Multiple sequence alignment - TraesCS4D01G200100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G200100 chr4D 100.000 3245 0 0 1 3245 346747639 346750883 0.000000e+00 5993.0
1 TraesCS4D01G200100 chr4D 100.000 183 0 0 1 183 373404694 373404512 4.010000e-89 339.0
2 TraesCS4D01G200100 chr4B 94.262 2806 123 20 460 3245 427742111 427744898 0.000000e+00 4255.0
3 TraesCS4D01G200100 chr4B 92.105 266 19 1 184 447 427717691 427717956 1.100000e-99 374.0
4 TraesCS4D01G200100 chr4A 94.412 2702 97 12 572 3245 118959110 118956435 0.000000e+00 4104.0
5 TraesCS4D01G200100 chr4A 80.189 212 35 5 205 411 62379456 62379247 5.610000e-33 152.0
6 TraesCS4D01G200100 chr1D 99.462 186 1 0 1 186 96564511 96564696 4.010000e-89 339.0
7 TraesCS4D01G200100 chr1D 84.574 188 25 4 234 418 211492990 211492804 1.990000e-42 183.0
8 TraesCS4D01G200100 chr7D 99.459 185 1 0 1 185 68955901 68955717 1.440000e-88 337.0
9 TraesCS4D01G200100 chr6D 99.459 185 1 0 1 185 118193087 118193271 1.440000e-88 337.0
10 TraesCS4D01G200100 chr3D 98.936 188 2 0 1 188 20977620 20977433 1.440000e-88 337.0
11 TraesCS4D01G200100 chr3D 99.459 185 1 0 1 185 444165610 444165794 1.440000e-88 337.0
12 TraesCS4D01G200100 chr3D 99.459 185 1 0 3 187 481424351 481424167 1.440000e-88 337.0
13 TraesCS4D01G200100 chr3D 97.436 195 4 1 1 194 481371504 481371698 6.710000e-87 331.0
14 TraesCS4D01G200100 chr3D 84.545 220 30 4 202 418 418869945 418869727 7.050000e-52 215.0
15 TraesCS4D01G200100 chr2D 97.423 194 4 1 1 194 419166661 419166469 2.410000e-86 329.0
16 TraesCS4D01G200100 chr2D 84.018 219 33 2 202 418 584893060 584893278 3.280000e-50 209.0
17 TraesCS4D01G200100 chr2D 81.579 114 13 6 431 543 79272686 79272792 1.600000e-13 87.9
18 TraesCS4D01G200100 chr5A 84.163 221 32 3 202 419 303405584 303405364 9.120000e-51 211.0
19 TraesCS4D01G200100 chr2A 86.957 184 22 2 204 385 257187920 257187737 4.240000e-49 206.0
20 TraesCS4D01G200100 chr2A 80.455 220 40 3 202 418 718984346 718984565 7.200000e-37 165.0
21 TraesCS4D01G200100 chr5D 83.796 216 32 3 207 419 221139288 221139503 5.490000e-48 202.0
22 TraesCS4D01G200100 chr5D 88.060 67 7 1 426 492 304393064 304392999 9.650000e-11 78.7
23 TraesCS4D01G200100 chr5D 88.060 67 7 1 426 492 424647759 424647694 9.650000e-11 78.7
24 TraesCS4D01G200100 chr5D 88.060 67 7 1 426 492 424648364 424648299 9.650000e-11 78.7
25 TraesCS4D01G200100 chr5D 90.164 61 5 1 426 486 492585664 492585723 9.650000e-11 78.7
26 TraesCS4D01G200100 chr1A 83.410 217 33 3 205 418 266193307 266193091 7.100000e-47 198.0
27 TraesCS4D01G200100 chr1A 91.803 61 4 1 426 486 323701123 323701064 2.070000e-12 84.2
28 TraesCS4D01G200100 chr2B 81.356 118 12 8 426 543 177217973 177217866 1.600000e-13 87.9
29 TraesCS4D01G200100 chr2B 84.810 79 9 3 425 501 5042508 5042585 3.470000e-10 76.8
30 TraesCS4D01G200100 chr6B 80.531 113 13 8 426 532 259775963 259776072 9.650000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G200100 chr4D 346747639 346750883 3244 False 5993 5993 100.000 1 3245 1 chr4D.!!$F1 3244
1 TraesCS4D01G200100 chr4B 427742111 427744898 2787 False 4255 4255 94.262 460 3245 1 chr4B.!!$F2 2785
2 TraesCS4D01G200100 chr4A 118956435 118959110 2675 True 4104 4104 94.412 572 3245 1 chr4A.!!$R2 2673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.034059 GTCAGCATACCGATCCAGGG 59.966 60.0 0.00 0.00 35.02 4.45 F
194 195 0.036164 TCGCTACAGGCACAAACCAT 59.964 50.0 0.00 0.00 41.91 3.55 F
202 203 0.096976 GGCACAAACCATCACGATCG 59.903 55.0 14.88 14.88 0.00 3.69 F
862 868 0.183492 GCCAGAAGCCATGATACCCA 59.817 55.0 0.00 0.00 34.35 4.51 F
1236 1270 0.320374 CGCTCCTCTTTGTGGGTGTA 59.680 55.0 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1270 0.035056 CCAAGAAGAGGGCCACGATT 60.035 55.000 6.18 0.00 0.00 3.34 R
1726 1760 0.610232 ACTGGTGCTGGATCCAAAGC 60.610 55.000 17.00 17.04 39.96 3.51 R
1730 1764 0.770499 TTCAACTGGTGCTGGATCCA 59.230 50.000 15.27 15.27 0.00 3.41 R
1731 1765 1.003580 TCTTCAACTGGTGCTGGATCC 59.996 52.381 4.20 4.20 0.00 3.36 R
2553 2593 1.407979 GCTGCTGATTTCCAAGATGGG 59.592 52.381 0.00 0.00 38.32 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.765689 TGGGAATCCACAACCTTGTT 57.234 45.000 0.09 0.00 39.91 2.83
27 28 3.885976 TGGGAATCCACAACCTTGTTA 57.114 42.857 0.09 0.00 39.91 2.41
28 29 3.492337 TGGGAATCCACAACCTTGTTAC 58.508 45.455 0.09 0.00 39.91 2.50
29 30 3.139397 TGGGAATCCACAACCTTGTTACT 59.861 43.478 0.09 0.00 39.91 2.24
30 31 4.149598 GGGAATCCACAACCTTGTTACTT 58.850 43.478 0.09 0.00 39.91 2.24
31 32 4.217767 GGGAATCCACAACCTTGTTACTTC 59.782 45.833 0.09 0.00 39.91 3.01
32 33 4.217767 GGAATCCACAACCTTGTTACTTCC 59.782 45.833 0.00 6.63 39.91 3.46
33 34 2.841215 TCCACAACCTTGTTACTTCCG 58.159 47.619 0.00 0.00 39.91 4.30
34 35 1.265905 CCACAACCTTGTTACTTCCGC 59.734 52.381 0.00 0.00 39.91 5.54
35 36 2.218603 CACAACCTTGTTACTTCCGCT 58.781 47.619 0.00 0.00 39.91 5.52
36 37 3.395639 CACAACCTTGTTACTTCCGCTA 58.604 45.455 0.00 0.00 39.91 4.26
37 38 4.000988 CACAACCTTGTTACTTCCGCTAT 58.999 43.478 0.00 0.00 39.91 2.97
38 39 4.454504 CACAACCTTGTTACTTCCGCTATT 59.545 41.667 0.00 0.00 39.91 1.73
39 40 5.048991 CACAACCTTGTTACTTCCGCTATTT 60.049 40.000 0.00 0.00 39.91 1.40
40 41 5.048991 ACAACCTTGTTACTTCCGCTATTTG 60.049 40.000 0.00 0.00 38.47 2.32
41 42 4.007659 ACCTTGTTACTTCCGCTATTTGG 58.992 43.478 0.00 0.00 0.00 3.28
42 43 4.258543 CCTTGTTACTTCCGCTATTTGGA 58.741 43.478 0.00 0.00 0.00 3.53
43 44 4.881850 CCTTGTTACTTCCGCTATTTGGAT 59.118 41.667 0.00 0.00 34.91 3.41
44 45 5.357032 CCTTGTTACTTCCGCTATTTGGATT 59.643 40.000 0.00 0.00 34.91 3.01
45 46 5.811399 TGTTACTTCCGCTATTTGGATTG 57.189 39.130 0.00 0.00 34.91 2.67
46 47 5.492895 TGTTACTTCCGCTATTTGGATTGA 58.507 37.500 0.00 0.00 34.91 2.57
47 48 5.584649 TGTTACTTCCGCTATTTGGATTGAG 59.415 40.000 0.00 0.00 34.91 3.02
48 49 3.545703 ACTTCCGCTATTTGGATTGAGG 58.454 45.455 0.00 0.00 34.91 3.86
49 50 3.054361 ACTTCCGCTATTTGGATTGAGGT 60.054 43.478 0.00 0.00 34.91 3.85
50 51 4.163458 ACTTCCGCTATTTGGATTGAGGTA 59.837 41.667 0.00 0.00 34.91 3.08
51 52 4.764050 TCCGCTATTTGGATTGAGGTAA 57.236 40.909 0.00 0.00 31.79 2.85
52 53 5.304686 TCCGCTATTTGGATTGAGGTAAT 57.695 39.130 0.00 0.00 31.79 1.89
53 54 6.428083 TCCGCTATTTGGATTGAGGTAATA 57.572 37.500 0.00 0.00 31.79 0.98
54 55 6.464222 TCCGCTATTTGGATTGAGGTAATAG 58.536 40.000 0.00 0.00 31.79 1.73
55 56 6.042781 TCCGCTATTTGGATTGAGGTAATAGT 59.957 38.462 0.00 0.00 33.45 2.12
56 57 7.233962 TCCGCTATTTGGATTGAGGTAATAGTA 59.766 37.037 0.00 0.00 33.45 1.82
57 58 8.041323 CCGCTATTTGGATTGAGGTAATAGTAT 58.959 37.037 0.00 0.00 33.45 2.12
58 59 9.436957 CGCTATTTGGATTGAGGTAATAGTATT 57.563 33.333 0.17 0.17 33.45 1.89
91 92 9.959721 ACTTTATACATGTGATTTACCTCTGTT 57.040 29.630 9.11 0.00 0.00 3.16
101 102 9.832445 TGTGATTTACCTCTGTTATAAATCCTC 57.168 33.333 11.47 7.11 41.51 3.71
102 103 8.979574 GTGATTTACCTCTGTTATAAATCCTCG 58.020 37.037 11.47 0.00 41.51 4.63
103 104 8.920174 TGATTTACCTCTGTTATAAATCCTCGA 58.080 33.333 11.47 0.00 41.51 4.04
104 105 9.413048 GATTTACCTCTGTTATAAATCCTCGAG 57.587 37.037 5.13 5.13 38.51 4.04
105 106 7.893124 TTACCTCTGTTATAAATCCTCGAGT 57.107 36.000 12.31 0.00 0.00 4.18
106 107 8.985315 TTACCTCTGTTATAAATCCTCGAGTA 57.015 34.615 12.31 0.00 0.00 2.59
107 108 7.274603 ACCTCTGTTATAAATCCTCGAGTAC 57.725 40.000 12.31 0.00 0.00 2.73
108 109 7.061688 ACCTCTGTTATAAATCCTCGAGTACT 58.938 38.462 12.31 0.00 0.00 2.73
109 110 7.013464 ACCTCTGTTATAAATCCTCGAGTACTG 59.987 40.741 12.31 0.00 0.00 2.74
110 111 7.013464 CCTCTGTTATAAATCCTCGAGTACTGT 59.987 40.741 12.31 0.00 0.00 3.55
111 112 7.704271 TCTGTTATAAATCCTCGAGTACTGTG 58.296 38.462 12.31 0.00 0.00 3.66
112 113 7.338703 TCTGTTATAAATCCTCGAGTACTGTGT 59.661 37.037 12.31 0.00 0.00 3.72
113 114 7.255569 TGTTATAAATCCTCGAGTACTGTGTG 58.744 38.462 12.31 0.00 0.00 3.82
114 115 5.916661 ATAAATCCTCGAGTACTGTGTGT 57.083 39.130 12.31 0.00 0.00 3.72
115 116 3.577649 AATCCTCGAGTACTGTGTGTG 57.422 47.619 12.31 0.00 0.00 3.82
116 117 1.977056 TCCTCGAGTACTGTGTGTGT 58.023 50.000 12.31 0.00 0.00 3.72
117 118 1.878088 TCCTCGAGTACTGTGTGTGTC 59.122 52.381 12.31 0.00 0.00 3.67
118 119 1.607148 CCTCGAGTACTGTGTGTGTCA 59.393 52.381 12.31 0.00 0.00 3.58
119 120 2.350868 CCTCGAGTACTGTGTGTGTCAG 60.351 54.545 12.31 0.00 38.68 3.51
120 121 1.001706 TCGAGTACTGTGTGTGTCAGC 60.002 52.381 0.00 0.00 36.50 4.26
121 122 1.269051 CGAGTACTGTGTGTGTCAGCA 60.269 52.381 0.00 0.00 36.50 4.41
122 123 2.608016 CGAGTACTGTGTGTGTCAGCAT 60.608 50.000 0.00 0.00 36.50 3.79
123 124 3.365969 CGAGTACTGTGTGTGTCAGCATA 60.366 47.826 0.00 0.00 36.50 3.14
124 125 3.914312 AGTACTGTGTGTGTCAGCATAC 58.086 45.455 0.00 0.00 37.26 2.39
125 126 2.169832 ACTGTGTGTGTCAGCATACC 57.830 50.000 0.00 0.00 36.12 2.73
126 127 1.070821 CTGTGTGTGTCAGCATACCG 58.929 55.000 0.00 0.00 36.12 4.02
127 128 0.676736 TGTGTGTGTCAGCATACCGA 59.323 50.000 0.00 0.00 36.12 4.69
128 129 1.275010 TGTGTGTGTCAGCATACCGAT 59.725 47.619 0.00 0.00 36.12 4.18
129 130 1.927174 GTGTGTGTCAGCATACCGATC 59.073 52.381 0.00 0.00 36.12 3.69
130 131 1.134818 TGTGTGTCAGCATACCGATCC 60.135 52.381 0.00 0.00 36.12 3.36
131 132 1.134818 GTGTGTCAGCATACCGATCCA 60.135 52.381 0.00 0.00 31.61 3.41
132 133 1.136891 TGTGTCAGCATACCGATCCAG 59.863 52.381 0.00 0.00 0.00 3.86
133 134 0.752658 TGTCAGCATACCGATCCAGG 59.247 55.000 0.00 0.00 37.30 4.45
134 135 0.034059 GTCAGCATACCGATCCAGGG 59.966 60.000 0.00 0.00 35.02 4.45
135 136 0.105709 TCAGCATACCGATCCAGGGA 60.106 55.000 0.00 0.00 35.02 4.20
136 137 0.979665 CAGCATACCGATCCAGGGAT 59.020 55.000 0.00 0.00 34.43 3.85
140 141 2.398754 ATACCGATCCAGGGATGACA 57.601 50.000 5.35 0.00 32.42 3.58
141 142 1.410004 TACCGATCCAGGGATGACAC 58.590 55.000 5.35 0.00 34.60 3.67
142 143 0.325671 ACCGATCCAGGGATGACACT 60.326 55.000 5.35 0.00 34.60 3.55
143 144 0.833287 CCGATCCAGGGATGACACTT 59.167 55.000 5.35 0.00 34.60 3.16
144 145 2.039418 CCGATCCAGGGATGACACTTA 58.961 52.381 5.35 0.00 34.60 2.24
145 146 2.434336 CCGATCCAGGGATGACACTTAA 59.566 50.000 5.35 0.00 34.60 1.85
146 147 3.493350 CCGATCCAGGGATGACACTTAAG 60.493 52.174 5.35 0.00 34.60 1.85
147 148 3.471680 GATCCAGGGATGACACTTAAGC 58.528 50.000 5.35 0.00 34.60 3.09
148 149 2.265367 TCCAGGGATGACACTTAAGCA 58.735 47.619 1.29 0.00 0.00 3.91
149 150 2.027192 TCCAGGGATGACACTTAAGCAC 60.027 50.000 1.29 0.00 0.00 4.40
150 151 2.290260 CCAGGGATGACACTTAAGCACA 60.290 50.000 1.29 0.90 0.00 4.57
151 152 3.005554 CAGGGATGACACTTAAGCACAG 58.994 50.000 1.29 0.00 0.00 3.66
152 153 2.906389 AGGGATGACACTTAAGCACAGA 59.094 45.455 1.29 0.00 0.00 3.41
153 154 3.055530 AGGGATGACACTTAAGCACAGAG 60.056 47.826 1.29 0.00 0.00 3.35
154 155 3.055819 GGGATGACACTTAAGCACAGAGA 60.056 47.826 1.29 0.00 0.00 3.10
155 156 3.929610 GGATGACACTTAAGCACAGAGAC 59.070 47.826 1.29 0.00 0.00 3.36
156 157 4.322349 GGATGACACTTAAGCACAGAGACT 60.322 45.833 1.29 0.00 0.00 3.24
157 158 4.672587 TGACACTTAAGCACAGAGACTT 57.327 40.909 1.29 0.00 0.00 3.01
158 159 4.371786 TGACACTTAAGCACAGAGACTTG 58.628 43.478 1.29 0.00 0.00 3.16
159 160 4.099419 TGACACTTAAGCACAGAGACTTGA 59.901 41.667 1.29 0.00 0.00 3.02
160 161 5.220710 ACACTTAAGCACAGAGACTTGAT 57.779 39.130 1.29 0.00 0.00 2.57
161 162 5.233988 ACACTTAAGCACAGAGACTTGATC 58.766 41.667 1.29 0.00 0.00 2.92
162 163 4.629200 CACTTAAGCACAGAGACTTGATCC 59.371 45.833 1.29 0.00 0.00 3.36
163 164 4.284490 ACTTAAGCACAGAGACTTGATCCA 59.716 41.667 1.29 0.00 0.00 3.41
164 165 3.996921 AAGCACAGAGACTTGATCCAT 57.003 42.857 0.00 0.00 0.00 3.41
165 166 3.996921 AGCACAGAGACTTGATCCATT 57.003 42.857 0.00 0.00 0.00 3.16
166 167 3.871485 AGCACAGAGACTTGATCCATTC 58.129 45.455 0.00 0.00 0.00 2.67
167 168 2.606725 GCACAGAGACTTGATCCATTCG 59.393 50.000 0.00 0.00 0.00 3.34
168 169 3.193263 CACAGAGACTTGATCCATTCGG 58.807 50.000 0.00 0.00 0.00 4.30
169 170 2.169352 ACAGAGACTTGATCCATTCGGG 59.831 50.000 0.00 0.00 38.37 5.14
170 171 2.169352 CAGAGACTTGATCCATTCGGGT 59.831 50.000 0.00 0.00 38.11 5.28
171 172 2.432510 AGAGACTTGATCCATTCGGGTC 59.567 50.000 0.00 0.00 43.54 4.46
172 173 1.137086 AGACTTGATCCATTCGGGTCG 59.863 52.381 0.00 0.00 46.61 4.79
173 174 0.178068 ACTTGATCCATTCGGGTCGG 59.822 55.000 0.00 0.00 46.61 4.79
174 175 0.532862 CTTGATCCATTCGGGTCGGG 60.533 60.000 0.00 0.00 46.61 5.14
175 176 1.268992 TTGATCCATTCGGGTCGGGT 61.269 55.000 0.00 0.00 46.61 5.28
176 177 1.069258 GATCCATTCGGGTCGGGTC 59.931 63.158 0.00 0.00 31.02 4.46
177 178 2.694829 GATCCATTCGGGTCGGGTCG 62.695 65.000 0.00 0.00 31.02 4.79
179 180 4.143333 CATTCGGGTCGGGTCGCT 62.143 66.667 0.00 0.00 0.00 4.93
180 181 2.440796 ATTCGGGTCGGGTCGCTA 60.441 61.111 0.00 0.00 0.00 4.26
181 182 2.779033 ATTCGGGTCGGGTCGCTAC 61.779 63.158 0.00 0.00 0.00 3.58
182 183 4.720902 TCGGGTCGGGTCGCTACA 62.721 66.667 0.00 0.00 0.00 2.74
183 184 4.189188 CGGGTCGGGTCGCTACAG 62.189 72.222 0.00 0.00 0.00 2.74
184 185 3.834799 GGGTCGGGTCGCTACAGG 61.835 72.222 0.00 0.00 0.00 4.00
185 186 4.509737 GGTCGGGTCGCTACAGGC 62.510 72.222 0.00 0.00 37.64 4.85
186 187 3.755628 GTCGGGTCGCTACAGGCA 61.756 66.667 0.00 0.00 41.91 4.75
187 188 3.755628 TCGGGTCGCTACAGGCAC 61.756 66.667 0.00 0.00 41.91 5.01
188 189 4.063967 CGGGTCGCTACAGGCACA 62.064 66.667 0.00 0.00 41.91 4.57
189 190 2.345991 GGGTCGCTACAGGCACAA 59.654 61.111 0.00 0.00 41.91 3.33
190 191 1.302192 GGGTCGCTACAGGCACAAA 60.302 57.895 0.00 0.00 41.91 2.83
191 192 1.574702 GGGTCGCTACAGGCACAAAC 61.575 60.000 0.00 0.00 41.91 2.93
192 193 1.574702 GGTCGCTACAGGCACAAACC 61.575 60.000 0.00 0.00 41.91 3.27
193 194 0.882927 GTCGCTACAGGCACAAACCA 60.883 55.000 0.00 0.00 41.91 3.67
194 195 0.036164 TCGCTACAGGCACAAACCAT 59.964 50.000 0.00 0.00 41.91 3.55
195 196 0.447801 CGCTACAGGCACAAACCATC 59.552 55.000 0.00 0.00 41.91 3.51
196 197 1.533625 GCTACAGGCACAAACCATCA 58.466 50.000 0.00 0.00 41.35 3.07
197 198 1.200020 GCTACAGGCACAAACCATCAC 59.800 52.381 0.00 0.00 41.35 3.06
198 199 1.464608 CTACAGGCACAAACCATCACG 59.535 52.381 0.00 0.00 0.00 4.35
199 200 0.179032 ACAGGCACAAACCATCACGA 60.179 50.000 0.00 0.00 0.00 4.35
200 201 1.167851 CAGGCACAAACCATCACGAT 58.832 50.000 0.00 0.00 0.00 3.73
201 202 1.131126 CAGGCACAAACCATCACGATC 59.869 52.381 0.00 0.00 0.00 3.69
202 203 0.096976 GGCACAAACCATCACGATCG 59.903 55.000 14.88 14.88 0.00 3.69
203 204 1.075542 GCACAAACCATCACGATCGA 58.924 50.000 24.34 0.00 0.00 3.59
204 205 1.201921 GCACAAACCATCACGATCGAC 60.202 52.381 24.34 0.00 0.00 4.20
205 206 2.065512 CACAAACCATCACGATCGACA 58.934 47.619 24.34 7.73 0.00 4.35
206 207 2.066262 ACAAACCATCACGATCGACAC 58.934 47.619 24.34 0.00 0.00 3.67
207 208 2.065512 CAAACCATCACGATCGACACA 58.934 47.619 24.34 2.14 0.00 3.72
208 209 2.448926 AACCATCACGATCGACACAA 57.551 45.000 24.34 2.08 0.00 3.33
209 210 2.448926 ACCATCACGATCGACACAAA 57.551 45.000 24.34 0.20 0.00 2.83
210 211 2.972625 ACCATCACGATCGACACAAAT 58.027 42.857 24.34 2.69 0.00 2.32
211 212 4.118093 ACCATCACGATCGACACAAATA 57.882 40.909 24.34 0.00 0.00 1.40
212 213 4.693283 ACCATCACGATCGACACAAATAT 58.307 39.130 24.34 0.00 0.00 1.28
213 214 5.838529 ACCATCACGATCGACACAAATATA 58.161 37.500 24.34 0.00 0.00 0.86
214 215 6.455647 ACCATCACGATCGACACAAATATAT 58.544 36.000 24.34 0.00 0.00 0.86
215 216 6.366061 ACCATCACGATCGACACAAATATATG 59.634 38.462 24.34 4.80 0.00 1.78
216 217 6.183360 CCATCACGATCGACACAAATATATGG 60.183 42.308 24.34 13.36 0.00 2.74
217 218 5.838529 TCACGATCGACACAAATATATGGT 58.161 37.500 24.34 0.00 0.00 3.55
218 219 6.277605 TCACGATCGACACAAATATATGGTT 58.722 36.000 24.34 0.00 0.00 3.67
219 220 6.200097 TCACGATCGACACAAATATATGGTTG 59.800 38.462 24.34 2.99 0.00 3.77
220 221 6.019075 CACGATCGACACAAATATATGGTTGT 60.019 38.462 24.34 0.00 38.49 3.32
221 222 7.168469 CACGATCGACACAAATATATGGTTGTA 59.832 37.037 24.34 0.00 35.81 2.41
222 223 7.707464 ACGATCGACACAAATATATGGTTGTAA 59.293 33.333 24.34 0.00 35.81 2.41
223 224 8.708742 CGATCGACACAAATATATGGTTGTAAT 58.291 33.333 10.26 0.00 35.81 1.89
225 226 8.950208 TCGACACAAATATATGGTTGTAATCA 57.050 30.769 3.09 0.00 35.81 2.57
226 227 9.554395 TCGACACAAATATATGGTTGTAATCAT 57.446 29.630 3.09 0.00 35.81 2.45
238 239 7.801716 TGGTTGTAATCATAAGGCTTCATAC 57.198 36.000 1.30 2.25 0.00 2.39
239 240 6.770785 TGGTTGTAATCATAAGGCTTCATACC 59.229 38.462 1.30 5.38 0.00 2.73
240 241 6.206829 GGTTGTAATCATAAGGCTTCATACCC 59.793 42.308 1.30 0.00 0.00 3.69
241 242 6.508030 TGTAATCATAAGGCTTCATACCCA 57.492 37.500 1.30 0.00 0.00 4.51
242 243 7.090319 TGTAATCATAAGGCTTCATACCCAT 57.910 36.000 1.30 0.00 0.00 4.00
243 244 6.942005 TGTAATCATAAGGCTTCATACCCATG 59.058 38.462 1.30 0.00 0.00 3.66
244 245 3.754965 TCATAAGGCTTCATACCCATGC 58.245 45.455 1.30 0.00 31.73 4.06
245 246 3.395607 TCATAAGGCTTCATACCCATGCT 59.604 43.478 1.30 0.00 31.73 3.79
246 247 2.834638 AAGGCTTCATACCCATGCTT 57.165 45.000 0.00 0.00 31.73 3.91
247 248 3.951563 AAGGCTTCATACCCATGCTTA 57.048 42.857 0.00 0.00 31.73 3.09
248 249 4.459852 AAGGCTTCATACCCATGCTTAT 57.540 40.909 0.00 0.00 31.73 1.73
249 250 4.459852 AGGCTTCATACCCATGCTTATT 57.540 40.909 0.00 0.00 31.73 1.40
250 251 4.808042 AGGCTTCATACCCATGCTTATTT 58.192 39.130 0.00 0.00 31.73 1.40
251 252 5.211201 AGGCTTCATACCCATGCTTATTTT 58.789 37.500 0.00 0.00 31.73 1.82
252 253 5.662657 AGGCTTCATACCCATGCTTATTTTT 59.337 36.000 0.00 0.00 31.73 1.94
253 254 6.838612 AGGCTTCATACCCATGCTTATTTTTA 59.161 34.615 0.00 0.00 31.73 1.52
254 255 7.510343 AGGCTTCATACCCATGCTTATTTTTAT 59.490 33.333 0.00 0.00 31.73 1.40
255 256 8.150296 GGCTTCATACCCATGCTTATTTTTATT 58.850 33.333 0.00 0.00 31.73 1.40
282 283 7.865706 AAGTGTTTCTAGTGTCAACTTGATT 57.134 32.000 0.00 0.00 37.87 2.57
283 284 7.484035 AGTGTTTCTAGTGTCAACTTGATTC 57.516 36.000 0.00 0.00 37.87 2.52
284 285 6.483640 AGTGTTTCTAGTGTCAACTTGATTCC 59.516 38.462 0.00 0.00 37.87 3.01
285 286 5.465390 TGTTTCTAGTGTCAACTTGATTCCG 59.535 40.000 0.00 0.00 37.87 4.30
286 287 5.462530 TTCTAGTGTCAACTTGATTCCGA 57.537 39.130 0.00 0.00 37.87 4.55
287 288 5.661056 TCTAGTGTCAACTTGATTCCGAT 57.339 39.130 0.00 0.00 37.88 4.18
288 289 5.651530 TCTAGTGTCAACTTGATTCCGATC 58.348 41.667 0.00 0.00 37.88 3.69
289 290 3.600388 AGTGTCAACTTGATTCCGATCC 58.400 45.455 0.00 0.00 30.14 3.36
290 291 2.348666 GTGTCAACTTGATTCCGATCCG 59.651 50.000 0.00 0.00 0.00 4.18
291 292 6.940252 AGTGTCAACTTGATTCCGATCCGG 62.940 50.000 0.00 0.00 40.43 5.14
305 306 5.751243 CCGATCCGGTCAAAAATTAGAAT 57.249 39.130 0.00 0.00 42.73 2.40
306 307 5.748592 CCGATCCGGTCAAAAATTAGAATC 58.251 41.667 0.00 0.00 42.73 2.52
307 308 5.277828 CCGATCCGGTCAAAAATTAGAATCC 60.278 44.000 0.00 0.00 42.73 3.01
308 309 5.295787 CGATCCGGTCAAAAATTAGAATCCA 59.704 40.000 0.00 0.00 0.00 3.41
309 310 6.183360 CGATCCGGTCAAAAATTAGAATCCAA 60.183 38.462 0.00 0.00 0.00 3.53
310 311 7.468631 CGATCCGGTCAAAAATTAGAATCCAAT 60.469 37.037 0.00 0.00 0.00 3.16
311 312 7.475137 TCCGGTCAAAAATTAGAATCCAATT 57.525 32.000 0.00 0.00 0.00 2.32
312 313 7.543756 TCCGGTCAAAAATTAGAATCCAATTC 58.456 34.615 0.00 0.00 39.56 2.17
314 315 7.702348 CCGGTCAAAAATTAGAATCCAATTCTC 59.298 37.037 5.50 0.00 46.17 2.87
315 316 8.462016 CGGTCAAAAATTAGAATCCAATTCTCT 58.538 33.333 5.50 0.00 46.17 3.10
318 319 9.643693 TCAAAAATTAGAATCCAATTCTCTTGC 57.356 29.630 5.50 0.00 46.17 4.01
319 320 9.426837 CAAAAATTAGAATCCAATTCTCTTGCA 57.573 29.630 5.50 0.00 46.17 4.08
323 324 9.649167 AATTAGAATCCAATTCTCTTGCAAAAG 57.351 29.630 0.00 0.00 46.17 2.27
324 325 6.034161 AGAATCCAATTCTCTTGCAAAAGG 57.966 37.500 0.00 0.00 46.17 3.11
325 326 5.541484 AGAATCCAATTCTCTTGCAAAAGGT 59.459 36.000 0.00 0.00 46.17 3.50
326 327 5.813513 ATCCAATTCTCTTGCAAAAGGTT 57.186 34.783 0.00 0.00 0.00 3.50
327 328 5.612725 TCCAATTCTCTTGCAAAAGGTTT 57.387 34.783 0.00 0.00 0.00 3.27
328 329 5.988287 TCCAATTCTCTTGCAAAAGGTTTT 58.012 33.333 0.00 0.00 0.00 2.43
329 330 6.413892 TCCAATTCTCTTGCAAAAGGTTTTT 58.586 32.000 0.00 0.00 0.00 1.94
330 331 7.560368 TCCAATTCTCTTGCAAAAGGTTTTTA 58.440 30.769 0.00 0.00 0.00 1.52
331 332 7.710475 TCCAATTCTCTTGCAAAAGGTTTTTAG 59.290 33.333 0.00 0.00 0.00 1.85
332 333 7.710475 CCAATTCTCTTGCAAAAGGTTTTTAGA 59.290 33.333 0.00 0.00 0.00 2.10
333 334 9.097257 CAATTCTCTTGCAAAAGGTTTTTAGAA 57.903 29.630 0.00 0.00 0.00 2.10
334 335 9.665719 AATTCTCTTGCAAAAGGTTTTTAGAAA 57.334 25.926 0.00 0.00 0.00 2.52
335 336 8.474006 TTCTCTTGCAAAAGGTTTTTAGAAAC 57.526 30.769 0.00 0.26 43.50 2.78
336 337 7.836842 TCTCTTGCAAAAGGTTTTTAGAAACT 58.163 30.769 8.60 0.00 43.68 2.66
337 338 7.973944 TCTCTTGCAAAAGGTTTTTAGAAACTC 59.026 33.333 8.60 0.25 43.68 3.01
338 339 7.836842 TCTTGCAAAAGGTTTTTAGAAACTCT 58.163 30.769 8.60 2.34 43.68 3.24
339 340 8.311109 TCTTGCAAAAGGTTTTTAGAAACTCTT 58.689 29.630 8.60 7.53 43.68 2.85
340 341 9.581099 CTTGCAAAAGGTTTTTAGAAACTCTTA 57.419 29.630 8.60 0.00 43.68 2.10
341 342 8.920509 TGCAAAAGGTTTTTAGAAACTCTTAC 57.079 30.769 8.60 5.41 43.68 2.34
342 343 8.745590 TGCAAAAGGTTTTTAGAAACTCTTACT 58.254 29.630 8.60 0.00 43.68 2.24
343 344 9.582431 GCAAAAGGTTTTTAGAAACTCTTACTT 57.418 29.630 8.60 1.30 43.68 2.24
359 360 6.374417 TCTTACTTAAAGAGCACCATCCTT 57.626 37.500 0.00 0.00 39.36 3.36
360 361 6.407202 TCTTACTTAAAGAGCACCATCCTTC 58.593 40.000 0.00 0.00 39.36 3.46
361 362 4.640771 ACTTAAAGAGCACCATCCTTCA 57.359 40.909 0.00 0.00 0.00 3.02
362 363 5.184892 ACTTAAAGAGCACCATCCTTCAT 57.815 39.130 0.00 0.00 0.00 2.57
363 364 4.946157 ACTTAAAGAGCACCATCCTTCATG 59.054 41.667 0.00 0.00 0.00 3.07
364 365 3.726557 AAAGAGCACCATCCTTCATGA 57.273 42.857 0.00 0.00 33.80 3.07
365 366 3.726557 AAGAGCACCATCCTTCATGAA 57.273 42.857 8.12 8.12 33.80 2.57
366 367 3.947612 AGAGCACCATCCTTCATGAAT 57.052 42.857 8.96 0.00 33.80 2.57
367 368 4.246712 AGAGCACCATCCTTCATGAATT 57.753 40.909 8.96 0.00 33.80 2.17
368 369 4.205587 AGAGCACCATCCTTCATGAATTC 58.794 43.478 8.96 0.00 33.80 2.17
369 370 2.947652 AGCACCATCCTTCATGAATTCG 59.052 45.455 8.96 0.00 33.80 3.34
370 371 2.945008 GCACCATCCTTCATGAATTCGA 59.055 45.455 8.96 5.60 33.80 3.71
371 372 3.242870 GCACCATCCTTCATGAATTCGAC 60.243 47.826 8.96 0.00 33.80 4.20
372 373 3.940852 CACCATCCTTCATGAATTCGACA 59.059 43.478 8.96 0.00 33.80 4.35
373 374 4.395854 CACCATCCTTCATGAATTCGACAA 59.604 41.667 8.96 0.00 33.80 3.18
374 375 4.396166 ACCATCCTTCATGAATTCGACAAC 59.604 41.667 8.96 0.00 33.80 3.32
375 376 4.637534 CCATCCTTCATGAATTCGACAACT 59.362 41.667 8.96 0.00 33.80 3.16
376 377 5.220739 CCATCCTTCATGAATTCGACAACTC 60.221 44.000 8.96 0.00 33.80 3.01
377 378 4.893608 TCCTTCATGAATTCGACAACTCA 58.106 39.130 8.96 0.00 0.00 3.41
378 379 4.931601 TCCTTCATGAATTCGACAACTCAG 59.068 41.667 8.96 0.00 0.00 3.35
379 380 4.093998 CCTTCATGAATTCGACAACTCAGG 59.906 45.833 8.96 0.00 0.00 3.86
380 381 3.599343 TCATGAATTCGACAACTCAGGG 58.401 45.455 0.04 0.00 0.00 4.45
381 382 3.007940 TCATGAATTCGACAACTCAGGGT 59.992 43.478 0.04 0.00 0.00 4.34
382 383 3.485463 TGAATTCGACAACTCAGGGTT 57.515 42.857 0.04 0.00 38.93 4.11
383 384 4.610605 TGAATTCGACAACTCAGGGTTA 57.389 40.909 0.04 0.00 36.23 2.85
384 385 4.312443 TGAATTCGACAACTCAGGGTTAC 58.688 43.478 0.04 0.00 36.23 2.50
385 386 2.825861 TTCGACAACTCAGGGTTACC 57.174 50.000 0.00 0.00 36.23 2.85
400 401 4.595986 GGGTTACCTATGAGAAAAAGGCA 58.404 43.478 0.00 0.00 33.42 4.75
401 402 5.014202 GGGTTACCTATGAGAAAAAGGCAA 58.986 41.667 0.00 0.00 33.42 4.52
402 403 5.479027 GGGTTACCTATGAGAAAAAGGCAAA 59.521 40.000 0.00 0.00 33.42 3.68
403 404 6.014925 GGGTTACCTATGAGAAAAAGGCAAAA 60.015 38.462 0.00 0.00 33.42 2.44
404 405 7.438564 GGTTACCTATGAGAAAAAGGCAAAAA 58.561 34.615 0.00 0.00 33.42 1.94
422 423 4.652679 AAAAATCTTTCTACTCCCCCGT 57.347 40.909 0.00 0.00 0.00 5.28
423 424 4.652679 AAAATCTTTCTACTCCCCCGTT 57.347 40.909 0.00 0.00 0.00 4.44
424 425 4.652679 AAATCTTTCTACTCCCCCGTTT 57.347 40.909 0.00 0.00 0.00 3.60
425 426 3.908643 ATCTTTCTACTCCCCCGTTTC 57.091 47.619 0.00 0.00 0.00 2.78
426 427 2.898662 TCTTTCTACTCCCCCGTTTCT 58.101 47.619 0.00 0.00 0.00 2.52
427 428 4.051661 TCTTTCTACTCCCCCGTTTCTA 57.948 45.455 0.00 0.00 0.00 2.10
428 429 4.419282 TCTTTCTACTCCCCCGTTTCTAA 58.581 43.478 0.00 0.00 0.00 2.10
429 430 4.840115 TCTTTCTACTCCCCCGTTTCTAAA 59.160 41.667 0.00 0.00 0.00 1.85
430 431 5.486419 TCTTTCTACTCCCCCGTTTCTAAAT 59.514 40.000 0.00 0.00 0.00 1.40
431 432 6.669154 TCTTTCTACTCCCCCGTTTCTAAATA 59.331 38.462 0.00 0.00 0.00 1.40
432 433 7.346436 TCTTTCTACTCCCCCGTTTCTAAATAT 59.654 37.037 0.00 0.00 0.00 1.28
433 434 6.415206 TCTACTCCCCCGTTTCTAAATATG 57.585 41.667 0.00 0.00 0.00 1.78
434 435 4.432980 ACTCCCCCGTTTCTAAATATGG 57.567 45.455 0.00 0.00 0.00 2.74
435 436 4.042174 ACTCCCCCGTTTCTAAATATGGA 58.958 43.478 0.00 0.00 0.00 3.41
436 437 4.102681 ACTCCCCCGTTTCTAAATATGGAG 59.897 45.833 0.00 0.00 41.99 3.86
437 438 3.146847 CCCCCGTTTCTAAATATGGAGC 58.853 50.000 0.00 0.00 0.00 4.70
438 439 3.434453 CCCCCGTTTCTAAATATGGAGCA 60.434 47.826 0.00 0.00 0.00 4.26
439 440 4.204012 CCCCGTTTCTAAATATGGAGCAA 58.796 43.478 0.00 0.00 0.00 3.91
440 441 4.642885 CCCCGTTTCTAAATATGGAGCAAA 59.357 41.667 0.00 0.00 0.00 3.68
441 442 5.126384 CCCCGTTTCTAAATATGGAGCAAAA 59.874 40.000 0.00 0.00 0.00 2.44
442 443 6.183360 CCCCGTTTCTAAATATGGAGCAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
443 444 6.697019 CCCGTTTCTAAATATGGAGCAAAATG 59.303 38.462 0.00 0.00 0.00 2.32
444 445 7.416213 CCCGTTTCTAAATATGGAGCAAAATGA 60.416 37.037 0.00 0.00 0.00 2.57
445 446 7.973388 CCGTTTCTAAATATGGAGCAAAATGAA 59.027 33.333 0.00 0.00 0.00 2.57
446 447 9.520204 CGTTTCTAAATATGGAGCAAAATGAAT 57.480 29.630 0.00 0.00 0.00 2.57
455 456 7.649533 ATGGAGCAAAATGAATGAATCTACA 57.350 32.000 0.00 0.00 0.00 2.74
456 457 6.855836 TGGAGCAAAATGAATGAATCTACAC 58.144 36.000 0.00 0.00 0.00 2.90
457 458 6.660521 TGGAGCAAAATGAATGAATCTACACT 59.339 34.615 0.00 0.00 0.00 3.55
458 459 7.177216 TGGAGCAAAATGAATGAATCTACACTT 59.823 33.333 0.00 0.00 0.00 3.16
459 460 8.031277 GGAGCAAAATGAATGAATCTACACTTT 58.969 33.333 0.00 0.00 0.00 2.66
541 542 9.680315 CTAAGACAAACTTATATCTAGGAACGG 57.320 37.037 0.00 0.00 39.86 4.44
542 543 7.893124 AGACAAACTTATATCTAGGAACGGA 57.107 36.000 0.00 0.00 0.00 4.69
543 544 7.714703 AGACAAACTTATATCTAGGAACGGAC 58.285 38.462 0.00 0.00 0.00 4.79
544 545 7.341256 AGACAAACTTATATCTAGGAACGGACA 59.659 37.037 0.00 0.00 0.00 4.02
611 612 9.705290 TCAGAACTTTAATTAATTCAAAAGGGC 57.295 29.630 20.10 13.99 34.07 5.19
628 629 1.512926 GGCCGAATTATGATCGCAGT 58.487 50.000 0.00 0.00 38.93 4.40
708 714 2.355818 GGGCAGAAAAGGAGGTATTCGT 60.356 50.000 0.00 0.00 0.00 3.85
765 771 5.668558 AGTGCGTTTGACTTTACCTAAAG 57.331 39.130 3.66 3.66 46.12 1.85
862 868 0.183492 GCCAGAAGCCATGATACCCA 59.817 55.000 0.00 0.00 34.35 4.51
925 931 1.878102 GCACGTCTCCACCACTTCATT 60.878 52.381 0.00 0.00 0.00 2.57
976 990 3.535629 CTTCCCTCCACGCTGCACA 62.536 63.158 0.00 0.00 0.00 4.57
1219 1253 2.443957 CTTCAACGTTGCCACCTCGC 62.444 60.000 23.47 0.00 0.00 5.03
1233 1267 1.674057 CTCGCTCCTCTTTGTGGGT 59.326 57.895 0.00 0.00 0.00 4.51
1236 1270 0.320374 CGCTCCTCTTTGTGGGTGTA 59.680 55.000 0.00 0.00 0.00 2.90
1269 1303 1.633774 TCTTGGTCGGCTTCTTCTCT 58.366 50.000 0.00 0.00 0.00 3.10
1428 1462 2.506217 GACGTCGCTGCGATGGAA 60.506 61.111 37.68 12.42 45.74 3.53
1726 1760 4.072913 CGGTGATCAACGTCGAGG 57.927 61.111 24.93 3.03 36.64 4.63
1730 1764 1.429463 GTGATCAACGTCGAGGCTTT 58.571 50.000 4.75 0.00 0.00 3.51
1731 1765 1.126846 GTGATCAACGTCGAGGCTTTG 59.873 52.381 4.75 3.67 0.00 2.77
1756 1790 2.507484 CAGCACCAGTTGAAGATTCCA 58.493 47.619 0.00 0.00 0.00 3.53
2127 2161 3.133003 GGCAAGAGGAGAAGTACTATGCA 59.867 47.826 0.00 0.00 0.00 3.96
2259 2297 1.396996 CGGTGAAGCCAAGGAAATACG 59.603 52.381 0.00 0.00 36.97 3.06
2406 2446 9.570468 TCCGACTCTCTGTACATAAGTAAATAT 57.430 33.333 0.00 0.00 30.67 1.28
2553 2593 1.714794 AGTGCACAACGATAGCAGAC 58.285 50.000 21.04 0.00 39.21 3.51
2637 2677 3.568430 GCCATGAGATGATGAGCAATTGA 59.432 43.478 10.34 0.00 0.00 2.57
2683 2723 4.216257 GGAGCTAATTTGCAGTTGACTTGA 59.784 41.667 14.27 0.00 34.99 3.02
2760 2800 4.569943 TGCAAACTTGTAACCAAAGCAAA 58.430 34.783 0.00 0.00 0.00 3.68
2816 2856 4.202326 ACGGTGGAGACAGAAAACAATACT 60.202 41.667 0.00 0.00 44.46 2.12
2818 2858 4.455877 GGTGGAGACAGAAAACAATACTGG 59.544 45.833 0.00 0.00 44.46 4.00
2819 2859 5.063880 GTGGAGACAGAAAACAATACTGGT 58.936 41.667 0.00 0.00 44.46 4.00
2820 2860 5.049405 GTGGAGACAGAAAACAATACTGGTG 60.049 44.000 0.00 0.00 44.46 4.17
2821 2861 4.083271 GGAGACAGAAAACAATACTGGTGC 60.083 45.833 0.00 0.00 36.17 5.01
2853 2893 4.521130 TGATACCTGTGTGACTCTGAAC 57.479 45.455 0.00 0.00 0.00 3.18
3016 3057 9.884636 AGCCCTATAAAAATTTGGTTAAATGAC 57.115 29.630 0.00 0.00 36.65 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.231235 GGTTGTGGATTCCCATCAACAC 59.769 50.000 23.71 15.48 42.27 3.32
1 2 2.109834 AGGTTGTGGATTCCCATCAACA 59.890 45.455 23.71 11.31 45.56 3.33
2 3 2.807676 AGGTTGTGGATTCCCATCAAC 58.192 47.619 18.67 18.67 45.68 3.18
3 4 3.164268 CAAGGTTGTGGATTCCCATCAA 58.836 45.455 0.00 1.05 45.68 2.57
4 5 2.109834 ACAAGGTTGTGGATTCCCATCA 59.890 45.455 0.00 0.00 45.68 3.07
5 6 2.807676 ACAAGGTTGTGGATTCCCATC 58.192 47.619 0.00 0.00 45.68 3.51
6 7 2.999185 ACAAGGTTGTGGATTCCCAT 57.001 45.000 0.00 0.00 45.68 4.00
7 8 2.765689 AACAAGGTTGTGGATTCCCA 57.234 45.000 0.00 0.00 41.31 4.37
8 9 3.763057 AGTAACAAGGTTGTGGATTCCC 58.237 45.455 0.00 0.00 41.31 3.97
9 10 4.217767 GGAAGTAACAAGGTTGTGGATTCC 59.782 45.833 13.31 13.31 41.31 3.01
10 11 4.083484 CGGAAGTAACAAGGTTGTGGATTC 60.083 45.833 0.00 1.76 41.31 2.52
11 12 3.818773 CGGAAGTAACAAGGTTGTGGATT 59.181 43.478 0.00 0.00 41.31 3.01
12 13 3.408634 CGGAAGTAACAAGGTTGTGGAT 58.591 45.455 0.00 0.00 41.31 3.41
14 15 1.265905 GCGGAAGTAACAAGGTTGTGG 59.734 52.381 0.00 0.00 41.31 4.17
15 16 2.218603 AGCGGAAGTAACAAGGTTGTG 58.781 47.619 0.00 0.00 41.31 3.33
17 18 5.390613 CAAATAGCGGAAGTAACAAGGTTG 58.609 41.667 0.00 0.00 0.00 3.77
18 19 4.457949 CCAAATAGCGGAAGTAACAAGGTT 59.542 41.667 0.00 0.00 0.00 3.50
20 21 4.258543 TCCAAATAGCGGAAGTAACAAGG 58.741 43.478 0.00 0.00 0.00 3.61
21 22 6.093495 TCAATCCAAATAGCGGAAGTAACAAG 59.907 38.462 0.00 0.00 35.77 3.16
24 25 5.007724 CCTCAATCCAAATAGCGGAAGTAAC 59.992 44.000 0.00 0.00 35.77 2.50
25 26 5.123227 CCTCAATCCAAATAGCGGAAGTAA 58.877 41.667 0.00 0.00 35.77 2.24
26 27 4.163458 ACCTCAATCCAAATAGCGGAAGTA 59.837 41.667 0.00 0.00 35.77 2.24
27 28 3.054361 ACCTCAATCCAAATAGCGGAAGT 60.054 43.478 0.00 0.00 35.77 3.01
28 29 3.545703 ACCTCAATCCAAATAGCGGAAG 58.454 45.455 0.00 0.00 35.77 3.46
29 30 3.644966 ACCTCAATCCAAATAGCGGAA 57.355 42.857 0.00 0.00 35.77 4.30
30 31 4.764050 TTACCTCAATCCAAATAGCGGA 57.236 40.909 0.00 0.00 36.84 5.54
31 32 6.231211 ACTATTACCTCAATCCAAATAGCGG 58.769 40.000 0.00 0.00 34.80 5.52
32 33 9.436957 AATACTATTACCTCAATCCAAATAGCG 57.563 33.333 0.00 0.00 34.80 4.26
65 66 9.959721 AACAGAGGTAAATCACATGTATAAAGT 57.040 29.630 0.00 0.00 0.00 2.66
75 76 9.832445 GAGGATTTATAACAGAGGTAAATCACA 57.168 33.333 15.05 0.00 42.43 3.58
76 77 8.979574 CGAGGATTTATAACAGAGGTAAATCAC 58.020 37.037 15.05 9.55 42.43 3.06
77 78 8.920174 TCGAGGATTTATAACAGAGGTAAATCA 58.080 33.333 15.05 0.00 42.43 2.57
78 79 9.413048 CTCGAGGATTTATAACAGAGGTAAATC 57.587 37.037 3.91 8.01 41.06 2.17
79 80 8.925338 ACTCGAGGATTTATAACAGAGGTAAAT 58.075 33.333 18.41 0.00 32.39 1.40
80 81 8.302515 ACTCGAGGATTTATAACAGAGGTAAA 57.697 34.615 18.41 0.00 0.00 2.01
81 82 7.893124 ACTCGAGGATTTATAACAGAGGTAA 57.107 36.000 18.41 0.00 0.00 2.85
82 83 8.216423 AGTACTCGAGGATTTATAACAGAGGTA 58.784 37.037 18.41 0.00 0.00 3.08
83 84 7.013464 CAGTACTCGAGGATTTATAACAGAGGT 59.987 40.741 18.41 0.00 0.00 3.85
84 85 7.013464 ACAGTACTCGAGGATTTATAACAGAGG 59.987 40.741 18.41 0.00 0.00 3.69
85 86 7.858382 CACAGTACTCGAGGATTTATAACAGAG 59.142 40.741 18.41 0.00 0.00 3.35
86 87 7.338703 ACACAGTACTCGAGGATTTATAACAGA 59.661 37.037 18.41 0.00 0.00 3.41
87 88 7.432545 CACACAGTACTCGAGGATTTATAACAG 59.567 40.741 18.41 0.00 0.00 3.16
88 89 7.094075 ACACACAGTACTCGAGGATTTATAACA 60.094 37.037 18.41 0.00 0.00 2.41
89 90 7.220300 CACACACAGTACTCGAGGATTTATAAC 59.780 40.741 18.41 0.00 0.00 1.89
90 91 7.094075 ACACACACAGTACTCGAGGATTTATAA 60.094 37.037 18.41 0.00 0.00 0.98
91 92 6.376299 ACACACACAGTACTCGAGGATTTATA 59.624 38.462 18.41 0.00 0.00 0.98
92 93 5.185249 ACACACACAGTACTCGAGGATTTAT 59.815 40.000 18.41 0.00 0.00 1.40
93 94 4.521639 ACACACACAGTACTCGAGGATTTA 59.478 41.667 18.41 0.00 0.00 1.40
94 95 3.321111 ACACACACAGTACTCGAGGATTT 59.679 43.478 18.41 0.00 0.00 2.17
95 96 2.891580 ACACACACAGTACTCGAGGATT 59.108 45.455 18.41 0.87 0.00 3.01
96 97 2.488545 GACACACACAGTACTCGAGGAT 59.511 50.000 18.41 0.00 0.00 3.24
97 98 1.878088 GACACACACAGTACTCGAGGA 59.122 52.381 18.41 4.89 0.00 3.71
98 99 1.607148 TGACACACACAGTACTCGAGG 59.393 52.381 18.41 0.59 0.00 4.63
99 100 2.918549 GCTGACACACACAGTACTCGAG 60.919 54.545 11.84 11.84 37.64 4.04
100 101 1.001706 GCTGACACACACAGTACTCGA 60.002 52.381 0.00 0.00 37.64 4.04
101 102 1.269051 TGCTGACACACACAGTACTCG 60.269 52.381 0.00 0.00 37.64 4.18
102 103 2.509052 TGCTGACACACACAGTACTC 57.491 50.000 0.00 0.00 37.64 2.59
103 104 3.306088 GGTATGCTGACACACACAGTACT 60.306 47.826 0.00 0.00 37.64 2.73
104 105 2.993899 GGTATGCTGACACACACAGTAC 59.006 50.000 0.00 0.00 37.64 2.73
105 106 2.352323 CGGTATGCTGACACACACAGTA 60.352 50.000 0.00 0.00 37.64 2.74
106 107 1.605457 CGGTATGCTGACACACACAGT 60.605 52.381 0.00 0.00 37.64 3.55
107 108 1.070821 CGGTATGCTGACACACACAG 58.929 55.000 0.00 0.00 38.27 3.66
108 109 0.676736 TCGGTATGCTGACACACACA 59.323 50.000 0.00 0.00 0.00 3.72
109 110 1.927174 GATCGGTATGCTGACACACAC 59.073 52.381 0.00 0.00 31.98 3.82
110 111 1.134818 GGATCGGTATGCTGACACACA 60.135 52.381 0.00 0.00 31.98 3.72
111 112 1.134818 TGGATCGGTATGCTGACACAC 60.135 52.381 0.00 0.00 31.98 3.82
112 113 1.136891 CTGGATCGGTATGCTGACACA 59.863 52.381 0.00 0.00 31.98 3.72
113 114 1.539065 CCTGGATCGGTATGCTGACAC 60.539 57.143 0.00 0.00 31.98 3.67
114 115 0.752658 CCTGGATCGGTATGCTGACA 59.247 55.000 0.00 0.00 31.98 3.58
115 116 0.034059 CCCTGGATCGGTATGCTGAC 59.966 60.000 0.00 0.00 31.98 3.51
116 117 0.105709 TCCCTGGATCGGTATGCTGA 60.106 55.000 0.00 0.00 0.00 4.26
117 118 0.979665 ATCCCTGGATCGGTATGCTG 59.020 55.000 0.00 0.00 0.00 4.41
118 119 0.979665 CATCCCTGGATCGGTATGCT 59.020 55.000 0.00 0.00 31.62 3.79
119 120 0.976641 TCATCCCTGGATCGGTATGC 59.023 55.000 0.00 0.00 31.62 3.14
120 121 1.970640 TGTCATCCCTGGATCGGTATG 59.029 52.381 0.00 0.00 31.62 2.39
121 122 1.971357 GTGTCATCCCTGGATCGGTAT 59.029 52.381 0.00 0.00 31.62 2.73
122 123 1.063190 AGTGTCATCCCTGGATCGGTA 60.063 52.381 0.00 0.00 31.62 4.02
123 124 0.325671 AGTGTCATCCCTGGATCGGT 60.326 55.000 0.00 0.00 31.62 4.69
124 125 0.833287 AAGTGTCATCCCTGGATCGG 59.167 55.000 0.00 0.00 31.62 4.18
125 126 3.722147 CTTAAGTGTCATCCCTGGATCG 58.278 50.000 0.00 0.00 31.62 3.69
126 127 3.118261 TGCTTAAGTGTCATCCCTGGATC 60.118 47.826 4.02 0.00 31.62 3.36
127 128 2.846206 TGCTTAAGTGTCATCCCTGGAT 59.154 45.455 4.02 0.00 34.81 3.41
128 129 2.027192 GTGCTTAAGTGTCATCCCTGGA 60.027 50.000 4.02 0.00 0.00 3.86
129 130 2.290260 TGTGCTTAAGTGTCATCCCTGG 60.290 50.000 4.02 0.00 0.00 4.45
130 131 3.005554 CTGTGCTTAAGTGTCATCCCTG 58.994 50.000 4.02 0.00 0.00 4.45
131 132 2.906389 TCTGTGCTTAAGTGTCATCCCT 59.094 45.455 4.02 0.00 0.00 4.20
132 133 3.055819 TCTCTGTGCTTAAGTGTCATCCC 60.056 47.826 4.02 0.00 0.00 3.85
133 134 3.929610 GTCTCTGTGCTTAAGTGTCATCC 59.070 47.826 4.02 0.00 0.00 3.51
134 135 4.815269 AGTCTCTGTGCTTAAGTGTCATC 58.185 43.478 4.02 0.00 0.00 2.92
135 136 4.881019 AGTCTCTGTGCTTAAGTGTCAT 57.119 40.909 4.02 0.00 0.00 3.06
136 137 4.099419 TCAAGTCTCTGTGCTTAAGTGTCA 59.901 41.667 4.02 0.89 0.00 3.58
137 138 4.621991 TCAAGTCTCTGTGCTTAAGTGTC 58.378 43.478 4.02 0.00 0.00 3.67
138 139 4.672587 TCAAGTCTCTGTGCTTAAGTGT 57.327 40.909 4.02 0.00 0.00 3.55
139 140 4.629200 GGATCAAGTCTCTGTGCTTAAGTG 59.371 45.833 4.02 0.00 0.00 3.16
140 141 4.284490 TGGATCAAGTCTCTGTGCTTAAGT 59.716 41.667 4.02 0.00 0.00 2.24
141 142 4.825422 TGGATCAAGTCTCTGTGCTTAAG 58.175 43.478 0.00 0.00 0.00 1.85
142 143 4.890158 TGGATCAAGTCTCTGTGCTTAA 57.110 40.909 0.00 0.00 0.00 1.85
143 144 5.423015 GAATGGATCAAGTCTCTGTGCTTA 58.577 41.667 0.00 0.00 0.00 3.09
144 145 3.996921 ATGGATCAAGTCTCTGTGCTT 57.003 42.857 0.00 0.00 0.00 3.91
145 146 3.678252 CGAATGGATCAAGTCTCTGTGCT 60.678 47.826 0.00 0.00 0.00 4.40
146 147 2.606725 CGAATGGATCAAGTCTCTGTGC 59.393 50.000 0.00 0.00 0.00 4.57
147 148 3.193263 CCGAATGGATCAAGTCTCTGTG 58.807 50.000 0.00 0.00 37.49 3.66
148 149 2.169352 CCCGAATGGATCAAGTCTCTGT 59.831 50.000 0.00 0.00 37.49 3.41
149 150 2.169352 ACCCGAATGGATCAAGTCTCTG 59.831 50.000 0.00 0.00 37.49 3.35
150 151 2.432510 GACCCGAATGGATCAAGTCTCT 59.567 50.000 0.00 0.00 37.49 3.10
151 152 2.799917 CGACCCGAATGGATCAAGTCTC 60.800 54.545 0.00 0.00 37.49 3.36
152 153 1.137086 CGACCCGAATGGATCAAGTCT 59.863 52.381 0.00 0.00 37.49 3.24
153 154 1.571919 CGACCCGAATGGATCAAGTC 58.428 55.000 0.00 0.00 37.49 3.01
154 155 0.178068 CCGACCCGAATGGATCAAGT 59.822 55.000 0.00 0.00 37.49 3.16
155 156 0.532862 CCCGACCCGAATGGATCAAG 60.533 60.000 0.00 0.00 37.49 3.02
156 157 1.268992 ACCCGACCCGAATGGATCAA 61.269 55.000 0.00 0.00 37.49 2.57
157 158 1.682451 GACCCGACCCGAATGGATCA 61.682 60.000 0.00 0.00 37.49 2.92
158 159 1.069258 GACCCGACCCGAATGGATC 59.931 63.158 0.00 0.00 37.49 3.36
159 160 2.792947 CGACCCGACCCGAATGGAT 61.793 63.158 0.00 0.00 37.49 3.41
160 161 3.454573 CGACCCGACCCGAATGGA 61.455 66.667 0.00 0.00 37.49 3.41
162 163 2.777972 TAGCGACCCGACCCGAATG 61.778 63.158 0.00 0.00 0.00 2.67
163 164 2.440796 TAGCGACCCGACCCGAAT 60.441 61.111 0.00 0.00 0.00 3.34
164 165 3.443045 GTAGCGACCCGACCCGAA 61.443 66.667 0.00 0.00 0.00 4.30
165 166 4.720902 TGTAGCGACCCGACCCGA 62.721 66.667 0.00 0.00 0.00 5.14
166 167 4.189188 CTGTAGCGACCCGACCCG 62.189 72.222 0.00 0.00 0.00 5.28
167 168 3.834799 CCTGTAGCGACCCGACCC 61.835 72.222 0.00 0.00 0.00 4.46
168 169 4.509737 GCCTGTAGCGACCCGACC 62.510 72.222 0.00 0.00 0.00 4.79
177 178 1.200020 GTGATGGTTTGTGCCTGTAGC 59.800 52.381 0.00 0.00 44.14 3.58
178 179 1.464608 CGTGATGGTTTGTGCCTGTAG 59.535 52.381 0.00 0.00 0.00 2.74
179 180 1.070914 TCGTGATGGTTTGTGCCTGTA 59.929 47.619 0.00 0.00 0.00 2.74
180 181 0.179032 TCGTGATGGTTTGTGCCTGT 60.179 50.000 0.00 0.00 0.00 4.00
181 182 1.131126 GATCGTGATGGTTTGTGCCTG 59.869 52.381 0.00 0.00 0.00 4.85
182 183 1.453155 GATCGTGATGGTTTGTGCCT 58.547 50.000 0.00 0.00 0.00 4.75
183 184 0.096976 CGATCGTGATGGTTTGTGCC 59.903 55.000 7.03 0.00 0.00 5.01
184 185 1.075542 TCGATCGTGATGGTTTGTGC 58.924 50.000 15.94 0.00 0.00 4.57
185 186 2.065512 TGTCGATCGTGATGGTTTGTG 58.934 47.619 15.94 0.00 0.00 3.33
186 187 2.066262 GTGTCGATCGTGATGGTTTGT 58.934 47.619 15.94 0.00 0.00 2.83
187 188 2.065512 TGTGTCGATCGTGATGGTTTG 58.934 47.619 15.94 0.00 0.00 2.93
188 189 2.448926 TGTGTCGATCGTGATGGTTT 57.551 45.000 15.94 0.00 0.00 3.27
189 190 2.448926 TTGTGTCGATCGTGATGGTT 57.551 45.000 15.94 0.00 0.00 3.67
190 191 2.448926 TTTGTGTCGATCGTGATGGT 57.551 45.000 15.94 0.00 0.00 3.55
191 192 6.183360 CCATATATTTGTGTCGATCGTGATGG 60.183 42.308 15.94 7.76 0.00 3.51
192 193 6.366061 ACCATATATTTGTGTCGATCGTGATG 59.634 38.462 15.94 2.86 0.00 3.07
193 194 6.455647 ACCATATATTTGTGTCGATCGTGAT 58.544 36.000 15.94 4.30 0.00 3.06
194 195 5.838529 ACCATATATTTGTGTCGATCGTGA 58.161 37.500 15.94 0.00 0.00 4.35
195 196 6.019075 ACAACCATATATTTGTGTCGATCGTG 60.019 38.462 15.94 1.98 34.61 4.35
196 197 6.046593 ACAACCATATATTTGTGTCGATCGT 58.953 36.000 15.94 0.00 34.61 3.73
197 198 6.525121 ACAACCATATATTTGTGTCGATCG 57.475 37.500 9.36 9.36 34.61 3.69
199 200 9.554395 TGATTACAACCATATATTTGTGTCGAT 57.446 29.630 11.46 3.17 36.61 3.59
200 201 8.950208 TGATTACAACCATATATTTGTGTCGA 57.050 30.769 11.46 0.00 36.61 4.20
212 213 9.502091 GTATGAAGCCTTATGATTACAACCATA 57.498 33.333 0.00 0.00 0.00 2.74
213 214 7.448469 GGTATGAAGCCTTATGATTACAACCAT 59.552 37.037 0.00 0.00 0.00 3.55
214 215 6.770785 GGTATGAAGCCTTATGATTACAACCA 59.229 38.462 0.00 0.00 0.00 3.67
215 216 6.206829 GGGTATGAAGCCTTATGATTACAACC 59.793 42.308 0.00 0.00 40.33 3.77
216 217 6.770785 TGGGTATGAAGCCTTATGATTACAAC 59.229 38.462 0.00 0.00 44.09 3.32
217 218 6.905736 TGGGTATGAAGCCTTATGATTACAA 58.094 36.000 0.00 0.00 44.09 2.41
218 219 6.508030 TGGGTATGAAGCCTTATGATTACA 57.492 37.500 0.00 0.00 44.09 2.41
219 220 6.127897 GCATGGGTATGAAGCCTTATGATTAC 60.128 42.308 0.00 0.00 44.09 1.89
220 221 5.945784 GCATGGGTATGAAGCCTTATGATTA 59.054 40.000 0.00 0.00 44.09 1.75
221 222 4.768968 GCATGGGTATGAAGCCTTATGATT 59.231 41.667 0.00 0.00 44.09 2.57
222 223 4.043812 AGCATGGGTATGAAGCCTTATGAT 59.956 41.667 0.00 0.00 44.09 2.45
223 224 3.395607 AGCATGGGTATGAAGCCTTATGA 59.604 43.478 0.00 0.00 44.09 2.15
224 225 3.759581 AGCATGGGTATGAAGCCTTATG 58.240 45.455 0.00 0.00 44.09 1.90
225 226 4.459852 AAGCATGGGTATGAAGCCTTAT 57.540 40.909 0.00 0.00 44.09 1.73
226 227 3.951563 AAGCATGGGTATGAAGCCTTA 57.048 42.857 0.00 0.00 44.09 2.69
227 228 2.834638 AAGCATGGGTATGAAGCCTT 57.165 45.000 0.00 0.00 44.09 4.35
228 229 4.459852 AATAAGCATGGGTATGAAGCCT 57.540 40.909 0.00 0.00 44.09 4.58
229 230 5.535753 AAAATAAGCATGGGTATGAAGCC 57.464 39.130 0.00 0.00 44.02 4.35
256 257 9.561069 AATCAAGTTGACACTAGAAACACTTAT 57.439 29.630 7.96 0.00 30.68 1.73
257 258 8.958119 AATCAAGTTGACACTAGAAACACTTA 57.042 30.769 7.96 0.00 30.68 2.24
258 259 7.012421 GGAATCAAGTTGACACTAGAAACACTT 59.988 37.037 7.96 0.00 30.68 3.16
259 260 6.483640 GGAATCAAGTTGACACTAGAAACACT 59.516 38.462 7.96 0.00 30.68 3.55
260 261 6.564125 CGGAATCAAGTTGACACTAGAAACAC 60.564 42.308 7.96 0.00 30.68 3.32
261 262 5.465390 CGGAATCAAGTTGACACTAGAAACA 59.535 40.000 7.96 0.00 30.68 2.83
262 263 5.694910 TCGGAATCAAGTTGACACTAGAAAC 59.305 40.000 7.96 0.00 30.68 2.78
263 264 5.849510 TCGGAATCAAGTTGACACTAGAAA 58.150 37.500 7.96 0.00 30.68 2.52
264 265 5.462530 TCGGAATCAAGTTGACACTAGAA 57.537 39.130 7.96 0.00 30.68 2.10
265 266 5.394224 GGATCGGAATCAAGTTGACACTAGA 60.394 44.000 7.96 5.16 33.21 2.43
266 267 4.806247 GGATCGGAATCAAGTTGACACTAG 59.194 45.833 7.96 0.00 33.21 2.57
267 268 4.676986 CGGATCGGAATCAAGTTGACACTA 60.677 45.833 7.96 0.00 33.21 2.74
268 269 3.600388 GGATCGGAATCAAGTTGACACT 58.400 45.455 7.96 0.00 33.21 3.55
269 270 2.348666 CGGATCGGAATCAAGTTGACAC 59.651 50.000 7.96 5.21 33.21 3.67
270 271 2.616960 CGGATCGGAATCAAGTTGACA 58.383 47.619 7.96 0.00 33.21 3.58
284 285 5.295787 TGGATTCTAATTTTTGACCGGATCG 59.704 40.000 9.46 0.00 0.00 3.69
285 286 6.693315 TGGATTCTAATTTTTGACCGGATC 57.307 37.500 9.46 2.18 0.00 3.36
286 287 7.660030 ATTGGATTCTAATTTTTGACCGGAT 57.340 32.000 9.46 0.00 0.00 4.18
287 288 7.475137 AATTGGATTCTAATTTTTGACCGGA 57.525 32.000 9.46 0.00 0.00 5.14
288 289 7.755582 GAATTGGATTCTAATTTTTGACCGG 57.244 36.000 9.09 0.00 36.37 5.28
302 303 5.787380 ACCTTTTGCAAGAGAATTGGATTC 58.213 37.500 18.08 0.00 39.56 2.52
303 304 5.813513 ACCTTTTGCAAGAGAATTGGATT 57.186 34.783 18.08 0.00 30.57 3.01
304 305 5.813513 AACCTTTTGCAAGAGAATTGGAT 57.186 34.783 18.08 0.00 30.57 3.41
305 306 5.612725 AAACCTTTTGCAAGAGAATTGGA 57.387 34.783 18.08 0.00 30.57 3.53
306 307 6.682423 AAAAACCTTTTGCAAGAGAATTGG 57.318 33.333 18.08 4.72 30.57 3.16
307 308 8.647143 TCTAAAAACCTTTTGCAAGAGAATTG 57.353 30.769 18.08 4.21 30.57 2.32
308 309 9.665719 TTTCTAAAAACCTTTTGCAAGAGAATT 57.334 25.926 18.08 9.17 30.57 2.17
309 310 9.098355 GTTTCTAAAAACCTTTTGCAAGAGAAT 57.902 29.630 18.08 3.44 39.10 2.40
310 311 8.311109 AGTTTCTAAAAACCTTTTGCAAGAGAA 58.689 29.630 18.08 0.00 44.87 2.87
311 312 7.836842 AGTTTCTAAAAACCTTTTGCAAGAGA 58.163 30.769 18.08 0.00 44.87 3.10
312 313 7.976175 AGAGTTTCTAAAAACCTTTTGCAAGAG 59.024 33.333 9.98 9.98 44.87 2.85
313 314 7.836842 AGAGTTTCTAAAAACCTTTTGCAAGA 58.163 30.769 0.00 0.00 44.87 3.02
314 315 8.479313 AAGAGTTTCTAAAAACCTTTTGCAAG 57.521 30.769 0.00 0.00 44.87 4.01
315 316 9.361315 GTAAGAGTTTCTAAAAACCTTTTGCAA 57.639 29.630 0.00 0.00 44.87 4.08
316 317 8.745590 AGTAAGAGTTTCTAAAAACCTTTTGCA 58.254 29.630 8.82 0.00 44.87 4.08
317 318 9.582431 AAGTAAGAGTTTCTAAAAACCTTTTGC 57.418 29.630 8.82 0.00 44.87 3.68
336 337 6.013725 TGAAGGATGGTGCTCTTTAAGTAAGA 60.014 38.462 0.00 0.00 40.57 2.10
337 338 6.173339 TGAAGGATGGTGCTCTTTAAGTAAG 58.827 40.000 0.00 0.00 35.04 2.34
338 339 6.121776 TGAAGGATGGTGCTCTTTAAGTAA 57.878 37.500 0.00 0.00 0.00 2.24
339 340 5.755409 TGAAGGATGGTGCTCTTTAAGTA 57.245 39.130 0.00 0.00 0.00 2.24
340 341 4.640771 TGAAGGATGGTGCTCTTTAAGT 57.359 40.909 0.00 0.00 0.00 2.24
341 342 5.188434 TCATGAAGGATGGTGCTCTTTAAG 58.812 41.667 0.00 0.00 32.26 1.85
342 343 5.178096 TCATGAAGGATGGTGCTCTTTAA 57.822 39.130 0.00 0.00 32.26 1.52
343 344 4.842531 TCATGAAGGATGGTGCTCTTTA 57.157 40.909 0.00 0.00 32.26 1.85
344 345 3.726557 TCATGAAGGATGGTGCTCTTT 57.273 42.857 0.00 0.00 32.26 2.52
345 346 3.726557 TTCATGAAGGATGGTGCTCTT 57.273 42.857 3.38 0.00 32.26 2.85
346 347 3.947612 ATTCATGAAGGATGGTGCTCT 57.052 42.857 14.54 0.00 32.26 4.09
347 348 3.003068 CGAATTCATGAAGGATGGTGCTC 59.997 47.826 14.54 0.00 32.26 4.26
348 349 2.947652 CGAATTCATGAAGGATGGTGCT 59.052 45.455 14.54 0.00 32.26 4.40
349 350 2.945008 TCGAATTCATGAAGGATGGTGC 59.055 45.455 14.54 0.00 32.26 5.01
350 351 3.940852 TGTCGAATTCATGAAGGATGGTG 59.059 43.478 14.54 0.00 32.26 4.17
351 352 4.220693 TGTCGAATTCATGAAGGATGGT 57.779 40.909 14.54 0.00 32.26 3.55
352 353 4.637534 AGTTGTCGAATTCATGAAGGATGG 59.362 41.667 14.54 4.58 32.26 3.51
353 354 5.352293 TGAGTTGTCGAATTCATGAAGGATG 59.648 40.000 14.54 4.08 0.00 3.51
354 355 5.491070 TGAGTTGTCGAATTCATGAAGGAT 58.509 37.500 14.54 2.61 0.00 3.24
355 356 4.893608 TGAGTTGTCGAATTCATGAAGGA 58.106 39.130 14.54 8.25 0.00 3.36
356 357 4.093998 CCTGAGTTGTCGAATTCATGAAGG 59.906 45.833 14.54 6.00 28.37 3.46
357 358 4.093998 CCCTGAGTTGTCGAATTCATGAAG 59.906 45.833 14.54 0.40 28.37 3.02
358 359 4.002982 CCCTGAGTTGTCGAATTCATGAA 58.997 43.478 11.26 11.26 28.37 2.57
359 360 3.007940 ACCCTGAGTTGTCGAATTCATGA 59.992 43.478 6.22 0.00 28.37 3.07
360 361 3.338249 ACCCTGAGTTGTCGAATTCATG 58.662 45.455 6.22 0.00 28.37 3.07
361 362 3.703001 ACCCTGAGTTGTCGAATTCAT 57.297 42.857 6.22 0.00 28.37 2.57
362 363 3.485463 AACCCTGAGTTGTCGAATTCA 57.515 42.857 6.22 0.00 37.29 2.57
363 364 3.683340 GGTAACCCTGAGTTGTCGAATTC 59.317 47.826 0.00 0.00 39.67 2.17
364 365 3.326880 AGGTAACCCTGAGTTGTCGAATT 59.673 43.478 0.00 0.00 40.58 2.17
365 366 2.904434 AGGTAACCCTGAGTTGTCGAAT 59.096 45.455 0.00 0.00 40.58 3.34
366 367 2.322658 AGGTAACCCTGAGTTGTCGAA 58.677 47.619 0.00 0.00 40.58 3.71
367 368 2.005370 AGGTAACCCTGAGTTGTCGA 57.995 50.000 0.00 0.00 40.58 4.20
368 369 3.446161 TCATAGGTAACCCTGAGTTGTCG 59.554 47.826 0.00 0.00 42.67 4.35
369 370 4.710375 TCTCATAGGTAACCCTGAGTTGTC 59.290 45.833 9.37 0.00 42.67 3.18
370 371 4.684724 TCTCATAGGTAACCCTGAGTTGT 58.315 43.478 9.37 0.00 42.67 3.32
371 372 5.677319 TTCTCATAGGTAACCCTGAGTTG 57.323 43.478 9.37 3.74 42.67 3.16
372 373 6.697641 TTTTCTCATAGGTAACCCTGAGTT 57.302 37.500 9.37 0.00 42.67 3.01
373 374 6.296489 CCTTTTTCTCATAGGTAACCCTGAGT 60.296 42.308 9.37 0.00 42.67 3.41
374 375 6.116126 CCTTTTTCTCATAGGTAACCCTGAG 58.884 44.000 6.83 6.83 42.67 3.35
375 376 5.572885 GCCTTTTTCTCATAGGTAACCCTGA 60.573 44.000 0.00 0.00 42.67 3.86
376 377 4.640647 GCCTTTTTCTCATAGGTAACCCTG 59.359 45.833 0.00 0.00 42.67 4.45
377 378 4.291249 TGCCTTTTTCTCATAGGTAACCCT 59.709 41.667 0.00 0.00 45.51 4.34
378 379 4.595986 TGCCTTTTTCTCATAGGTAACCC 58.404 43.478 0.00 0.00 37.17 4.11
379 380 6.584185 TTTGCCTTTTTCTCATAGGTAACC 57.416 37.500 0.00 0.00 34.11 2.85
401 402 4.652679 ACGGGGGAGTAGAAAGATTTTT 57.347 40.909 0.00 0.00 0.00 1.94
402 403 4.652679 AACGGGGGAGTAGAAAGATTTT 57.347 40.909 0.00 0.00 0.00 1.82
403 404 4.288887 AGAAACGGGGGAGTAGAAAGATTT 59.711 41.667 0.00 0.00 0.00 2.17
404 405 3.844804 AGAAACGGGGGAGTAGAAAGATT 59.155 43.478 0.00 0.00 0.00 2.40
405 406 3.451890 AGAAACGGGGGAGTAGAAAGAT 58.548 45.455 0.00 0.00 0.00 2.40
406 407 2.898662 AGAAACGGGGGAGTAGAAAGA 58.101 47.619 0.00 0.00 0.00 2.52
407 408 4.813750 TTAGAAACGGGGGAGTAGAAAG 57.186 45.455 0.00 0.00 0.00 2.62
408 409 5.767277 ATTTAGAAACGGGGGAGTAGAAA 57.233 39.130 0.00 0.00 0.00 2.52
409 410 6.183361 CCATATTTAGAAACGGGGGAGTAGAA 60.183 42.308 0.00 0.00 0.00 2.10
410 411 5.306160 CCATATTTAGAAACGGGGGAGTAGA 59.694 44.000 0.00 0.00 0.00 2.59
411 412 5.306160 TCCATATTTAGAAACGGGGGAGTAG 59.694 44.000 0.00 0.00 0.00 2.57
412 413 5.218179 TCCATATTTAGAAACGGGGGAGTA 58.782 41.667 0.00 0.00 0.00 2.59
413 414 4.042174 TCCATATTTAGAAACGGGGGAGT 58.958 43.478 0.00 0.00 0.00 3.85
414 415 4.642429 CTCCATATTTAGAAACGGGGGAG 58.358 47.826 0.00 0.00 34.11 4.30
415 416 3.181448 GCTCCATATTTAGAAACGGGGGA 60.181 47.826 0.00 0.00 0.00 4.81
416 417 3.146847 GCTCCATATTTAGAAACGGGGG 58.853 50.000 0.00 0.00 0.00 5.40
417 418 3.815809 TGCTCCATATTTAGAAACGGGG 58.184 45.455 0.00 0.00 0.00 5.73
418 419 5.828299 TTTGCTCCATATTTAGAAACGGG 57.172 39.130 0.00 0.00 0.00 5.28
419 420 7.479980 TCATTTTGCTCCATATTTAGAAACGG 58.520 34.615 0.00 0.00 0.00 4.44
420 421 8.909708 TTCATTTTGCTCCATATTTAGAAACG 57.090 30.769 0.00 0.00 0.00 3.60
429 430 9.358406 TGTAGATTCATTCATTTTGCTCCATAT 57.642 29.630 0.00 0.00 0.00 1.78
430 431 8.623903 GTGTAGATTCATTCATTTTGCTCCATA 58.376 33.333 0.00 0.00 0.00 2.74
431 432 7.341256 AGTGTAGATTCATTCATTTTGCTCCAT 59.659 33.333 0.00 0.00 0.00 3.41
432 433 6.660521 AGTGTAGATTCATTCATTTTGCTCCA 59.339 34.615 0.00 0.00 0.00 3.86
433 434 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
434 435 8.976986 AAAGTGTAGATTCATTCATTTTGCTC 57.023 30.769 0.00 0.00 0.00 4.26
515 516 9.680315 CCGTTCCTAGATATAAGTTTGTCTTAG 57.320 37.037 0.00 0.00 41.22 2.18
519 520 7.486647 TGTCCGTTCCTAGATATAAGTTTGTC 58.513 38.462 0.00 0.00 0.00 3.18
521 522 8.888579 ATTGTCCGTTCCTAGATATAAGTTTG 57.111 34.615 0.00 0.00 0.00 2.93
522 523 8.701895 TGATTGTCCGTTCCTAGATATAAGTTT 58.298 33.333 0.00 0.00 0.00 2.66
524 525 7.506261 AGTGATTGTCCGTTCCTAGATATAAGT 59.494 37.037 0.00 0.00 0.00 2.24
525 526 7.887381 AGTGATTGTCCGTTCCTAGATATAAG 58.113 38.462 0.00 0.00 0.00 1.73
527 528 7.834881 AAGTGATTGTCCGTTCCTAGATATA 57.165 36.000 0.00 0.00 0.00 0.86
528 529 6.732896 AAGTGATTGTCCGTTCCTAGATAT 57.267 37.500 0.00 0.00 0.00 1.63
529 530 7.649533 TTAAGTGATTGTCCGTTCCTAGATA 57.350 36.000 0.00 0.00 0.00 1.98
530 531 6.540438 TTAAGTGATTGTCCGTTCCTAGAT 57.460 37.500 0.00 0.00 0.00 1.98
531 532 5.988310 TTAAGTGATTGTCCGTTCCTAGA 57.012 39.130 0.00 0.00 0.00 2.43
532 533 5.063564 GCTTTAAGTGATTGTCCGTTCCTAG 59.936 44.000 0.00 0.00 0.00 3.02
533 534 4.933400 GCTTTAAGTGATTGTCCGTTCCTA 59.067 41.667 0.00 0.00 0.00 2.94
534 535 3.751698 GCTTTAAGTGATTGTCCGTTCCT 59.248 43.478 0.00 0.00 0.00 3.36
536 537 3.500680 TGGCTTTAAGTGATTGTCCGTTC 59.499 43.478 0.00 0.00 0.00 3.95
538 539 2.812011 GTGGCTTTAAGTGATTGTCCGT 59.188 45.455 0.00 0.00 0.00 4.69
539 540 3.074412 AGTGGCTTTAAGTGATTGTCCG 58.926 45.455 0.00 0.00 0.00 4.79
540 541 4.762251 AGAAGTGGCTTTAAGTGATTGTCC 59.238 41.667 0.00 0.00 0.00 4.02
541 542 5.106515 GGAGAAGTGGCTTTAAGTGATTGTC 60.107 44.000 0.00 0.00 0.00 3.18
542 543 4.762251 GGAGAAGTGGCTTTAAGTGATTGT 59.238 41.667 0.00 0.00 0.00 2.71
543 544 4.761739 TGGAGAAGTGGCTTTAAGTGATTG 59.238 41.667 0.00 0.00 0.00 2.67
544 545 4.762251 GTGGAGAAGTGGCTTTAAGTGATT 59.238 41.667 0.00 0.00 0.00 2.57
611 612 3.123050 TCACACTGCGATCATAATTCGG 58.877 45.455 0.00 0.00 37.10 4.30
628 629 3.268072 TGTGGGGTTTATGGATCATCACA 59.732 43.478 0.00 0.00 0.00 3.58
708 714 1.914764 GACGTGTAGGGGTTGGGGA 60.915 63.158 0.00 0.00 0.00 4.81
765 771 7.094975 TGCTAACATAACATGTGTGTTTAGGAC 60.095 37.037 25.66 15.41 46.07 3.85
766 772 6.937465 TGCTAACATAACATGTGTGTTTAGGA 59.063 34.615 25.66 19.70 46.07 2.94
767 773 7.139896 TGCTAACATAACATGTGTGTTTAGG 57.860 36.000 25.66 18.87 46.07 2.69
770 776 9.973450 TTTAATGCTAACATAACATGTGTGTTT 57.027 25.926 25.66 14.99 47.00 2.83
862 868 7.336176 ACGAGTAGGAGTCAAAGTTTTCTTTTT 59.664 33.333 0.00 0.00 46.55 1.94
902 908 0.107410 AAGTGGTGGAGACGTGCAAA 60.107 50.000 0.00 0.00 0.00 3.68
925 931 0.036388 GTGCGATGGAGAGGGAACAA 60.036 55.000 0.00 0.00 0.00 2.83
1021 1055 2.277501 GCGGTGAATGCATGTCGC 60.278 61.111 16.27 16.27 42.89 5.19
1023 1057 1.137404 GTGGCGGTGAATGCATGTC 59.863 57.895 0.00 0.72 0.00 3.06
1219 1253 3.262420 CGATTACACCCACAAAGAGGAG 58.738 50.000 0.00 0.00 0.00 3.69
1233 1267 1.568504 AGAAGAGGGCCACGATTACA 58.431 50.000 6.18 0.00 0.00 2.41
1236 1270 0.035056 CCAAGAAGAGGGCCACGATT 60.035 55.000 6.18 0.00 0.00 3.34
1599 1633 3.161450 ACTGGGCAGGTGACGTGT 61.161 61.111 7.15 0.00 0.00 4.49
1726 1760 0.610232 ACTGGTGCTGGATCCAAAGC 60.610 55.000 17.00 17.04 39.96 3.51
1730 1764 0.770499 TTCAACTGGTGCTGGATCCA 59.230 50.000 15.27 15.27 0.00 3.41
1731 1765 1.003580 TCTTCAACTGGTGCTGGATCC 59.996 52.381 4.20 4.20 0.00 3.36
1756 1790 1.217511 CCTGCTGCTGATCAGACGT 59.782 57.895 27.04 0.00 45.72 4.34
1978 2012 3.990806 CGACAACGCGCGGAACAA 61.991 61.111 35.22 0.00 0.00 2.83
2001 2035 2.743928 CCCAGCTCACTTCGGTGC 60.744 66.667 0.00 0.00 44.94 5.01
2086 2120 2.821366 GGCGTCATCCTGCACCAG 60.821 66.667 0.00 0.00 0.00 4.00
2127 2161 2.661866 GCGAACGTGAGGCTGTGT 60.662 61.111 0.00 0.00 0.00 3.72
2235 2273 3.058160 CCTTGGCTTCACCGCTGG 61.058 66.667 0.00 0.00 43.94 4.85
2553 2593 1.407979 GCTGCTGATTTCCAAGATGGG 59.592 52.381 0.00 0.00 38.32 4.00
2637 2677 4.420522 AAAACAACACTTCCATGGCAAT 57.579 36.364 6.96 0.00 0.00 3.56
2641 2681 4.370917 CTCCAAAAACAACACTTCCATGG 58.629 43.478 4.97 4.97 0.00 3.66
2683 2723 7.127032 GGGAATGGATCTATTCATGGACTAGAT 59.873 40.741 27.05 10.48 37.29 1.98
2760 2800 5.368145 TCAGTCACAAAGTATGAACAAGCT 58.632 37.500 0.00 0.00 0.00 3.74
2821 2861 2.032924 CACAGGTATCATGCAGCATGTG 59.967 50.000 30.38 23.39 41.98 3.21
2853 2893 4.825546 AAGATCTGCTTGTGACAAGTTG 57.174 40.909 24.51 17.35 34.93 3.16
3008 3049 6.156748 TCCGCAGCTATTAGAGTCATTTAA 57.843 37.500 0.00 0.00 0.00 1.52
3016 3057 2.890808 TGGTTCCGCAGCTATTAGAG 57.109 50.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.