Multiple sequence alignment - TraesCS4D01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G200600 chr4D 100.000 5116 0 0 1 5116 347526223 347521108 0.000000e+00 9448
1 TraesCS4D01G200600 chr4D 92.727 220 15 1 2238 2456 349216706 349216925 2.970000e-82 316
2 TraesCS4D01G200600 chr4A 92.493 1785 98 23 2454 4211 117890589 117892364 0.000000e+00 2521
3 TraesCS4D01G200600 chr4A 91.792 1133 54 14 804 1916 117889295 117890408 0.000000e+00 1541
4 TraesCS4D01G200600 chr4A 94.398 714 30 8 1 707 117888574 117889284 0.000000e+00 1088
5 TraesCS4D01G200600 chr4A 94.083 169 9 1 2074 2241 117890407 117890575 6.570000e-64 255
6 TraesCS4D01G200600 chr4B 92.020 1792 97 22 2583 4357 428026628 428024866 0.000000e+00 2475
7 TraesCS4D01G200600 chr4B 93.737 463 18 5 884 1335 428028096 428027634 0.000000e+00 684
8 TraesCS4D01G200600 chr4B 89.981 539 38 8 1386 1916 428027434 428026904 0.000000e+00 682
9 TraesCS4D01G200600 chr4B 88.235 391 44 2 1 389 428030354 428029964 2.790000e-127 466
10 TraesCS4D01G200600 chr4B 88.112 286 31 2 4832 5114 491090658 491090373 2.280000e-88 337
11 TraesCS4D01G200600 chr4B 92.694 219 15 1 2239 2456 565833496 565833278 1.070000e-81 315
12 TraesCS4D01G200600 chr4B 95.858 169 6 1 2074 2241 428026905 428026737 6.530000e-69 272
13 TraesCS4D01G200600 chr4B 95.876 97 3 1 2454 2550 428026723 428026628 6.860000e-34 156
14 TraesCS4D01G200600 chr5D 82.274 598 83 7 4538 5114 510105085 510105680 3.560000e-136 496
15 TraesCS4D01G200600 chr5D 87.762 286 32 2 4832 5114 352845317 352845032 1.060000e-86 331
16 TraesCS4D01G200600 chr5D 87.805 287 26 7 4832 5114 37646450 37646169 1.370000e-85 327
17 TraesCS4D01G200600 chr7B 81.426 603 85 9 4538 5114 388164480 388163879 7.760000e-128 468
18 TraesCS4D01G200600 chr7B 83.389 301 50 0 4538 4838 437208143 437207843 3.900000e-71 279
19 TraesCS4D01G200600 chr6A 81.411 581 82 10 4538 5114 23901319 23901877 7.810000e-123 451
20 TraesCS4D01G200600 chr6B 81.922 437 67 11 4538 4962 551770929 551771365 4.870000e-95 359
21 TraesCS4D01G200600 chr6B 93.939 165 9 1 1913 2076 132353579 132353415 1.100000e-61 248
22 TraesCS4D01G200600 chr6B 93.413 167 7 4 1912 2075 131346428 131346263 1.420000e-60 244
23 TraesCS4D01G200600 chr6B 90.811 185 11 6 1915 2096 652640710 652640529 5.120000e-60 243
24 TraesCS4D01G200600 chr5B 88.850 287 27 4 4830 5112 327736365 327736650 1.050000e-91 348
25 TraesCS4D01G200600 chr5B 92.694 219 15 1 2239 2456 121202494 121202276 1.070000e-81 315
26 TraesCS4D01G200600 chr5B 93.491 169 9 2 1913 2079 341533732 341533900 3.060000e-62 250
27 TraesCS4D01G200600 chr1A 88.153 287 29 4 4832 5114 484294841 484295126 2.280000e-88 337
28 TraesCS4D01G200600 chr1A 92.727 220 15 1 2238 2456 579954225 579954006 2.970000e-82 316
29 TraesCS4D01G200600 chr1A 82.943 299 51 0 4540 4838 484294516 484294814 2.350000e-68 270
30 TraesCS4D01G200600 chr3D 87.762 286 32 2 4832 5114 394198925 394199210 1.060000e-86 331
31 TraesCS4D01G200600 chr3D 87.153 288 31 5 4832 5114 504978418 504978704 6.390000e-84 322
32 TraesCS4D01G200600 chr3D 93.151 219 14 1 2239 2456 236628802 236629020 2.300000e-83 320
33 TraesCS4D01G200600 chr3D 83.278 299 49 1 4538 4836 597282127 597282424 1.810000e-69 274
34 TraesCS4D01G200600 chr1D 93.151 219 14 1 2239 2456 378551908 378551690 2.300000e-83 320
35 TraesCS4D01G200600 chr1D 76.972 634 93 33 4238 4827 223536889 223536265 3.850000e-81 313
36 TraesCS4D01G200600 chr1D 90.323 186 14 4 1907 2090 415400074 415400257 1.840000e-59 241
37 TraesCS4D01G200600 chr1D 77.517 298 44 9 81 376 258331784 258332060 1.910000e-34 158
38 TraesCS4D01G200600 chr2D 92.377 223 16 1 2235 2456 155616530 155616752 2.970000e-82 316
39 TraesCS4D01G200600 chr2D 84.667 300 46 0 4538 4837 111499901 111500200 2.990000e-77 300
40 TraesCS4D01G200600 chr2D 76.774 310 41 12 202 480 631292746 631293055 1.480000e-30 145
41 TraesCS4D01G200600 chr5A 92.273 220 16 1 2238 2456 706288466 706288247 1.380000e-80 311
42 TraesCS4D01G200600 chr5A 90.171 234 20 3 2239 2470 69320868 69320636 8.320000e-78 302
43 TraesCS4D01G200600 chr7D 98.758 161 2 0 1915 2075 119019151 119018991 2.330000e-73 287
44 TraesCS4D01G200600 chr1B 76.752 585 89 25 4275 4827 322959096 322958527 3.020000e-72 283
45 TraesCS4D01G200600 chr1B 93.976 166 9 1 1912 2076 174839814 174839979 3.060000e-62 250
46 TraesCS4D01G200600 chr2A 83.612 299 49 0 4538 4836 605249428 605249130 1.080000e-71 281
47 TraesCS4D01G200600 chr2A 82.724 301 52 0 4538 4838 748496044 748496344 8.440000e-68 268
48 TraesCS4D01G200600 chr2A 82.667 300 52 0 4539 4838 111797692 111797991 3.040000e-67 267
49 TraesCS4D01G200600 chr2A 93.902 164 9 1 1914 2076 12003272 12003435 3.960000e-61 246
50 TraesCS4D01G200600 chr2B 92.442 172 9 4 1915 2084 171204428 171204597 5.120000e-60 243
51 TraesCS4D01G200600 chr2B 75.484 310 45 10 202 480 744341423 744341114 6.960000e-24 122
52 TraesCS4D01G200600 chr2B 75.161 310 46 12 202 480 774780144 774780453 3.240000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G200600 chr4D 347521108 347526223 5115 True 9448.000000 9448 100.000000 1 5116 1 chr4D.!!$R1 5115
1 TraesCS4D01G200600 chr4A 117888574 117892364 3790 False 1351.250000 2521 93.191500 1 4211 4 chr4A.!!$F1 4210
2 TraesCS4D01G200600 chr4B 428024866 428030354 5488 True 789.166667 2475 92.617833 1 4357 6 chr4B.!!$R3 4356
3 TraesCS4D01G200600 chr5D 510105085 510105680 595 False 496.000000 496 82.274000 4538 5114 1 chr5D.!!$F1 576
4 TraesCS4D01G200600 chr7B 388163879 388164480 601 True 468.000000 468 81.426000 4538 5114 1 chr7B.!!$R1 576
5 TraesCS4D01G200600 chr6A 23901319 23901877 558 False 451.000000 451 81.411000 4538 5114 1 chr6A.!!$F1 576
6 TraesCS4D01G200600 chr1A 484294516 484295126 610 False 303.500000 337 85.548000 4540 5114 2 chr1A.!!$F1 574
7 TraesCS4D01G200600 chr1D 223536265 223536889 624 True 313.000000 313 76.972000 4238 4827 1 chr1D.!!$R1 589
8 TraesCS4D01G200600 chr1B 322958527 322959096 569 True 283.000000 283 76.752000 4275 4827 1 chr1B.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 2307 1.017387 CAATAAAGCTGTCGGCCTCC 58.983 55.000 0.00 0.0 43.05 4.30 F
871 2694 1.073199 GGCTGGGTTGTGCTAGTGT 59.927 57.895 0.00 0.0 0.00 3.55 F
1480 3473 1.165270 GATTGTTGTTGGCTAGCGGT 58.835 50.000 9.00 0.0 0.00 5.68 F
2279 4286 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.0 42.61 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 4284 0.389426 GCGGTCAAAGTTAGCCTCGA 60.389 55.0 0.00 0.0 0.0 4.04 R
2278 4285 0.669318 TGCGGTCAAAGTTAGCCTCG 60.669 55.0 0.00 0.0 0.0 4.63 R
2281 4288 1.165270 ACATGCGGTCAAAGTTAGCC 58.835 50.0 0.00 0.0 0.0 3.93 R
4247 6280 0.035439 ATTGATCCCTTTGTCCGCGT 60.035 50.0 4.92 0.0 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.115446 TGTATTCAATTCCTCTGTCACCATC 58.885 40.000 0.00 0.00 0.00 3.51
78 79 3.922171 ATTCCTCTGTCACCATCCTTC 57.078 47.619 0.00 0.00 0.00 3.46
199 201 2.825264 GCCGAGGCCATAGCTCTT 59.175 61.111 5.01 0.00 39.73 2.85
269 271 1.753930 TGCCACAACATGCCTATCTG 58.246 50.000 0.00 0.00 0.00 2.90
319 322 7.254556 GCGATGATCATTCTTCTATTTGTGTGA 60.255 37.037 10.14 0.00 0.00 3.58
342 345 9.807649 GTGATGGTTTCTGATATTAAAATTGCT 57.192 29.630 0.00 0.00 0.00 3.91
376 379 1.428448 TTCGGTGATCTTCAAGCACG 58.572 50.000 0.00 0.00 45.41 5.34
394 2208 3.242123 GCACGCTCATTTGTTAGCTAGAC 60.242 47.826 0.00 0.00 36.56 2.59
468 2283 6.657541 GGGGAACTCTGTGTAATATTGTTGAA 59.342 38.462 0.00 0.00 0.00 2.69
486 2301 7.621832 TGTTGAAAAATCAATAAAGCTGTCG 57.378 32.000 0.00 0.00 31.79 4.35
492 2307 1.017387 CAATAAAGCTGTCGGCCTCC 58.983 55.000 0.00 0.00 43.05 4.30
597 2413 8.902806 TGACCAGACAAAATATTTGCTAATAGG 58.097 33.333 0.39 1.82 30.10 2.57
612 2428 8.540507 TTGCTAATAGGGCAATTATTGGTTAA 57.459 30.769 7.08 0.00 43.50 2.01
641 2458 5.813513 ACATTTTTCCTGGCAAAATCTCT 57.186 34.783 13.07 0.00 32.57 3.10
692 2509 3.663995 TCAGAAACCCGACGAAATGTA 57.336 42.857 0.00 0.00 0.00 2.29
695 2512 4.998672 TCAGAAACCCGACGAAATGTATTT 59.001 37.500 0.00 0.00 0.00 1.40
840 2657 4.263139 TGACGAAATCTGATTTGCGATG 57.737 40.909 26.36 13.68 31.47 3.84
859 2682 1.077068 TATTTTGGAGCGGGCTGGG 60.077 57.895 0.00 0.00 0.00 4.45
871 2694 1.073199 GGCTGGGTTGTGCTAGTGT 59.927 57.895 0.00 0.00 0.00 3.55
882 2705 2.022129 GCTAGTGTTCACGCACGCT 61.022 57.895 0.00 2.12 43.61 5.07
982 2816 1.242076 GAGCAGGAAAAAGCAGCAGA 58.758 50.000 0.00 0.00 0.00 4.26
1034 2869 2.989824 CGACCGTGACCTCCCTGT 60.990 66.667 0.00 0.00 0.00 4.00
1175 3010 2.351244 GCAGCCCAAAACCCTAGCC 61.351 63.158 0.00 0.00 0.00 3.93
1176 3011 1.682344 CAGCCCAAAACCCTAGCCC 60.682 63.158 0.00 0.00 0.00 5.19
1177 3012 1.857348 AGCCCAAAACCCTAGCCCT 60.857 57.895 0.00 0.00 0.00 5.19
1178 3013 1.682344 GCCCAAAACCCTAGCCCTG 60.682 63.158 0.00 0.00 0.00 4.45
1179 3014 1.682344 CCCAAAACCCTAGCCCTGC 60.682 63.158 0.00 0.00 0.00 4.85
1180 3015 1.682344 CCAAAACCCTAGCCCTGCC 60.682 63.158 0.00 0.00 0.00 4.85
1181 3016 2.046285 CAAAACCCTAGCCCTGCCG 61.046 63.158 0.00 0.00 0.00 5.69
1182 3017 3.938637 AAAACCCTAGCCCTGCCGC 62.939 63.158 0.00 0.00 0.00 6.53
1474 3467 5.203528 AGCCTATTATGATTGTTGTTGGCT 58.796 37.500 0.00 0.00 41.65 4.75
1480 3473 1.165270 GATTGTTGTTGGCTAGCGGT 58.835 50.000 9.00 0.00 0.00 5.68
1559 3561 5.184864 TGTTTTCGGTAAGCATGGATTTGAT 59.815 36.000 0.00 0.00 0.00 2.57
1595 3597 7.255381 GCAGGTATGAGAAATTAAGCATCACAT 60.255 37.037 0.00 0.00 0.00 3.21
1678 3683 6.627395 TGGATTATTATCAAACCGCGAAAT 57.373 33.333 8.23 0.00 32.09 2.17
1710 3715 8.068892 TGTAAAGGTTTCCTTAAGCAAAAGAA 57.931 30.769 0.00 0.00 43.92 2.52
1711 3716 8.532819 TGTAAAGGTTTCCTTAAGCAAAAGAAA 58.467 29.630 0.00 0.00 43.92 2.52
1712 3717 7.843490 AAAGGTTTCCTTAAGCAAAAGAAAC 57.157 32.000 18.47 18.47 43.92 2.78
1713 3718 6.538945 AGGTTTCCTTAAGCAAAAGAAACA 57.461 33.333 23.74 0.20 36.70 2.83
1821 3827 6.402550 GCATGTGAACTGTCCTGTAATGTTAG 60.403 42.308 0.00 0.00 0.00 2.34
1848 3854 4.554919 GCTTTAGTCTAGATCGCGATGTCA 60.555 45.833 29.09 10.15 0.00 3.58
1873 3879 6.073314 AGGCCCTATCGTGAACTATAGTTAA 58.927 40.000 18.03 8.42 38.56 2.01
1874 3880 6.724905 AGGCCCTATCGTGAACTATAGTTAAT 59.275 38.462 18.03 11.45 38.56 1.40
1875 3881 6.812160 GGCCCTATCGTGAACTATAGTTAATG 59.188 42.308 18.03 15.88 38.56 1.90
1876 3882 6.310711 GCCCTATCGTGAACTATAGTTAATGC 59.689 42.308 18.03 6.60 38.56 3.56
1916 3922 8.784043 TGCTGAATTCTTTTCTAACCTTTCTAC 58.216 33.333 7.05 0.00 0.00 2.59
1917 3923 9.004717 GCTGAATTCTTTTCTAACCTTTCTACT 57.995 33.333 7.05 0.00 0.00 2.57
1919 3925 9.503399 TGAATTCTTTTCTAACCTTTCTACTCC 57.497 33.333 7.05 0.00 0.00 3.85
1920 3926 8.865420 AATTCTTTTCTAACCTTTCTACTCCC 57.135 34.615 0.00 0.00 0.00 4.30
1921 3927 7.628501 TTCTTTTCTAACCTTTCTACTCCCT 57.371 36.000 0.00 0.00 0.00 4.20
1922 3928 7.242322 TCTTTTCTAACCTTTCTACTCCCTC 57.758 40.000 0.00 0.00 0.00 4.30
1923 3929 6.212993 TCTTTTCTAACCTTTCTACTCCCTCC 59.787 42.308 0.00 0.00 0.00 4.30
1924 3930 3.629087 TCTAACCTTTCTACTCCCTCCG 58.371 50.000 0.00 0.00 0.00 4.63
1925 3931 2.322339 AACCTTTCTACTCCCTCCGT 57.678 50.000 0.00 0.00 0.00 4.69
1926 3932 2.322339 ACCTTTCTACTCCCTCCGTT 57.678 50.000 0.00 0.00 0.00 4.44
1927 3933 2.177734 ACCTTTCTACTCCCTCCGTTC 58.822 52.381 0.00 0.00 0.00 3.95
1928 3934 1.481363 CCTTTCTACTCCCTCCGTTCC 59.519 57.143 0.00 0.00 0.00 3.62
1929 3935 2.458620 CTTTCTACTCCCTCCGTTCCT 58.541 52.381 0.00 0.00 0.00 3.36
1930 3936 3.626729 CCTTTCTACTCCCTCCGTTCCTA 60.627 52.174 0.00 0.00 0.00 2.94
1931 3937 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
1932 3938 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1933 3939 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1934 3940 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1935 3941 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1936 3942 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
1937 3943 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
1938 3944 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1939 3945 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1940 3946 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1941 3947 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1942 3948 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1943 3949 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1944 3950 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
1945 3951 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
1962 3968 8.871629 AGTCTTTCTAGAGATTTCACTAGTGA 57.128 34.615 21.74 21.74 38.03 3.41
1963 3969 8.736244 AGTCTTTCTAGAGATTTCACTAGTGAC 58.264 37.037 25.13 13.90 39.66 3.67
1964 3970 8.736244 GTCTTTCTAGAGATTTCACTAGTGACT 58.264 37.037 25.13 18.40 39.66 3.41
1965 3971 9.961264 TCTTTCTAGAGATTTCACTAGTGACTA 57.039 33.333 25.13 19.36 39.66 2.59
1966 3972 9.997482 CTTTCTAGAGATTTCACTAGTGACTAC 57.003 37.037 25.13 17.25 39.66 2.73
1967 3973 9.516546 TTTCTAGAGATTTCACTAGTGACTACA 57.483 33.333 25.13 8.01 39.66 2.74
1968 3974 9.688091 TTCTAGAGATTTCACTAGTGACTACAT 57.312 33.333 25.13 14.14 39.66 2.29
1971 3977 7.921787 AGAGATTTCACTAGTGACTACATACG 58.078 38.462 25.13 0.00 39.66 3.06
1972 3978 7.769507 AGAGATTTCACTAGTGACTACATACGA 59.230 37.037 25.13 4.52 39.66 3.43
1973 3979 8.277490 AGATTTCACTAGTGACTACATACGAA 57.723 34.615 25.13 13.38 39.66 3.85
1974 3980 8.737175 AGATTTCACTAGTGACTACATACGAAA 58.263 33.333 25.13 12.68 39.66 3.46
1975 3981 8.684973 ATTTCACTAGTGACTACATACGAAAC 57.315 34.615 25.13 0.00 39.66 2.78
1976 3982 6.806388 TCACTAGTGACTACATACGAAACA 57.194 37.500 21.74 0.00 34.14 2.83
1977 3983 7.205737 TCACTAGTGACTACATACGAAACAA 57.794 36.000 21.74 0.00 34.14 2.83
1978 3984 7.650890 TCACTAGTGACTACATACGAAACAAA 58.349 34.615 21.74 0.00 34.14 2.83
1979 3985 8.136800 TCACTAGTGACTACATACGAAACAAAA 58.863 33.333 21.74 0.00 34.14 2.44
1980 3986 8.922676 CACTAGTGACTACATACGAAACAAAAT 58.077 33.333 18.45 0.00 0.00 1.82
1981 3987 8.922676 ACTAGTGACTACATACGAAACAAAATG 58.077 33.333 0.00 0.00 0.00 2.32
1982 3988 7.956420 AGTGACTACATACGAAACAAAATGA 57.044 32.000 0.00 0.00 0.00 2.57
1983 3989 8.018677 AGTGACTACATACGAAACAAAATGAG 57.981 34.615 0.00 0.00 0.00 2.90
1984 3990 7.656137 AGTGACTACATACGAAACAAAATGAGT 59.344 33.333 0.00 0.00 0.00 3.41
1985 3991 7.740346 GTGACTACATACGAAACAAAATGAGTG 59.260 37.037 0.00 0.00 0.00 3.51
1986 3992 7.654116 TGACTACATACGAAACAAAATGAGTGA 59.346 33.333 0.00 0.00 0.00 3.41
1987 3993 8.373048 ACTACATACGAAACAAAATGAGTGAA 57.627 30.769 0.00 0.00 0.00 3.18
1988 3994 8.999431 ACTACATACGAAACAAAATGAGTGAAT 58.001 29.630 0.00 0.00 0.00 2.57
1989 3995 9.478019 CTACATACGAAACAAAATGAGTGAATC 57.522 33.333 0.00 0.00 0.00 2.52
1990 3996 8.099364 ACATACGAAACAAAATGAGTGAATCT 57.901 30.769 0.00 0.00 0.00 2.40
1991 3997 9.214957 ACATACGAAACAAAATGAGTGAATCTA 57.785 29.630 0.00 0.00 0.00 1.98
1992 3998 9.478019 CATACGAAACAAAATGAGTGAATCTAC 57.522 33.333 0.00 0.00 0.00 2.59
1993 3999 7.490962 ACGAAACAAAATGAGTGAATCTACA 57.509 32.000 0.00 0.00 0.00 2.74
1994 4000 7.352739 ACGAAACAAAATGAGTGAATCTACAC 58.647 34.615 0.00 0.00 40.60 2.90
2018 4024 8.338072 ACTCTAAAGTGGTCTATATACATCCG 57.662 38.462 0.00 0.00 33.32 4.18
2019 4025 7.943447 ACTCTAAAGTGGTCTATATACATCCGT 59.057 37.037 0.00 0.00 33.32 4.69
2020 4026 9.445878 CTCTAAAGTGGTCTATATACATCCGTA 57.554 37.037 0.00 0.00 0.00 4.02
2021 4027 9.970553 TCTAAAGTGGTCTATATACATCCGTAT 57.029 33.333 0.00 0.00 41.34 3.06
2035 4041 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
2036 4042 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
2037 4043 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
2038 4044 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
2039 4045 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
2040 4046 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
2041 4047 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
2042 4048 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
2043 4049 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
2047 4053 9.706691 TGTAGTTTGTAGTGGAATCTCTAAAAG 57.293 33.333 0.00 0.00 0.00 2.27
2048 4054 9.152595 GTAGTTTGTAGTGGAATCTCTAAAAGG 57.847 37.037 0.00 0.00 0.00 3.11
2049 4055 7.974504 AGTTTGTAGTGGAATCTCTAAAAGGA 58.025 34.615 0.00 0.00 0.00 3.36
2050 4056 7.878644 AGTTTGTAGTGGAATCTCTAAAAGGAC 59.121 37.037 0.00 0.00 0.00 3.85
2051 4057 7.554959 TTGTAGTGGAATCTCTAAAAGGACT 57.445 36.000 0.00 0.00 0.00 3.85
2052 4058 7.554959 TGTAGTGGAATCTCTAAAAGGACTT 57.445 36.000 0.00 0.00 0.00 3.01
2053 4059 8.660295 TGTAGTGGAATCTCTAAAAGGACTTA 57.340 34.615 0.00 0.00 0.00 2.24
2054 4060 9.268282 TGTAGTGGAATCTCTAAAAGGACTTAT 57.732 33.333 0.00 0.00 0.00 1.73
2068 4074 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
2069 4075 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
2070 4076 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
2071 4077 5.541484 GGACTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
2072 4078 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
2073 4079 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2074 4080 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2204 4211 7.175641 CCCAATACATCCCATCTCTAATGAAAC 59.824 40.741 0.00 0.00 0.00 2.78
2208 4215 9.872684 ATACATCCCATCTCTAATGAAACATTT 57.127 29.630 2.40 0.00 0.00 2.32
2243 4250 9.750783 TCCTACTATGGTATTTACATCTACTCC 57.249 37.037 0.00 0.00 0.00 3.85
2246 4253 8.653036 ACTATGGTATTTACATCTACTCCCTC 57.347 38.462 0.00 0.00 0.00 4.30
2247 4254 8.457757 ACTATGGTATTTACATCTACTCCCTCT 58.542 37.037 0.00 0.00 0.00 3.69
2250 4257 8.880991 TGGTATTTACATCTACTCCCTCTATC 57.119 38.462 0.00 0.00 0.00 2.08
2251 4258 7.894364 TGGTATTTACATCTACTCCCTCTATCC 59.106 40.741 0.00 0.00 0.00 2.59
2253 4260 9.482175 GTATTTACATCTACTCCCTCTATCCAT 57.518 37.037 0.00 0.00 0.00 3.41
2264 4271 7.714500 ACTCCCTCTATCCATATATATAGGGC 58.286 42.308 17.00 0.00 42.02 5.19
2265 4272 7.057732 TCCCTCTATCCATATATATAGGGCC 57.942 44.000 17.00 0.00 42.02 5.80
2266 4273 6.810442 TCCCTCTATCCATATATATAGGGCCT 59.190 42.308 17.00 12.58 42.02 5.19
2267 4274 7.979410 TCCCTCTATCCATATATATAGGGCCTA 59.021 40.741 17.16 17.16 42.02 3.93
2268 4275 8.633724 CCCTCTATCCATATATATAGGGCCTAA 58.366 40.741 18.91 7.61 38.39 2.69
2271 4278 9.494055 TCTATCCATATATATAGGGCCTAATGC 57.506 37.037 18.91 0.00 34.36 3.56
2272 4279 6.605471 TCCATATATATAGGGCCTAATGCG 57.395 41.667 18.91 10.04 42.61 4.73
2273 4280 6.082031 TCCATATATATAGGGCCTAATGCGT 58.918 40.000 18.91 2.76 42.61 5.24
2274 4281 6.557253 TCCATATATATAGGGCCTAATGCGTT 59.443 38.462 18.91 1.94 42.61 4.84
2275 4282 7.071950 TCCATATATATAGGGCCTAATGCGTTT 59.928 37.037 18.91 1.12 42.61 3.60
2276 4283 7.719633 CCATATATATAGGGCCTAATGCGTTTT 59.280 37.037 18.91 0.30 42.61 2.43
2277 4284 9.120538 CATATATATAGGGCCTAATGCGTTTTT 57.879 33.333 18.91 0.00 42.61 1.94
2278 4285 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
2279 4286 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
2280 4287 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
2281 4288 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
2282 4289 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
2283 4290 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
2284 4291 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
2285 4292 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
2286 4293 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
2287 4294 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
2288 4295 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
2289 4296 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
2290 4297 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
2291 4298 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
2292 4299 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
2293 4300 4.209112 CGTTTTTCGAGGCTAACTTTGAC 58.791 43.478 0.00 0.00 42.86 3.18
2294 4301 4.534168 GTTTTTCGAGGCTAACTTTGACC 58.466 43.478 0.00 0.00 0.00 4.02
2295 4302 2.074547 TTCGAGGCTAACTTTGACCG 57.925 50.000 0.00 0.00 0.00 4.79
2296 4303 0.389426 TCGAGGCTAACTTTGACCGC 60.389 55.000 0.00 0.00 0.00 5.68
2297 4304 0.669318 CGAGGCTAACTTTGACCGCA 60.669 55.000 0.00 0.00 0.00 5.69
2298 4305 1.739067 GAGGCTAACTTTGACCGCAT 58.261 50.000 0.00 0.00 0.00 4.73
2299 4306 1.398390 GAGGCTAACTTTGACCGCATG 59.602 52.381 0.00 0.00 0.00 4.06
2300 4307 1.165270 GGCTAACTTTGACCGCATGT 58.835 50.000 0.00 0.00 0.00 3.21
2301 4308 1.539827 GGCTAACTTTGACCGCATGTT 59.460 47.619 0.00 0.00 0.00 2.71
2302 4309 2.745281 GGCTAACTTTGACCGCATGTTA 59.255 45.455 0.00 0.00 0.00 2.41
2303 4310 3.181510 GGCTAACTTTGACCGCATGTTAG 60.182 47.826 0.00 0.00 40.46 2.34
2304 4311 3.682858 GCTAACTTTGACCGCATGTTAGA 59.317 43.478 13.27 0.00 40.23 2.10
2305 4312 4.201724 GCTAACTTTGACCGCATGTTAGAG 60.202 45.833 13.27 0.00 40.23 2.43
2306 4313 2.076863 ACTTTGACCGCATGTTAGAGC 58.923 47.619 0.00 0.00 0.00 4.09
2307 4314 2.076100 CTTTGACCGCATGTTAGAGCA 58.924 47.619 0.00 0.00 0.00 4.26
2308 4315 2.177394 TTGACCGCATGTTAGAGCAA 57.823 45.000 0.00 0.00 0.00 3.91
2309 4316 2.401583 TGACCGCATGTTAGAGCAAT 57.598 45.000 0.00 0.00 0.00 3.56
2310 4317 3.535280 TGACCGCATGTTAGAGCAATA 57.465 42.857 0.00 0.00 0.00 1.90
2311 4318 3.867857 TGACCGCATGTTAGAGCAATAA 58.132 40.909 0.00 0.00 0.00 1.40
2312 4319 4.450976 TGACCGCATGTTAGAGCAATAAT 58.549 39.130 0.00 0.00 0.00 1.28
2313 4320 5.606505 TGACCGCATGTTAGAGCAATAATA 58.393 37.500 0.00 0.00 0.00 0.98
2314 4321 6.230472 TGACCGCATGTTAGAGCAATAATAT 58.770 36.000 0.00 0.00 0.00 1.28
2315 4322 7.382898 TGACCGCATGTTAGAGCAATAATATA 58.617 34.615 0.00 0.00 0.00 0.86
2316 4323 8.040727 TGACCGCATGTTAGAGCAATAATATAT 58.959 33.333 0.00 0.00 0.00 0.86
2317 4324 8.201554 ACCGCATGTTAGAGCAATAATATATG 57.798 34.615 0.00 0.00 0.00 1.78
2318 4325 8.040727 ACCGCATGTTAGAGCAATAATATATGA 58.959 33.333 0.00 0.00 0.00 2.15
2319 4326 8.331022 CCGCATGTTAGAGCAATAATATATGAC 58.669 37.037 0.00 0.00 0.00 3.06
2320 4327 8.872845 CGCATGTTAGAGCAATAATATATGACA 58.127 33.333 0.00 0.00 0.00 3.58
2324 4331 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
2327 4334 8.859236 AGAGCAATAATATATGACATGCAAGT 57.141 30.769 10.78 0.00 34.89 3.16
2328 4335 9.293404 AGAGCAATAATATATGACATGCAAGTT 57.707 29.630 10.78 0.00 34.89 2.66
2336 4343 4.771590 ATGACATGCAAGTTACACAAGG 57.228 40.909 0.00 0.00 0.00 3.61
2337 4344 2.293122 TGACATGCAAGTTACACAAGGC 59.707 45.455 0.00 0.00 0.00 4.35
2338 4345 2.293122 GACATGCAAGTTACACAAGGCA 59.707 45.455 0.00 0.00 35.54 4.75
2339 4346 2.892852 ACATGCAAGTTACACAAGGCAT 59.107 40.909 0.00 0.00 42.20 4.40
2340 4347 4.078537 ACATGCAAGTTACACAAGGCATA 58.921 39.130 0.00 0.00 39.73 3.14
2341 4348 4.082787 ACATGCAAGTTACACAAGGCATAC 60.083 41.667 0.00 0.00 39.73 2.39
2342 4349 2.817258 TGCAAGTTACACAAGGCATACC 59.183 45.455 0.00 0.00 0.00 2.73
2343 4350 2.159572 GCAAGTTACACAAGGCATACCG 60.160 50.000 0.00 0.00 42.76 4.02
2344 4351 3.071479 CAAGTTACACAAGGCATACCGT 58.929 45.455 0.00 0.00 42.76 4.83
2345 4352 2.968675 AGTTACACAAGGCATACCGTC 58.031 47.619 0.00 0.00 42.76 4.79
2346 4353 2.300723 AGTTACACAAGGCATACCGTCA 59.699 45.455 0.00 0.00 42.76 4.35
2347 4354 3.068560 GTTACACAAGGCATACCGTCAA 58.931 45.455 0.00 0.00 42.76 3.18
2348 4355 2.264005 ACACAAGGCATACCGTCAAA 57.736 45.000 0.00 0.00 42.76 2.69
2349 4356 2.790433 ACACAAGGCATACCGTCAAAT 58.210 42.857 0.00 0.00 42.76 2.32
2350 4357 3.153919 ACACAAGGCATACCGTCAAATT 58.846 40.909 0.00 0.00 42.76 1.82
2351 4358 3.190535 ACACAAGGCATACCGTCAAATTC 59.809 43.478 0.00 0.00 42.76 2.17
2352 4359 2.418628 ACAAGGCATACCGTCAAATTCG 59.581 45.455 0.00 0.00 42.76 3.34
2353 4360 2.396590 AGGCATACCGTCAAATTCGT 57.603 45.000 0.00 0.00 42.76 3.85
2354 4361 3.530265 AGGCATACCGTCAAATTCGTA 57.470 42.857 0.00 0.00 42.76 3.43
2355 4362 3.192466 AGGCATACCGTCAAATTCGTAC 58.808 45.455 0.00 0.00 42.76 3.67
2356 4363 2.034339 GGCATACCGTCAAATTCGTACG 60.034 50.000 9.53 9.53 36.42 3.67
2357 4364 2.599973 GCATACCGTCAAATTCGTACGT 59.400 45.455 16.05 0.00 34.90 3.57
2358 4365 3.540744 GCATACCGTCAAATTCGTACGTG 60.541 47.826 16.05 6.20 34.90 4.49
2359 4366 2.420628 ACCGTCAAATTCGTACGTGA 57.579 45.000 16.05 8.71 34.90 4.35
2360 4367 2.741612 ACCGTCAAATTCGTACGTGAA 58.258 42.857 16.05 3.23 34.90 3.18
2361 4368 3.122297 ACCGTCAAATTCGTACGTGAAA 58.878 40.909 16.05 2.41 34.90 2.69
2362 4369 3.182972 ACCGTCAAATTCGTACGTGAAAG 59.817 43.478 16.05 8.52 34.90 2.62
2363 4370 3.426191 CCGTCAAATTCGTACGTGAAAGA 59.574 43.478 16.05 6.76 34.90 2.52
2364 4371 4.084952 CCGTCAAATTCGTACGTGAAAGAA 60.085 41.667 16.05 0.78 34.90 2.52
2365 4372 5.064367 CGTCAAATTCGTACGTGAAAGAAG 58.936 41.667 16.05 8.00 32.16 2.85
2366 4373 4.839174 GTCAAATTCGTACGTGAAAGAAGC 59.161 41.667 16.05 0.00 0.00 3.86
2367 4374 4.748102 TCAAATTCGTACGTGAAAGAAGCT 59.252 37.500 16.05 0.00 0.00 3.74
2368 4375 5.235616 TCAAATTCGTACGTGAAAGAAGCTT 59.764 36.000 16.05 0.00 0.00 3.74
2369 4376 4.905412 ATTCGTACGTGAAAGAAGCTTC 57.095 40.909 19.11 19.11 0.00 3.86
2370 4377 2.669364 TCGTACGTGAAAGAAGCTTCC 58.331 47.619 22.81 8.49 0.00 3.46
2371 4378 2.034939 TCGTACGTGAAAGAAGCTTCCA 59.965 45.455 22.81 11.12 0.00 3.53
2372 4379 2.798283 CGTACGTGAAAGAAGCTTCCAA 59.202 45.455 22.81 3.43 0.00 3.53
2373 4380 3.432252 CGTACGTGAAAGAAGCTTCCAAT 59.568 43.478 22.81 9.33 0.00 3.16
2374 4381 3.904136 ACGTGAAAGAAGCTTCCAATG 57.096 42.857 22.81 13.05 0.00 2.82
2375 4382 3.476552 ACGTGAAAGAAGCTTCCAATGA 58.523 40.909 22.81 0.77 0.00 2.57
2376 4383 4.074970 ACGTGAAAGAAGCTTCCAATGAT 58.925 39.130 22.81 0.00 0.00 2.45
2377 4384 5.245531 ACGTGAAAGAAGCTTCCAATGATA 58.754 37.500 22.81 0.84 0.00 2.15
2378 4385 5.882557 ACGTGAAAGAAGCTTCCAATGATAT 59.117 36.000 22.81 0.00 0.00 1.63
2379 4386 7.047891 ACGTGAAAGAAGCTTCCAATGATATA 58.952 34.615 22.81 0.00 0.00 0.86
2380 4387 7.552687 ACGTGAAAGAAGCTTCCAATGATATAA 59.447 33.333 22.81 0.00 0.00 0.98
2381 4388 8.562892 CGTGAAAGAAGCTTCCAATGATATAAT 58.437 33.333 22.81 0.00 0.00 1.28
2434 4441 9.905713 TTAATCTTATCAATAGTCAAAGGCAGT 57.094 29.630 0.00 0.00 0.00 4.40
2435 4442 8.443953 AATCTTATCAATAGTCAAAGGCAGTC 57.556 34.615 0.00 0.00 0.00 3.51
2436 4443 7.187824 TCTTATCAATAGTCAAAGGCAGTCT 57.812 36.000 0.00 0.00 0.00 3.24
2437 4444 7.624549 TCTTATCAATAGTCAAAGGCAGTCTT 58.375 34.615 0.00 0.00 37.28 3.01
2438 4445 7.550551 TCTTATCAATAGTCAAAGGCAGTCTTG 59.449 37.037 0.00 0.00 35.55 3.02
2439 4446 5.227569 TCAATAGTCAAAGGCAGTCTTGA 57.772 39.130 0.00 0.00 35.55 3.02
2440 4447 5.620206 TCAATAGTCAAAGGCAGTCTTGAA 58.380 37.500 0.00 0.00 35.55 2.69
2441 4448 6.061441 TCAATAGTCAAAGGCAGTCTTGAAA 58.939 36.000 0.00 0.00 35.55 2.69
2442 4449 6.545666 TCAATAGTCAAAGGCAGTCTTGAAAA 59.454 34.615 0.00 0.00 35.55 2.29
2443 4450 4.639135 AGTCAAAGGCAGTCTTGAAAAC 57.361 40.909 0.00 0.00 35.55 2.43
2444 4451 3.065371 AGTCAAAGGCAGTCTTGAAAACG 59.935 43.478 0.00 0.00 35.55 3.60
2445 4452 2.119457 CAAAGGCAGTCTTGAAAACGC 58.881 47.619 0.00 0.00 35.55 4.84
2446 4453 1.388547 AAGGCAGTCTTGAAAACGCA 58.611 45.000 0.00 0.00 33.76 5.24
2447 4454 1.609208 AGGCAGTCTTGAAAACGCAT 58.391 45.000 0.00 0.00 0.00 4.73
2448 4455 1.956477 AGGCAGTCTTGAAAACGCATT 59.044 42.857 0.00 0.00 0.00 3.56
2449 4456 3.146066 AGGCAGTCTTGAAAACGCATTA 58.854 40.909 0.00 0.00 0.00 1.90
2450 4457 3.058224 AGGCAGTCTTGAAAACGCATTAC 60.058 43.478 0.00 0.00 0.00 1.89
2451 4458 7.756138 AAGGCAGTCTTGAAAACGCATTACG 62.756 44.000 0.00 0.00 40.32 3.18
2513 4520 7.972277 ACTAAGCAGACAAGATTTGCAAATATG 59.028 33.333 24.15 24.63 40.22 1.78
2572 4579 7.803724 ACTTTATTAACAGTTAAGTTCAGGCG 58.196 34.615 11.41 0.00 33.07 5.52
2587 4594 7.391148 AGTTCAGGCGTGTCATATTTATTTT 57.609 32.000 6.26 0.00 0.00 1.82
2687 4696 5.067273 TGGTGAAAGAATGTTACCGTTCAT 58.933 37.500 0.00 0.00 38.77 2.57
2702 4711 4.256920 CCGTTCATCACTTCTTTCTCCAT 58.743 43.478 0.00 0.00 0.00 3.41
2745 4754 8.974408 CCAAATATCTATGAAACATTGTGCATG 58.026 33.333 12.96 0.00 39.07 4.06
2763 4772 5.292671 GCATGTCTTATGCATACATCTGG 57.707 43.478 5.74 0.00 44.00 3.86
2777 4786 2.848694 ACATCTGGAATGACTGGACCAT 59.151 45.455 0.00 0.00 0.00 3.55
2808 4817 1.463674 AATGGGCTCGATTCCAACAC 58.536 50.000 10.33 0.00 36.54 3.32
2813 4822 2.159379 GGGCTCGATTCCAACACAATTC 60.159 50.000 6.25 0.00 0.00 2.17
2846 4856 4.794248 TGACAATCGTTATACATGCTGC 57.206 40.909 0.00 0.00 0.00 5.25
2863 4873 7.774134 ACATGCTGCATTATTTAAACTGATCA 58.226 30.769 13.38 0.00 0.00 2.92
2888 4898 3.994392 AGTACATGAACTGGTTAGCAACG 59.006 43.478 0.00 0.00 0.00 4.10
2928 4938 2.479837 TGTTACAGTGGAAACTCAGCG 58.520 47.619 10.75 0.00 0.00 5.18
2932 4942 1.143305 CAGTGGAAACTCAGCGTCAG 58.857 55.000 0.00 0.00 0.00 3.51
2948 4958 4.098196 AGCGTCAGTCTAGTTAAGGGAATC 59.902 45.833 0.00 0.00 0.00 2.52
2966 4976 7.643123 AGGGAATCCTTCAATATTAGTGTGTT 58.357 34.615 0.00 0.00 41.56 3.32
3006 5016 1.355381 TGAATGAGGTGTTCCCATGCT 59.645 47.619 0.00 0.00 34.66 3.79
3066 5078 2.831685 TGGTTGATCTGTTGTACGCT 57.168 45.000 0.00 0.00 0.00 5.07
3068 5080 3.472652 TGGTTGATCTGTTGTACGCTTT 58.527 40.909 0.00 0.00 0.00 3.51
3069 5081 3.880490 TGGTTGATCTGTTGTACGCTTTT 59.120 39.130 0.00 0.00 0.00 2.27
3070 5082 4.219033 GGTTGATCTGTTGTACGCTTTTG 58.781 43.478 0.00 0.00 0.00 2.44
3071 5083 4.261031 GGTTGATCTGTTGTACGCTTTTGT 60.261 41.667 0.00 0.00 0.00 2.83
3077 5089 8.132362 TGATCTGTTGTACGCTTTTGTTATTTT 58.868 29.630 0.00 0.00 0.00 1.82
3231 5243 6.072728 TGTGATGCACTTGTATGTTCTTTACC 60.073 38.462 0.00 0.00 35.11 2.85
3232 5244 6.000840 TGATGCACTTGTATGTTCTTTACCA 58.999 36.000 0.00 0.00 0.00 3.25
3419 5431 0.305922 GTAGATGAATGCGGCAGTGC 59.694 55.000 8.01 6.55 0.00 4.40
3444 5460 2.626266 GTCTTTTGACCGGAACCCAAAT 59.374 45.455 9.46 0.00 43.37 2.32
3503 5522 0.611618 TACCATGCCAGGTTTGCAGG 60.612 55.000 2.22 0.00 42.92 4.85
3620 5640 6.198216 GCTTCATGTTTGTTGTTGTAATTCGT 59.802 34.615 0.00 0.00 0.00 3.85
3644 5664 1.292242 TCTTCCTCCTGCCCTCTGTAT 59.708 52.381 0.00 0.00 0.00 2.29
3645 5665 2.518407 TCTTCCTCCTGCCCTCTGTATA 59.482 50.000 0.00 0.00 0.00 1.47
3646 5666 3.052109 TCTTCCTCCTGCCCTCTGTATAA 60.052 47.826 0.00 0.00 0.00 0.98
3672 5692 1.836999 AACACAGGATGCGGCTACCA 61.837 55.000 15.57 0.00 42.53 3.25
3712 5733 2.434336 GGAAAACAGTCCCTGCCTTTTT 59.566 45.455 0.00 0.00 34.37 1.94
3804 5829 8.820933 CGCTGTTATATATCCCATAACATGAAG 58.179 37.037 0.00 1.86 44.00 3.02
3839 5864 0.965866 TTCTCGCAGGGTCGTCTCAT 60.966 55.000 0.00 0.00 0.00 2.90
3896 5921 3.556775 TGTACAAGACTAACAACGCCAAC 59.443 43.478 0.00 0.00 0.00 3.77
4029 6055 1.272769 GGACTTCCTTGCTGTACTCGT 59.727 52.381 0.00 0.00 0.00 4.18
4051 6080 1.399791 GGCATAGTCTGTTTGCTGCTC 59.600 52.381 0.00 0.00 36.62 4.26
4139 6172 6.128902 CCATGTACTCGTGTCTGTTTAGTTTC 60.129 42.308 0.00 0.00 0.00 2.78
4167 6200 4.320667 TGTATTGTTCGTTTCAGATGCG 57.679 40.909 0.00 0.00 0.00 4.73
4215 6248 0.461548 TCTGGTAAGCGCATCTCCAG 59.538 55.000 24.49 24.49 44.69 3.86
4217 6250 1.153369 GGTAAGCGCATCTCCAGCA 60.153 57.895 11.47 0.00 0.00 4.41
4226 6259 1.001641 ATCTCCAGCAGCAACCCAC 60.002 57.895 0.00 0.00 0.00 4.61
4245 6278 3.922240 CCACAAAAATCTTTCTGCATCCG 59.078 43.478 0.00 0.00 0.00 4.18
4247 6280 5.335583 CCACAAAAATCTTTCTGCATCCGTA 60.336 40.000 0.00 0.00 0.00 4.02
4265 6298 0.609151 TACGCGGACAAAGGGATCAA 59.391 50.000 12.47 0.00 0.00 2.57
4340 6374 6.931243 TCAAACTTTTTACAACAAACGGAC 57.069 33.333 0.00 0.00 0.00 4.79
4347 6381 7.328982 ACTTTTTACAACAAACGGACGAAATTT 59.671 29.630 0.00 0.00 0.00 1.82
4368 6402 2.928694 GTGCGAACACGATTGGATTTT 58.071 42.857 0.00 0.00 36.98 1.82
4369 6403 4.073169 GTGCGAACACGATTGGATTTTA 57.927 40.909 0.00 0.00 36.98 1.52
4370 6404 3.844099 GTGCGAACACGATTGGATTTTAC 59.156 43.478 0.00 0.00 36.98 2.01
4372 6406 4.023963 TGCGAACACGATTGGATTTTACAA 60.024 37.500 0.00 0.00 0.00 2.41
4375 6409 6.088883 GCGAACACGATTGGATTTTACAAAAT 59.911 34.615 0.00 0.00 41.06 1.82
4398 6433 9.976511 AAATCATGATGGATTCATACAAACATC 57.023 29.630 9.46 0.00 43.40 3.06
4399 6434 7.193377 TCATGATGGATTCATACAAACATCG 57.807 36.000 0.00 0.00 43.40 3.84
4407 6442 4.530094 TCATACAAACATCGCGGATTTC 57.470 40.909 6.13 0.00 0.00 2.17
4417 6452 6.612247 ACATCGCGGATTTCATTACATTTA 57.388 33.333 6.13 0.00 0.00 1.40
4459 6504 2.290287 ATATCCTATGGCGGCGGCA 61.290 57.895 37.75 37.75 43.52 5.69
4460 6505 2.521958 ATATCCTATGGCGGCGGCAC 62.522 60.000 38.44 6.34 41.84 5.01
4475 6520 4.003788 CACCCGACGTCCAAGCCT 62.004 66.667 10.58 0.00 0.00 4.58
4480 6525 1.594293 CGACGTCCAAGCCTGTGTT 60.594 57.895 10.58 0.00 0.00 3.32
4488 6533 0.179020 CAAGCCTGTGTTGTCCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
4490 6535 0.326264 AGCCTGTGTTGTCCTCCATC 59.674 55.000 0.00 0.00 0.00 3.51
4492 6537 1.947678 GCCTGTGTTGTCCTCCATCTG 60.948 57.143 0.00 0.00 0.00 2.90
4503 6548 0.467384 CTCCATCTGCCGTCTCCATT 59.533 55.000 0.00 0.00 0.00 3.16
4504 6549 0.911769 TCCATCTGCCGTCTCCATTT 59.088 50.000 0.00 0.00 0.00 2.32
4508 6553 0.035152 TCTGCCGTCTCCATTTGCAT 60.035 50.000 0.00 0.00 0.00 3.96
4509 6554 0.813184 CTGCCGTCTCCATTTGCATT 59.187 50.000 0.00 0.00 0.00 3.56
4511 6556 0.810648 GCCGTCTCCATTTGCATTGA 59.189 50.000 0.00 0.00 0.00 2.57
4518 6563 5.277490 CGTCTCCATTTGCATTGACGATAAT 60.277 40.000 14.04 0.00 46.58 1.28
4519 6564 6.498304 GTCTCCATTTGCATTGACGATAATT 58.502 36.000 0.00 0.00 0.00 1.40
4520 6565 6.974622 GTCTCCATTTGCATTGACGATAATTT 59.025 34.615 0.00 0.00 0.00 1.82
4574 6647 3.156714 TGGGACACAAGGCATCGT 58.843 55.556 0.00 0.00 0.00 3.73
4575 6648 1.454104 TGGGACACAAGGCATCGTT 59.546 52.632 0.00 0.00 0.00 3.85
4619 6692 1.186267 GGAGGAGTCCACGACCTGTT 61.186 60.000 12.86 0.00 43.31 3.16
4682 6755 1.120530 AGTGTTGTCTTCGTCCCACT 58.879 50.000 0.00 0.00 0.00 4.00
4685 6758 0.106149 GTTGTCTTCGTCCCACTGGT 59.894 55.000 0.00 0.00 0.00 4.00
4690 6763 4.608774 TCGTCCCACTGGTCCGGT 62.609 66.667 0.00 0.00 0.00 5.28
4706 6779 0.665068 CGGTTGATGGTTCGTCGACA 60.665 55.000 17.16 0.00 35.95 4.35
4761 6834 1.737735 CGATCACCTGCAACTGCGA 60.738 57.895 0.00 0.00 45.83 5.10
4764 6837 0.608130 ATCACCTGCAACTGCGACTA 59.392 50.000 0.00 0.00 45.83 2.59
4792 6865 4.329545 GCTTCCCGGTGAGTGGCA 62.330 66.667 0.00 0.00 0.00 4.92
4812 6885 1.639298 GCTTGAGCGCGGAAGACATT 61.639 55.000 21.30 0.00 0.00 2.71
4880 6988 0.397816 AGATCTGGCCCTTCGCTAGT 60.398 55.000 0.00 0.00 45.87 2.57
4918 7026 3.143728 GGAACAGGTTGTACCGATGTTT 58.856 45.455 5.34 0.00 44.90 2.83
4950 7058 2.099652 CTGGAACACCGACAGAGGCA 62.100 60.000 0.00 0.00 34.21 4.75
5115 7224 4.463879 CTCGGGTGAGCTGGCCAG 62.464 72.222 29.34 29.34 34.96 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 3.415212 TGATTTGTCAAGCTCAGGAAGG 58.585 45.455 0.00 0.00 0.00 3.46
78 79 2.490509 TGCATGATTTGTCAAGCTCAGG 59.509 45.455 0.00 7.24 35.61 3.86
199 201 2.288666 GCCAAATGAATAGCTCACCGA 58.711 47.619 0.00 0.00 36.69 4.69
209 211 7.225725 TCTTTCTTTTCCAATGCCAAATGAAT 58.774 30.769 5.62 0.00 30.25 2.57
269 271 2.996631 AGAATGGATCTTCTGCACCAC 58.003 47.619 0.00 0.00 33.39 4.16
342 345 1.202879 ACCGAATTGAAGGCACCAGAA 60.203 47.619 0.00 0.00 0.00 3.02
376 379 6.487689 ACAAAGTCTAGCTAACAAATGAGC 57.512 37.500 0.00 0.00 39.08 4.26
394 2208 9.282247 GAAATGACTAACTGAATGCATACAAAG 57.718 33.333 0.00 0.00 0.00 2.77
468 2283 3.763897 AGGCCGACAGCTTTATTGATTTT 59.236 39.130 0.00 0.00 43.05 1.82
473 2288 1.017387 GGAGGCCGACAGCTTTATTG 58.983 55.000 0.00 0.00 43.05 1.90
502 2318 9.896263 TGTTATGGGTTTTAATAAAAGAACGAC 57.104 29.630 0.00 0.00 0.00 4.34
573 2389 7.201911 GCCCTATTAGCAAATATTTTGTCTGGT 60.202 37.037 0.00 0.00 0.00 4.00
612 2428 9.964303 GATTTTGCCAGGAAAAATGTTTATTTT 57.036 25.926 21.57 0.00 45.82 1.82
670 2487 4.196626 ACATTTCGTCGGGTTTCTGATA 57.803 40.909 0.00 0.00 0.00 2.15
671 2488 3.053831 ACATTTCGTCGGGTTTCTGAT 57.946 42.857 0.00 0.00 0.00 2.90
672 2489 2.536761 ACATTTCGTCGGGTTTCTGA 57.463 45.000 0.00 0.00 0.00 3.27
806 2623 8.771920 TCAGATTTCGTCATCTTAGCTAAAAA 57.228 30.769 7.74 3.86 30.50 1.94
807 2624 8.948631 ATCAGATTTCGTCATCTTAGCTAAAA 57.051 30.769 7.74 0.00 30.50 1.52
808 2625 8.948631 AATCAGATTTCGTCATCTTAGCTAAA 57.051 30.769 7.74 0.00 30.50 1.85
809 2626 8.820933 CAAATCAGATTTCGTCATCTTAGCTAA 58.179 33.333 5.32 5.94 30.50 3.09
810 2627 7.042456 GCAAATCAGATTTCGTCATCTTAGCTA 60.042 37.037 5.32 0.00 30.50 3.32
811 2628 6.238320 GCAAATCAGATTTCGTCATCTTAGCT 60.238 38.462 5.32 0.00 30.50 3.32
812 2629 5.906285 GCAAATCAGATTTCGTCATCTTAGC 59.094 40.000 5.32 0.00 30.50 3.09
813 2630 6.019559 TCGCAAATCAGATTTCGTCATCTTAG 60.020 38.462 18.84 4.02 30.50 2.18
814 2631 5.810074 TCGCAAATCAGATTTCGTCATCTTA 59.190 36.000 18.84 4.54 30.50 2.10
815 2632 4.631377 TCGCAAATCAGATTTCGTCATCTT 59.369 37.500 18.84 0.00 30.50 2.40
816 2633 4.183865 TCGCAAATCAGATTTCGTCATCT 58.816 39.130 18.84 0.00 33.44 2.90
822 2639 7.305590 CCAAAATACATCGCAAATCAGATTTCG 60.306 37.037 5.32 11.97 0.00 3.46
827 2644 5.449041 GCTCCAAAATACATCGCAAATCAGA 60.449 40.000 0.00 0.00 0.00 3.27
830 2647 3.725740 CGCTCCAAAATACATCGCAAATC 59.274 43.478 0.00 0.00 0.00 2.17
840 2657 1.384222 CCCAGCCCGCTCCAAAATAC 61.384 60.000 0.00 0.00 0.00 1.89
859 2682 0.934496 TGCGTGAACACTAGCACAAC 59.066 50.000 3.51 0.00 34.39 3.32
864 2687 0.731514 TAGCGTGCGTGAACACTAGC 60.732 55.000 3.51 1.34 38.45 3.42
871 2694 4.752879 GGGCCTAGCGTGCGTGAA 62.753 66.667 0.84 0.00 0.00 3.18
879 2702 1.084370 CGAAGACAAAGGGCCTAGCG 61.084 60.000 6.41 0.00 0.00 4.26
882 2705 1.002773 GGTTCGAAGACAAAGGGCCTA 59.997 52.381 6.41 0.00 34.32 3.93
982 2816 3.077359 CGGCAAGAGATTTTCTGGTCTT 58.923 45.455 0.00 0.00 35.91 3.01
1034 2869 3.561213 CGTAGAGCGCTCGTCGGA 61.561 66.667 32.84 17.76 38.94 4.55
1136 2971 1.611261 TCGGGGAAGTGGGATTCGT 60.611 57.895 0.00 0.00 0.00 3.85
1348 3192 3.699038 CTCTCAGACTTGTAAGAGAGGGG 59.301 52.174 17.17 2.07 46.42 4.79
1349 3193 4.981806 CTCTCAGACTTGTAAGAGAGGG 57.018 50.000 17.17 0.00 46.42 4.30
1396 3389 5.491982 ACTCCATAACTTCCAACATGACTC 58.508 41.667 0.00 0.00 0.00 3.36
1433 3426 3.068590 AGGCTAATGCATCAAAATTCCGG 59.931 43.478 0.00 0.00 41.91 5.14
1474 3467 4.523173 CCTATCACTGGAGATAAACCGCTA 59.477 45.833 0.00 0.00 30.59 4.26
1559 3561 5.601583 TTCTCATACCTGCGTAAATACCA 57.398 39.130 0.00 0.00 0.00 3.25
1595 3597 2.306805 ACATCCAGAAGCCACTCAATGA 59.693 45.455 0.00 0.00 0.00 2.57
1660 3665 7.079182 ACAAAGATTTCGCGGTTTGATAATA 57.921 32.000 6.13 0.00 34.61 0.98
1667 3672 3.430333 ACAACAAAGATTTCGCGGTTT 57.570 38.095 6.13 0.00 0.00 3.27
1672 3677 6.074516 GGAAACCTTTACAACAAAGATTTCGC 60.075 38.462 9.40 1.96 39.52 4.70
1678 3683 7.122948 TGCTTAAGGAAACCTTTACAACAAAGA 59.877 33.333 8.35 0.00 41.69 2.52
1764 3770 1.913762 ACCCTTGTCTCCTGGACCG 60.914 63.158 0.00 0.00 43.89 4.79
1821 3827 2.399448 GCGATCTAGACTAAAGCAGCC 58.601 52.381 0.00 0.00 0.00 4.85
1848 3854 4.481072 ACTATAGTTCACGATAGGGCCTT 58.519 43.478 13.45 0.00 41.49 4.35
1873 3879 4.599041 TCAGCAGGTAAAATACTTGGCAT 58.401 39.130 0.00 0.00 36.40 4.40
1874 3880 4.027674 TCAGCAGGTAAAATACTTGGCA 57.972 40.909 2.45 0.00 36.40 4.92
1875 3881 5.582689 ATTCAGCAGGTAAAATACTTGGC 57.417 39.130 2.45 0.00 36.40 4.52
1876 3882 7.396540 AGAATTCAGCAGGTAAAATACTTGG 57.603 36.000 8.44 0.00 36.40 3.61
1916 3922 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1917 3923 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1918 3924 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1919 3925 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
1936 3942 9.303116 TCACTAGTGAAATCTCTAGAAAGACTT 57.697 33.333 23.24 0.00 40.58 3.01
1937 3943 8.736244 GTCACTAGTGAAATCTCTAGAAAGACT 58.264 37.037 26.74 0.00 41.85 3.24
1938 3944 8.736244 AGTCACTAGTGAAATCTCTAGAAAGAC 58.264 37.037 26.74 20.58 41.85 3.01
1939 3945 8.871629 AGTCACTAGTGAAATCTCTAGAAAGA 57.128 34.615 26.74 13.84 41.85 2.52
1940 3946 9.997482 GTAGTCACTAGTGAAATCTCTAGAAAG 57.003 37.037 26.74 12.39 41.85 2.62
1941 3947 9.516546 TGTAGTCACTAGTGAAATCTCTAGAAA 57.483 33.333 26.74 9.40 41.85 2.52
1942 3948 9.688091 ATGTAGTCACTAGTGAAATCTCTAGAA 57.312 33.333 26.74 13.86 41.85 2.10
1945 3951 9.043079 CGTATGTAGTCACTAGTGAAATCTCTA 57.957 37.037 26.74 19.05 41.85 2.43
1946 3952 7.769507 TCGTATGTAGTCACTAGTGAAATCTCT 59.230 37.037 26.74 20.03 41.85 3.10
1947 3953 7.917597 TCGTATGTAGTCACTAGTGAAATCTC 58.082 38.462 26.74 14.05 41.85 2.75
1948 3954 7.860918 TCGTATGTAGTCACTAGTGAAATCT 57.139 36.000 26.74 20.70 41.85 2.40
1949 3955 8.796278 GTTTCGTATGTAGTCACTAGTGAAATC 58.204 37.037 26.74 18.28 41.85 2.17
1950 3956 8.301720 TGTTTCGTATGTAGTCACTAGTGAAAT 58.698 33.333 26.74 19.75 41.85 2.17
1951 3957 7.650890 TGTTTCGTATGTAGTCACTAGTGAAA 58.349 34.615 26.74 15.27 41.85 2.69
1952 3958 7.205737 TGTTTCGTATGTAGTCACTAGTGAA 57.794 36.000 26.74 12.17 41.85 3.18
1953 3959 6.806388 TGTTTCGTATGTAGTCACTAGTGA 57.194 37.500 21.74 21.74 37.24 3.41
1954 3960 7.862741 TTTGTTTCGTATGTAGTCACTAGTG 57.137 36.000 17.17 17.17 0.00 2.74
1955 3961 8.922676 CATTTTGTTTCGTATGTAGTCACTAGT 58.077 33.333 0.00 0.00 0.00 2.57
1956 3962 9.135843 TCATTTTGTTTCGTATGTAGTCACTAG 57.864 33.333 0.00 0.00 0.00 2.57
1957 3963 9.135843 CTCATTTTGTTTCGTATGTAGTCACTA 57.864 33.333 0.00 0.00 0.00 2.74
1958 3964 7.656137 ACTCATTTTGTTTCGTATGTAGTCACT 59.344 33.333 0.00 0.00 0.00 3.41
1959 3965 7.740346 CACTCATTTTGTTTCGTATGTAGTCAC 59.260 37.037 0.00 0.00 0.00 3.67
1960 3966 7.654116 TCACTCATTTTGTTTCGTATGTAGTCA 59.346 33.333 0.00 0.00 0.00 3.41
1961 3967 8.014322 TCACTCATTTTGTTTCGTATGTAGTC 57.986 34.615 0.00 0.00 0.00 2.59
1962 3968 7.956420 TCACTCATTTTGTTTCGTATGTAGT 57.044 32.000 0.00 0.00 0.00 2.73
1963 3969 9.478019 GATTCACTCATTTTGTTTCGTATGTAG 57.522 33.333 0.00 0.00 0.00 2.74
1964 3970 9.214957 AGATTCACTCATTTTGTTTCGTATGTA 57.785 29.630 0.00 0.00 0.00 2.29
1965 3971 8.099364 AGATTCACTCATTTTGTTTCGTATGT 57.901 30.769 0.00 0.00 0.00 2.29
1966 3972 9.478019 GTAGATTCACTCATTTTGTTTCGTATG 57.522 33.333 0.00 0.00 0.00 2.39
1967 3973 9.214957 TGTAGATTCACTCATTTTGTTTCGTAT 57.785 29.630 0.00 0.00 0.00 3.06
1968 3974 8.492748 GTGTAGATTCACTCATTTTGTTTCGTA 58.507 33.333 0.00 0.00 35.68 3.43
1969 3975 7.226720 AGTGTAGATTCACTCATTTTGTTTCGT 59.773 33.333 0.00 0.00 44.07 3.85
1970 3976 7.576236 AGTGTAGATTCACTCATTTTGTTTCG 58.424 34.615 0.00 0.00 44.07 3.46
1993 3999 7.943447 ACGGATGTATATAGACCACTTTAGAGT 59.057 37.037 0.00 0.00 36.25 3.24
1994 4000 8.338072 ACGGATGTATATAGACCACTTTAGAG 57.662 38.462 0.00 0.00 0.00 2.43
1995 4001 9.970553 ATACGGATGTATATAGACCACTTTAGA 57.029 33.333 0.00 0.00 39.52 2.10
1997 4003 9.524496 ACATACGGATGTATATAGACCACTTTA 57.476 33.333 12.79 0.00 44.77 1.85
1998 4004 8.418597 ACATACGGATGTATATAGACCACTTT 57.581 34.615 12.79 0.00 44.77 2.66
1999 4005 9.175312 CTACATACGGATGTATATAGACCACTT 57.825 37.037 20.64 0.00 45.42 3.16
2000 4006 8.327271 ACTACATACGGATGTATATAGACCACT 58.673 37.037 20.64 0.00 45.42 4.00
2001 4007 8.503458 ACTACATACGGATGTATATAGACCAC 57.497 38.462 20.64 0.00 45.42 4.16
2002 4008 9.524496 AAACTACATACGGATGTATATAGACCA 57.476 33.333 20.64 0.00 45.42 4.02
2003 4009 9.784680 CAAACTACATACGGATGTATATAGACC 57.215 37.037 20.64 0.00 45.42 3.85
2009 4015 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
2010 4016 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
2011 4017 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
2013 4019 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
2014 4020 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
2015 4021 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
2016 4022 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
2017 4023 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
2021 4027 9.706691 CTTTTAGAGATTCCACTACAAACTACA 57.293 33.333 0.00 0.00 0.00 2.74
2022 4028 9.152595 CCTTTTAGAGATTCCACTACAAACTAC 57.847 37.037 0.00 0.00 0.00 2.73
2023 4029 9.096823 TCCTTTTAGAGATTCCACTACAAACTA 57.903 33.333 0.00 0.00 0.00 2.24
2024 4030 7.878644 GTCCTTTTAGAGATTCCACTACAAACT 59.121 37.037 0.00 0.00 0.00 2.66
2025 4031 7.878644 AGTCCTTTTAGAGATTCCACTACAAAC 59.121 37.037 0.00 0.00 0.00 2.93
2026 4032 7.974504 AGTCCTTTTAGAGATTCCACTACAAA 58.025 34.615 0.00 0.00 0.00 2.83
2027 4033 7.554959 AGTCCTTTTAGAGATTCCACTACAA 57.445 36.000 0.00 0.00 0.00 2.41
2028 4034 7.554959 AAGTCCTTTTAGAGATTCCACTACA 57.445 36.000 0.00 0.00 0.00 2.74
2043 4049 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2044 4050 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
2045 4051 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
2046 4052 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
2047 4053 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
2048 4054 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2049 4055 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2050 4056 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2051 4057 8.591072 CAATACTCCCTCCGTTCCTAAATATAA 58.409 37.037 0.00 0.00 0.00 0.98
2052 4058 7.731688 ACAATACTCCCTCCGTTCCTAAATATA 59.268 37.037 0.00 0.00 0.00 0.86
2053 4059 6.557633 ACAATACTCCCTCCGTTCCTAAATAT 59.442 38.462 0.00 0.00 0.00 1.28
2054 4060 5.901276 ACAATACTCCCTCCGTTCCTAAATA 59.099 40.000 0.00 0.00 0.00 1.40
2055 4061 4.720273 ACAATACTCCCTCCGTTCCTAAAT 59.280 41.667 0.00 0.00 0.00 1.40
2056 4062 4.098894 ACAATACTCCCTCCGTTCCTAAA 58.901 43.478 0.00 0.00 0.00 1.85
2057 4063 3.716431 ACAATACTCCCTCCGTTCCTAA 58.284 45.455 0.00 0.00 0.00 2.69
2058 4064 3.393426 ACAATACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
2059 4065 2.249309 ACAATACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2060 4066 3.029570 ACTACAATACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 0.00 3.62
2061 4067 4.159135 TCAACTACAATACTCCCTCCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
2062 4068 4.081807 GTCAACTACAATACTCCCTCCGTT 60.082 45.833 0.00 0.00 0.00 4.44
2063 4069 3.446516 GTCAACTACAATACTCCCTCCGT 59.553 47.826 0.00 0.00 0.00 4.69
2064 4070 3.700038 AGTCAACTACAATACTCCCTCCG 59.300 47.826 0.00 0.00 0.00 4.63
2065 4071 6.146601 GTAGTCAACTACAATACTCCCTCC 57.853 45.833 14.04 0.00 46.08 4.30
2204 4211 7.338800 ACCATAGTAGGAGAATTTGCAAATG 57.661 36.000 24.74 9.42 0.00 2.32
2208 4215 9.555727 GTAAATACCATAGTAGGAGAATTTGCA 57.444 33.333 0.00 0.00 30.44 4.08
2246 4253 8.417106 CGCATTAGGCCCTATATATATGGATAG 58.583 40.741 16.00 0.00 40.31 2.08
2247 4254 7.899172 ACGCATTAGGCCCTATATATATGGATA 59.101 37.037 16.00 6.74 40.31 2.59
2249 4256 6.082031 ACGCATTAGGCCCTATATATATGGA 58.918 40.000 16.00 0.00 40.31 3.41
2250 4257 6.360370 ACGCATTAGGCCCTATATATATGG 57.640 41.667 0.00 9.17 40.31 2.74
2251 4258 8.677148 AAAACGCATTAGGCCCTATATATATG 57.323 34.615 0.00 0.00 40.31 1.78
2253 4260 7.493320 CGAAAAACGCATTAGGCCCTATATATA 59.507 37.037 0.00 0.00 40.31 0.86
2254 4261 6.315393 CGAAAAACGCATTAGGCCCTATATAT 59.685 38.462 0.00 0.00 40.31 0.86
2255 4262 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
2256 4263 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
2257 4264 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
2258 4265 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
2259 4266 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
2260 4267 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
2261 4268 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
2262 4269 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
2263 4270 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
2264 4271 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
2265 4272 4.092968 AGTTAGCCTCGAAAAACGCATTAG 59.907 41.667 0.00 0.00 42.26 1.73
2266 4273 3.998341 AGTTAGCCTCGAAAAACGCATTA 59.002 39.130 0.00 0.00 42.26 1.90
2267 4274 2.812011 AGTTAGCCTCGAAAAACGCATT 59.188 40.909 0.00 0.00 42.26 3.56
2268 4275 2.423577 AGTTAGCCTCGAAAAACGCAT 58.576 42.857 0.00 0.00 42.26 4.73
2269 4276 1.873698 AGTTAGCCTCGAAAAACGCA 58.126 45.000 0.00 0.00 42.26 5.24
2270 4277 2.963498 AAGTTAGCCTCGAAAAACGC 57.037 45.000 0.00 0.00 42.26 4.84
2271 4278 4.209112 GTCAAAGTTAGCCTCGAAAAACG 58.791 43.478 0.00 0.00 44.09 3.60
2272 4279 4.534168 GGTCAAAGTTAGCCTCGAAAAAC 58.466 43.478 0.00 0.00 0.00 2.43
2273 4280 3.249080 CGGTCAAAGTTAGCCTCGAAAAA 59.751 43.478 0.00 0.00 0.00 1.94
2274 4281 2.803956 CGGTCAAAGTTAGCCTCGAAAA 59.196 45.455 0.00 0.00 0.00 2.29
2275 4282 2.409975 CGGTCAAAGTTAGCCTCGAAA 58.590 47.619 0.00 0.00 0.00 3.46
2276 4283 1.938016 GCGGTCAAAGTTAGCCTCGAA 60.938 52.381 0.00 0.00 0.00 3.71
2277 4284 0.389426 GCGGTCAAAGTTAGCCTCGA 60.389 55.000 0.00 0.00 0.00 4.04
2278 4285 0.669318 TGCGGTCAAAGTTAGCCTCG 60.669 55.000 0.00 0.00 0.00 4.63
2279 4286 1.398390 CATGCGGTCAAAGTTAGCCTC 59.602 52.381 0.00 0.00 0.00 4.70
2280 4287 1.271379 ACATGCGGTCAAAGTTAGCCT 60.271 47.619 0.00 0.00 0.00 4.58
2281 4288 1.165270 ACATGCGGTCAAAGTTAGCC 58.835 50.000 0.00 0.00 0.00 3.93
2282 4289 2.989422 AACATGCGGTCAAAGTTAGC 57.011 45.000 0.00 0.00 0.00 3.09
2283 4290 4.201724 GCTCTAACATGCGGTCAAAGTTAG 60.202 45.833 0.00 0.00 41.34 2.34
2284 4291 3.682858 GCTCTAACATGCGGTCAAAGTTA 59.317 43.478 0.00 0.00 0.00 2.24
2285 4292 2.484264 GCTCTAACATGCGGTCAAAGTT 59.516 45.455 0.00 0.00 0.00 2.66
2286 4293 2.076863 GCTCTAACATGCGGTCAAAGT 58.923 47.619 0.00 0.00 0.00 2.66
2287 4294 2.076100 TGCTCTAACATGCGGTCAAAG 58.924 47.619 0.00 0.00 0.00 2.77
2288 4295 2.177394 TGCTCTAACATGCGGTCAAA 57.823 45.000 0.00 0.00 0.00 2.69
2289 4296 2.177394 TTGCTCTAACATGCGGTCAA 57.823 45.000 0.00 0.00 0.00 3.18
2290 4297 2.401583 ATTGCTCTAACATGCGGTCA 57.598 45.000 0.00 0.00 0.00 4.02
2291 4298 6.727824 ATATTATTGCTCTAACATGCGGTC 57.272 37.500 0.00 0.00 0.00 4.79
2292 4299 8.040727 TCATATATTATTGCTCTAACATGCGGT 58.959 33.333 0.00 0.00 0.00 5.68
2293 4300 8.331022 GTCATATATTATTGCTCTAACATGCGG 58.669 37.037 0.00 0.00 0.00 5.69
2294 4301 8.872845 TGTCATATATTATTGCTCTAACATGCG 58.127 33.333 0.00 0.00 0.00 4.73
2298 4305 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
2301 4308 9.948964 ACTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
2302 4309 8.859236 ACTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
2310 4317 8.623903 CCTTGTGTAACTTGCATGTCATATATT 58.376 33.333 5.61 0.00 38.04 1.28
2311 4318 7.255242 GCCTTGTGTAACTTGCATGTCATATAT 60.255 37.037 5.61 0.00 38.04 0.86
2312 4319 6.038161 GCCTTGTGTAACTTGCATGTCATATA 59.962 38.462 5.61 0.00 38.04 0.86
2313 4320 5.163622 GCCTTGTGTAACTTGCATGTCATAT 60.164 40.000 5.61 0.00 38.04 1.78
2314 4321 4.155826 GCCTTGTGTAACTTGCATGTCATA 59.844 41.667 5.61 0.00 38.04 2.15
2315 4322 3.057315 GCCTTGTGTAACTTGCATGTCAT 60.057 43.478 5.61 0.00 38.04 3.06
2316 4323 2.293122 GCCTTGTGTAACTTGCATGTCA 59.707 45.455 5.61 0.00 38.04 3.58
2317 4324 2.293122 TGCCTTGTGTAACTTGCATGTC 59.707 45.455 5.61 0.00 38.04 3.06
2318 4325 2.305928 TGCCTTGTGTAACTTGCATGT 58.694 42.857 0.00 0.00 38.04 3.21
2319 4326 3.581024 ATGCCTTGTGTAACTTGCATG 57.419 42.857 0.00 0.00 41.73 4.06
2320 4327 3.443681 GGTATGCCTTGTGTAACTTGCAT 59.556 43.478 0.00 0.00 44.05 3.96
2321 4328 2.817258 GGTATGCCTTGTGTAACTTGCA 59.183 45.455 0.00 0.00 38.99 4.08
2322 4329 2.159572 CGGTATGCCTTGTGTAACTTGC 60.160 50.000 0.00 0.00 38.04 4.01
2323 4330 3.071479 ACGGTATGCCTTGTGTAACTTG 58.929 45.455 0.00 0.00 38.04 3.16
2324 4331 3.244284 TGACGGTATGCCTTGTGTAACTT 60.244 43.478 0.00 0.00 38.04 2.66
2325 4332 2.300723 TGACGGTATGCCTTGTGTAACT 59.699 45.455 0.00 0.00 38.04 2.24
2326 4333 2.690786 TGACGGTATGCCTTGTGTAAC 58.309 47.619 0.00 0.00 37.35 2.50
2327 4334 3.404224 TTGACGGTATGCCTTGTGTAA 57.596 42.857 0.00 0.00 0.00 2.41
2328 4335 3.404224 TTTGACGGTATGCCTTGTGTA 57.596 42.857 0.00 0.00 0.00 2.90
2329 4336 2.264005 TTTGACGGTATGCCTTGTGT 57.736 45.000 0.00 0.00 0.00 3.72
2330 4337 3.727673 CGAATTTGACGGTATGCCTTGTG 60.728 47.826 0.00 0.00 0.00 3.33
2331 4338 2.418628 CGAATTTGACGGTATGCCTTGT 59.581 45.455 0.00 0.00 0.00 3.16
2332 4339 2.418628 ACGAATTTGACGGTATGCCTTG 59.581 45.455 0.00 0.00 34.93 3.61
2333 4340 2.706890 ACGAATTTGACGGTATGCCTT 58.293 42.857 0.00 0.00 34.93 4.35
2334 4341 2.396590 ACGAATTTGACGGTATGCCT 57.603 45.000 0.00 0.00 34.93 4.75
2335 4342 2.034339 CGTACGAATTTGACGGTATGCC 60.034 50.000 10.44 0.00 33.01 4.40
2336 4343 2.599973 ACGTACGAATTTGACGGTATGC 59.400 45.455 24.41 0.00 40.84 3.14
2337 4344 3.853103 TCACGTACGAATTTGACGGTATG 59.147 43.478 24.41 4.75 40.84 2.39
2338 4345 4.095410 TCACGTACGAATTTGACGGTAT 57.905 40.909 24.41 0.00 40.84 2.73
2339 4346 3.550950 TCACGTACGAATTTGACGGTA 57.449 42.857 24.41 0.00 40.84 4.02
2340 4347 2.420628 TCACGTACGAATTTGACGGT 57.579 45.000 24.41 0.00 40.84 4.83
2341 4348 3.426191 TCTTTCACGTACGAATTTGACGG 59.574 43.478 24.41 9.85 40.84 4.79
2342 4349 4.618338 TCTTTCACGTACGAATTTGACG 57.382 40.909 24.41 8.69 42.22 4.35
2343 4350 4.839174 GCTTCTTTCACGTACGAATTTGAC 59.161 41.667 24.41 0.00 0.00 3.18
2344 4351 4.748102 AGCTTCTTTCACGTACGAATTTGA 59.252 37.500 24.41 12.38 0.00 2.69
2345 4352 5.018695 AGCTTCTTTCACGTACGAATTTG 57.981 39.130 24.41 9.92 0.00 2.32
2346 4353 5.333875 GGAAGCTTCTTTCACGTACGAATTT 60.334 40.000 24.41 0.00 0.00 1.82
2347 4354 4.151867 GGAAGCTTCTTTCACGTACGAATT 59.848 41.667 24.41 0.00 0.00 2.17
2348 4355 3.678548 GGAAGCTTCTTTCACGTACGAAT 59.321 43.478 24.41 0.00 0.00 3.34
2349 4356 3.054878 GGAAGCTTCTTTCACGTACGAA 58.945 45.455 24.41 3.37 0.00 3.85
2350 4357 2.034939 TGGAAGCTTCTTTCACGTACGA 59.965 45.455 24.41 0.00 0.00 3.43
2351 4358 2.400399 TGGAAGCTTCTTTCACGTACG 58.600 47.619 25.05 15.01 0.00 3.67
2352 4359 4.451096 TCATTGGAAGCTTCTTTCACGTAC 59.549 41.667 25.05 6.52 0.00 3.67
2353 4360 4.637276 TCATTGGAAGCTTCTTTCACGTA 58.363 39.130 25.05 1.93 0.00 3.57
2354 4361 3.476552 TCATTGGAAGCTTCTTTCACGT 58.523 40.909 25.05 4.76 0.00 4.49
2355 4362 4.691860 ATCATTGGAAGCTTCTTTCACG 57.308 40.909 25.05 9.96 0.00 4.35
2408 4415 9.905713 ACTGCCTTTGACTATTGATAAGATTAA 57.094 29.630 0.00 0.00 0.00 1.40
2409 4416 9.547753 GACTGCCTTTGACTATTGATAAGATTA 57.452 33.333 0.00 0.00 0.00 1.75
2410 4417 8.270744 AGACTGCCTTTGACTATTGATAAGATT 58.729 33.333 0.00 0.00 0.00 2.40
2411 4418 7.800092 AGACTGCCTTTGACTATTGATAAGAT 58.200 34.615 0.00 0.00 0.00 2.40
2412 4419 7.187824 AGACTGCCTTTGACTATTGATAAGA 57.812 36.000 0.00 0.00 0.00 2.10
2413 4420 7.550551 TCAAGACTGCCTTTGACTATTGATAAG 59.449 37.037 0.00 0.00 31.42 1.73
2414 4421 7.394016 TCAAGACTGCCTTTGACTATTGATAA 58.606 34.615 0.00 0.00 31.42 1.75
2415 4422 6.946340 TCAAGACTGCCTTTGACTATTGATA 58.054 36.000 0.00 0.00 31.42 2.15
2416 4423 5.809001 TCAAGACTGCCTTTGACTATTGAT 58.191 37.500 0.00 0.00 31.42 2.57
2417 4424 5.227569 TCAAGACTGCCTTTGACTATTGA 57.772 39.130 0.00 0.00 31.42 2.57
2418 4425 5.947228 TTCAAGACTGCCTTTGACTATTG 57.053 39.130 0.00 0.00 31.42 1.90
2419 4426 6.513393 CGTTTTCAAGACTGCCTTTGACTATT 60.513 38.462 0.00 0.00 31.42 1.73
2420 4427 5.049405 CGTTTTCAAGACTGCCTTTGACTAT 60.049 40.000 0.00 0.00 31.42 2.12
2421 4428 4.272504 CGTTTTCAAGACTGCCTTTGACTA 59.727 41.667 0.00 0.00 31.42 2.59
2422 4429 3.065371 CGTTTTCAAGACTGCCTTTGACT 59.935 43.478 0.00 0.00 31.42 3.41
2423 4430 3.363178 CGTTTTCAAGACTGCCTTTGAC 58.637 45.455 0.00 0.00 31.42 3.18
2424 4431 2.223479 GCGTTTTCAAGACTGCCTTTGA 60.223 45.455 0.00 0.00 31.42 2.69
2425 4432 2.119457 GCGTTTTCAAGACTGCCTTTG 58.881 47.619 0.00 0.00 31.42 2.77
2426 4433 1.748493 TGCGTTTTCAAGACTGCCTTT 59.252 42.857 0.00 0.00 31.42 3.11
2427 4434 1.388547 TGCGTTTTCAAGACTGCCTT 58.611 45.000 0.00 0.00 34.91 4.35
2428 4435 1.609208 ATGCGTTTTCAAGACTGCCT 58.391 45.000 0.00 0.00 0.00 4.75
2429 4436 2.422276 AATGCGTTTTCAAGACTGCC 57.578 45.000 0.00 0.00 0.00 4.85
2430 4437 2.902484 CGTAATGCGTTTTCAAGACTGC 59.098 45.455 0.00 0.00 35.54 4.40
2431 4438 2.902484 GCGTAATGCGTTTTCAAGACTG 59.098 45.455 0.00 0.00 43.66 3.51
2432 4439 3.183237 GCGTAATGCGTTTTCAAGACT 57.817 42.857 0.00 0.00 43.66 3.24
2444 4451 1.593196 TGATTAGCAGGGCGTAATGC 58.407 50.000 0.40 0.40 42.87 3.56
2445 4452 3.814842 TCATTGATTAGCAGGGCGTAATG 59.185 43.478 0.00 0.00 0.00 1.90
2446 4453 4.085357 TCATTGATTAGCAGGGCGTAAT 57.915 40.909 0.00 0.00 0.00 1.89
2447 4454 3.552132 TCATTGATTAGCAGGGCGTAA 57.448 42.857 0.00 0.00 0.00 3.18
2448 4455 3.552132 TTCATTGATTAGCAGGGCGTA 57.448 42.857 0.00 0.00 0.00 4.42
2449 4456 2.418368 TTCATTGATTAGCAGGGCGT 57.582 45.000 0.00 0.00 0.00 5.68
2450 4457 3.119531 TGTTTTCATTGATTAGCAGGGCG 60.120 43.478 0.00 0.00 0.00 6.13
2451 4458 4.176271 GTGTTTTCATTGATTAGCAGGGC 58.824 43.478 0.00 0.00 0.00 5.19
2452 4459 5.163513 GTGTGTTTTCATTGATTAGCAGGG 58.836 41.667 0.00 0.00 0.00 4.45
2569 4576 7.575332 AACAACAAAATAAATATGACACGCC 57.425 32.000 0.00 0.00 0.00 5.68
2687 4696 5.412594 GCATACACAATGGAGAAAGAAGTGA 59.587 40.000 0.00 0.00 35.99 3.41
2702 4711 4.991153 TTTGGAACACAAGCATACACAA 57.009 36.364 0.00 0.00 40.82 3.33
2745 4754 6.933521 AGTCATTCCAGATGTATGCATAAGAC 59.066 38.462 8.28 0.00 35.07 3.01
2808 4817 6.031729 CGATTGTCAATCAGTTCAACGAATTG 59.968 38.462 22.34 10.20 37.78 2.32
2813 4822 4.389664 ACGATTGTCAATCAGTTCAACG 57.610 40.909 22.34 10.84 37.78 4.10
2863 4873 6.312918 CGTTGCTAACCAGTTCATGTACTATT 59.687 38.462 4.51 5.69 0.00 1.73
3006 5016 8.367660 AGTGATGGAGAAGACAGAATTAGTTA 57.632 34.615 0.00 0.00 0.00 2.24
3077 5089 6.184068 TGGCAGCCACATTTCTTAGTATTTA 58.816 36.000 11.22 0.00 0.00 1.40
3231 5243 4.522405 TGTATCAGTTCACAATTTGGGGTG 59.478 41.667 0.00 0.00 36.36 4.61
3232 5244 4.735369 TGTATCAGTTCACAATTTGGGGT 58.265 39.130 0.00 0.00 0.00 4.95
3419 5431 1.539827 GGTTCCGGTCAAAAGACATGG 59.460 52.381 0.00 0.00 0.00 3.66
3434 5450 6.569801 GCTGTTACTTGTTAGATTTGGGTTCC 60.570 42.308 0.00 0.00 0.00 3.62
3444 5460 8.696374 AGATATAGCTTGCTGTTACTTGTTAGA 58.304 33.333 5.26 0.00 0.00 2.10
3487 5503 1.888018 CTCCTGCAAACCTGGCATG 59.112 57.895 0.00 0.00 41.06 4.06
3510 5529 3.341823 CTTTCCTTCAGATGACCCACTG 58.658 50.000 0.00 0.00 35.72 3.66
3620 5640 0.693049 GAGGGCAGGAGGAAGACAAA 59.307 55.000 0.00 0.00 0.00 2.83
3644 5664 3.687212 CCGCATCCTGTGTTACACATTTA 59.313 43.478 18.96 7.73 43.71 1.40
3645 5665 2.487762 CCGCATCCTGTGTTACACATTT 59.512 45.455 18.96 4.06 43.71 2.32
3646 5666 2.083774 CCGCATCCTGTGTTACACATT 58.916 47.619 18.96 4.41 43.71 2.71
3672 5692 0.887836 CATCATGCCGTGCCAGCTAT 60.888 55.000 0.00 0.00 0.00 2.97
3712 5733 9.477484 GATAAGAGCGAATTTTATCTAACCTCA 57.523 33.333 0.00 0.00 33.24 3.86
3728 5749 6.924111 TGCTATTGTATGATGATAAGAGCGA 58.076 36.000 0.00 0.00 39.49 4.93
3773 5794 2.236146 TGGGATATATAACAGCGGCCAG 59.764 50.000 2.24 0.00 0.00 4.85
3804 5829 6.128336 CCTGCGAGAAGATGGAATTGATTATC 60.128 42.308 0.00 0.00 0.00 1.75
3839 5864 0.882042 GACGTCTCGAGGGGCGTATA 60.882 60.000 22.85 0.00 41.80 1.47
3907 5932 1.079819 ACACGAATGGCTCCGACAG 60.080 57.895 0.00 0.00 0.00 3.51
4029 6055 1.541147 GCAGCAAACAGACTATGCCAA 59.459 47.619 4.06 0.00 40.93 4.52
4051 6080 2.923035 ACAGGTGTCCCCAGACCG 60.923 66.667 0.00 0.00 41.12 4.79
4109 6138 3.447586 ACAGACACGAGTACATGGCTAAT 59.552 43.478 0.00 0.00 30.17 1.73
4139 6172 4.843147 TGAAACGAACAATACAAGCACAG 58.157 39.130 0.00 0.00 0.00 3.66
4167 6200 0.249322 ACCGTGGACGCATATAGCAC 60.249 55.000 0.00 0.00 46.13 4.40
4215 6248 2.531522 AGATTTTTGTGGGTTGCTGC 57.468 45.000 0.00 0.00 0.00 5.25
4217 6250 4.696455 CAGAAAGATTTTTGTGGGTTGCT 58.304 39.130 0.00 0.00 34.78 3.91
4226 6259 4.788100 CGTACGGATGCAGAAAGATTTTTG 59.212 41.667 7.57 0.00 0.00 2.44
4245 6278 0.108520 TGATCCCTTTGTCCGCGTAC 60.109 55.000 4.92 0.00 0.00 3.67
4247 6280 0.035439 ATTGATCCCTTTGTCCGCGT 60.035 50.000 4.92 0.00 0.00 6.01
4256 6289 1.407437 GCGTCTGTGGATTGATCCCTT 60.407 52.381 7.53 0.00 46.59 3.95
4257 6290 0.179000 GCGTCTGTGGATTGATCCCT 59.821 55.000 7.53 0.00 46.59 4.20
4258 6291 1.154205 CGCGTCTGTGGATTGATCCC 61.154 60.000 7.53 0.47 46.59 3.85
4328 6361 3.854809 CACAAATTTCGTCCGTTTGTTGT 59.145 39.130 4.72 1.70 42.35 3.32
4330 6363 2.855370 GCACAAATTTCGTCCGTTTGTT 59.145 40.909 4.72 0.00 42.35 2.83
4381 6415 2.611751 CCGCGATGTTTGTATGAATCCA 59.388 45.455 8.23 0.00 0.00 3.41
4424 6469 2.475339 TATGTTTAGGGGCGGGTCTA 57.525 50.000 0.00 0.00 0.00 2.59
4459 6504 4.003788 CAGGCTTGGACGTCGGGT 62.004 66.667 9.92 0.00 0.00 5.28
4460 6505 4.003788 ACAGGCTTGGACGTCGGG 62.004 66.667 9.92 3.13 0.00 5.14
4463 6508 0.814010 ACAACACAGGCTTGGACGTC 60.814 55.000 7.13 7.13 0.00 4.34
4475 6520 0.036732 GGCAGATGGAGGACAACACA 59.963 55.000 0.00 0.00 0.00 3.72
4480 6525 1.305297 AGACGGCAGATGGAGGACA 60.305 57.895 0.00 0.00 0.00 4.02
4488 6533 0.035152 TGCAAATGGAGACGGCAGAT 60.035 50.000 0.00 0.00 0.00 2.90
4490 6535 0.813184 AATGCAAATGGAGACGGCAG 59.187 50.000 0.00 0.00 37.96 4.85
4492 6537 0.810648 TCAATGCAAATGGAGACGGC 59.189 50.000 0.00 0.00 0.00 5.68
4509 6554 9.982291 GCACTTTCACTTTATAAATTATCGTCA 57.018 29.630 0.00 0.00 0.00 4.35
4511 6556 8.120465 CCGCACTTTCACTTTATAAATTATCGT 58.880 33.333 0.00 0.00 0.00 3.73
4518 6563 4.653868 TCCCCGCACTTTCACTTTATAAA 58.346 39.130 0.00 0.00 0.00 1.40
4519 6564 4.020039 TCTCCCCGCACTTTCACTTTATAA 60.020 41.667 0.00 0.00 0.00 0.98
4520 6565 3.516300 TCTCCCCGCACTTTCACTTTATA 59.484 43.478 0.00 0.00 0.00 0.98
4523 6570 0.472471 TCTCCCCGCACTTTCACTTT 59.528 50.000 0.00 0.00 0.00 2.66
4531 6578 2.118513 AGTCTGTCTCCCCGCACT 59.881 61.111 0.00 0.00 0.00 4.40
4619 6692 0.108281 TTCACGTCCACCAACGACAA 60.108 50.000 3.16 0.00 45.37 3.18
4663 6736 1.120530 AGTGGGACGAAGACAACACT 58.879 50.000 0.00 0.00 37.20 3.55
4665 6738 0.105964 CCAGTGGGACGAAGACAACA 59.894 55.000 0.00 0.00 35.59 3.33
4682 6755 1.004320 CGAACCATCAACCGGACCA 60.004 57.895 9.46 0.00 0.00 4.02
4685 6758 1.080366 CGACGAACCATCAACCGGA 60.080 57.895 9.46 0.00 0.00 5.14
4690 6763 1.006825 CGCTGTCGACGAACCATCAA 61.007 55.000 11.62 0.00 38.10 2.57
4726 6799 2.720758 CGCAGAGGAGAACAACGCG 61.721 63.158 3.53 3.53 34.89 6.01
4781 6854 2.031012 TCAAGCTGCCACTCACCG 59.969 61.111 0.00 0.00 0.00 4.94
4792 6865 2.433318 GTCTTCCGCGCTCAAGCT 60.433 61.111 5.56 0.00 39.32 3.74
4806 6879 3.657634 CAGCGTGCCATCTATAATGTCT 58.342 45.455 0.00 0.00 0.00 3.41
4812 6885 1.602920 CGAAGCAGCGTGCCATCTATA 60.603 52.381 6.39 0.00 46.52 1.31
4854 6960 1.964223 GAAGGGCCAGATCTATCGTGA 59.036 52.381 6.18 0.00 0.00 4.35
4856 6962 0.962489 CGAAGGGCCAGATCTATCGT 59.038 55.000 6.18 0.00 0.00 3.73
4859 6965 2.175202 CTAGCGAAGGGCCAGATCTAT 58.825 52.381 6.18 0.00 45.17 1.98
4880 6988 3.385384 CTCCTGGAGCAGCACCGA 61.385 66.667 11.42 0.00 0.00 4.69
4973 7081 2.953821 CACTTCAACGCCGCCATT 59.046 55.556 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.