGTCCAAATTACTCC 58.789 52.381 0.00 0.00 0.00 3.85
171 172 2.835027 CGCCTAGTCCAAATTACTCCC 58.165 52.381 0.00 0.00 0.00 4.30
172 173 2.484947 CGCCTAGTCCAAATTACTCCCC 60.485 54.545 0.00 0.00 0.00 4.81
173 174 2.508300 GCCTAGTCCAAATTACTCCCCA 59.492 50.000 0.00 0.00 0.00 4.96
174 175 3.138468 GCCTAGTCCAAATTACTCCCCAT 59.862 47.826 0.00 0.00 0.00 4.00
175 176 4.386424 GCCTAGTCCAAATTACTCCCCATT 60.386 45.833 0.00 0.00 0.00 3.16
176 177 5.133221 CCTAGTCCAAATTACTCCCCATTG 58.867 45.833 0.00 0.00 0.00 2.82
177 178 4.675063 AGTCCAAATTACTCCCCATTGT 57.325 40.909 0.00 0.00 0.00 2.71
178 179 4.344104 AGTCCAAATTACTCCCCATTGTG 58.656 43.478 0.00 0.00 0.00 3.33
179 180 4.044065 AGTCCAAATTACTCCCCATTGTGA 59.956 41.667 0.00 0.00 0.00 3.58
180 181 4.956075 GTCCAAATTACTCCCCATTGTGAT 59.044 41.667 0.00 0.00 0.00 3.06
181 182 5.067805 GTCCAAATTACTCCCCATTGTGATC 59.932 44.000 0.00 0.00 0.00 2.92
182 183 4.955450 CCAAATTACTCCCCATTGTGATCA 59.045 41.667 0.00 0.00 0.00 2.92
183 184 5.068198 CCAAATTACTCCCCATTGTGATCAG 59.932 44.000 0.00 0.00 0.00 2.90
184 185 3.281727 TTACTCCCCATTGTGATCAGC 57.718 47.619 0.00 0.00 0.00 4.26
185 186 0.257039 ACTCCCCATTGTGATCAGCC 59.743 55.000 0.00 0.00 0.00 4.85
186 187 0.549950 CTCCCCATTGTGATCAGCCT 59.450 55.000 0.00 0.00 0.00 4.58
187 188 1.770658 CTCCCCATTGTGATCAGCCTA 59.229 52.381 0.00 0.00 0.00 3.93
409 412 3.565214 TGTGGGCCAAGGCTCGAA 61.565 61.111 8.40 0.00 46.35 3.71
577 601 1.843368 AAGTAGTACTAGCCGCCACA 58.157 50.000 1.87 0.00 0.00 4.17
620 645 0.753262 CGAAGGGTCCCACCTCATAG 59.247 60.000 11.55 0.00 40.87 2.23
655 680 3.316308 GCAGACACACAAAAGTCCAAGAT 59.684 43.478 0.00 0.00 35.38 2.40
660 685 5.680619 ACACACAAAAGTCCAAGATGACTA 58.319 37.500 0.00 0.00 44.68 2.59
661 686 5.760253 ACACACAAAAGTCCAAGATGACTAG 59.240 40.000 0.00 0.00 44.68 2.57
662 687 5.180117 CACACAAAAGTCCAAGATGACTAGG 59.820 44.000 0.00 0.00 44.68 3.02
663 688 4.697352 CACAAAAGTCCAAGATGACTAGGG 59.303 45.833 0.00 0.00 44.68 3.53
664 689 4.597507 ACAAAAGTCCAAGATGACTAGGGA 59.402 41.667 0.00 0.00 44.68 4.20
665 690 5.073144 ACAAAAGTCCAAGATGACTAGGGAA 59.927 40.000 0.00 0.00 44.68 3.97
666 691 6.183347 CAAAAGTCCAAGATGACTAGGGAAT 58.817 40.000 0.00 0.00 44.68 3.01
1866 1928 2.811317 GAGTTCGGTGAGGCGCTG 60.811 66.667 7.64 0.00 0.00 5.18
1926 1988 6.238130 GGCTCATTAACGTCAAGTATTTCCTC 60.238 42.308 0.00 0.00 0.00 3.71
1947 2009 0.109342 CCTGGGAGTATGTGGATGGC 59.891 60.000 0.00 0.00 0.00 4.40
2103 2165 2.105006 TGGCTCAGAAGAATGCACTC 57.895 50.000 0.00 0.00 0.00 3.51
2256 2318 6.715264 CACTTAGGAACTTTAAGGTTGATGGT 59.285 38.462 7.81 0.00 41.75 3.55
2385 2447 7.999441 CAAGTATTGCACACTCTGAGCATCAA 61.999 42.308 4.19 4.85 42.73 2.57
2487 2550 4.753233 TGTTGCATGTTGCTTTTACTTGT 58.247 34.783 0.75 0.00 45.31 3.16
2498 2561 8.462811 TGTTGCTTTTACTTGTCAATTCTACAA 58.537 29.630 3.53 3.53 35.61 2.41
2573 2636 8.561738 ACAGTAATTTTATCACTTGTACTGGG 57.438 34.615 11.40 0.00 40.67 4.45
2818 2881 3.767673 ACGATGCTAAAAGAGTAGGGACA 59.232 43.478 0.00 0.00 0.00 4.02
2909 2972 3.119708 GCTGCTTGTGAAGGTATTTGGAG 60.120 47.826 0.00 0.00 0.00 3.86
2912 2975 5.815581 TGCTTGTGAAGGTATTTGGAGTAT 58.184 37.500 0.00 0.00 0.00 2.12
2970 3033 7.698836 ATGTTGCACTTTTGTATTTCAAGTC 57.301 32.000 0.00 0.00 37.35 3.01
3029 3092 7.994425 TGGCTTACTCACATTTTATTCTTCA 57.006 32.000 0.00 0.00 0.00 3.02
3134 3198 6.807230 GCTCATCTTTGCCATATCATCAAATC 59.193 38.462 0.00 0.00 0.00 2.17
3401 3465 3.548745 ATTCAGTTGCTCGATGGATCA 57.451 42.857 0.00 0.00 0.00 2.92
4047 4116 1.600957 GGTGATGGAGTGAATGATGCG 59.399 52.381 0.00 0.00 0.00 4.73
4203 4285 9.019764 CATTGTTAGCTTATTTGGTTATTTCCG 57.980 33.333 0.00 0.00 0.00 4.30
4538 4784 8.724229 GCCTTCATTAGATTTTCATTGCTTTTT 58.276 29.630 0.00 0.00 0.00 1.94
4796 5085 2.599578 ACTTGCTGCCTGGCCAAG 60.600 61.111 26.22 26.22 0.00 3.61
4852 5142 2.113910 AAGGCGTGTTTTTGTTAGCG 57.886 45.000 0.00 0.00 0.00 4.26
4880 5170 3.044235 CATGTGCAGAGTGGACTTGTA 57.956 47.619 6.36 0.00 39.59 2.41
4891 5181 3.881089 AGTGGACTTGTAACCTTTTTCCG 59.119 43.478 0.00 0.00 0.00 4.30
5158 5448 3.126001 TCGAACATTGGAGAAGTTGCT 57.874 42.857 0.00 0.00 0.00 3.91
5518 5808 4.330074 CCTTATAAACAGTCAGCACTTCCG 59.670 45.833 0.00 0.00 0.00 4.30
5544 5834 9.956797 GCAACAAGCATTTTGTTAGTATTTATG 57.043 29.630 5.10 0.00 44.79 1.90
5572 5862 9.196552 CCAGAAATTAAAACAAGAGTTCATTCC 57.803 33.333 0.00 0.00 36.84 3.01
5592 5882 8.336235 TCATTCCTAATTAAATGAACTGGGAGT 58.664 33.333 9.24 0.00 38.57 3.85
5634 6071 4.441913 GGTCTTTTGGCACATCATTATGGG 60.442 45.833 0.00 0.00 39.30 4.00
5646 6083 2.852449 TCATTATGGGTCTTCTGGCCTT 59.148 45.455 3.32 0.00 0.00 4.35
5647 6084 4.044308 TCATTATGGGTCTTCTGGCCTTA 58.956 43.478 3.32 0.00 0.00 2.69
5648 6085 4.665009 TCATTATGGGTCTTCTGGCCTTAT 59.335 41.667 3.32 0.00 0.00 1.73
5649 6086 5.134339 TCATTATGGGTCTTCTGGCCTTATT 59.866 40.000 3.32 0.00 0.00 1.40
5650 6087 2.806945 TGGGTCTTCTGGCCTTATTG 57.193 50.000 3.32 0.00 0.00 1.90
5651 6088 2.274542 TGGGTCTTCTGGCCTTATTGA 58.725 47.619 3.32 0.00 0.00 2.57
5652 6089 2.852449 TGGGTCTTCTGGCCTTATTGAT 59.148 45.455 3.32 0.00 0.00 2.57
5653 6090 3.269381 TGGGTCTTCTGGCCTTATTGATT 59.731 43.478 3.32 0.00 0.00 2.57
5654 6091 4.264352 TGGGTCTTCTGGCCTTATTGATTT 60.264 41.667 3.32 0.00 0.00 2.17
5799 6237 7.439655 GGAATCTTTATCATCTGGTACACTCAC 59.560 40.741 0.00 0.00 0.00 3.51
5937 6375 1.856629 CAGGGGCAAGGACATTCAAT 58.143 50.000 0.00 0.00 0.00 2.57
6080 6518 1.409802 CCTTCTGAGCATGCCTCCATT 60.410 52.381 15.66 0.00 39.98 3.16
6240 6678 1.866015 TCCCAGTGGTTCTCATCGAT 58.134 50.000 8.74 0.00 0.00 3.59
6372 6810 1.606889 GACGTCTGGTGAGACCCCT 60.607 63.158 8.70 0.00 45.27 4.79
6429 6867 2.923121 TGAGCATGATGGAAGTTAGGC 58.077 47.619 0.00 0.00 0.00 3.93
6546 6984 4.331968 CATGGTTTCTTGCCCACTTACTA 58.668 43.478 0.00 0.00 32.49 1.82
6557 6996 6.368779 TGCCCACTTACTACAGTAATCTTT 57.631 37.500 2.43 0.00 39.49 2.52
6709 7175 7.287696 TGCCGATCATATACATATCCATAGTGT 59.712 37.037 0.00 0.00 0.00 3.55
6741 7207 8.690203 TTTTGTGAAATCAGGAGAATCTGTTA 57.310 30.769 0.00 0.00 36.25 2.41
6763 7231 7.559533 TGTTACTCCTTATTGGTACGGTACATA 59.440 37.037 19.14 7.32 37.07 2.29
6845 7313 7.693952 ACATGCTATAAACACTAAATTGACCG 58.306 34.615 0.00 0.00 0.00 4.79
6846 7314 7.551262 ACATGCTATAAACACTAAATTGACCGA 59.449 33.333 0.00 0.00 0.00 4.69
6886 7354 0.505655 GTACAACGTGGACGAAGCAC 59.494 55.000 6.12 0.00 43.02 4.40
6923 7391 1.202348 ACCTCGTCGCTCTTGATCATG 60.202 52.381 0.00 0.00 0.00 3.07
6959 7427 1.683917 CTCAGGGACATTCCGTCTAGG 59.316 57.143 0.00 0.00 44.70 3.02
7031 7499 3.303135 AGGCGACGCTGAACCTCA 61.303 61.111 20.77 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.326413 ACAGTAACATATTATGCTACTTCAACC 57.674 33.333 14.32 0.00 39.45 3.77
23 24 9.052759 CCTTGGGATATGTTATGTTACAGTAAC 57.947 37.037 15.58 15.58 39.11 2.50
24 25 7.717875 GCCTTGGGATATGTTATGTTACAGTAA 59.282 37.037 0.00 0.00 0.00 2.24
25 26 7.147461 TGCCTTGGGATATGTTATGTTACAGTA 60.147 37.037 0.00 0.00 0.00 2.74
26 27 6.062095 GCCTTGGGATATGTTATGTTACAGT 58.938 40.000 0.00 0.00 0.00 3.55
27 28 6.061441 TGCCTTGGGATATGTTATGTTACAG 58.939 40.000 0.00 0.00 0.00 2.74
28 29 6.007485 TGCCTTGGGATATGTTATGTTACA 57.993 37.500 0.00 0.00 0.00 2.41
29 30 6.952773 TTGCCTTGGGATATGTTATGTTAC 57.047 37.500 0.00 0.00 0.00 2.50
30 31 7.962995 TTTTGCCTTGGGATATGTTATGTTA 57.037 32.000 0.00 0.00 0.00 2.41
31 32 6.865834 TTTTGCCTTGGGATATGTTATGTT 57.134 33.333 0.00 0.00 0.00 2.71
32 33 6.610830 TCATTTTGCCTTGGGATATGTTATGT 59.389 34.615 0.00 0.00 0.00 2.29
33 34 7.053316 TCATTTTGCCTTGGGATATGTTATG 57.947 36.000 0.00 0.00 0.00 1.90
34 35 6.840705 ACTCATTTTGCCTTGGGATATGTTAT 59.159 34.615 0.00 0.00 0.00 1.89
35 36 6.194235 ACTCATTTTGCCTTGGGATATGTTA 58.806 36.000 0.00 0.00 0.00 2.41
36 37 5.025453 ACTCATTTTGCCTTGGGATATGTT 58.975 37.500 0.00 0.00 0.00 2.71
37 38 4.613437 ACTCATTTTGCCTTGGGATATGT 58.387 39.130 0.00 0.00 0.00 2.29
38 39 4.891756 AGACTCATTTTGCCTTGGGATATG 59.108 41.667 0.00 0.00 0.00 1.78
39 40 5.134725 AGACTCATTTTGCCTTGGGATAT 57.865 39.130 0.00 0.00 0.00 1.63
40 41 4.591321 AGACTCATTTTGCCTTGGGATA 57.409 40.909 0.00 0.00 0.00 2.59
41 42 3.463048 AGACTCATTTTGCCTTGGGAT 57.537 42.857 0.00 0.00 0.00 3.85
42 43 2.978156 AGACTCATTTTGCCTTGGGA 57.022 45.000 0.00 0.00 0.00 4.37
43 44 6.966534 AATATAGACTCATTTTGCCTTGGG 57.033 37.500 0.00 0.00 0.00 4.12
74 75 9.360901 TGTATGTGGTATTATGCAAACCATTAT 57.639 29.630 14.32 13.64 44.69 1.28
75 76 8.753497 TGTATGTGGTATTATGCAAACCATTA 57.247 30.769 14.32 8.98 44.69 1.90
76 77 7.652524 TGTATGTGGTATTATGCAAACCATT 57.347 32.000 14.32 9.35 44.69 3.16
77 78 7.287466 ACATGTATGTGGTATTATGCAAACCAT 59.713 33.333 14.32 5.09 44.69 3.55
78 79 6.605194 ACATGTATGTGGTATTATGCAAACCA 59.395 34.615 0.00 8.91 40.03 3.67
79 80 7.038154 ACATGTATGTGGTATTATGCAAACC 57.962 36.000 0.00 0.00 40.03 3.27
80 81 9.445786 GTAACATGTATGTGGTATTATGCAAAC 57.554 33.333 0.00 0.00 41.61 2.93
81 82 9.178758 TGTAACATGTATGTGGTATTATGCAAA 57.821 29.630 0.00 0.00 41.61 3.68
82 83 8.738645 TGTAACATGTATGTGGTATTATGCAA 57.261 30.769 0.00 0.00 41.61 4.08
83 84 8.616942 GTTGTAACATGTATGTGGTATTATGCA 58.383 33.333 0.00 0.00 41.61 3.96
84 85 8.073768 GGTTGTAACATGTATGTGGTATTATGC 58.926 37.037 0.00 0.00 41.61 3.14
85 86 8.564574 GGGTTGTAACATGTATGTGGTATTATG 58.435 37.037 0.00 0.00 41.61 1.90
86 87 8.275758 TGGGTTGTAACATGTATGTGGTATTAT 58.724 33.333 0.00 0.00 41.61 1.28
87 88 7.553402 GTGGGTTGTAACATGTATGTGGTATTA 59.447 37.037 0.00 0.00 41.61 0.98
88 89 6.376018 GTGGGTTGTAACATGTATGTGGTATT 59.624 38.462 0.00 0.00 41.61 1.89
89 90 5.883673 GTGGGTTGTAACATGTATGTGGTAT 59.116 40.000 0.00 0.00 41.61 2.73
90 91 5.013287 AGTGGGTTGTAACATGTATGTGGTA 59.987 40.000 0.00 0.00 41.61 3.25
91 92 4.076394 GTGGGTTGTAACATGTATGTGGT 58.924 43.478 0.00 0.00 41.61 4.16
92 93 4.331968 AGTGGGTTGTAACATGTATGTGG 58.668 43.478 0.00 0.00 41.61 4.17
93 94 8.725405 TTATAGTGGGTTGTAACATGTATGTG 57.275 34.615 0.00 0.00 41.61 3.21
94 95 9.391006 CTTTATAGTGGGTTGTAACATGTATGT 57.609 33.333 0.00 0.00 44.20 2.29
95 96 8.836413 CCTTTATAGTGGGTTGTAACATGTATG 58.164 37.037 0.00 0.00 0.00 2.39
96 97 8.554011 ACCTTTATAGTGGGTTGTAACATGTAT 58.446 33.333 0.00 0.00 0.00 2.29
97 98 7.825270 CACCTTTATAGTGGGTTGTAACATGTA 59.175 37.037 0.00 0.00 0.00 2.29
98 99 6.657541 CACCTTTATAGTGGGTTGTAACATGT 59.342 38.462 0.00 0.00 0.00 3.21
99 100 7.083875 CACCTTTATAGTGGGTTGTAACATG 57.916 40.000 0.00 0.00 0.00 3.21
112 113 9.933240 ACTAGTCTATGTTACCACCTTTATAGT 57.067 33.333 0.00 0.00 0.00 2.12
116 117 9.532494 TGTTACTAGTCTATGTTACCACCTTTA 57.468 33.333 0.00 0.00 0.00 1.85
117 118 8.426569 TGTTACTAGTCTATGTTACCACCTTT 57.573 34.615 0.00 0.00 0.00 3.11
118 119 8.605325 ATGTTACTAGTCTATGTTACCACCTT 57.395 34.615 0.00 0.00 0.00 3.50
119 120 9.878737 ATATGTTACTAGTCTATGTTACCACCT 57.121 33.333 0.00 0.00 0.00 4.00
120 121 9.909644 CATATGTTACTAGTCTATGTTACCACC 57.090 37.037 0.00 0.00 0.00 4.61
121 122 9.408069 GCATATGTTACTAGTCTATGTTACCAC 57.592 37.037 0.00 0.00 0.00 4.16
122 123 9.138596 TGCATATGTTACTAGTCTATGTTACCA 57.861 33.333 0.00 0.00 0.00 3.25
125 126 9.639601 GCATGCATATGTTACTAGTCTATGTTA 57.360 33.333 14.21 0.00 36.65 2.41
126 127 7.329471 CGCATGCATATGTTACTAGTCTATGTT 59.671 37.037 19.57 0.00 36.65 2.71
127 128 6.808704 CGCATGCATATGTTACTAGTCTATGT 59.191 38.462 19.57 0.00 36.65 2.29
128 129 6.237675 GCGCATGCATATGTTACTAGTCTATG 60.238 42.308 19.57 4.69 42.15 2.23
129 130 5.807520 GCGCATGCATATGTTACTAGTCTAT 59.192 40.000 19.57 0.00 42.15 1.98
130 131 5.161358 GCGCATGCATATGTTACTAGTCTA 58.839 41.667 19.57 0.00 42.15 2.59
131 132 3.990469 GCGCATGCATATGTTACTAGTCT 59.010 43.478 19.57 0.00 42.15 3.24
132 133 3.123621 GGCGCATGCATATGTTACTAGTC 59.876 47.826 19.57 0.00 45.35 2.59
133 134 3.067106 GGCGCATGCATATGTTACTAGT 58.933 45.455 19.57 0.00 45.35 2.57
134 135 3.329386 AGGCGCATGCATATGTTACTAG 58.671 45.455 19.57 0.00 45.35 2.57
135 136 3.401033 AGGCGCATGCATATGTTACTA 57.599 42.857 19.57 0.00 45.35 1.82
136 137 2.260844 AGGCGCATGCATATGTTACT 57.739 45.000 19.57 0.23 45.35 2.24
137 138 3.067106 ACTAGGCGCATGCATATGTTAC 58.933 45.455 19.57 0.00 45.35 2.50
138 139 3.325870 GACTAGGCGCATGCATATGTTA 58.674 45.455 19.57 0.22 45.35 2.41
139 140 2.146342 GACTAGGCGCATGCATATGTT 58.854 47.619 19.57 0.00 45.35 2.71
140 141 1.609061 GGACTAGGCGCATGCATATGT 60.609 52.381 19.57 9.16 45.35 2.29
141 142 1.081892 GGACTAGGCGCATGCATATG 58.918 55.000 19.57 1.75 45.35 1.78
142 143 0.686789 TGGACTAGGCGCATGCATAT 59.313 50.000 19.57 4.56 45.35 1.78
143 144 0.467804 TTGGACTAGGCGCATGCATA 59.532 50.000 19.57 6.31 45.35 3.14
144 145 0.394216 TTTGGACTAGGCGCATGCAT 60.394 50.000 19.57 5.35 45.35 3.96
145 146 0.394216 ATTTGGACTAGGCGCATGCA 60.394 50.000 19.57 0.00 45.35 3.96
146 147 0.740737 AATTTGGACTAGGCGCATGC 59.259 50.000 10.83 7.91 41.71 4.06
147 148 3.206150 AGTAATTTGGACTAGGCGCATG 58.794 45.455 10.83 0.00 0.00 4.06
148 149 3.467803 GAGTAATTTGGACTAGGCGCAT 58.532 45.455 10.83 3.98 0.00 4.73
149 150 2.419574 GGAGTAATTTGGACTAGGCGCA 60.420 50.000 10.83 0.00 0.00 6.09
150 151 2.210961 GGAGTAATTTGGACTAGGCGC 58.789 52.381 0.00 0.00 0.00 6.53
151 152 2.484947 GGGGAGTAATTTGGACTAGGCG 60.485 54.545 0.00 0.00 0.00 5.52
152 153 2.508300 TGGGGAGTAATTTGGACTAGGC 59.492 50.000 0.00 0.00 0.00 3.93
153 154 5.133221 CAATGGGGAGTAATTTGGACTAGG 58.867 45.833 0.00 0.00 0.00 3.02
154 155 5.590259 CACAATGGGGAGTAATTTGGACTAG 59.410 44.000 0.00 0.00 0.00 2.57
155 156 5.251932 TCACAATGGGGAGTAATTTGGACTA 59.748 40.000 0.00 0.00 0.00 2.59
156 157 4.044065 TCACAATGGGGAGTAATTTGGACT 59.956 41.667 0.00 0.00 0.00 3.85
157 158 4.340617 TCACAATGGGGAGTAATTTGGAC 58.659 43.478 0.00 0.00 0.00 4.02
158 159 4.666412 TCACAATGGGGAGTAATTTGGA 57.334 40.909 0.00 0.00 0.00 3.53
159 160 4.955450 TGATCACAATGGGGAGTAATTTGG 59.045 41.667 0.00 0.00 0.00 3.28
160 161 5.450965 GCTGATCACAATGGGGAGTAATTTG 60.451 44.000 0.00 0.00 0.00 2.32
161 162 4.646492 GCTGATCACAATGGGGAGTAATTT 59.354 41.667 0.00 0.00 0.00 1.82
162 163 4.210331 GCTGATCACAATGGGGAGTAATT 58.790 43.478 0.00 0.00 0.00 1.40
163 164 3.435601 GGCTGATCACAATGGGGAGTAAT 60.436 47.826 0.00 0.00 0.00 1.89
164 165 2.092429 GGCTGATCACAATGGGGAGTAA 60.092 50.000 0.00 0.00 0.00 2.24
165 166 1.490490 GGCTGATCACAATGGGGAGTA 59.510 52.381 0.00 0.00 0.00 2.59
166 167 0.257039 GGCTGATCACAATGGGGAGT 59.743 55.000 0.00 0.00 0.00 3.85
167 168 0.549950 AGGCTGATCACAATGGGGAG 59.450 55.000 0.00 0.00 0.00 4.30
168 169 1.891933 TAGGCTGATCACAATGGGGA 58.108 50.000 0.00 0.00 0.00 4.81
169 170 2.734755 TTAGGCTGATCACAATGGGG 57.265 50.000 0.00 0.00 0.00 4.96
170 171 5.127519 TGATTTTTAGGCTGATCACAATGGG 59.872 40.000 0.00 0.00 0.00 4.00
171 172 6.211587 TGATTTTTAGGCTGATCACAATGG 57.788 37.500 0.00 0.00 0.00 3.16
172 173 6.095860 TCCTGATTTTTAGGCTGATCACAATG 59.904 38.462 0.00 0.00 35.23 2.82
173 174 6.189859 TCCTGATTTTTAGGCTGATCACAAT 58.810 36.000 0.00 0.00 35.23 2.71
174 175 5.569355 TCCTGATTTTTAGGCTGATCACAA 58.431 37.500 0.00 0.00 35.23 3.33
175 176 5.178096 TCCTGATTTTTAGGCTGATCACA 57.822 39.130 0.00 0.00 35.23 3.58
176 177 4.578105 CCTCCTGATTTTTAGGCTGATCAC 59.422 45.833 0.00 0.00 35.23 3.06
177 178 4.785301 CCTCCTGATTTTTAGGCTGATCA 58.215 43.478 0.00 0.00 35.23 2.92
184 185 0.657840 CGCGCCTCCTGATTTTTAGG 59.342 55.000 0.00 0.00 36.63 2.69
185 186 0.657840 CCGCGCCTCCTGATTTTTAG 59.342 55.000 0.00 0.00 0.00 1.85
186 187 0.746563 CCCGCGCCTCCTGATTTTTA 60.747 55.000 0.00 0.00 0.00 1.52
187 188 2.046285 CCCGCGCCTCCTGATTTTT 61.046 57.895 0.00 0.00 0.00 1.94
419 422 1.695893 CGGTATGTGCCACTGAAGCG 61.696 60.000 0.00 0.00 0.00 4.68
421 424 1.464608 CAACGGTATGTGCCACTGAAG 59.535 52.381 0.00 0.00 0.00 3.02
537 560 3.874392 TCGATGATGATATGTGCCGAT 57.126 42.857 0.00 0.00 0.00 4.18
541 564 7.810282 AGTACTACTTTCGATGATGATATGTGC 59.190 37.037 0.00 0.00 0.00 4.57
655 680 1.913419 GGGTGGTTCATTCCCTAGTCA 59.087 52.381 0.00 0.00 38.29 3.41
659 684 1.276140 CCCGGGTGGTTCATTCCCTA 61.276 60.000 14.18 0.00 39.10 3.53
660 685 2.612493 CCCGGGTGGTTCATTCCCT 61.612 63.158 14.18 0.00 39.10 4.20
661 686 2.044352 CCCGGGTGGTTCATTCCC 60.044 66.667 14.18 0.00 37.98 3.97
662 687 2.044352 CCCCGGGTGGTTCATTCC 60.044 66.667 21.85 0.00 0.00 3.01
663 688 2.754254 GCCCCGGGTGGTTCATTC 60.754 66.667 21.85 0.00 0.00 2.67
664 689 4.733542 CGCCCCGGGTGGTTCATT 62.734 66.667 21.85 0.00 0.00 2.57
687 712 1.959899 AATCTTCGTGAGCTTGCGCG 61.960 55.000 0.00 0.00 42.32 6.86
1926 1988 1.141657 CCATCCACATACTCCCAGGTG 59.858 57.143 0.00 0.00 0.00 4.00
1947 2009 3.435671 AGAACTTAAAATTCGTCGGCCAG 59.564 43.478 2.24 0.00 0.00 4.85
2103 2165 3.107642 ACACTGGGTAACTTTCTCACG 57.892 47.619 0.00 0.00 0.00 4.35
2385 2447 2.224867 GGGCATCCCAGTAGCAACATAT 60.225 50.000 0.00 0.00 44.65 1.78
2572 2635 5.563475 GCACATGCATAATACAATCACTCCC 60.563 44.000 0.00 0.00 41.59 4.30
2573 2636 5.455392 GCACATGCATAATACAATCACTCC 58.545 41.667 0.00 0.00 41.59 3.85
2720 2783 9.145865 GTCAGGTCTTCTCTTTCTACATAAAAG 57.854 37.037 0.00 0.00 35.49 2.27
2818 2881 4.471904 TCTAGTGCGATCAAATTCCAGT 57.528 40.909 0.00 0.00 0.00 4.00
2912 2975 7.658167 TCCACAACAGAACTAAACGATATGAAA 59.342 33.333 0.00 0.00 0.00 2.69
3029 3092 8.220755 ACACGTTATGTTATTTCCAGCATTAT 57.779 30.769 0.00 0.00 38.98 1.28
3049 3112 3.676172 CGGTGTACAATGACAATACACGT 59.324 43.478 15.98 0.00 46.31 4.49
3401 3465 1.004044 CCCTCATCCAAGAGCACAACT 59.996 52.381 0.00 0.00 34.26 3.16
4047 4116 0.659957 CAGCTAATTTCAGAGCCGGC 59.340 55.000 21.89 21.89 39.65 6.13
4553 4799 7.315066 ACAGGGAACACCATTAAATCAAAAT 57.685 32.000 0.00 0.00 43.89 1.82
4796 5085 1.133915 TGTGTCCCAACTTCCAAGACC 60.134 52.381 0.00 0.00 0.00 3.85
4852 5142 1.802960 CACTCTGCACATGTGAGAACC 59.197 52.381 29.80 11.54 33.95 3.62
4880 5170 5.627135 TCATAAGGAGAACGGAAAAAGGTT 58.373 37.500 0.00 0.00 0.00 3.50
4891 5181 6.183360 GCAACCTAACACATCATAAGGAGAAC 60.183 42.308 0.00 0.00 0.00 3.01
5158 5448 1.202486 GCCGACGTGAGGAATATGGAA 60.202 52.381 10.56 0.00 0.00 3.53
5485 5775 7.591426 GCTGACTGTTTATAAGGTGTTCAAAAG 59.409 37.037 0.00 0.00 0.00 2.27
5504 5794 1.159713 TGTTGCGGAAGTGCTGACTG 61.160 55.000 0.00 0.00 35.36 3.51
5518 5808 9.956797 CATAAATACTAACAAAATGCTTGTTGC 57.043 29.630 11.62 0.00 42.05 4.17
5544 5834 9.750125 AATGAACTCTTGTTTTAATTTCTGGAC 57.250 29.630 0.00 0.00 36.39 4.02
5582 5872 3.451178 TGTGGAAGCTATACTCCCAGTTC 59.549 47.826 0.00 0.00 0.00 3.01
5634 6071 8.686334 TCAATAAAATCAATAAGGCCAGAAGAC 58.314 33.333 5.01 0.00 0.00 3.01
5648 6085 9.755804 TGCAAGTACACAAATCAATAAAATCAA 57.244 25.926 0.00 0.00 0.00 2.57
5649 6086 9.926158 ATGCAAGTACACAAATCAATAAAATCA 57.074 25.926 0.00 0.00 0.00 2.57
5689 6126 6.094048 ACATAAGTACAACTGCATCCATTCAC 59.906 38.462 0.00 0.00 0.00 3.18
5799 6237 1.098050 CAATTCCCAGGAAAGAGCCG 58.902 55.000 2.65 0.00 37.69 5.52
5901 6339 1.395954 CCTGCTGTGAATGATGACACG 59.604 52.381 0.00 0.00 39.52 4.49
5937 6375 2.857483 TCGCAAGGGTTCTCATCAAAA 58.143 42.857 0.00 0.00 38.47 2.44
6080 6518 1.074889 GAAGAAGCCAGGGGTTAACCA 59.925 52.381 25.71 0.00 42.91 3.67
6240 6678 3.827722 CCCCACAAACTTAAGAACCTCA 58.172 45.455 10.09 0.00 0.00 3.86
6339 6777 3.834799 GTCTACTCCCCCGTGGCG 61.835 72.222 0.00 0.00 0.00 5.69
6418 6856 7.584532 AGTTCTATAGAGTAGCCTAACTTCCA 58.415 38.462 2.02 0.00 0.00 3.53
6546 6984 8.692710 TCGTGGATATAAGTGAAAGATTACTGT 58.307 33.333 0.00 0.00 0.00 3.55
6557 6996 8.367911 AGCAGAATAATTCGTGGATATAAGTGA 58.632 33.333 0.00 0.00 34.02 3.41
6570 7009 5.413969 TGCATTCAGAGCAGAATAATTCG 57.586 39.130 0.00 0.00 36.13 3.34
6709 7175 6.361433 TCTCCTGATTTCACAAAAGTAACCA 58.639 36.000 0.00 0.00 0.00 3.67
6741 7207 6.608808 AGTTATGTACCGTACCAATAAGGAGT 59.391 38.462 6.23 0.00 41.22 3.85
6791 7259 7.254852 ACATGACAAACGATGTACAAACTTTT 58.745 30.769 0.00 1.09 44.12 2.27
6835 7303 6.044046 AGCACGTGTATATTCGGTCAATTTA 58.956 36.000 18.38 0.00 0.00 1.40
6844 7312 5.163992 ACAAACTGAAGCACGTGTATATTCG 60.164 40.000 18.38 13.52 0.00 3.34
6845 7313 6.165659 ACAAACTGAAGCACGTGTATATTC 57.834 37.500 18.38 15.71 0.00 1.75
6846 7314 6.647481 TGTACAAACTGAAGCACGTGTATATT 59.353 34.615 18.38 7.26 0.00 1.28
6854 7322 2.029970 ACGTTGTACAAACTGAAGCACG 59.970 45.455 10.51 9.52 0.00 5.34
6886 7354 0.961753 GGTCAGGTGAAGCCAAAAGG 59.038 55.000 0.00 0.00 40.61 3.11
6923 7391 2.541999 CCTGAGCGGAGTATTCTCGAAC 60.542 54.545 0.00 0.00 41.26 3.95
7018 7486 2.811317 CGCCTGAGGTTCAGCGTC 60.811 66.667 0.00 0.00 42.98 5.19
7031 7499 3.284449 GTGCCCGTGAAAACGCCT 61.284 61.111 0.00 0.00 0.00 5.52
7295 7763 2.202987 GAGATGGTGAGCCTGGCG 60.203 66.667 13.96 0.00 35.27 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.