Multiple sequence alignment - TraesCS4D01G200700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G200700 chr4D 100.000 3028 0 0 1 3028 348034522 348037549 0.000000e+00 5592.0
1 TraesCS4D01G200700 chr4D 100.000 148 0 0 3419 3566 348037940 348038087 1.260000e-69 274.0
2 TraesCS4D01G200700 chr4D 94.000 50 3 0 1741 1790 348304731 348304780 3.820000e-10 76.8
3 TraesCS4D01G200700 chr4B 90.787 2529 114 55 550 3024 428190450 428192913 0.000000e+00 3269.0
4 TraesCS4D01G200700 chr4B 94.595 148 3 5 3419 3566 428193621 428193763 1.290000e-54 224.0
5 TraesCS4D01G200700 chr4B 94.000 50 3 0 1741 1790 428463499 428463548 3.820000e-10 76.8
6 TraesCS4D01G200700 chr4A 93.609 1283 48 17 1681 2941 117704891 117703621 0.000000e+00 1884.0
7 TraesCS4D01G200700 chr4A 89.841 502 28 12 1130 1626 117705391 117704908 1.090000e-174 623.0
8 TraesCS4D01G200700 chr4A 90.515 485 14 10 527 992 117705916 117705445 2.350000e-171 612.0
9 TraesCS4D01G200700 chr4A 95.175 228 7 2 2789 3015 117703620 117703396 1.220000e-94 357.0
10 TraesCS4D01G200700 chr4A 100.000 56 0 0 3511 3566 117702992 117702937 1.750000e-18 104.0
11 TraesCS4D01G200700 chr5D 91.498 494 39 3 1 491 397925776 397925283 0.000000e+00 676.0
12 TraesCS4D01G200700 chr5D 91.331 496 37 5 1 491 422434067 422433573 0.000000e+00 673.0
13 TraesCS4D01G200700 chr5D 90.465 409 33 6 90 493 309861554 309861147 5.240000e-148 534.0
14 TraesCS4D01G200700 chr6D 90.909 495 39 6 1 491 5613904 5613412 0.000000e+00 660.0
15 TraesCS4D01G200700 chr6D 90.656 503 37 9 1 497 78787211 78786713 0.000000e+00 660.0
16 TraesCS4D01G200700 chr6B 90.707 495 42 4 1 492 581939845 581940338 0.000000e+00 656.0
17 TraesCS4D01G200700 chr7D 90.581 499 36 5 1 491 152100057 152100552 0.000000e+00 651.0
18 TraesCS4D01G200700 chrUn 88.306 496 49 7 1 491 287259117 287258626 1.430000e-163 586.0
19 TraesCS4D01G200700 chr1D 93.369 377 23 2 117 491 10281611 10281235 1.120000e-154 556.0
20 TraesCS4D01G200700 chr7B 97.917 48 1 0 1833 1880 609842575 609842528 2.280000e-12 84.2
21 TraesCS4D01G200700 chr7B 97.561 41 1 0 1907 1947 609842528 609842488 1.780000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G200700 chr4D 348034522 348038087 3565 False 2933.0 5592 100.000 1 3566 2 chr4D.!!$F2 3565
1 TraesCS4D01G200700 chr4B 428190450 428193763 3313 False 1746.5 3269 92.691 550 3566 2 chr4B.!!$F2 3016
2 TraesCS4D01G200700 chr4A 117702937 117705916 2979 True 716.0 1884 93.828 527 3566 5 chr4A.!!$R1 3039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.022106 CGTCATCGTCGCGTTCTTTC 59.978 55.0 5.77 0.0 0.00 2.62 F
256 257 0.031043 TCGTCGCGTTCTTTCTTGGA 59.969 50.0 5.77 0.0 0.00 3.53 F
441 442 0.036388 CAGCACCTATCGTGGGTTGT 60.036 55.0 0.00 0.0 43.24 3.32 F
1652 1717 0.038159 CGACCGAATGCCCTCCTATC 60.038 60.0 0.00 0.0 0.00 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 1698 0.038159 GATAGGAGGGCATTCGGTCG 60.038 60.0 0.0 0.0 0.00 4.79 R
1680 1750 0.041238 TGGAGTGGAGGGAAGACGAT 59.959 55.0 0.0 0.0 0.00 3.73 R
1681 1751 0.041238 ATGGAGTGGAGGGAAGACGA 59.959 55.0 0.0 0.0 0.00 4.20 R
2576 2665 0.108329 ACCGTTATCCTTGGCGACAG 60.108 55.0 0.0 0.0 44.54 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.734723 CGTGGTGAGACAGCGTGG 60.735 66.667 0.00 0.00 34.27 4.94
18 19 2.357517 GTGGTGAGACAGCGTGGG 60.358 66.667 0.00 0.00 34.27 4.61
19 20 2.523168 TGGTGAGACAGCGTGGGA 60.523 61.111 0.00 0.00 34.27 4.37
20 21 2.137528 TGGTGAGACAGCGTGGGAA 61.138 57.895 0.00 0.00 34.27 3.97
21 22 1.070786 GGTGAGACAGCGTGGGAAA 59.929 57.895 0.00 0.00 0.00 3.13
22 23 1.228657 GGTGAGACAGCGTGGGAAAC 61.229 60.000 0.00 0.00 0.00 2.78
23 24 0.249911 GTGAGACAGCGTGGGAAACT 60.250 55.000 0.00 0.00 0.00 2.66
24 25 0.033504 TGAGACAGCGTGGGAAACTC 59.966 55.000 0.00 0.00 0.00 3.01
25 26 0.033504 GAGACAGCGTGGGAAACTCA 59.966 55.000 0.00 0.00 0.00 3.41
26 27 0.468226 AGACAGCGTGGGAAACTCAA 59.532 50.000 0.00 0.00 0.00 3.02
27 28 0.868406 GACAGCGTGGGAAACTCAAG 59.132 55.000 0.00 0.00 0.00 3.02
28 29 0.468226 ACAGCGTGGGAAACTCAAGA 59.532 50.000 0.00 0.00 0.00 3.02
29 30 0.868406 CAGCGTGGGAAACTCAAGAC 59.132 55.000 0.00 0.00 0.00 3.01
30 31 0.250338 AGCGTGGGAAACTCAAGACC 60.250 55.000 0.00 0.00 0.00 3.85
31 32 1.566018 GCGTGGGAAACTCAAGACCG 61.566 60.000 0.00 0.00 0.00 4.79
32 33 0.249741 CGTGGGAAACTCAAGACCGT 60.250 55.000 0.00 0.00 0.00 4.83
33 34 1.000060 CGTGGGAAACTCAAGACCGTA 60.000 52.381 0.00 0.00 0.00 4.02
34 35 2.353406 CGTGGGAAACTCAAGACCGTAT 60.353 50.000 0.00 0.00 0.00 3.06
35 36 3.671716 GTGGGAAACTCAAGACCGTATT 58.328 45.455 0.00 0.00 0.00 1.89
36 37 3.435671 GTGGGAAACTCAAGACCGTATTG 59.564 47.826 0.00 0.00 0.00 1.90
37 38 3.007635 GGGAAACTCAAGACCGTATTGG 58.992 50.000 6.07 0.40 46.41 3.16
38 39 2.418976 GGAAACTCAAGACCGTATTGGC 59.581 50.000 6.07 0.00 43.94 4.52
39 40 1.722011 AACTCAAGACCGTATTGGCG 58.278 50.000 6.07 1.25 43.94 5.69
40 41 0.739813 ACTCAAGACCGTATTGGCGC 60.740 55.000 0.00 0.00 43.94 6.53
41 42 0.739462 CTCAAGACCGTATTGGCGCA 60.739 55.000 10.83 0.00 43.94 6.09
42 43 0.739462 TCAAGACCGTATTGGCGCAG 60.739 55.000 10.83 0.00 43.94 5.18
43 44 1.449601 AAGACCGTATTGGCGCAGG 60.450 57.895 10.83 4.68 43.94 4.85
44 45 2.869503 AAGACCGTATTGGCGCAGGG 62.870 60.000 10.83 6.15 43.94 4.45
45 46 3.675619 GACCGTATTGGCGCAGGGT 62.676 63.158 10.83 9.93 43.94 4.34
46 47 3.202001 CCGTATTGGCGCAGGGTG 61.202 66.667 10.83 0.00 0.00 4.61
47 48 2.125310 CGTATTGGCGCAGGGTGA 60.125 61.111 10.83 0.00 0.00 4.02
48 49 1.523711 CGTATTGGCGCAGGGTGAT 60.524 57.895 10.83 0.00 0.00 3.06
49 50 1.775039 CGTATTGGCGCAGGGTGATG 61.775 60.000 10.83 0.00 0.00 3.07
50 51 0.463654 GTATTGGCGCAGGGTGATGA 60.464 55.000 10.83 0.00 0.00 2.92
51 52 0.463654 TATTGGCGCAGGGTGATGAC 60.464 55.000 10.83 0.00 0.00 3.06
52 53 3.792588 TATTGGCGCAGGGTGATGACC 62.793 57.143 10.83 0.00 42.27 4.02
55 56 4.082523 CGCAGGGTGATGACCGGT 62.083 66.667 6.92 6.92 44.23 5.28
56 57 2.717044 CGCAGGGTGATGACCGGTA 61.717 63.158 7.34 0.00 44.23 4.02
57 58 1.830145 GCAGGGTGATGACCGGTAT 59.170 57.895 7.34 0.93 44.23 2.73
58 59 0.532862 GCAGGGTGATGACCGGTATG 60.533 60.000 7.34 0.00 44.23 2.39
59 60 1.119684 CAGGGTGATGACCGGTATGA 58.880 55.000 7.34 0.00 44.23 2.15
60 61 1.694150 CAGGGTGATGACCGGTATGAT 59.306 52.381 7.34 0.00 44.23 2.45
61 62 1.694150 AGGGTGATGACCGGTATGATG 59.306 52.381 7.34 0.00 44.23 3.07
62 63 1.270839 GGGTGATGACCGGTATGATGG 60.271 57.143 7.34 0.00 44.23 3.51
63 64 1.512926 GTGATGACCGGTATGATGGC 58.487 55.000 7.34 0.00 0.00 4.40
64 65 0.033366 TGATGACCGGTATGATGGCG 59.967 55.000 7.34 0.00 0.00 5.69
65 66 0.033504 GATGACCGGTATGATGGCGT 59.966 55.000 7.34 0.00 0.00 5.68
66 67 0.249868 ATGACCGGTATGATGGCGTG 60.250 55.000 7.34 0.00 0.00 5.34
67 68 2.203015 ACCGGTATGATGGCGTGC 60.203 61.111 4.49 0.00 0.00 5.34
68 69 2.108976 CCGGTATGATGGCGTGCT 59.891 61.111 0.00 0.00 0.00 4.40
69 70 1.956170 CCGGTATGATGGCGTGCTC 60.956 63.158 0.00 0.00 0.00 4.26
70 71 1.956170 CGGTATGATGGCGTGCTCC 60.956 63.158 0.00 0.00 0.00 4.70
71 72 1.956170 GGTATGATGGCGTGCTCCG 60.956 63.158 0.00 0.00 40.40 4.63
72 73 1.956170 GTATGATGGCGTGCTCCGG 60.956 63.158 0.00 0.00 36.94 5.14
73 74 2.131067 TATGATGGCGTGCTCCGGA 61.131 57.895 2.93 2.93 36.94 5.14
74 75 2.087462 TATGATGGCGTGCTCCGGAG 62.087 60.000 27.83 27.83 36.94 4.63
88 89 4.530857 GGAGCGTCCGGGGTGATG 62.531 72.222 0.00 0.00 0.00 3.07
89 90 4.530857 GAGCGTCCGGGGTGATGG 62.531 72.222 0.00 0.00 0.00 3.51
91 92 4.404098 GCGTCCGGGGTGATGGTT 62.404 66.667 0.00 0.00 0.00 3.67
92 93 2.435938 CGTCCGGGGTGATGGTTG 60.436 66.667 0.00 0.00 0.00 3.77
93 94 2.045340 GTCCGGGGTGATGGTTGG 60.045 66.667 0.00 0.00 0.00 3.77
94 95 3.334891 TCCGGGGTGATGGTTGGG 61.335 66.667 0.00 0.00 0.00 4.12
95 96 3.334891 CCGGGGTGATGGTTGGGA 61.335 66.667 0.00 0.00 0.00 4.37
96 97 2.689691 CCGGGGTGATGGTTGGGAT 61.690 63.158 0.00 0.00 0.00 3.85
97 98 1.152963 CGGGGTGATGGTTGGGATC 60.153 63.158 0.00 0.00 0.00 3.36
98 99 1.152963 GGGGTGATGGTTGGGATCG 60.153 63.158 0.00 0.00 0.00 3.69
99 100 1.152963 GGGTGATGGTTGGGATCGG 60.153 63.158 0.00 0.00 0.00 4.18
100 101 1.632018 GGGTGATGGTTGGGATCGGA 61.632 60.000 0.00 0.00 0.00 4.55
101 102 0.179045 GGTGATGGTTGGGATCGGAG 60.179 60.000 0.00 0.00 0.00 4.63
102 103 0.179045 GTGATGGTTGGGATCGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
103 104 0.326143 TGATGGTTGGGATCGGAGGA 60.326 55.000 0.00 0.00 0.00 3.71
104 105 0.837272 GATGGTTGGGATCGGAGGAA 59.163 55.000 0.00 0.00 0.00 3.36
105 106 1.421646 GATGGTTGGGATCGGAGGAAT 59.578 52.381 0.00 0.00 0.00 3.01
106 107 0.837272 TGGTTGGGATCGGAGGAATC 59.163 55.000 0.00 0.00 0.00 2.52
107 108 0.108774 GGTTGGGATCGGAGGAATCC 59.891 60.000 0.00 0.00 0.00 3.01
111 112 2.841595 GGATCGGAGGAATCCCTGT 58.158 57.895 0.00 0.00 44.53 4.00
112 113 0.682292 GGATCGGAGGAATCCCTGTC 59.318 60.000 0.00 0.00 44.53 3.51
113 114 0.315568 GATCGGAGGAATCCCTGTCG 59.684 60.000 0.00 0.00 44.53 4.35
114 115 1.115930 ATCGGAGGAATCCCTGTCGG 61.116 60.000 0.00 0.00 44.53 4.79
115 116 2.506472 GGAGGAATCCCTGTCGGC 59.494 66.667 0.00 0.00 44.53 5.54
116 117 2.506472 GAGGAATCCCTGTCGGCC 59.494 66.667 0.00 0.00 44.53 6.13
117 118 2.041265 AGGAATCCCTGTCGGCCT 59.959 61.111 0.00 0.00 42.42 5.19
118 119 2.190578 GGAATCCCTGTCGGCCTG 59.809 66.667 0.00 0.00 0.00 4.85
119 120 2.190578 GAATCCCTGTCGGCCTGG 59.809 66.667 0.00 0.00 0.00 4.45
120 121 4.115199 AATCCCTGTCGGCCTGGC 62.115 66.667 11.05 11.05 0.00 4.85
131 132 4.899239 GCCTGGCCGACTCCGATG 62.899 72.222 7.66 0.00 38.22 3.84
132 133 4.899239 CCTGGCCGACTCCGATGC 62.899 72.222 0.00 0.00 38.22 3.91
164 165 4.699522 GTGCCGCCGAACCTTCCT 62.700 66.667 0.00 0.00 0.00 3.36
165 166 4.697756 TGCCGCCGAACCTTCCTG 62.698 66.667 0.00 0.00 0.00 3.86
167 168 3.702048 CCGCCGAACCTTCCTGGA 61.702 66.667 0.00 0.00 39.71 3.86
168 169 2.125512 CGCCGAACCTTCCTGGAG 60.126 66.667 0.00 0.00 39.71 3.86
169 170 2.269241 GCCGAACCTTCCTGGAGG 59.731 66.667 9.73 9.73 42.75 4.30
170 171 2.990479 CCGAACCTTCCTGGAGGG 59.010 66.667 22.26 22.26 41.31 4.30
171 172 2.269241 CGAACCTTCCTGGAGGGC 59.731 66.667 23.61 8.43 41.31 5.19
172 173 2.269241 GAACCTTCCTGGAGGGCG 59.731 66.667 23.61 2.74 41.31 6.13
173 174 2.529389 AACCTTCCTGGAGGGCGT 60.529 61.111 23.61 10.07 41.31 5.68
174 175 2.125766 GAACCTTCCTGGAGGGCGTT 62.126 60.000 23.61 12.13 41.31 4.84
175 176 2.045926 CCTTCCTGGAGGGCGTTG 60.046 66.667 12.36 0.00 38.35 4.10
176 177 2.045926 CTTCCTGGAGGGCGTTGG 60.046 66.667 0.00 0.00 35.41 3.77
177 178 3.628646 CTTCCTGGAGGGCGTTGGG 62.629 68.421 0.00 0.00 35.41 4.12
178 179 4.974438 TCCTGGAGGGCGTTGGGT 62.974 66.667 0.00 0.00 35.41 4.51
179 180 4.722700 CCTGGAGGGCGTTGGGTG 62.723 72.222 0.00 0.00 0.00 4.61
180 181 3.953775 CTGGAGGGCGTTGGGTGT 61.954 66.667 0.00 0.00 0.00 4.16
181 182 3.901797 CTGGAGGGCGTTGGGTGTC 62.902 68.421 0.00 0.00 0.00 3.67
182 183 3.948719 GGAGGGCGTTGGGTGTCA 61.949 66.667 0.00 0.00 0.00 3.58
183 184 2.668550 GAGGGCGTTGGGTGTCAC 60.669 66.667 0.00 0.00 0.00 3.67
184 185 4.265056 AGGGCGTTGGGTGTCACC 62.265 66.667 14.13 14.13 37.60 4.02
195 196 2.186532 GGTGTCACCCTTCCTTTCTC 57.813 55.000 11.30 0.00 30.04 2.87
196 197 1.271434 GGTGTCACCCTTCCTTTCTCC 60.271 57.143 11.30 0.00 30.04 3.71
197 198 1.700186 GTGTCACCCTTCCTTTCTCCT 59.300 52.381 0.00 0.00 0.00 3.69
198 199 2.106684 GTGTCACCCTTCCTTTCTCCTT 59.893 50.000 0.00 0.00 0.00 3.36
199 200 2.106511 TGTCACCCTTCCTTTCTCCTTG 59.893 50.000 0.00 0.00 0.00 3.61
200 201 1.073923 TCACCCTTCCTTTCTCCTTGC 59.926 52.381 0.00 0.00 0.00 4.01
201 202 0.405973 ACCCTTCCTTTCTCCTTGCC 59.594 55.000 0.00 0.00 0.00 4.52
202 203 0.678048 CCCTTCCTTTCTCCTTGCCG 60.678 60.000 0.00 0.00 0.00 5.69
203 204 0.036875 CCTTCCTTTCTCCTTGCCGT 59.963 55.000 0.00 0.00 0.00 5.68
204 205 1.160137 CTTCCTTTCTCCTTGCCGTG 58.840 55.000 0.00 0.00 0.00 4.94
205 206 0.472471 TTCCTTTCTCCTTGCCGTGT 59.528 50.000 0.00 0.00 0.00 4.49
206 207 0.250295 TCCTTTCTCCTTGCCGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
207 208 1.576421 CTTTCTCCTTGCCGTGTGC 59.424 57.895 0.00 0.00 41.77 4.57
208 209 1.856265 CTTTCTCCTTGCCGTGTGCC 61.856 60.000 0.00 0.00 40.16 5.01
209 210 4.680237 TCTCCTTGCCGTGTGCCG 62.680 66.667 0.00 0.00 40.16 5.69
229 230 2.653115 GGAAACCCTTGCAGCAGC 59.347 61.111 0.00 0.00 42.57 5.25
230 231 2.256461 GAAACCCTTGCAGCAGCG 59.744 61.111 0.00 0.00 46.23 5.18
231 232 2.519302 AAACCCTTGCAGCAGCGT 60.519 55.556 0.00 0.00 46.23 5.07
232 233 2.463675 GAAACCCTTGCAGCAGCGTC 62.464 60.000 0.00 0.00 46.23 5.19
235 236 3.782244 CCTTGCAGCAGCGTCGTC 61.782 66.667 0.00 0.00 46.23 4.20
236 237 3.037833 CTTGCAGCAGCGTCGTCA 61.038 61.111 0.00 0.00 46.23 4.35
237 238 2.357396 TTGCAGCAGCGTCGTCAT 60.357 55.556 0.00 0.00 46.23 3.06
238 239 2.288926 CTTGCAGCAGCGTCGTCATC 62.289 60.000 0.00 0.00 46.23 2.92
239 240 3.906649 GCAGCAGCGTCGTCATCG 61.907 66.667 0.00 0.00 38.55 3.84
240 241 2.504899 CAGCAGCGTCGTCATCGT 60.505 61.111 0.00 0.00 38.33 3.73
241 242 2.202492 AGCAGCGTCGTCATCGTC 60.202 61.111 0.00 0.00 38.33 4.20
242 243 3.598562 GCAGCGTCGTCATCGTCG 61.599 66.667 0.00 3.42 46.99 5.12
246 247 2.868331 CGTCGTCATCGTCGCGTT 60.868 61.111 5.77 0.00 40.72 4.84
247 248 2.821843 CGTCGTCATCGTCGCGTTC 61.822 63.158 5.77 0.00 40.72 3.95
248 249 1.511464 GTCGTCATCGTCGCGTTCT 60.511 57.895 5.77 0.00 38.33 3.01
249 250 1.063951 GTCGTCATCGTCGCGTTCTT 61.064 55.000 5.77 0.00 38.33 2.52
250 251 0.386352 TCGTCATCGTCGCGTTCTTT 60.386 50.000 5.77 0.00 38.33 2.52
251 252 0.022106 CGTCATCGTCGCGTTCTTTC 59.978 55.000 5.77 0.00 0.00 2.62
252 253 1.337821 GTCATCGTCGCGTTCTTTCT 58.662 50.000 5.77 0.00 0.00 2.52
253 254 1.719780 GTCATCGTCGCGTTCTTTCTT 59.280 47.619 5.77 0.00 0.00 2.52
254 255 1.719246 TCATCGTCGCGTTCTTTCTTG 59.281 47.619 5.77 0.00 0.00 3.02
255 256 1.068474 ATCGTCGCGTTCTTTCTTGG 58.932 50.000 5.77 0.00 0.00 3.61
256 257 0.031043 TCGTCGCGTTCTTTCTTGGA 59.969 50.000 5.77 0.00 0.00 3.53
257 258 0.435008 CGTCGCGTTCTTTCTTGGAG 59.565 55.000 5.77 0.00 0.00 3.86
258 259 0.790814 GTCGCGTTCTTTCTTGGAGG 59.209 55.000 5.77 0.00 0.00 4.30
259 260 0.391597 TCGCGTTCTTTCTTGGAGGT 59.608 50.000 5.77 0.00 0.00 3.85
260 261 0.512952 CGCGTTCTTTCTTGGAGGTG 59.487 55.000 0.00 0.00 0.00 4.00
261 262 1.594331 GCGTTCTTTCTTGGAGGTGT 58.406 50.000 0.00 0.00 0.00 4.16
262 263 1.947456 GCGTTCTTTCTTGGAGGTGTT 59.053 47.619 0.00 0.00 0.00 3.32
263 264 2.287009 GCGTTCTTTCTTGGAGGTGTTG 60.287 50.000 0.00 0.00 0.00 3.33
264 265 2.943033 CGTTCTTTCTTGGAGGTGTTGT 59.057 45.455 0.00 0.00 0.00 3.32
265 266 3.242739 CGTTCTTTCTTGGAGGTGTTGTG 60.243 47.826 0.00 0.00 0.00 3.33
266 267 3.644966 TCTTTCTTGGAGGTGTTGTGT 57.355 42.857 0.00 0.00 0.00 3.72
267 268 3.278574 TCTTTCTTGGAGGTGTTGTGTG 58.721 45.455 0.00 0.00 0.00 3.82
268 269 2.051334 TTCTTGGAGGTGTTGTGTGG 57.949 50.000 0.00 0.00 0.00 4.17
269 270 0.916086 TCTTGGAGGTGTTGTGTGGT 59.084 50.000 0.00 0.00 0.00 4.16
270 271 2.120312 TCTTGGAGGTGTTGTGTGGTA 58.880 47.619 0.00 0.00 0.00 3.25
271 272 2.158871 TCTTGGAGGTGTTGTGTGGTAC 60.159 50.000 0.00 0.00 0.00 3.34
272 273 0.470766 TGGAGGTGTTGTGTGGTACC 59.529 55.000 4.43 4.43 0.00 3.34
273 274 0.601841 GGAGGTGTTGTGTGGTACCG 60.602 60.000 7.57 0.00 38.24 4.02
274 275 0.390124 GAGGTGTTGTGTGGTACCGA 59.610 55.000 7.57 0.00 38.24 4.69
275 276 0.105408 AGGTGTTGTGTGGTACCGAC 59.895 55.000 7.57 7.17 38.24 4.79
276 277 1.216941 GGTGTTGTGTGGTACCGACG 61.217 60.000 7.57 0.00 0.00 5.12
277 278 1.592131 TGTTGTGTGGTACCGACGC 60.592 57.895 7.57 13.22 0.00 5.19
278 279 1.300388 GTTGTGTGGTACCGACGCT 60.300 57.895 21.01 0.00 0.00 5.07
279 280 0.877213 GTTGTGTGGTACCGACGCTT 60.877 55.000 21.01 0.00 0.00 4.68
280 281 0.598158 TTGTGTGGTACCGACGCTTC 60.598 55.000 21.01 9.13 0.00 3.86
281 282 2.084681 GTGTGGTACCGACGCTTCG 61.085 63.158 7.57 5.49 45.44 3.79
289 290 3.796443 CGACGCTTCGGACTCGGA 61.796 66.667 4.41 0.00 41.89 4.55
290 291 2.100603 GACGCTTCGGACTCGGAG 59.899 66.667 2.83 2.83 44.57 4.63
294 295 4.485554 CTTCGGACTCGGAGCTTG 57.514 61.111 4.58 0.00 34.96 4.01
295 296 1.153745 CTTCGGACTCGGAGCTTGG 60.154 63.158 4.58 0.00 34.96 3.61
296 297 1.878656 CTTCGGACTCGGAGCTTGGT 61.879 60.000 4.58 0.00 34.96 3.67
297 298 2.125912 CGGACTCGGAGCTTGGTG 60.126 66.667 4.58 0.00 0.00 4.17
298 299 2.266055 GGACTCGGAGCTTGGTGG 59.734 66.667 4.58 0.00 0.00 4.61
299 300 2.283529 GGACTCGGAGCTTGGTGGA 61.284 63.158 4.58 0.00 0.00 4.02
300 301 1.671742 GACTCGGAGCTTGGTGGAA 59.328 57.895 4.58 0.00 0.00 3.53
301 302 0.390472 GACTCGGAGCTTGGTGGAAG 60.390 60.000 4.58 0.00 34.41 3.46
302 303 0.832135 ACTCGGAGCTTGGTGGAAGA 60.832 55.000 4.58 0.00 32.82 2.87
303 304 0.539051 CTCGGAGCTTGGTGGAAGAT 59.461 55.000 0.00 0.00 32.82 2.40
304 305 0.537188 TCGGAGCTTGGTGGAAGATC 59.463 55.000 0.00 0.00 44.96 2.75
306 307 3.485764 GAGCTTGGTGGAAGATCCC 57.514 57.895 0.00 0.00 40.63 3.85
307 308 0.462759 GAGCTTGGTGGAAGATCCCG 60.463 60.000 0.00 0.00 40.63 5.14
308 309 1.452108 GCTTGGTGGAAGATCCCGG 60.452 63.158 0.00 0.00 35.03 5.73
309 310 1.991230 CTTGGTGGAAGATCCCGGT 59.009 57.895 0.00 0.00 35.03 5.28
310 311 0.392998 CTTGGTGGAAGATCCCGGTG 60.393 60.000 0.00 0.00 35.03 4.94
311 312 1.847798 TTGGTGGAAGATCCCGGTGG 61.848 60.000 0.00 0.00 35.03 4.61
312 313 2.590092 GTGGAAGATCCCGGTGGG 59.410 66.667 0.00 0.00 46.11 4.61
324 325 4.148825 GGTGGGAGCAGCGATCGT 62.149 66.667 17.81 0.26 0.00 3.73
325 326 2.887568 GTGGGAGCAGCGATCGTG 60.888 66.667 17.81 14.22 0.00 4.35
326 327 3.068064 TGGGAGCAGCGATCGTGA 61.068 61.111 17.81 0.00 0.00 4.35
327 328 2.419198 GGGAGCAGCGATCGTGAT 59.581 61.111 17.81 12.25 0.00 3.06
328 329 1.953138 GGGAGCAGCGATCGTGATG 60.953 63.158 17.81 13.96 0.00 3.07
329 330 1.066422 GGAGCAGCGATCGTGATGA 59.934 57.895 17.81 0.00 0.00 2.92
330 331 0.319383 GGAGCAGCGATCGTGATGAT 60.319 55.000 17.81 11.97 41.06 2.45
331 332 1.495878 GAGCAGCGATCGTGATGATT 58.504 50.000 17.81 5.77 37.47 2.57
332 333 1.455030 GAGCAGCGATCGTGATGATTC 59.545 52.381 17.81 10.49 37.47 2.52
333 334 1.068281 AGCAGCGATCGTGATGATTCT 59.932 47.619 17.81 0.00 37.47 2.40
334 335 1.863454 GCAGCGATCGTGATGATTCTT 59.137 47.619 17.81 0.00 37.47 2.52
335 336 2.097007 GCAGCGATCGTGATGATTCTTC 60.097 50.000 17.81 0.00 37.47 2.87
336 337 2.152678 CAGCGATCGTGATGATTCTTCG 59.847 50.000 17.81 0.00 37.47 3.79
337 338 2.120232 GCGATCGTGATGATTCTTCGT 58.880 47.619 17.81 0.00 37.47 3.85
338 339 2.535984 GCGATCGTGATGATTCTTCGTT 59.464 45.455 17.81 0.00 37.47 3.85
339 340 3.000322 GCGATCGTGATGATTCTTCGTTT 60.000 43.478 17.81 0.00 37.47 3.60
340 341 4.492570 GCGATCGTGATGATTCTTCGTTTT 60.493 41.667 17.81 0.00 37.47 2.43
341 342 5.550981 CGATCGTGATGATTCTTCGTTTTT 58.449 37.500 7.03 0.00 37.47 1.94
342 343 5.445955 CGATCGTGATGATTCTTCGTTTTTG 59.554 40.000 7.03 0.00 37.47 2.44
343 344 5.666969 TCGTGATGATTCTTCGTTTTTGT 57.333 34.783 0.00 0.00 0.00 2.83
344 345 6.055231 TCGTGATGATTCTTCGTTTTTGTT 57.945 33.333 0.00 0.00 0.00 2.83
345 346 5.906838 TCGTGATGATTCTTCGTTTTTGTTG 59.093 36.000 0.00 0.00 0.00 3.33
346 347 5.906838 CGTGATGATTCTTCGTTTTTGTTGA 59.093 36.000 0.00 0.00 0.00 3.18
347 348 6.578545 CGTGATGATTCTTCGTTTTTGTTGAT 59.421 34.615 0.00 0.00 0.00 2.57
348 349 7.201182 CGTGATGATTCTTCGTTTTTGTTGATC 60.201 37.037 0.00 0.00 0.00 2.92
349 350 7.061094 GTGATGATTCTTCGTTTTTGTTGATCC 59.939 37.037 0.00 0.00 0.00 3.36
350 351 5.448438 TGATTCTTCGTTTTTGTTGATCCG 58.552 37.500 0.00 0.00 0.00 4.18
351 352 4.886247 TTCTTCGTTTTTGTTGATCCGT 57.114 36.364 0.00 0.00 0.00 4.69
352 353 4.461992 TCTTCGTTTTTGTTGATCCGTC 57.538 40.909 0.00 0.00 0.00 4.79
353 354 2.934107 TCGTTTTTGTTGATCCGTCG 57.066 45.000 0.00 0.00 0.00 5.12
354 355 2.203401 TCGTTTTTGTTGATCCGTCGT 58.797 42.857 0.00 0.00 0.00 4.34
355 356 2.608546 TCGTTTTTGTTGATCCGTCGTT 59.391 40.909 0.00 0.00 0.00 3.85
356 357 2.711964 CGTTTTTGTTGATCCGTCGTTG 59.288 45.455 0.00 0.00 0.00 4.10
357 358 3.687200 GTTTTTGTTGATCCGTCGTTGT 58.313 40.909 0.00 0.00 0.00 3.32
358 359 3.595709 TTTTGTTGATCCGTCGTTGTC 57.404 42.857 0.00 0.00 0.00 3.18
359 360 1.133407 TTGTTGATCCGTCGTTGTCG 58.867 50.000 0.00 0.00 38.55 4.35
361 362 1.735198 TTGATCCGTCGTTGTCGGC 60.735 57.895 0.00 0.00 46.49 5.54
362 363 2.126228 GATCCGTCGTTGTCGGCA 60.126 61.111 0.00 0.00 46.49 5.69
363 364 1.518572 GATCCGTCGTTGTCGGCAT 60.519 57.895 0.00 0.00 46.49 4.40
364 365 1.079405 ATCCGTCGTTGTCGGCATT 60.079 52.632 0.00 0.00 46.49 3.56
365 366 0.672401 ATCCGTCGTTGTCGGCATTT 60.672 50.000 0.00 0.00 46.49 2.32
366 367 1.154488 CCGTCGTTGTCGGCATTTG 60.154 57.895 0.00 0.00 42.21 2.32
367 368 1.154488 CGTCGTTGTCGGCATTTGG 60.154 57.895 0.00 0.00 42.21 3.28
368 369 1.837538 CGTCGTTGTCGGCATTTGGT 61.838 55.000 0.00 0.00 42.21 3.67
369 370 0.309612 GTCGTTGTCGGCATTTGGTT 59.690 50.000 0.00 0.00 41.67 3.67
370 371 1.025812 TCGTTGTCGGCATTTGGTTT 58.974 45.000 0.00 0.00 37.69 3.27
371 372 1.405821 TCGTTGTCGGCATTTGGTTTT 59.594 42.857 0.00 0.00 37.69 2.43
372 373 2.159226 TCGTTGTCGGCATTTGGTTTTT 60.159 40.909 0.00 0.00 37.69 1.94
401 402 6.620253 TTTCTTTTTCGTTTCTTTTGGACG 57.380 33.333 0.00 0.00 38.09 4.79
402 403 5.299582 TCTTTTTCGTTTCTTTTGGACGT 57.700 34.783 0.00 0.00 37.95 4.34
403 404 5.090083 TCTTTTTCGTTTCTTTTGGACGTG 58.910 37.500 0.00 0.00 37.95 4.49
404 405 2.461897 TTCGTTTCTTTTGGACGTGC 57.538 45.000 0.00 0.00 37.95 5.34
405 406 0.658897 TCGTTTCTTTTGGACGTGCC 59.341 50.000 4.04 0.43 37.95 5.01
406 407 0.661020 CGTTTCTTTTGGACGTGCCT 59.339 50.000 4.04 0.00 37.63 4.75
407 408 1.596954 CGTTTCTTTTGGACGTGCCTG 60.597 52.381 4.04 0.00 37.63 4.85
408 409 1.404035 GTTTCTTTTGGACGTGCCTGT 59.596 47.619 4.04 0.00 37.63 4.00
409 410 1.021202 TTCTTTTGGACGTGCCTGTG 58.979 50.000 4.04 0.00 37.63 3.66
410 411 1.008538 CTTTTGGACGTGCCTGTGC 60.009 57.895 4.04 0.00 37.63 4.57
411 412 1.447317 CTTTTGGACGTGCCTGTGCT 61.447 55.000 4.04 0.00 38.71 4.40
412 413 1.723608 TTTTGGACGTGCCTGTGCTG 61.724 55.000 4.04 0.00 38.71 4.41
414 415 4.996434 GGACGTGCCTGTGCTGCT 62.996 66.667 0.00 0.00 38.71 4.24
415 416 2.974698 GACGTGCCTGTGCTGCTT 60.975 61.111 0.00 0.00 38.71 3.91
416 417 2.959357 GACGTGCCTGTGCTGCTTC 61.959 63.158 0.00 0.00 38.71 3.86
417 418 3.730761 CGTGCCTGTGCTGCTTCC 61.731 66.667 0.00 0.00 38.71 3.46
418 419 3.730761 GTGCCTGTGCTGCTTCCG 61.731 66.667 0.00 0.00 38.71 4.30
430 431 3.399181 CTTCCGCCCCAGCACCTA 61.399 66.667 0.00 0.00 39.83 3.08
431 432 2.690881 TTCCGCCCCAGCACCTAT 60.691 61.111 0.00 0.00 39.83 2.57
432 433 2.666596 CTTCCGCCCCAGCACCTATC 62.667 65.000 0.00 0.00 39.83 2.08
433 434 4.609018 CCGCCCCAGCACCTATCG 62.609 72.222 0.00 0.00 39.83 2.92
434 435 3.849951 CGCCCCAGCACCTATCGT 61.850 66.667 0.00 0.00 39.83 3.73
435 436 2.203070 GCCCCAGCACCTATCGTG 60.203 66.667 0.00 0.00 46.03 4.35
436 437 2.505982 CCCCAGCACCTATCGTGG 59.494 66.667 0.00 0.00 43.24 4.94
437 438 2.505982 CCCAGCACCTATCGTGGG 59.494 66.667 0.00 0.00 43.83 4.61
438 439 2.367202 CCCAGCACCTATCGTGGGT 61.367 63.158 0.00 0.00 44.22 4.51
439 440 1.602237 CCAGCACCTATCGTGGGTT 59.398 57.895 0.00 0.00 43.24 4.11
440 441 0.744414 CCAGCACCTATCGTGGGTTG 60.744 60.000 0.00 0.00 43.24 3.77
441 442 0.036388 CAGCACCTATCGTGGGTTGT 60.036 55.000 0.00 0.00 43.24 3.32
442 443 1.206132 CAGCACCTATCGTGGGTTGTA 59.794 52.381 0.00 0.00 43.24 2.41
443 444 2.116238 AGCACCTATCGTGGGTTGTAT 58.884 47.619 0.00 0.00 43.24 2.29
444 445 2.102588 AGCACCTATCGTGGGTTGTATC 59.897 50.000 0.00 0.00 43.24 2.24
445 446 2.739292 CACCTATCGTGGGTTGTATCG 58.261 52.381 0.00 0.00 38.96 2.92
446 447 2.359848 CACCTATCGTGGGTTGTATCGA 59.640 50.000 0.00 0.00 38.96 3.59
447 448 3.005472 CACCTATCGTGGGTTGTATCGAT 59.995 47.826 2.16 2.16 43.66 3.59
448 449 3.005472 ACCTATCGTGGGTTGTATCGATG 59.995 47.826 8.54 0.00 41.85 3.84
449 450 3.254903 CCTATCGTGGGTTGTATCGATGA 59.745 47.826 8.54 0.00 41.85 2.92
450 451 4.082190 CCTATCGTGGGTTGTATCGATGAT 60.082 45.833 8.54 1.30 41.85 2.45
451 452 3.092334 TCGTGGGTTGTATCGATGATG 57.908 47.619 8.54 0.00 0.00 3.07
452 453 2.135139 CGTGGGTTGTATCGATGATGG 58.865 52.381 8.54 0.00 0.00 3.51
453 454 2.483013 CGTGGGTTGTATCGATGATGGT 60.483 50.000 8.54 0.00 0.00 3.55
454 455 3.541632 GTGGGTTGTATCGATGATGGTT 58.458 45.455 8.54 0.00 0.00 3.67
455 456 3.312421 GTGGGTTGTATCGATGATGGTTG 59.688 47.826 8.54 0.00 0.00 3.77
456 457 2.290641 GGGTTGTATCGATGATGGTTGC 59.709 50.000 8.54 0.00 0.00 4.17
457 458 3.206150 GGTTGTATCGATGATGGTTGCT 58.794 45.455 8.54 0.00 0.00 3.91
458 459 3.627577 GGTTGTATCGATGATGGTTGCTT 59.372 43.478 8.54 0.00 0.00 3.91
459 460 4.096382 GGTTGTATCGATGATGGTTGCTTT 59.904 41.667 8.54 0.00 0.00 3.51
460 461 4.880886 TGTATCGATGATGGTTGCTTTG 57.119 40.909 8.54 0.00 0.00 2.77
461 462 4.260985 TGTATCGATGATGGTTGCTTTGT 58.739 39.130 8.54 0.00 0.00 2.83
462 463 5.423886 TGTATCGATGATGGTTGCTTTGTA 58.576 37.500 8.54 0.00 0.00 2.41
463 464 5.877564 TGTATCGATGATGGTTGCTTTGTAA 59.122 36.000 8.54 0.00 0.00 2.41
464 465 6.542005 TGTATCGATGATGGTTGCTTTGTAAT 59.458 34.615 8.54 0.00 0.00 1.89
465 466 7.713073 TGTATCGATGATGGTTGCTTTGTAATA 59.287 33.333 8.54 0.00 0.00 0.98
466 467 6.358118 TCGATGATGGTTGCTTTGTAATAC 57.642 37.500 0.00 0.00 0.00 1.89
467 468 5.877564 TCGATGATGGTTGCTTTGTAATACA 59.122 36.000 0.00 0.00 0.00 2.29
468 469 6.372937 TCGATGATGGTTGCTTTGTAATACAA 59.627 34.615 1.08 1.08 36.11 2.41
469 470 7.026562 CGATGATGGTTGCTTTGTAATACAAA 58.973 34.615 16.57 16.57 44.91 2.83
481 482 7.917720 TTTGTAATACAAAGCGGAAGAAAAC 57.082 32.000 13.93 0.00 42.55 2.43
482 483 6.004408 TGTAATACAAAGCGGAAGAAAACC 57.996 37.500 0.00 0.00 0.00 3.27
483 484 4.514781 AATACAAAGCGGAAGAAAACCC 57.485 40.909 0.00 0.00 0.00 4.11
484 485 2.067365 ACAAAGCGGAAGAAAACCCT 57.933 45.000 0.00 0.00 0.00 4.34
485 486 3.217681 ACAAAGCGGAAGAAAACCCTA 57.782 42.857 0.00 0.00 0.00 3.53
486 487 3.763057 ACAAAGCGGAAGAAAACCCTAT 58.237 40.909 0.00 0.00 0.00 2.57
487 488 4.149598 ACAAAGCGGAAGAAAACCCTATT 58.850 39.130 0.00 0.00 0.00 1.73
488 489 4.587262 ACAAAGCGGAAGAAAACCCTATTT 59.413 37.500 0.00 0.00 0.00 1.40
489 490 5.161358 CAAAGCGGAAGAAAACCCTATTTC 58.839 41.667 0.00 0.00 39.16 2.17
490 491 3.007635 AGCGGAAGAAAACCCTATTTCG 58.992 45.455 0.00 0.00 42.73 3.46
491 492 2.096980 GCGGAAGAAAACCCTATTTCGG 59.903 50.000 0.00 0.00 42.73 4.30
492 493 2.096980 CGGAAGAAAACCCTATTTCGGC 59.903 50.000 0.00 0.00 42.73 5.54
493 494 3.086282 GGAAGAAAACCCTATTTCGGCA 58.914 45.455 0.00 0.00 42.73 5.69
494 495 3.508402 GGAAGAAAACCCTATTTCGGCAA 59.492 43.478 0.00 0.00 42.73 4.52
495 496 4.021807 GGAAGAAAACCCTATTTCGGCAAA 60.022 41.667 0.00 0.00 42.73 3.68
496 497 5.510009 GGAAGAAAACCCTATTTCGGCAAAA 60.510 40.000 0.00 0.00 42.73 2.44
497 498 5.738619 AGAAAACCCTATTTCGGCAAAAT 57.261 34.783 2.39 2.39 42.73 1.82
498 499 6.109156 AGAAAACCCTATTTCGGCAAAATT 57.891 33.333 2.13 0.00 42.73 1.82
499 500 6.530120 AGAAAACCCTATTTCGGCAAAATTT 58.470 32.000 2.13 0.00 42.73 1.82
500 501 6.995686 AGAAAACCCTATTTCGGCAAAATTTT 59.004 30.769 0.00 0.00 42.73 1.82
501 502 6.552859 AAACCCTATTTCGGCAAAATTTTG 57.447 33.333 23.74 23.74 38.53 2.44
502 503 4.574892 ACCCTATTTCGGCAAAATTTTGG 58.425 39.130 27.60 14.94 38.53 3.28
503 504 4.041075 ACCCTATTTCGGCAAAATTTTGGT 59.959 37.500 27.60 13.15 38.53 3.67
504 505 4.629634 CCCTATTTCGGCAAAATTTTGGTC 59.370 41.667 27.60 14.59 38.53 4.02
505 506 5.233988 CCTATTTCGGCAAAATTTTGGTCA 58.766 37.500 27.60 7.85 38.53 4.02
506 507 5.698545 CCTATTTCGGCAAAATTTTGGTCAA 59.301 36.000 27.60 12.46 38.53 3.18
507 508 6.203723 CCTATTTCGGCAAAATTTTGGTCAAA 59.796 34.615 27.60 12.42 38.53 2.69
508 509 5.880054 TTTCGGCAAAATTTTGGTCAAAA 57.120 30.435 27.60 14.74 43.48 2.44
509 510 5.880054 TTCGGCAAAATTTTGGTCAAAAA 57.120 30.435 27.60 8.48 42.71 1.94
510 511 5.223225 TCGGCAAAATTTTGGTCAAAAAC 57.777 34.783 27.60 11.47 42.71 2.43
511 512 4.025094 CGGCAAAATTTTGGTCAAAAACG 58.975 39.130 27.60 10.13 42.71 3.60
512 513 4.436183 CGGCAAAATTTTGGTCAAAAACGT 60.436 37.500 27.60 0.00 42.71 3.99
513 514 5.220416 CGGCAAAATTTTGGTCAAAAACGTA 60.220 36.000 27.60 0.00 42.71 3.57
514 515 6.543736 GGCAAAATTTTGGTCAAAAACGTAA 58.456 32.000 27.60 0.00 42.71 3.18
515 516 6.466413 GGCAAAATTTTGGTCAAAAACGTAAC 59.534 34.615 27.60 9.25 42.71 2.50
516 517 7.015877 GCAAAATTTTGGTCAAAAACGTAACA 58.984 30.769 27.60 0.00 42.71 2.41
517 518 7.006653 GCAAAATTTTGGTCAAAAACGTAACAC 59.993 33.333 27.60 5.51 42.71 3.32
518 519 5.935448 ATTTTGGTCAAAAACGTAACACG 57.065 34.783 12.09 0.00 43.25 4.49
519 520 4.675190 TTTGGTCAAAAACGTAACACGA 57.325 36.364 5.61 0.00 46.05 4.35
520 521 3.654952 TGGTCAAAAACGTAACACGAC 57.345 42.857 5.61 0.00 46.05 4.34
521 522 2.029003 TGGTCAAAAACGTAACACGACG 59.971 45.455 5.61 0.00 46.05 5.12
522 523 2.597272 GGTCAAAAACGTAACACGACGG 60.597 50.000 5.61 0.00 46.05 4.79
523 524 2.029124 GTCAAAAACGTAACACGACGGT 59.971 45.455 5.61 0.00 46.94 4.83
626 628 3.255725 TGACCCAATCGATTACGTCAAC 58.744 45.455 25.64 10.21 40.69 3.18
722 724 0.653323 CCGTCAAAAGCGACAACACG 60.653 55.000 0.00 0.00 35.54 4.49
884 896 3.917760 CATCTCCTCCCGGCGACC 61.918 72.222 9.30 0.00 0.00 4.79
914 936 2.126424 GGACGACTCGCTCACCAC 60.126 66.667 0.00 0.00 0.00 4.16
918 940 1.244697 ACGACTCGCTCACCACTCAT 61.245 55.000 0.00 0.00 0.00 2.90
921 943 0.244994 ACTCGCTCACCACTCATCAC 59.755 55.000 0.00 0.00 0.00 3.06
922 944 0.459237 CTCGCTCACCACTCATCACC 60.459 60.000 0.00 0.00 0.00 4.02
923 945 1.184970 TCGCTCACCACTCATCACCA 61.185 55.000 0.00 0.00 0.00 4.17
924 946 0.320683 CGCTCACCACTCATCACCAA 60.321 55.000 0.00 0.00 0.00 3.67
926 948 1.537202 GCTCACCACTCATCACCAAAC 59.463 52.381 0.00 0.00 0.00 2.93
927 949 2.811873 GCTCACCACTCATCACCAAACT 60.812 50.000 0.00 0.00 0.00 2.66
928 950 3.557054 GCTCACCACTCATCACCAAACTA 60.557 47.826 0.00 0.00 0.00 2.24
929 951 4.641396 CTCACCACTCATCACCAAACTAA 58.359 43.478 0.00 0.00 0.00 2.24
930 952 5.241403 TCACCACTCATCACCAAACTAAT 57.759 39.130 0.00 0.00 0.00 1.73
1023 1067 2.757056 CGCAGCTGCAGCAATAGCA 61.757 57.895 38.24 1.61 45.16 3.49
1043 1087 2.376808 AGGTGCGTGATTTCTCTGAG 57.623 50.000 0.00 0.00 0.00 3.35
1046 1090 3.119316 AGGTGCGTGATTTCTCTGAGTAG 60.119 47.826 4.32 0.00 0.00 2.57
1048 1092 4.142447 GGTGCGTGATTTCTCTGAGTAGTA 60.142 45.833 4.32 0.00 0.00 1.82
1049 1093 5.399858 GTGCGTGATTTCTCTGAGTAGTAA 58.600 41.667 4.32 0.00 0.00 2.24
1050 1094 5.513495 GTGCGTGATTTCTCTGAGTAGTAAG 59.487 44.000 4.32 0.00 0.00 2.34
1051 1095 4.501198 GCGTGATTTCTCTGAGTAGTAAGC 59.499 45.833 4.32 1.00 0.00 3.09
1052 1096 4.731000 CGTGATTTCTCTGAGTAGTAAGCG 59.269 45.833 4.32 0.14 0.00 4.68
1053 1097 4.501198 GTGATTTCTCTGAGTAGTAAGCGC 59.499 45.833 0.00 0.00 0.00 5.92
1054 1098 4.399618 TGATTTCTCTGAGTAGTAAGCGCT 59.600 41.667 2.64 2.64 0.00 5.92
1055 1099 5.589050 TGATTTCTCTGAGTAGTAAGCGCTA 59.411 40.000 12.05 0.00 0.00 4.26
1059 1106 5.049167 TCTCTGAGTAGTAAGCGCTAGTAC 58.951 45.833 12.05 11.18 36.87 2.73
1073 1120 6.216569 AGCGCTAGTACGTATAGTTGTACTA 58.783 40.000 8.99 14.30 46.97 1.82
1119 1167 1.701545 GACGGTGGTGTGTGTGTGTG 61.702 60.000 0.00 0.00 0.00 3.82
1120 1168 1.743623 CGGTGGTGTGTGTGTGTGT 60.744 57.895 0.00 0.00 0.00 3.72
1121 1169 1.800032 GGTGGTGTGTGTGTGTGTG 59.200 57.895 0.00 0.00 0.00 3.82
1122 1170 1.136565 GTGGTGTGTGTGTGTGTGC 59.863 57.895 0.00 0.00 0.00 4.57
1123 1171 2.043405 TGGTGTGTGTGTGTGTGCC 61.043 57.895 0.00 0.00 0.00 5.01
1124 1172 2.770589 GGTGTGTGTGTGTGTGCCC 61.771 63.158 0.00 0.00 0.00 5.36
1192 1240 2.286502 GAGCCCCCTCCCCTCTTT 60.287 66.667 0.00 0.00 31.68 2.52
1229 1284 1.760192 ACCACCTACCGCTACTAGTG 58.240 55.000 5.39 0.00 0.00 2.74
1231 1286 2.091994 ACCACCTACCGCTACTAGTGAT 60.092 50.000 5.39 0.00 0.00 3.06
1234 1289 3.499157 CACCTACCGCTACTAGTGATCTC 59.501 52.174 5.39 0.00 0.00 2.75
1235 1290 3.136077 ACCTACCGCTACTAGTGATCTCA 59.864 47.826 5.39 0.00 0.00 3.27
1238 1293 2.688958 ACCGCTACTAGTGATCTCAACC 59.311 50.000 5.39 0.00 0.00 3.77
1239 1294 2.688446 CCGCTACTAGTGATCTCAACCA 59.312 50.000 5.39 0.00 0.00 3.67
1275 1330 4.340381 GGGATGCAATTCATGAGCTAACTT 59.660 41.667 6.93 0.00 35.05 2.66
1276 1331 5.163478 GGGATGCAATTCATGAGCTAACTTT 60.163 40.000 6.93 0.00 35.05 2.66
1335 1399 4.250570 CGTACGTACGTGAAGACTGTAT 57.749 45.455 33.95 1.29 44.13 2.29
1362 1426 0.537143 ACATCTGCCCGTTTGCTCAA 60.537 50.000 0.00 0.00 0.00 3.02
1374 1438 3.357079 GCTCAACGTGCCTGGGTG 61.357 66.667 0.00 0.00 0.00 4.61
1432 1497 4.964897 AGTCACATCTTCCATCCATCACTA 59.035 41.667 0.00 0.00 0.00 2.74
1473 1538 4.465632 AAACAAACTGAAACCCTGTTCC 57.534 40.909 0.00 0.00 36.15 3.62
1615 1680 1.526887 GACACACACTTCACCGACATG 59.473 52.381 0.00 0.00 0.00 3.21
1616 1681 1.138069 ACACACACTTCACCGACATGA 59.862 47.619 0.00 0.00 0.00 3.07
1633 1698 5.177142 CGACATGAATGATCATCTGTTCCTC 59.823 44.000 9.06 1.44 44.53 3.71
1636 1701 4.686972 TGAATGATCATCTGTTCCTCGAC 58.313 43.478 9.06 0.00 0.00 4.20
1642 1707 2.159240 TCATCTGTTCCTCGACCGAATG 60.159 50.000 0.00 0.00 0.00 2.67
1652 1717 0.038159 CGACCGAATGCCCTCCTATC 60.038 60.000 0.00 0.00 0.00 2.08
1679 1749 5.443185 CACCAATGCTTATACCTTCATGG 57.557 43.478 0.00 0.00 42.93 3.66
1680 1750 5.132502 CACCAATGCTTATACCTTCATGGA 58.867 41.667 0.00 0.00 39.71 3.41
1681 1751 5.771666 CACCAATGCTTATACCTTCATGGAT 59.228 40.000 0.00 0.00 39.71 3.41
1831 1901 9.720874 AGTAAGATCAGATGATATAGCCCATTA 57.279 33.333 0.00 0.00 34.37 1.90
1835 1905 8.703743 AGATCAGATGATATAGCCCATTAACTC 58.296 37.037 0.00 0.00 34.37 3.01
2050 2120 3.855255 TTCCGAATCATAGGAATGCCA 57.145 42.857 0.00 0.00 41.19 4.92
2099 2169 5.410439 AGCGTAATTACATCCTTTTGTTCGT 59.590 36.000 15.67 0.00 0.00 3.85
2197 2268 9.667107 TTTAGCTTGGTATATATGCTAATCCAC 57.333 33.333 12.63 0.69 43.02 4.02
2255 2334 1.134175 CCGGATGTTTGTGGTAATGCC 59.866 52.381 0.00 0.00 37.90 4.40
2266 2345 2.095059 GTGGTAATGCCTGCTTCAACTG 60.095 50.000 0.00 0.00 38.35 3.16
2270 2349 0.886563 ATGCCTGCTTCAACTGCTTC 59.113 50.000 0.00 0.00 0.00 3.86
2271 2350 0.466007 TGCCTGCTTCAACTGCTTCA 60.466 50.000 0.00 0.00 0.00 3.02
2285 2364 0.312102 GCTTCAACTTGCAGGTGGAC 59.688 55.000 5.37 0.00 32.64 4.02
2331 2410 7.516557 TGGAGAGGGTTCAGATATACTACTCTA 59.483 40.741 0.00 0.00 32.70 2.43
2484 2563 5.705609 TCTCAAGGCAAATACAACTTTCC 57.294 39.130 0.00 0.00 0.00 3.13
2571 2660 8.670580 GTGAGTTTTCAGATTGCTTGAAGAAGC 61.671 40.741 0.00 0.00 43.62 3.86
2590 2679 1.220749 GGTGCTGTCGCCAAGGATA 59.779 57.895 0.00 0.00 42.42 2.59
2595 2684 0.108329 CTGTCGCCAAGGATAACGGT 60.108 55.000 0.00 0.00 0.00 4.83
2596 2685 0.108520 TGTCGCCAAGGATAACGGTC 60.109 55.000 0.00 0.00 0.00 4.79
2598 2687 2.522638 CGCCAAGGATAACGGTCGC 61.523 63.158 0.00 0.00 0.00 5.19
2599 2688 1.153429 GCCAAGGATAACGGTCGCT 60.153 57.895 0.00 0.00 0.00 4.93
2600 2689 1.429148 GCCAAGGATAACGGTCGCTG 61.429 60.000 0.00 0.00 0.00 5.18
2601 2690 1.429148 CCAAGGATAACGGTCGCTGC 61.429 60.000 0.00 0.00 0.00 5.25
2807 2906 6.146216 TGTGCATTACAGTTAATTTTGGACG 58.854 36.000 0.00 0.00 33.42 4.79
2863 3114 4.201891 GCTTTCCAACACATCTGCTCTATG 60.202 45.833 0.00 0.00 0.00 2.23
2871 3122 6.674694 ACACATCTGCTCTATGTTCAAATC 57.325 37.500 0.00 0.00 35.39 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.734723 CCACGCTGTCTCACCACG 60.735 66.667 0.00 0.00 0.00 4.94
1 2 2.357517 CCCACGCTGTCTCACCAC 60.358 66.667 0.00 0.00 0.00 4.16
2 3 1.691195 TTTCCCACGCTGTCTCACCA 61.691 55.000 0.00 0.00 0.00 4.17
3 4 1.070786 TTTCCCACGCTGTCTCACC 59.929 57.895 0.00 0.00 0.00 4.02
4 5 0.249911 AGTTTCCCACGCTGTCTCAC 60.250 55.000 0.00 0.00 0.00 3.51
5 6 0.033504 GAGTTTCCCACGCTGTCTCA 59.966 55.000 0.00 0.00 0.00 3.27
6 7 0.033504 TGAGTTTCCCACGCTGTCTC 59.966 55.000 0.00 0.00 0.00 3.36
7 8 0.468226 TTGAGTTTCCCACGCTGTCT 59.532 50.000 0.00 0.00 0.00 3.41
8 9 0.868406 CTTGAGTTTCCCACGCTGTC 59.132 55.000 0.00 0.00 0.00 3.51
9 10 0.468226 TCTTGAGTTTCCCACGCTGT 59.532 50.000 0.00 0.00 0.00 4.40
10 11 0.868406 GTCTTGAGTTTCCCACGCTG 59.132 55.000 0.00 0.00 0.00 5.18
11 12 0.250338 GGTCTTGAGTTTCCCACGCT 60.250 55.000 0.00 0.00 0.00 5.07
12 13 1.566018 CGGTCTTGAGTTTCCCACGC 61.566 60.000 0.00 0.00 0.00 5.34
13 14 0.249741 ACGGTCTTGAGTTTCCCACG 60.250 55.000 0.00 0.00 0.00 4.94
14 15 2.825861 TACGGTCTTGAGTTTCCCAC 57.174 50.000 0.00 0.00 0.00 4.61
15 16 3.558321 CCAATACGGTCTTGAGTTTCCCA 60.558 47.826 7.73 0.00 0.00 4.37
16 17 3.007635 CCAATACGGTCTTGAGTTTCCC 58.992 50.000 7.73 0.00 0.00 3.97
17 18 2.418976 GCCAATACGGTCTTGAGTTTCC 59.581 50.000 7.73 0.00 36.97 3.13
18 19 2.093783 CGCCAATACGGTCTTGAGTTTC 59.906 50.000 7.73 0.00 36.97 2.78
19 20 2.073816 CGCCAATACGGTCTTGAGTTT 58.926 47.619 7.73 0.00 36.97 2.66
20 21 1.722011 CGCCAATACGGTCTTGAGTT 58.278 50.000 7.73 0.00 36.97 3.01
21 22 0.739813 GCGCCAATACGGTCTTGAGT 60.740 55.000 7.73 0.00 36.97 3.41
22 23 0.739462 TGCGCCAATACGGTCTTGAG 60.739 55.000 4.18 3.39 36.97 3.02
23 24 0.739462 CTGCGCCAATACGGTCTTGA 60.739 55.000 4.18 0.00 36.97 3.02
24 25 1.705337 CCTGCGCCAATACGGTCTTG 61.705 60.000 4.18 0.00 36.97 3.02
25 26 1.449601 CCTGCGCCAATACGGTCTT 60.450 57.895 4.18 0.00 36.97 3.01
26 27 2.186903 CCTGCGCCAATACGGTCT 59.813 61.111 4.18 0.00 36.97 3.85
27 28 2.895372 CCCTGCGCCAATACGGTC 60.895 66.667 4.18 0.00 36.97 4.79
28 29 3.712907 ACCCTGCGCCAATACGGT 61.713 61.111 4.18 0.00 36.97 4.83
29 30 2.940890 ATCACCCTGCGCCAATACGG 62.941 60.000 4.18 0.00 38.11 4.02
30 31 1.523711 ATCACCCTGCGCCAATACG 60.524 57.895 4.18 0.00 0.00 3.06
31 32 0.463654 TCATCACCCTGCGCCAATAC 60.464 55.000 4.18 0.00 0.00 1.89
32 33 0.463654 GTCATCACCCTGCGCCAATA 60.464 55.000 4.18 0.00 0.00 1.90
33 34 1.750399 GTCATCACCCTGCGCCAAT 60.750 57.895 4.18 0.00 0.00 3.16
34 35 2.359850 GTCATCACCCTGCGCCAA 60.360 61.111 4.18 0.00 0.00 4.52
35 36 4.408821 GGTCATCACCCTGCGCCA 62.409 66.667 4.18 0.00 36.54 5.69
38 39 2.028125 ATACCGGTCATCACCCTGCG 62.028 60.000 12.40 0.00 40.01 5.18
39 40 0.532862 CATACCGGTCATCACCCTGC 60.533 60.000 12.40 0.00 40.01 4.85
40 41 1.119684 TCATACCGGTCATCACCCTG 58.880 55.000 12.40 0.00 40.01 4.45
41 42 1.694150 CATCATACCGGTCATCACCCT 59.306 52.381 12.40 0.00 40.01 4.34
42 43 1.270839 CCATCATACCGGTCATCACCC 60.271 57.143 12.40 0.00 40.01 4.61
43 44 1.878102 GCCATCATACCGGTCATCACC 60.878 57.143 12.40 0.00 39.69 4.02
44 45 1.512926 GCCATCATACCGGTCATCAC 58.487 55.000 12.40 0.00 0.00 3.06
45 46 0.033366 CGCCATCATACCGGTCATCA 59.967 55.000 12.40 0.00 0.00 3.07
46 47 0.033504 ACGCCATCATACCGGTCATC 59.966 55.000 12.40 0.00 0.00 2.92
47 48 0.249868 CACGCCATCATACCGGTCAT 60.250 55.000 12.40 0.00 0.00 3.06
48 49 1.142965 CACGCCATCATACCGGTCA 59.857 57.895 12.40 0.00 0.00 4.02
49 50 2.244651 GCACGCCATCATACCGGTC 61.245 63.158 12.40 0.00 0.00 4.79
50 51 2.203015 GCACGCCATCATACCGGT 60.203 61.111 13.98 13.98 0.00 5.28
51 52 1.956170 GAGCACGCCATCATACCGG 60.956 63.158 0.00 0.00 0.00 5.28
52 53 1.956170 GGAGCACGCCATCATACCG 60.956 63.158 0.00 0.00 0.00 4.02
53 54 1.956170 CGGAGCACGCCATCATACC 60.956 63.158 0.00 0.00 34.82 2.73
54 55 1.956170 CCGGAGCACGCCATCATAC 60.956 63.158 0.00 0.00 42.52 2.39
55 56 2.087462 CTCCGGAGCACGCCATCATA 62.087 60.000 20.67 0.00 42.52 2.15
56 57 3.451556 CTCCGGAGCACGCCATCAT 62.452 63.158 20.67 0.00 42.52 2.45
57 58 4.147449 CTCCGGAGCACGCCATCA 62.147 66.667 20.67 0.00 42.52 3.07
71 72 4.530857 CATCACCCCGGACGCTCC 62.531 72.222 0.73 0.00 0.00 4.70
72 73 4.530857 CCATCACCCCGGACGCTC 62.531 72.222 0.73 0.00 0.00 5.03
74 75 4.404098 AACCATCACCCCGGACGC 62.404 66.667 0.73 0.00 0.00 5.19
75 76 2.435938 CAACCATCACCCCGGACG 60.436 66.667 0.73 0.00 0.00 4.79
76 77 2.045340 CCAACCATCACCCCGGAC 60.045 66.667 0.73 0.00 0.00 4.79
77 78 3.334891 CCCAACCATCACCCCGGA 61.335 66.667 0.73 0.00 0.00 5.14
78 79 2.624674 GATCCCAACCATCACCCCGG 62.625 65.000 0.00 0.00 0.00 5.73
79 80 1.152963 GATCCCAACCATCACCCCG 60.153 63.158 0.00 0.00 0.00 5.73
80 81 1.152963 CGATCCCAACCATCACCCC 60.153 63.158 0.00 0.00 0.00 4.95
81 82 1.152963 CCGATCCCAACCATCACCC 60.153 63.158 0.00 0.00 0.00 4.61
82 83 0.179045 CTCCGATCCCAACCATCACC 60.179 60.000 0.00 0.00 0.00 4.02
83 84 0.179045 CCTCCGATCCCAACCATCAC 60.179 60.000 0.00 0.00 0.00 3.06
84 85 0.326143 TCCTCCGATCCCAACCATCA 60.326 55.000 0.00 0.00 0.00 3.07
85 86 0.837272 TTCCTCCGATCCCAACCATC 59.163 55.000 0.00 0.00 0.00 3.51
86 87 1.421646 GATTCCTCCGATCCCAACCAT 59.578 52.381 0.00 0.00 0.00 3.55
87 88 0.837272 GATTCCTCCGATCCCAACCA 59.163 55.000 0.00 0.00 0.00 3.67
88 89 0.108774 GGATTCCTCCGATCCCAACC 59.891 60.000 0.00 0.00 37.65 3.77
89 90 3.708013 GGATTCCTCCGATCCCAAC 57.292 57.895 0.00 0.00 37.65 3.77
93 94 0.682292 GACAGGGATTCCTCCGATCC 59.318 60.000 2.01 0.00 42.67 3.36
94 95 0.315568 CGACAGGGATTCCTCCGATC 59.684 60.000 5.60 0.00 42.67 3.69
95 96 1.115930 CCGACAGGGATTCCTCCGAT 61.116 60.000 11.92 0.00 42.67 4.18
96 97 1.756950 CCGACAGGGATTCCTCCGA 60.757 63.158 11.92 0.00 42.67 4.55
97 98 2.815308 CCGACAGGGATTCCTCCG 59.185 66.667 2.01 0.00 42.67 4.63
98 99 2.506472 GCCGACAGGGATTCCTCC 59.494 66.667 2.01 0.00 42.67 4.30
99 100 2.066999 AGGCCGACAGGGATTCCTC 61.067 63.158 2.01 0.00 42.67 3.71
100 101 2.041265 AGGCCGACAGGGATTCCT 59.959 61.111 2.01 0.00 46.26 3.36
101 102 2.190578 CAGGCCGACAGGGATTCC 59.809 66.667 0.00 0.00 38.47 3.01
102 103 2.190578 CCAGGCCGACAGGGATTC 59.809 66.667 0.00 0.00 38.47 2.52
103 104 4.115199 GCCAGGCCGACAGGGATT 62.115 66.667 0.00 0.00 38.47 3.01
114 115 4.899239 CATCGGAGTCGGCCAGGC 62.899 72.222 1.26 1.26 36.95 4.85
115 116 4.899239 GCATCGGAGTCGGCCAGG 62.899 72.222 2.24 0.00 36.95 4.45
147 148 4.699522 AGGAAGGTTCGGCGGCAC 62.700 66.667 10.53 4.10 0.00 5.01
148 149 4.697756 CAGGAAGGTTCGGCGGCA 62.698 66.667 10.53 0.00 0.00 5.69
150 151 3.665675 CTCCAGGAAGGTTCGGCGG 62.666 68.421 7.21 0.00 39.02 6.13
151 152 2.125512 CTCCAGGAAGGTTCGGCG 60.126 66.667 0.00 0.00 39.02 6.46
152 153 2.269241 CCTCCAGGAAGGTTCGGC 59.731 66.667 0.00 0.00 39.02 5.54
153 154 2.990479 CCCTCCAGGAAGGTTCGG 59.010 66.667 0.00 0.00 38.24 4.30
154 155 2.269241 GCCCTCCAGGAAGGTTCG 59.731 66.667 5.94 0.00 38.24 3.95
155 156 2.125766 AACGCCCTCCAGGAAGGTTC 62.126 60.000 5.94 0.00 38.24 3.62
156 157 2.154074 AACGCCCTCCAGGAAGGTT 61.154 57.895 5.94 0.00 38.24 3.50
157 158 2.529389 AACGCCCTCCAGGAAGGT 60.529 61.111 5.94 0.00 38.24 3.50
158 159 2.045926 CAACGCCCTCCAGGAAGG 60.046 66.667 0.00 0.00 38.24 3.46
159 160 2.045926 CCAACGCCCTCCAGGAAG 60.046 66.667 0.00 0.00 38.24 3.46
160 161 3.646715 CCCAACGCCCTCCAGGAA 61.647 66.667 0.00 0.00 38.24 3.36
161 162 4.974438 ACCCAACGCCCTCCAGGA 62.974 66.667 0.00 0.00 38.24 3.86
162 163 4.722700 CACCCAACGCCCTCCAGG 62.723 72.222 0.00 0.00 39.47 4.45
163 164 3.901797 GACACCCAACGCCCTCCAG 62.902 68.421 0.00 0.00 0.00 3.86
164 165 3.948719 GACACCCAACGCCCTCCA 61.949 66.667 0.00 0.00 0.00 3.86
165 166 3.948719 TGACACCCAACGCCCTCC 61.949 66.667 0.00 0.00 0.00 4.30
166 167 2.668550 GTGACACCCAACGCCCTC 60.669 66.667 0.00 0.00 0.00 4.30
167 168 4.265056 GGTGACACCCAACGCCCT 62.265 66.667 14.16 0.00 30.04 5.19
176 177 1.271434 GGAGAAAGGAAGGGTGACACC 60.271 57.143 16.86 16.86 37.60 4.16
177 178 1.700186 AGGAGAAAGGAAGGGTGACAC 59.300 52.381 0.00 0.00 0.00 3.67
178 179 2.106511 CAAGGAGAAAGGAAGGGTGACA 59.893 50.000 0.00 0.00 0.00 3.58
179 180 2.784347 CAAGGAGAAAGGAAGGGTGAC 58.216 52.381 0.00 0.00 0.00 3.67
180 181 1.073923 GCAAGGAGAAAGGAAGGGTGA 59.926 52.381 0.00 0.00 0.00 4.02
181 182 1.539157 GCAAGGAGAAAGGAAGGGTG 58.461 55.000 0.00 0.00 0.00 4.61
182 183 0.405973 GGCAAGGAGAAAGGAAGGGT 59.594 55.000 0.00 0.00 0.00 4.34
183 184 0.678048 CGGCAAGGAGAAAGGAAGGG 60.678 60.000 0.00 0.00 0.00 3.95
184 185 0.036875 ACGGCAAGGAGAAAGGAAGG 59.963 55.000 0.00 0.00 0.00 3.46
185 186 1.160137 CACGGCAAGGAGAAAGGAAG 58.840 55.000 0.00 0.00 0.00 3.46
186 187 0.472471 ACACGGCAAGGAGAAAGGAA 59.528 50.000 0.00 0.00 0.00 3.36
187 188 0.250295 CACACGGCAAGGAGAAAGGA 60.250 55.000 0.00 0.00 0.00 3.36
188 189 1.856265 GCACACGGCAAGGAGAAAGG 61.856 60.000 0.00 0.00 43.97 3.11
189 190 1.576421 GCACACGGCAAGGAGAAAG 59.424 57.895 0.00 0.00 43.97 2.62
190 191 3.744559 GCACACGGCAAGGAGAAA 58.255 55.556 0.00 0.00 43.97 2.52
211 212 2.935740 GCTGCTGCAAGGGTTTCCC 61.936 63.158 11.11 0.00 40.87 3.97
212 213 2.653115 GCTGCTGCAAGGGTTTCC 59.347 61.111 11.11 0.00 39.41 3.13
213 214 2.256461 CGCTGCTGCAAGGGTTTC 59.744 61.111 16.29 0.00 39.64 2.78
214 215 2.519302 ACGCTGCTGCAAGGGTTT 60.519 55.556 16.29 0.00 40.12 3.27
215 216 2.980233 GACGCTGCTGCAAGGGTT 60.980 61.111 16.29 6.93 42.80 4.11
218 219 3.782244 GACGACGCTGCTGCAAGG 61.782 66.667 16.29 5.86 39.64 3.61
219 220 2.288926 GATGACGACGCTGCTGCAAG 62.289 60.000 16.29 8.20 39.64 4.01
220 221 2.357396 ATGACGACGCTGCTGCAA 60.357 55.556 16.29 0.00 39.64 4.08
221 222 2.810887 GATGACGACGCTGCTGCA 60.811 61.111 16.29 0.88 39.64 4.41
222 223 3.906649 CGATGACGACGCTGCTGC 61.907 66.667 5.34 5.34 42.66 5.25
223 224 2.500442 GACGATGACGACGCTGCTG 61.500 63.158 0.00 0.00 42.66 4.41
224 225 2.202492 GACGATGACGACGCTGCT 60.202 61.111 0.00 0.00 42.66 4.24
230 231 1.063951 AAGAACGCGACGATGACGAC 61.064 55.000 15.93 0.00 42.66 4.34
231 232 0.386352 AAAGAACGCGACGATGACGA 60.386 50.000 15.93 0.00 42.66 4.20
232 233 0.022106 GAAAGAACGCGACGATGACG 59.978 55.000 15.93 0.00 45.75 4.35
233 234 1.337821 AGAAAGAACGCGACGATGAC 58.662 50.000 15.93 0.00 0.00 3.06
234 235 1.719246 CAAGAAAGAACGCGACGATGA 59.281 47.619 15.93 0.00 0.00 2.92
235 236 1.201812 CCAAGAAAGAACGCGACGATG 60.202 52.381 15.93 0.18 0.00 3.84
236 237 1.068474 CCAAGAAAGAACGCGACGAT 58.932 50.000 15.93 0.60 0.00 3.73
237 238 0.031043 TCCAAGAAAGAACGCGACGA 59.969 50.000 15.93 0.00 0.00 4.20
238 239 0.435008 CTCCAAGAAAGAACGCGACG 59.565 55.000 15.93 0.00 0.00 5.12
239 240 0.790814 CCTCCAAGAAAGAACGCGAC 59.209 55.000 15.93 6.52 0.00 5.19
240 241 0.391597 ACCTCCAAGAAAGAACGCGA 59.608 50.000 15.93 0.00 0.00 5.87
241 242 0.512952 CACCTCCAAGAAAGAACGCG 59.487 55.000 3.53 3.53 0.00 6.01
242 243 1.594331 ACACCTCCAAGAAAGAACGC 58.406 50.000 0.00 0.00 0.00 4.84
243 244 2.943033 ACAACACCTCCAAGAAAGAACG 59.057 45.455 0.00 0.00 0.00 3.95
244 245 3.694566 ACACAACACCTCCAAGAAAGAAC 59.305 43.478 0.00 0.00 0.00 3.01
245 246 3.694072 CACACAACACCTCCAAGAAAGAA 59.306 43.478 0.00 0.00 0.00 2.52
246 247 3.278574 CACACAACACCTCCAAGAAAGA 58.721 45.455 0.00 0.00 0.00 2.52
247 248 2.358898 CCACACAACACCTCCAAGAAAG 59.641 50.000 0.00 0.00 0.00 2.62
248 249 2.291282 ACCACACAACACCTCCAAGAAA 60.291 45.455 0.00 0.00 0.00 2.52
249 250 1.283613 ACCACACAACACCTCCAAGAA 59.716 47.619 0.00 0.00 0.00 2.52
250 251 0.916086 ACCACACAACACCTCCAAGA 59.084 50.000 0.00 0.00 0.00 3.02
251 252 2.218603 GTACCACACAACACCTCCAAG 58.781 52.381 0.00 0.00 0.00 3.61
252 253 1.134037 GGTACCACACAACACCTCCAA 60.134 52.381 7.15 0.00 0.00 3.53
253 254 0.470766 GGTACCACACAACACCTCCA 59.529 55.000 7.15 0.00 0.00 3.86
254 255 0.601841 CGGTACCACACAACACCTCC 60.602 60.000 13.54 0.00 0.00 4.30
255 256 0.390124 TCGGTACCACACAACACCTC 59.610 55.000 13.54 0.00 0.00 3.85
256 257 0.105408 GTCGGTACCACACAACACCT 59.895 55.000 13.54 0.00 0.00 4.00
257 258 1.216941 CGTCGGTACCACACAACACC 61.217 60.000 13.54 0.00 0.00 4.16
258 259 1.824272 GCGTCGGTACCACACAACAC 61.824 60.000 13.54 0.00 0.00 3.32
259 260 1.592131 GCGTCGGTACCACACAACA 60.592 57.895 13.54 0.00 0.00 3.33
260 261 0.877213 AAGCGTCGGTACCACACAAC 60.877 55.000 13.54 3.11 0.00 3.32
261 262 0.598158 GAAGCGTCGGTACCACACAA 60.598 55.000 13.54 0.00 0.00 3.33
262 263 1.007038 GAAGCGTCGGTACCACACA 60.007 57.895 13.54 0.00 0.00 3.72
263 264 2.084681 CGAAGCGTCGGTACCACAC 61.085 63.158 14.59 6.82 43.81 3.82
264 265 2.256158 CGAAGCGTCGGTACCACA 59.744 61.111 14.59 0.00 43.81 4.17
273 274 2.100603 CTCCGAGTCCGAAGCGTC 59.899 66.667 0.00 0.00 38.22 5.19
274 275 4.117661 GCTCCGAGTCCGAAGCGT 62.118 66.667 0.00 0.00 38.22 5.07
275 276 3.343788 AAGCTCCGAGTCCGAAGCG 62.344 63.158 0.00 0.00 38.22 4.68
276 277 1.807573 CAAGCTCCGAGTCCGAAGC 60.808 63.158 0.00 0.00 38.22 3.86
277 278 1.153745 CCAAGCTCCGAGTCCGAAG 60.154 63.158 0.00 0.00 38.22 3.79
278 279 1.906824 ACCAAGCTCCGAGTCCGAA 60.907 57.895 0.00 0.00 38.22 4.30
279 280 2.282958 ACCAAGCTCCGAGTCCGA 60.283 61.111 0.00 0.00 38.22 4.55
280 281 2.125912 CACCAAGCTCCGAGTCCG 60.126 66.667 0.00 0.00 0.00 4.79
281 282 1.827399 TTCCACCAAGCTCCGAGTCC 61.827 60.000 0.00 0.00 0.00 3.85
282 283 0.390472 CTTCCACCAAGCTCCGAGTC 60.390 60.000 0.00 0.00 0.00 3.36
283 284 0.832135 TCTTCCACCAAGCTCCGAGT 60.832 55.000 0.00 0.00 31.26 4.18
284 285 0.539051 ATCTTCCACCAAGCTCCGAG 59.461 55.000 0.00 0.00 31.26 4.63
285 286 0.537188 GATCTTCCACCAAGCTCCGA 59.463 55.000 0.00 0.00 31.26 4.55
286 287 0.462759 GGATCTTCCACCAAGCTCCG 60.463 60.000 0.00 0.00 37.60 4.63
287 288 0.106967 GGGATCTTCCACCAAGCTCC 60.107 60.000 0.00 0.00 44.05 4.70
288 289 0.462759 CGGGATCTTCCACCAAGCTC 60.463 60.000 0.00 0.00 38.64 4.09
289 290 1.604378 CGGGATCTTCCACCAAGCT 59.396 57.895 0.00 0.00 38.64 3.74
290 291 1.452108 CCGGGATCTTCCACCAAGC 60.452 63.158 0.00 0.00 38.64 4.01
291 292 0.392998 CACCGGGATCTTCCACCAAG 60.393 60.000 6.32 0.00 38.64 3.61
292 293 1.682849 CACCGGGATCTTCCACCAA 59.317 57.895 6.32 0.00 38.64 3.67
293 294 2.297895 CCACCGGGATCTTCCACCA 61.298 63.158 6.32 0.00 38.64 4.17
294 295 2.590092 CCACCGGGATCTTCCACC 59.410 66.667 6.32 0.00 38.64 4.61
305 306 4.899239 GATCGCTGCTCCCACCGG 62.899 72.222 0.00 0.00 0.00 5.28
307 308 4.148825 ACGATCGCTGCTCCCACC 62.149 66.667 16.60 0.00 0.00 4.61
308 309 2.635229 ATCACGATCGCTGCTCCCAC 62.635 60.000 16.60 0.00 0.00 4.61
309 310 2.426406 ATCACGATCGCTGCTCCCA 61.426 57.895 16.60 0.00 0.00 4.37
310 311 1.953138 CATCACGATCGCTGCTCCC 60.953 63.158 16.60 0.00 0.00 4.30
311 312 0.319383 ATCATCACGATCGCTGCTCC 60.319 55.000 16.60 0.00 0.00 4.70
312 313 1.455030 GAATCATCACGATCGCTGCTC 59.545 52.381 16.60 6.98 31.11 4.26
313 314 1.068281 AGAATCATCACGATCGCTGCT 59.932 47.619 16.60 1.61 31.11 4.24
314 315 1.495878 AGAATCATCACGATCGCTGC 58.504 50.000 16.60 0.00 31.11 5.25
315 316 2.152678 CGAAGAATCATCACGATCGCTG 59.847 50.000 16.60 12.78 31.11 5.18
316 317 2.223595 ACGAAGAATCATCACGATCGCT 60.224 45.455 16.60 0.00 31.11 4.93
317 318 2.120232 ACGAAGAATCATCACGATCGC 58.880 47.619 16.60 0.00 31.11 4.58
318 319 4.761910 AAACGAAGAATCATCACGATCG 57.238 40.909 14.88 14.88 31.11 3.69
319 320 6.307155 ACAAAAACGAAGAATCATCACGATC 58.693 36.000 0.00 0.00 31.11 3.69
320 321 6.241207 ACAAAAACGAAGAATCATCACGAT 57.759 33.333 0.00 0.00 35.12 3.73
321 322 5.666969 ACAAAAACGAAGAATCATCACGA 57.333 34.783 0.00 0.00 33.86 4.35
322 323 5.906838 TCAACAAAAACGAAGAATCATCACG 59.093 36.000 0.00 0.00 35.10 4.35
323 324 7.061094 GGATCAACAAAAACGAAGAATCATCAC 59.939 37.037 0.00 0.00 0.00 3.06
324 325 7.083858 GGATCAACAAAAACGAAGAATCATCA 58.916 34.615 0.00 0.00 0.00 3.07
325 326 6.249260 CGGATCAACAAAAACGAAGAATCATC 59.751 38.462 0.00 0.00 0.00 2.92
326 327 6.086222 CGGATCAACAAAAACGAAGAATCAT 58.914 36.000 0.00 0.00 0.00 2.45
327 328 5.008217 ACGGATCAACAAAAACGAAGAATCA 59.992 36.000 0.00 0.00 0.00 2.57
328 329 5.449304 ACGGATCAACAAAAACGAAGAATC 58.551 37.500 0.00 0.00 0.00 2.52
329 330 5.432885 ACGGATCAACAAAAACGAAGAAT 57.567 34.783 0.00 0.00 0.00 2.40
330 331 4.551217 CGACGGATCAACAAAAACGAAGAA 60.551 41.667 0.00 0.00 0.00 2.52
331 332 3.060138 CGACGGATCAACAAAAACGAAGA 60.060 43.478 0.00 0.00 0.00 2.87
332 333 3.215244 CGACGGATCAACAAAAACGAAG 58.785 45.455 0.00 0.00 0.00 3.79
333 334 2.608546 ACGACGGATCAACAAAAACGAA 59.391 40.909 0.00 0.00 0.00 3.85
334 335 2.203401 ACGACGGATCAACAAAAACGA 58.797 42.857 0.00 0.00 0.00 3.85
335 336 2.656192 ACGACGGATCAACAAAAACG 57.344 45.000 0.00 0.00 0.00 3.60
336 337 3.687200 ACAACGACGGATCAACAAAAAC 58.313 40.909 0.00 0.00 0.00 2.43
337 338 3.544440 CGACAACGACGGATCAACAAAAA 60.544 43.478 0.00 0.00 42.66 1.94
338 339 2.033577 CGACAACGACGGATCAACAAAA 60.034 45.455 0.00 0.00 42.66 2.44
339 340 1.523515 CGACAACGACGGATCAACAAA 59.476 47.619 0.00 0.00 42.66 2.83
340 341 1.133407 CGACAACGACGGATCAACAA 58.867 50.000 0.00 0.00 42.66 2.83
341 342 2.803979 CGACAACGACGGATCAACA 58.196 52.632 0.00 0.00 42.66 3.33
349 350 1.154488 CCAAATGCCGACAACGACG 60.154 57.895 0.00 0.00 42.66 5.12
350 351 0.309612 AACCAAATGCCGACAACGAC 59.690 50.000 0.00 0.00 42.66 4.34
351 352 1.025812 AAACCAAATGCCGACAACGA 58.974 45.000 0.00 0.00 42.66 3.85
352 353 1.846541 AAAACCAAATGCCGACAACG 58.153 45.000 0.00 0.00 39.43 4.10
375 376 8.800031 CGTCCAAAAGAAACGAAAAAGAAAATA 58.200 29.630 0.00 0.00 38.65 1.40
376 377 7.329962 ACGTCCAAAAGAAACGAAAAAGAAAAT 59.670 29.630 0.71 0.00 39.59 1.82
377 378 6.641723 ACGTCCAAAAGAAACGAAAAAGAAAA 59.358 30.769 0.71 0.00 39.59 2.29
378 379 6.088350 CACGTCCAAAAGAAACGAAAAAGAAA 59.912 34.615 0.71 0.00 39.59 2.52
379 380 5.569823 CACGTCCAAAAGAAACGAAAAAGAA 59.430 36.000 0.71 0.00 39.59 2.52
380 381 5.090083 CACGTCCAAAAGAAACGAAAAAGA 58.910 37.500 0.71 0.00 39.59 2.52
381 382 4.259253 GCACGTCCAAAAGAAACGAAAAAG 60.259 41.667 0.71 0.00 39.59 2.27
382 383 3.608939 GCACGTCCAAAAGAAACGAAAAA 59.391 39.130 0.71 0.00 39.59 1.94
383 384 3.172824 GCACGTCCAAAAGAAACGAAAA 58.827 40.909 0.71 0.00 39.59 2.29
384 385 2.478200 GGCACGTCCAAAAGAAACGAAA 60.478 45.455 0.71 0.00 39.59 3.46
385 386 1.064357 GGCACGTCCAAAAGAAACGAA 59.936 47.619 0.71 0.00 39.59 3.85
386 387 0.658897 GGCACGTCCAAAAGAAACGA 59.341 50.000 0.71 0.00 39.59 3.85
387 388 0.661020 AGGCACGTCCAAAAGAAACG 59.339 50.000 6.78 0.00 41.93 3.60
388 389 1.404035 ACAGGCACGTCCAAAAGAAAC 59.596 47.619 6.78 0.00 37.29 2.78
389 390 1.403679 CACAGGCACGTCCAAAAGAAA 59.596 47.619 6.78 0.00 37.29 2.52
390 391 1.021202 CACAGGCACGTCCAAAAGAA 58.979 50.000 6.78 0.00 37.29 2.52
391 392 1.444119 GCACAGGCACGTCCAAAAGA 61.444 55.000 6.78 0.00 40.72 2.52
392 393 1.008538 GCACAGGCACGTCCAAAAG 60.009 57.895 6.78 0.00 40.72 2.27
393 394 1.453015 AGCACAGGCACGTCCAAAA 60.453 52.632 6.78 0.00 44.61 2.44
394 395 2.186160 CAGCACAGGCACGTCCAAA 61.186 57.895 6.78 0.00 44.61 3.28
395 396 2.591429 CAGCACAGGCACGTCCAA 60.591 61.111 6.78 0.00 44.61 3.53
397 398 4.996434 AGCAGCACAGGCACGTCC 62.996 66.667 0.00 0.00 44.61 4.79
398 399 2.959357 GAAGCAGCACAGGCACGTC 61.959 63.158 0.00 0.00 44.61 4.34
399 400 2.974698 GAAGCAGCACAGGCACGT 60.975 61.111 0.00 0.00 44.61 4.49
400 401 3.730761 GGAAGCAGCACAGGCACG 61.731 66.667 0.00 0.00 44.61 5.34
401 402 3.730761 CGGAAGCAGCACAGGCAC 61.731 66.667 0.00 0.00 44.61 5.01
413 414 2.666596 GATAGGTGCTGGGGCGGAAG 62.667 65.000 0.00 0.00 42.25 3.46
414 415 2.690881 ATAGGTGCTGGGGCGGAA 60.691 61.111 0.00 0.00 42.25 4.30
415 416 3.161450 GATAGGTGCTGGGGCGGA 61.161 66.667 0.00 0.00 42.25 5.54
416 417 4.609018 CGATAGGTGCTGGGGCGG 62.609 72.222 0.00 0.00 42.25 6.13
417 418 3.849951 ACGATAGGTGCTGGGGCG 61.850 66.667 0.00 0.00 40.77 6.13
418 419 2.203070 CACGATAGGTGCTGGGGC 60.203 66.667 0.00 0.00 40.33 5.80
419 420 2.505982 CCACGATAGGTGCTGGGG 59.494 66.667 0.00 0.00 45.62 4.96
420 421 2.505982 CCCACGATAGGTGCTGGG 59.494 66.667 0.00 0.00 45.62 4.45
421 422 0.744414 CAACCCACGATAGGTGCTGG 60.744 60.000 0.00 0.00 45.62 4.85
422 423 0.036388 ACAACCCACGATAGGTGCTG 60.036 55.000 0.00 0.00 45.62 4.41
423 424 1.563924 TACAACCCACGATAGGTGCT 58.436 50.000 0.00 0.00 45.62 4.40
424 425 2.480845 GATACAACCCACGATAGGTGC 58.519 52.381 0.00 0.00 45.62 5.01
425 426 2.359848 TCGATACAACCCACGATAGGTG 59.640 50.000 0.00 0.00 46.57 4.00
426 427 2.658285 TCGATACAACCCACGATAGGT 58.342 47.619 0.00 0.00 40.14 3.08
427 428 3.254903 TCATCGATACAACCCACGATAGG 59.745 47.826 0.00 0.00 42.23 2.57
428 429 4.499037 TCATCGATACAACCCACGATAG 57.501 45.455 0.00 0.00 42.23 2.08
429 430 4.321675 CCATCATCGATACAACCCACGATA 60.322 45.833 0.00 0.00 42.23 2.92
430 431 3.554960 CCATCATCGATACAACCCACGAT 60.555 47.826 0.00 0.00 44.37 3.73
431 432 2.223947 CCATCATCGATACAACCCACGA 60.224 50.000 0.00 0.00 39.01 4.35
432 433 2.135139 CCATCATCGATACAACCCACG 58.865 52.381 0.00 0.00 0.00 4.94
433 434 3.194005 ACCATCATCGATACAACCCAC 57.806 47.619 0.00 0.00 0.00 4.61
434 435 3.540617 CAACCATCATCGATACAACCCA 58.459 45.455 0.00 0.00 0.00 4.51
435 436 2.290641 GCAACCATCATCGATACAACCC 59.709 50.000 0.00 0.00 0.00 4.11
436 437 3.206150 AGCAACCATCATCGATACAACC 58.794 45.455 0.00 0.00 0.00 3.77
437 438 4.882671 AAGCAACCATCATCGATACAAC 57.117 40.909 0.00 0.00 0.00 3.32
438 439 4.699735 ACAAAGCAACCATCATCGATACAA 59.300 37.500 0.00 0.00 0.00 2.41
439 440 4.260985 ACAAAGCAACCATCATCGATACA 58.739 39.130 0.00 0.00 0.00 2.29
440 441 4.882671 ACAAAGCAACCATCATCGATAC 57.117 40.909 0.00 0.00 0.00 2.24
441 442 7.713073 TGTATTACAAAGCAACCATCATCGATA 59.287 33.333 0.00 0.00 0.00 2.92
442 443 6.542005 TGTATTACAAAGCAACCATCATCGAT 59.458 34.615 0.00 0.00 0.00 3.59
443 444 5.877564 TGTATTACAAAGCAACCATCATCGA 59.122 36.000 0.00 0.00 0.00 3.59
444 445 6.117911 TGTATTACAAAGCAACCATCATCG 57.882 37.500 0.00 0.00 0.00 3.84
457 458 6.919115 GGTTTTCTTCCGCTTTGTATTACAAA 59.081 34.615 18.39 18.39 44.91 2.83
458 459 6.440436 GGTTTTCTTCCGCTTTGTATTACAA 58.560 36.000 5.14 5.14 36.11 2.41
459 460 5.048573 GGGTTTTCTTCCGCTTTGTATTACA 60.049 40.000 0.00 0.00 0.00 2.41
460 461 5.182570 AGGGTTTTCTTCCGCTTTGTATTAC 59.817 40.000 0.00 0.00 0.00 1.89
461 462 5.318630 AGGGTTTTCTTCCGCTTTGTATTA 58.681 37.500 0.00 0.00 0.00 0.98
462 463 4.149598 AGGGTTTTCTTCCGCTTTGTATT 58.850 39.130 0.00 0.00 0.00 1.89
463 464 3.763057 AGGGTTTTCTTCCGCTTTGTAT 58.237 40.909 0.00 0.00 0.00 2.29
464 465 3.217681 AGGGTTTTCTTCCGCTTTGTA 57.782 42.857 0.00 0.00 0.00 2.41
465 466 2.067365 AGGGTTTTCTTCCGCTTTGT 57.933 45.000 0.00 0.00 0.00 2.83
466 467 4.783764 AATAGGGTTTTCTTCCGCTTTG 57.216 40.909 0.00 0.00 0.00 2.77
467 468 4.082949 CGAAATAGGGTTTTCTTCCGCTTT 60.083 41.667 0.00 0.00 34.19 3.51
468 469 3.439129 CGAAATAGGGTTTTCTTCCGCTT 59.561 43.478 0.00 0.00 34.19 4.68
469 470 3.007635 CGAAATAGGGTTTTCTTCCGCT 58.992 45.455 0.00 0.00 34.19 5.52
470 471 2.096980 CCGAAATAGGGTTTTCTTCCGC 59.903 50.000 0.00 0.00 34.19 5.54
471 472 2.096980 GCCGAAATAGGGTTTTCTTCCG 59.903 50.000 0.00 0.00 34.19 4.30
472 473 3.086282 TGCCGAAATAGGGTTTTCTTCC 58.914 45.455 0.00 0.00 34.19 3.46
473 474 4.776795 TTGCCGAAATAGGGTTTTCTTC 57.223 40.909 0.00 0.00 34.19 2.87
474 475 5.538849 TTTTGCCGAAATAGGGTTTTCTT 57.461 34.783 0.00 0.00 34.19 2.52
475 476 5.738619 ATTTTGCCGAAATAGGGTTTTCT 57.261 34.783 0.00 0.00 36.20 2.52
476 477 6.795098 AAATTTTGCCGAAATAGGGTTTTC 57.205 33.333 0.00 0.00 36.96 2.29
477 478 6.016693 CCAAAATTTTGCCGAAATAGGGTTTT 60.017 34.615 22.90 0.00 36.96 2.43
478 479 5.471797 CCAAAATTTTGCCGAAATAGGGTTT 59.528 36.000 22.90 0.00 36.96 3.27
479 480 5.000591 CCAAAATTTTGCCGAAATAGGGTT 58.999 37.500 22.90 0.00 36.96 4.11
480 481 4.041075 ACCAAAATTTTGCCGAAATAGGGT 59.959 37.500 22.90 10.23 36.96 4.34
481 482 4.574892 ACCAAAATTTTGCCGAAATAGGG 58.425 39.130 22.90 9.64 36.96 3.53
482 483 5.233988 TGACCAAAATTTTGCCGAAATAGG 58.766 37.500 22.90 10.30 36.96 2.57
483 484 6.777526 TTGACCAAAATTTTGCCGAAATAG 57.222 33.333 22.90 10.75 36.96 1.73
484 485 7.553881 TTTTGACCAAAATTTTGCCGAAATA 57.446 28.000 22.90 8.48 36.96 1.40
485 486 6.442513 TTTTGACCAAAATTTTGCCGAAAT 57.557 29.167 22.90 5.76 39.63 2.17
486 487 5.880054 TTTTGACCAAAATTTTGCCGAAA 57.120 30.435 22.90 21.69 35.57 3.46
487 488 5.631992 GTTTTTGACCAAAATTTTGCCGAA 58.368 33.333 22.90 18.18 39.69 4.30
488 489 4.201724 CGTTTTTGACCAAAATTTTGCCGA 60.202 37.500 22.90 14.14 39.69 5.54
489 490 4.025094 CGTTTTTGACCAAAATTTTGCCG 58.975 39.130 22.90 13.94 39.69 5.69
490 491 4.975788 ACGTTTTTGACCAAAATTTTGCC 58.024 34.783 22.90 16.81 39.69 4.52
491 492 7.006653 GTGTTACGTTTTTGACCAAAATTTTGC 59.993 33.333 22.90 12.34 39.69 3.68
492 493 7.212782 CGTGTTACGTTTTTGACCAAAATTTTG 59.787 33.333 21.65 21.65 36.72 2.44
493 494 7.115947 TCGTGTTACGTTTTTGACCAAAATTTT 59.884 29.630 8.52 0.00 43.14 1.82
494 495 6.585322 TCGTGTTACGTTTTTGACCAAAATTT 59.415 30.769 8.52 0.00 43.14 1.82
495 496 6.033725 GTCGTGTTACGTTTTTGACCAAAATT 59.966 34.615 8.52 0.83 43.14 1.82
496 497 5.512434 GTCGTGTTACGTTTTTGACCAAAAT 59.488 36.000 8.52 0.00 43.14 1.82
497 498 4.850470 GTCGTGTTACGTTTTTGACCAAAA 59.150 37.500 0.00 4.00 43.14 2.44
498 499 4.401714 GTCGTGTTACGTTTTTGACCAAA 58.598 39.130 0.00 0.00 43.14 3.28
499 500 3.483248 CGTCGTGTTACGTTTTTGACCAA 60.483 43.478 0.00 0.00 43.14 3.67
500 501 2.029003 CGTCGTGTTACGTTTTTGACCA 59.971 45.455 0.00 0.00 43.14 4.02
501 502 2.597272 CCGTCGTGTTACGTTTTTGACC 60.597 50.000 0.00 0.00 43.14 4.02
502 503 2.029124 ACCGTCGTGTTACGTTTTTGAC 59.971 45.455 0.00 0.00 43.14 3.18
503 504 2.266554 ACCGTCGTGTTACGTTTTTGA 58.733 42.857 0.00 0.00 43.14 2.69
504 505 2.717524 ACCGTCGTGTTACGTTTTTG 57.282 45.000 0.00 0.00 43.14 2.44
505 506 5.402464 AATAACCGTCGTGTTACGTTTTT 57.598 34.783 0.00 0.00 43.14 1.94
506 507 6.704512 ATAATAACCGTCGTGTTACGTTTT 57.295 33.333 0.00 3.44 43.14 2.43
507 508 6.472163 CCTATAATAACCGTCGTGTTACGTTT 59.528 38.462 0.00 0.00 43.14 3.60
508 509 5.971202 CCTATAATAACCGTCGTGTTACGTT 59.029 40.000 0.00 0.00 43.14 3.99
509 510 5.295787 TCCTATAATAACCGTCGTGTTACGT 59.704 40.000 8.01 0.00 43.14 3.57
510 511 5.747565 TCCTATAATAACCGTCGTGTTACG 58.252 41.667 8.01 0.00 44.19 3.18
511 512 7.649306 ACATTCCTATAATAACCGTCGTGTTAC 59.351 37.037 8.01 0.00 33.78 2.50
512 513 7.715657 ACATTCCTATAATAACCGTCGTGTTA 58.284 34.615 8.21 8.21 35.33 2.41
513 514 6.576185 ACATTCCTATAATAACCGTCGTGTT 58.424 36.000 4.82 4.82 0.00 3.32
514 515 6.152932 ACATTCCTATAATAACCGTCGTGT 57.847 37.500 0.00 0.00 0.00 4.49
515 516 6.921857 AGAACATTCCTATAATAACCGTCGTG 59.078 38.462 0.00 0.00 0.00 4.35
516 517 7.047460 AGAACATTCCTATAATAACCGTCGT 57.953 36.000 0.00 0.00 0.00 4.34
517 518 9.635520 AATAGAACATTCCTATAATAACCGTCG 57.364 33.333 0.00 0.00 0.00 5.12
563 564 1.091771 CCAGTAGAATGGCTGCCACG 61.092 60.000 25.99 7.23 35.80 4.94
626 628 2.949714 AATGACGTTTGTTCTCAGCG 57.050 45.000 0.00 0.00 0.00 5.18
752 754 0.867753 CGTGATCGTGCACCTAGCTC 60.868 60.000 12.15 2.79 45.94 4.09
786 788 3.547613 GCTAATCGTACGTCTCCGTCATT 60.548 47.826 16.05 7.42 46.28 2.57
884 896 1.690352 AGTCGTCCCGGGTATTTATGG 59.310 52.381 22.86 2.02 0.00 2.74
914 936 5.523552 TGATGCGTATTAGTTTGGTGATGAG 59.476 40.000 0.00 0.00 0.00 2.90
918 940 5.079689 TCTGATGCGTATTAGTTTGGTGA 57.920 39.130 5.24 0.00 0.00 4.02
921 943 6.923508 TGAGTATCTGATGCGTATTAGTTTGG 59.076 38.462 5.24 0.00 34.92 3.28
922 944 7.930513 TGAGTATCTGATGCGTATTAGTTTG 57.069 36.000 5.24 0.00 34.92 2.93
923 945 9.197694 GAATGAGTATCTGATGCGTATTAGTTT 57.802 33.333 5.24 0.00 34.92 2.66
924 946 8.360390 TGAATGAGTATCTGATGCGTATTAGTT 58.640 33.333 5.24 0.19 34.92 2.24
926 948 8.239998 TCTGAATGAGTATCTGATGCGTATTAG 58.760 37.037 0.00 0.00 34.92 1.73
927 949 8.023706 GTCTGAATGAGTATCTGATGCGTATTA 58.976 37.037 0.00 0.00 34.92 0.98
928 950 6.865726 GTCTGAATGAGTATCTGATGCGTATT 59.134 38.462 0.00 5.48 34.92 1.89
929 951 6.385843 GTCTGAATGAGTATCTGATGCGTAT 58.614 40.000 0.00 0.00 34.92 3.06
930 952 5.560953 CGTCTGAATGAGTATCTGATGCGTA 60.561 44.000 0.00 0.00 34.92 4.42
1018 1062 2.939103 GAGAAATCACGCACCTTGCTAT 59.061 45.455 0.00 0.00 42.25 2.97
1023 1067 2.037772 ACTCAGAGAAATCACGCACCTT 59.962 45.455 3.79 0.00 0.00 3.50
1036 1080 4.139859 ACTAGCGCTTACTACTCAGAGA 57.860 45.455 18.68 0.00 0.00 3.10
1043 1087 6.698359 ACTATACGTACTAGCGCTTACTAC 57.302 41.667 18.68 11.76 34.88 2.73
1046 1090 5.742446 ACAACTATACGTACTAGCGCTTAC 58.258 41.667 18.68 12.65 34.88 2.34
1048 1092 4.889832 ACAACTATACGTACTAGCGCTT 57.110 40.909 18.68 0.00 34.88 4.68
1049 1093 5.053145 AGTACAACTATACGTACTAGCGCT 58.947 41.667 17.26 17.26 44.96 5.92
1050 1094 5.335827 AGTACAACTATACGTACTAGCGC 57.664 43.478 0.00 0.00 44.96 5.92
1051 1095 7.394870 TGTAGTACAACTATACGTACTAGCG 57.605 40.000 0.00 0.08 46.53 4.26
1052 1096 8.982685 TGATGTAGTACAACTATACGTACTAGC 58.017 37.037 7.16 6.20 46.53 3.42
1073 1120 7.389330 TCAATTACTCCACGTACAAAATGATGT 59.611 33.333 0.00 0.00 37.32 3.06
1083 1131 3.119708 ACCGTCTCAATTACTCCACGTAC 60.120 47.826 0.00 0.00 0.00 3.67
1087 1135 2.028385 ACCACCGTCTCAATTACTCCAC 60.028 50.000 0.00 0.00 0.00 4.02
1122 1170 4.680237 TCGTGGAACTGCAGCGGG 62.680 66.667 15.27 0.00 31.75 6.13
1123 1171 2.175184 CTTTCGTGGAACTGCAGCGG 62.175 60.000 15.27 0.00 31.75 5.52
1124 1172 1.205064 CTTTCGTGGAACTGCAGCG 59.795 57.895 15.27 9.11 31.75 5.18
1220 1272 5.527951 CAGATGGTTGAGATCACTAGTAGC 58.472 45.833 0.00 0.00 0.00 3.58
1229 1284 3.204306 TGGATGCAGATGGTTGAGATC 57.796 47.619 0.00 0.00 0.00 2.75
1231 1286 2.484241 CGATGGATGCAGATGGTTGAGA 60.484 50.000 0.00 0.00 0.00 3.27
1234 1289 0.949397 CCGATGGATGCAGATGGTTG 59.051 55.000 0.00 0.00 0.00 3.77
1235 1290 0.179009 CCCGATGGATGCAGATGGTT 60.179 55.000 0.00 0.00 0.00 3.67
1257 1312 8.748380 AGTTTAAAAGTTAGCTCATGAATTGC 57.252 30.769 0.00 0.00 0.00 3.56
1275 1330 9.275398 ACATAATCAACCGACAGTTAGTTTAAA 57.725 29.630 0.00 0.00 36.18 1.52
1276 1331 8.714179 CACATAATCAACCGACAGTTAGTTTAA 58.286 33.333 0.00 0.00 36.18 1.52
1335 1399 3.275617 AACGGGCAGATGTAGCAAATA 57.724 42.857 0.00 0.00 0.00 1.40
1374 1438 0.672711 GTACCTTGCAGTTCCGGGTC 60.673 60.000 0.00 0.00 0.00 4.46
1432 1497 2.341846 TTCTTCTCCACGCAAGGTTT 57.658 45.000 0.00 0.00 46.39 3.27
1589 1654 2.661866 GAAGTGTGTGTCGGCGCT 60.662 61.111 7.64 0.00 0.00 5.92
1615 1680 4.054671 GGTCGAGGAACAGATGATCATTC 58.945 47.826 10.14 3.91 0.00 2.67
1616 1681 3.491619 CGGTCGAGGAACAGATGATCATT 60.492 47.826 10.14 0.00 0.00 2.57
1633 1698 0.038159 GATAGGAGGGCATTCGGTCG 60.038 60.000 0.00 0.00 0.00 4.79
1636 1701 0.610687 GAGGATAGGAGGGCATTCGG 59.389 60.000 0.00 0.00 0.00 4.30
1642 1707 2.737830 GTGCGAGGATAGGAGGGC 59.262 66.667 0.00 0.00 0.00 5.19
1678 1748 0.747852 GAGTGGAGGGAAGACGATCC 59.252 60.000 0.00 0.00 38.86 3.36
1679 1749 0.747852 GGAGTGGAGGGAAGACGATC 59.252 60.000 0.00 0.00 0.00 3.69
1680 1750 0.041238 TGGAGTGGAGGGAAGACGAT 59.959 55.000 0.00 0.00 0.00 3.73
1681 1751 0.041238 ATGGAGTGGAGGGAAGACGA 59.959 55.000 0.00 0.00 0.00 4.20
1732 1802 1.985116 AAGCTCTCTCCGGTGACCC 60.985 63.158 0.00 0.00 0.00 4.46
1831 1901 7.944554 TGAAACATCATTTTCTTCCCTAGAGTT 59.055 33.333 0.00 0.00 36.58 3.01
1835 1905 7.609532 AGACTGAAACATCATTTTCTTCCCTAG 59.390 37.037 0.00 0.00 36.58 3.02
2050 2120 5.220662 CGAGCAATGTGAACTAATCCGAAAT 60.221 40.000 0.00 0.00 0.00 2.17
2099 2169 2.893489 TCTTGTCTAGAGCAGCAACTGA 59.107 45.455 0.00 0.00 32.44 3.41
2197 2268 4.749245 ACACATTTGGTTTAAGCTCGAG 57.251 40.909 8.45 8.45 0.00 4.04
2255 2334 3.369385 CAAGTTGAAGCAGTTGAAGCAG 58.631 45.455 0.00 0.00 0.00 4.24
2266 2345 0.312102 GTCCACCTGCAAGTTGAAGC 59.688 55.000 7.16 0.00 0.00 3.86
2270 2349 1.603678 GCAATGTCCACCTGCAAGTTG 60.604 52.381 0.00 0.00 36.09 3.16
2271 2350 0.675633 GCAATGTCCACCTGCAAGTT 59.324 50.000 0.00 0.00 36.09 2.66
2331 2410 2.683867 CGATCTCGTAGTTCCTCAGGTT 59.316 50.000 0.00 0.00 34.11 3.50
2484 2563 6.890979 AGGAATGAAGAAAAGAACTTGGAG 57.109 37.500 0.00 0.00 0.00 3.86
2576 2665 0.108329 ACCGTTATCCTTGGCGACAG 60.108 55.000 0.00 0.00 44.54 3.51
2587 2676 2.526120 GCAGGCAGCGACCGTTATC 61.526 63.158 0.00 0.00 33.69 1.75
2885 3136 2.568956 TCTGCTTTATGCTGGACAGAGT 59.431 45.455 3.00 0.00 43.37 3.24
2886 3137 3.257469 TCTGCTTTATGCTGGACAGAG 57.743 47.619 3.00 0.00 43.37 3.35
2887 3138 3.701205 TTCTGCTTTATGCTGGACAGA 57.299 42.857 3.00 0.00 43.37 3.41
2895 3146 8.587111 GCTATTGTTTACTTTTCTGCTTTATGC 58.413 33.333 0.00 0.00 43.25 3.14
3497 4353 8.836268 TTCGGTATTAGTTTGTATTGTTCTGT 57.164 30.769 0.00 0.00 0.00 3.41
3498 4354 9.146984 TCTTCGGTATTAGTTTGTATTGTTCTG 57.853 33.333 0.00 0.00 0.00 3.02
3499 4355 9.715121 TTCTTCGGTATTAGTTTGTATTGTTCT 57.285 29.630 0.00 0.00 0.00 3.01
3500 4356 9.968743 CTTCTTCGGTATTAGTTTGTATTGTTC 57.031 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.