Multiple sequence alignment - TraesCS4D01G198500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G198500 chr4D 100.000 4444 0 0 1 4444 344860321 344864764 0.000000e+00 8207.0
1 TraesCS4D01G198500 chr4D 99.310 145 0 1 4244 4387 485141504 485141360 1.230000e-65 261.0
2 TraesCS4D01G198500 chr4A 89.899 1584 107 25 2671 4244 120571620 120573160 0.000000e+00 1989.0
3 TraesCS4D01G198500 chr4A 90.850 1377 84 22 430 1783 120569221 120570578 0.000000e+00 1807.0
4 TraesCS4D01G198500 chr4A 91.005 945 41 9 1776 2688 120570601 120571533 0.000000e+00 1234.0
5 TraesCS4D01G198500 chr4A 94.972 179 9 0 94 272 120568861 120569039 9.410000e-72 281.0
6 TraesCS4D01G198500 chr4A 93.103 58 4 0 4387 4444 120573159 120573216 7.920000e-13 86.1
7 TraesCS4D01G198500 chr4A 94.737 38 2 0 26 63 120568825 120568862 4.800000e-05 60.2
8 TraesCS4D01G198500 chr4B 91.680 1214 66 17 430 1634 426775792 426774605 0.000000e+00 1650.0
9 TraesCS4D01G198500 chr4B 92.954 1036 57 12 2685 3715 426773110 426772086 0.000000e+00 1495.0
10 TraesCS4D01G198500 chr4B 90.451 953 41 11 1776 2688 426774158 426773216 0.000000e+00 1210.0
11 TraesCS4D01G198500 chr4B 96.117 206 8 0 88 293 426775867 426776072 1.980000e-88 337.0
12 TraesCS4D01G198500 chr4B 98.611 144 1 1 4244 4386 525327706 525327563 2.050000e-63 254.0
13 TraesCS4D01G198500 chr4B 97.902 143 2 1 4244 4386 665242091 665241950 3.430000e-61 246.0
14 TraesCS4D01G198500 chr4B 94.839 155 7 1 1633 1786 426774332 426774178 1.600000e-59 241.0
15 TraesCS4D01G198500 chr2D 99.306 144 0 1 4244 4386 247111297 247111440 4.410000e-65 259.0
16 TraesCS4D01G198500 chr6D 97.917 144 3 0 4244 4387 445211187 445211044 2.650000e-62 250.0
17 TraesCS4D01G198500 chr5B 97.917 144 3 0 4244 4387 288167728 288167871 2.650000e-62 250.0
18 TraesCS4D01G198500 chrUn 97.279 147 1 2 4244 4389 91673667 91673811 3.430000e-61 246.0
19 TraesCS4D01G198500 chr7D 97.279 147 1 2 4244 4389 137608042 137608186 3.430000e-61 246.0
20 TraesCS4D01G198500 chr1D 97.279 147 0 1 4244 4386 49359115 49358969 3.430000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G198500 chr4D 344860321 344864764 4443 False 8207.00 8207 100.000000 1 4444 1 chr4D.!!$F1 4443
1 TraesCS4D01G198500 chr4A 120568825 120573216 4391 False 909.55 1989 92.427667 26 4444 6 chr4A.!!$F1 4418
2 TraesCS4D01G198500 chr4B 426772086 426775792 3706 True 1149.00 1650 92.481000 430 3715 4 chr4B.!!$R3 3285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 999 0.036010 CCATCCACCTCGCTGTCTTT 60.036 55.000 0.0 0.0 0.00 2.52 F
1439 1519 0.899720 TGACAGTACCCATTCGGTCC 59.100 55.000 0.0 0.0 43.58 4.46 F
1801 2185 1.144057 CCTGACGCTCGGCCTAATT 59.856 57.895 0.0 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2185 1.228306 CCGCCCACCAAAACCACTA 60.228 57.895 0.00 0.00 0.00 2.74 R
3079 3614 1.203187 ACCACTCAGAAGCTCCCTGTA 60.203 52.381 13.65 3.34 33.57 2.74 R
3665 4205 1.378531 TCATGCGCAAGGTACCATTC 58.621 50.000 17.11 0.00 38.28 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.110967 CAGTGATCGCCAGGCCAAG 61.111 63.158 5.01 0.00 0.00 3.61
33 34 2.268920 GTGATCGCCAGGCCAAGA 59.731 61.111 5.01 0.00 0.00 3.02
61 62 5.636121 TCAACGTCATAGCATTAAACGTCTT 59.364 36.000 0.00 0.00 44.92 3.01
62 63 5.450376 ACGTCATAGCATTAAACGTCTTG 57.550 39.130 0.00 0.00 42.34 3.02
63 64 4.328983 ACGTCATAGCATTAAACGTCTTGG 59.671 41.667 0.00 0.00 42.34 3.61
64 65 4.588278 GTCATAGCATTAAACGTCTTGGC 58.412 43.478 0.00 0.00 0.00 4.52
65 66 3.625764 TCATAGCATTAAACGTCTTGGCC 59.374 43.478 0.00 0.00 0.00 5.36
66 67 0.802494 AGCATTAAACGTCTTGGCCG 59.198 50.000 0.00 0.00 0.00 6.13
67 68 0.179174 GCATTAAACGTCTTGGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
68 69 0.450184 CATTAAACGTCTTGGCCGGG 59.550 55.000 2.18 0.00 0.00 5.73
69 70 0.678684 ATTAAACGTCTTGGCCGGGG 60.679 55.000 2.18 0.00 0.00 5.73
70 71 2.751357 TTAAACGTCTTGGCCGGGGG 62.751 60.000 2.18 0.00 0.00 5.40
73 74 4.653888 CGTCTTGGCCGGGGGTTT 62.654 66.667 2.18 0.00 0.00 3.27
74 75 2.675423 GTCTTGGCCGGGGGTTTC 60.675 66.667 2.18 0.00 0.00 2.78
75 76 4.338710 TCTTGGCCGGGGGTTTCG 62.339 66.667 2.18 0.00 0.00 3.46
76 77 4.338710 CTTGGCCGGGGGTTTCGA 62.339 66.667 2.18 0.00 0.00 3.71
77 78 4.646877 TTGGCCGGGGGTTTCGAC 62.647 66.667 2.18 0.00 0.00 4.20
81 82 4.016706 CCGGGGGTTTCGACAGCT 62.017 66.667 0.00 0.00 0.00 4.24
82 83 2.652095 CCGGGGGTTTCGACAGCTA 61.652 63.158 0.00 0.00 0.00 3.32
83 84 1.520666 CGGGGGTTTCGACAGCTAT 59.479 57.895 0.26 0.00 0.00 2.97
84 85 0.810031 CGGGGGTTTCGACAGCTATG 60.810 60.000 0.26 0.00 0.00 2.23
85 86 1.095807 GGGGGTTTCGACAGCTATGC 61.096 60.000 0.26 0.00 0.00 3.14
86 87 1.095807 GGGGTTTCGACAGCTATGCC 61.096 60.000 0.26 0.00 0.00 4.40
87 88 0.392461 GGGTTTCGACAGCTATGCCA 60.392 55.000 0.26 0.00 0.00 4.92
88 89 1.448985 GGTTTCGACAGCTATGCCAA 58.551 50.000 0.00 0.00 0.00 4.52
89 90 1.130561 GGTTTCGACAGCTATGCCAAC 59.869 52.381 0.00 0.00 0.00 3.77
90 91 1.804151 GTTTCGACAGCTATGCCAACA 59.196 47.619 0.00 0.00 0.00 3.33
91 92 2.177394 TTCGACAGCTATGCCAACAA 57.823 45.000 0.00 0.00 0.00 2.83
92 93 1.725641 TCGACAGCTATGCCAACAAG 58.274 50.000 0.00 0.00 0.00 3.16
111 112 3.294038 AGTGTACTGCTATCGTAGGGT 57.706 47.619 0.00 0.00 0.00 4.34
126 127 3.625099 GGTAGGAACCAGCGGCTA 58.375 61.111 0.26 0.00 45.98 3.93
128 129 1.328430 GGTAGGAACCAGCGGCTACT 61.328 60.000 0.26 0.00 45.98 2.57
148 149 1.032657 ACGGAGAGACGGGACAGATG 61.033 60.000 0.00 0.00 38.39 2.90
204 205 3.833732 AGAGGCATCATTCATCTGCATT 58.166 40.909 0.00 0.00 37.64 3.56
215 216 5.509832 TTCATCTGCATTCTATATGGGCT 57.490 39.130 0.00 0.00 0.00 5.19
218 219 6.409704 TCATCTGCATTCTATATGGGCTAAC 58.590 40.000 0.00 0.00 0.00 2.34
246 247 8.115490 AGATGAAAAATTAGACCAAACCTCTG 57.885 34.615 0.00 0.00 0.00 3.35
248 249 5.010617 TGAAAAATTAGACCAAACCTCTGGC 59.989 40.000 0.00 0.00 40.45 4.85
272 273 2.799540 GAAACGGATCGGTCGCAGC 61.800 63.158 6.36 0.00 0.00 5.25
290 291 4.973055 GGCACCGCGTACACACCA 62.973 66.667 4.92 0.00 0.00 4.17
291 292 2.740826 GCACCGCGTACACACCAT 60.741 61.111 4.92 0.00 0.00 3.55
292 293 2.322081 GCACCGCGTACACACCATT 61.322 57.895 4.92 0.00 0.00 3.16
293 294 1.495509 CACCGCGTACACACCATTG 59.504 57.895 4.92 0.00 0.00 2.82
294 295 1.669760 ACCGCGTACACACCATTGG 60.670 57.895 4.92 0.00 0.00 3.16
295 296 1.669760 CCGCGTACACACCATTGGT 60.670 57.895 4.92 1.37 35.62 3.67
296 297 0.390078 CCGCGTACACACCATTGGTA 60.390 55.000 8.31 0.00 32.11 3.25
297 298 0.996462 CGCGTACACACCATTGGTAG 59.004 55.000 8.31 6.96 32.11 3.18
298 299 1.670674 CGCGTACACACCATTGGTAGT 60.671 52.381 8.31 12.53 32.11 2.73
299 300 1.997606 GCGTACACACCATTGGTAGTC 59.002 52.381 8.31 4.53 32.11 2.59
300 301 2.353406 GCGTACACACCATTGGTAGTCT 60.353 50.000 8.31 0.31 32.11 3.24
301 302 3.863400 GCGTACACACCATTGGTAGTCTT 60.863 47.826 8.31 2.08 32.11 3.01
302 303 3.924686 CGTACACACCATTGGTAGTCTTC 59.075 47.826 8.31 4.69 32.11 2.87
303 304 4.321750 CGTACACACCATTGGTAGTCTTCT 60.322 45.833 8.31 0.00 32.11 2.85
304 305 4.273148 ACACACCATTGGTAGTCTTCTC 57.727 45.455 8.31 0.00 32.11 2.87
305 306 3.646162 ACACACCATTGGTAGTCTTCTCA 59.354 43.478 8.31 0.00 32.11 3.27
306 307 3.997021 CACACCATTGGTAGTCTTCTCAC 59.003 47.826 8.31 0.00 32.11 3.51
307 308 3.254060 CACCATTGGTAGTCTTCTCACG 58.746 50.000 8.31 0.00 32.11 4.35
308 309 2.271800 CCATTGGTAGTCTTCTCACGC 58.728 52.381 0.00 0.00 0.00 5.34
309 310 2.093973 CCATTGGTAGTCTTCTCACGCT 60.094 50.000 0.00 0.00 0.00 5.07
310 311 3.182967 CATTGGTAGTCTTCTCACGCTC 58.817 50.000 0.00 0.00 0.00 5.03
311 312 1.905637 TGGTAGTCTTCTCACGCTCA 58.094 50.000 0.00 0.00 0.00 4.26
312 313 1.540267 TGGTAGTCTTCTCACGCTCAC 59.460 52.381 0.00 0.00 0.00 3.51
314 315 0.168348 TAGTCTTCTCACGCTCACGC 59.832 55.000 0.00 0.00 45.53 5.34
315 316 1.081108 GTCTTCTCACGCTCACGCT 60.081 57.895 0.00 0.00 45.53 5.07
316 317 1.068287 GTCTTCTCACGCTCACGCTC 61.068 60.000 0.00 0.00 45.53 5.03
317 318 1.081175 CTTCTCACGCTCACGCTCA 60.081 57.895 0.00 0.00 45.53 4.26
343 344 0.592637 TAGTTCGCCAAAGACGACGA 59.407 50.000 0.00 0.00 39.67 4.20
345 346 2.012414 TTCGCCAAAGACGACGACG 61.012 57.895 5.58 5.58 39.67 5.12
347 348 3.033764 GCCAAAGACGACGACGCA 61.034 61.111 7.30 0.00 43.96 5.24
367 368 1.204941 ACATGCACCGGTAGTCTTCTC 59.795 52.381 6.87 0.00 0.00 2.87
369 370 1.334160 TGCACCGGTAGTCTTCTCAA 58.666 50.000 6.87 0.00 0.00 3.02
376 384 2.729467 CGGTAGTCTTCTCAAGCTCACG 60.729 54.545 0.00 0.00 0.00 4.35
582 646 3.697747 CCCGTACCAACCGGCTCA 61.698 66.667 0.00 0.00 44.13 4.26
621 685 2.241880 CGTGAAGCCGTGAACCGTT 61.242 57.895 0.00 0.00 33.66 4.44
689 753 4.641645 CAGCCGCACCACCTTCCA 62.642 66.667 0.00 0.00 0.00 3.53
743 808 3.155167 ACGGCCGATTCCCTCCTC 61.155 66.667 35.90 0.00 0.00 3.71
934 999 0.036010 CCATCCACCTCGCTGTCTTT 60.036 55.000 0.00 0.00 0.00 2.52
942 1007 2.872858 ACCTCGCTGTCTTTTTCTTCAC 59.127 45.455 0.00 0.00 0.00 3.18
945 1010 4.319118 CCTCGCTGTCTTTTTCTTCACTTC 60.319 45.833 0.00 0.00 0.00 3.01
961 1026 3.254035 TTCCCCCTCGCCTTCTCCT 62.254 63.158 0.00 0.00 0.00 3.69
962 1027 3.474570 CCCCCTCGCCTTCTCCTG 61.475 72.222 0.00 0.00 0.00 3.86
963 1028 4.168291 CCCCTCGCCTTCTCCTGC 62.168 72.222 0.00 0.00 0.00 4.85
964 1029 4.168291 CCCTCGCCTTCTCCTGCC 62.168 72.222 0.00 0.00 0.00 4.85
965 1030 4.168291 CCTCGCCTTCTCCTGCCC 62.168 72.222 0.00 0.00 0.00 5.36
966 1031 3.080121 CTCGCCTTCTCCTGCCCT 61.080 66.667 0.00 0.00 0.00 5.19
967 1032 3.077556 TCGCCTTCTCCTGCCCTC 61.078 66.667 0.00 0.00 0.00 4.30
971 1036 2.041928 CTTCTCCTGCCCTCCCCT 59.958 66.667 0.00 0.00 0.00 4.79
1020 1085 2.653087 GGCGAAGACCTACCCCGTT 61.653 63.158 0.00 0.00 0.00 4.44
1159 1227 3.688330 CGCGCGCGTTCGGATTAT 61.688 61.111 42.49 0.00 35.95 1.28
1160 1228 2.167918 GCGCGCGTTCGGATTATC 59.832 61.111 32.35 6.30 35.95 1.75
1161 1229 2.459904 CGCGCGTTCGGATTATCG 59.540 61.111 24.19 0.00 35.95 2.92
1162 1230 2.007114 CGCGCGTTCGGATTATCGA 61.007 57.895 24.19 0.00 37.38 3.59
1163 1231 1.481683 GCGCGTTCGGATTATCGAC 59.518 57.895 8.43 0.00 39.01 4.20
1164 1232 1.758966 CGCGTTCGGATTATCGACG 59.241 57.895 0.00 9.06 39.01 5.12
1204 1273 3.512724 CCTTTTTCATGGCCTGATCTGTT 59.487 43.478 3.32 0.00 32.72 3.16
1379 1458 1.762460 CCCCACCATCTCCTACGCT 60.762 63.158 0.00 0.00 0.00 5.07
1439 1519 0.899720 TGACAGTACCCATTCGGTCC 59.100 55.000 0.00 0.00 43.58 4.46
1444 1524 0.899720 GTACCCATTCGGTCCACTGA 59.100 55.000 0.00 0.00 43.58 3.41
1478 1558 1.739466 TGATTCATTTCTCCTGCGTGC 59.261 47.619 0.00 0.00 0.00 5.34
1578 1658 6.969993 TCTTAACCTTGGTTAACTTTGCAT 57.030 33.333 17.97 0.00 0.00 3.96
1596 1676 4.479158 TGCATTTTCCTCAGGGTTTTAGT 58.521 39.130 0.00 0.00 0.00 2.24
1597 1677 4.522789 TGCATTTTCCTCAGGGTTTTAGTC 59.477 41.667 0.00 0.00 0.00 2.59
1640 1994 1.547372 GGTGGTGCCGAGTTAACTAGA 59.453 52.381 16.38 0.00 0.00 2.43
1791 2175 2.101582 GGAGTTGTATGATCCTGACGCT 59.898 50.000 0.00 0.00 0.00 5.07
1801 2185 1.144057 CCTGACGCTCGGCCTAATT 59.856 57.895 0.00 0.00 0.00 1.40
1893 2277 8.721019 AGCTATAATATCCTCTAGTGTACGAC 57.279 38.462 0.00 0.00 0.00 4.34
1948 2332 3.747193 CACGTATTGTGGCATTCAGTTC 58.253 45.455 0.00 0.00 45.21 3.01
2523 2941 5.290493 TCCAATATCCGTTTGCTCACTAT 57.710 39.130 0.00 0.00 0.00 2.12
2547 2965 5.480205 AGAAGGCTTCTTCCTTAAACTACG 58.520 41.667 23.76 0.00 45.92 3.51
2572 2990 6.294176 GCAGTTGAACCATATTCTGTTTCACT 60.294 38.462 0.00 0.00 0.00 3.41
2824 3357 1.336755 CACACCCTGGTTAGTTTGCAC 59.663 52.381 0.00 0.00 0.00 4.57
2978 3513 3.296854 AGGAACCCTTTGAAGTTTGACC 58.703 45.455 0.00 0.00 0.00 4.02
3023 3558 3.449737 TCACTAGTACCTTGATTTCCCCG 59.550 47.826 0.00 0.00 0.00 5.73
3024 3559 2.169978 ACTAGTACCTTGATTTCCCCGC 59.830 50.000 0.00 0.00 0.00 6.13
3203 3738 0.601311 GCGGTATGTCTCCCATCAGC 60.601 60.000 0.00 0.00 34.86 4.26
3239 3774 7.119709 TGGTTGTAGTAGATATAAGCAGCAA 57.880 36.000 0.00 0.00 37.85 3.91
3264 3801 6.207417 ACAGGATGCTGATTATTATTTTCCCG 59.793 38.462 22.24 0.00 42.53 5.14
3279 3816 8.897872 TTATTTTCCCGTAATTCTGATAGGAC 57.102 34.615 0.00 0.00 0.00 3.85
3383 3920 5.680619 TGGGCATTGATAGTATCTTTCGTT 58.319 37.500 11.40 0.00 0.00 3.85
3411 3948 4.381292 CGACTGTCTTATCGGTTACCCTTT 60.381 45.833 6.21 0.00 34.67 3.11
3440 3977 2.232696 TGAATACAGGTACGCTGAAGCA 59.767 45.455 15.59 7.28 42.21 3.91
3448 3987 1.861575 GTACGCTGAAGCATAAGAGGC 59.138 52.381 2.79 0.00 42.21 4.70
3449 3988 0.807667 ACGCTGAAGCATAAGAGGCG 60.808 55.000 2.79 0.00 45.31 5.52
3482 4021 2.287849 GCTGCTACTATGTGCGATCAGA 60.288 50.000 0.00 0.00 0.00 3.27
3517 4056 2.158842 GCGTCTAGACTAGGGGTCAGTA 60.159 54.545 20.34 0.00 46.72 2.74
3520 4059 4.400120 GTCTAGACTAGGGGTCAGTATGG 58.600 52.174 15.91 0.00 46.72 2.74
3548 4087 5.047188 GCAGACTGCTAAGTAATCTTCTCC 58.953 45.833 20.41 0.00 40.96 3.71
3665 4205 6.090763 TCGTATGAAATGCAGTAGTGACTTTG 59.909 38.462 0.42 0.00 31.73 2.77
3666 4206 6.090763 CGTATGAAATGCAGTAGTGACTTTGA 59.909 38.462 0.42 0.00 31.73 2.69
3717 4257 6.036408 GTGCATTTTATTTTTGAGATGCCCTC 59.964 38.462 0.00 0.00 39.18 4.30
3727 4267 2.159043 TGAGATGCCCTCGATTTCAGTC 60.159 50.000 0.00 0.00 44.92 3.51
3734 4274 3.393800 CCCTCGATTTCAGTCGCAATAT 58.606 45.455 0.00 0.00 41.22 1.28
3773 4313 8.451748 GTTACAGGATCAAAGATACTGAAAACC 58.548 37.037 22.50 9.45 33.57 3.27
3778 4318 5.957842 TCAAAGATACTGAAAACCGCATT 57.042 34.783 0.00 0.00 0.00 3.56
3808 4348 2.484264 AGCTATTGTTGTTTGCCGACTC 59.516 45.455 0.00 0.00 0.00 3.36
3819 4359 1.795768 TGCCGACTCTTCACATTGTC 58.204 50.000 0.00 0.00 0.00 3.18
3822 4362 1.728971 CCGACTCTTCACATTGTCAGC 59.271 52.381 0.00 0.00 0.00 4.26
3823 4363 2.407090 CGACTCTTCACATTGTCAGCA 58.593 47.619 0.00 0.00 0.00 4.41
3824 4364 2.802247 CGACTCTTCACATTGTCAGCAA 59.198 45.455 0.00 0.00 39.16 3.91
3825 4365 3.363378 CGACTCTTCACATTGTCAGCAAC 60.363 47.826 0.00 0.00 37.44 4.17
3826 4366 2.880890 ACTCTTCACATTGTCAGCAACC 59.119 45.455 0.00 0.00 37.44 3.77
3827 4367 2.227388 CTCTTCACATTGTCAGCAACCC 59.773 50.000 0.00 0.00 37.44 4.11
3828 4368 1.955778 CTTCACATTGTCAGCAACCCA 59.044 47.619 0.00 0.00 37.44 4.51
3829 4369 2.064434 TCACATTGTCAGCAACCCAA 57.936 45.000 0.00 0.00 37.44 4.12
3830 4370 2.596346 TCACATTGTCAGCAACCCAAT 58.404 42.857 0.00 0.00 37.44 3.16
3831 4371 2.964464 TCACATTGTCAGCAACCCAATT 59.036 40.909 0.00 0.00 37.44 2.32
3832 4372 3.387374 TCACATTGTCAGCAACCCAATTT 59.613 39.130 0.00 0.00 37.44 1.82
3833 4373 4.128643 CACATTGTCAGCAACCCAATTTT 58.871 39.130 0.00 0.00 37.44 1.82
3834 4374 5.069648 TCACATTGTCAGCAACCCAATTTTA 59.930 36.000 0.00 0.00 37.44 1.52
3835 4375 5.933463 CACATTGTCAGCAACCCAATTTTAT 59.067 36.000 0.00 0.00 37.44 1.40
3836 4376 5.933463 ACATTGTCAGCAACCCAATTTTATG 59.067 36.000 0.00 0.00 37.44 1.90
3837 4377 4.533919 TGTCAGCAACCCAATTTTATGG 57.466 40.909 0.00 0.00 40.35 2.74
3838 4378 3.261580 GTCAGCAACCCAATTTTATGGC 58.738 45.455 0.00 0.00 39.26 4.40
3839 4379 2.094286 TCAGCAACCCAATTTTATGGCG 60.094 45.455 0.00 0.00 39.26 5.69
3840 4380 1.899142 AGCAACCCAATTTTATGGCGT 59.101 42.857 0.00 0.00 39.26 5.68
3841 4381 2.301583 AGCAACCCAATTTTATGGCGTT 59.698 40.909 0.00 0.00 39.26 4.84
3842 4382 2.414825 GCAACCCAATTTTATGGCGTTG 59.585 45.455 16.56 16.56 45.04 4.10
3843 4383 3.862642 GCAACCCAATTTTATGGCGTTGA 60.863 43.478 21.36 0.00 45.05 3.18
3844 4384 4.310769 CAACCCAATTTTATGGCGTTGAA 58.689 39.130 16.17 0.00 45.05 2.69
3845 4385 4.186856 ACCCAATTTTATGGCGTTGAAG 57.813 40.909 0.00 0.00 39.26 3.02
3846 4386 3.576550 ACCCAATTTTATGGCGTTGAAGT 59.423 39.130 0.00 0.00 39.26 3.01
3847 4387 4.039852 ACCCAATTTTATGGCGTTGAAGTT 59.960 37.500 0.00 0.00 39.26 2.66
3848 4388 5.244178 ACCCAATTTTATGGCGTTGAAGTTA 59.756 36.000 0.00 0.00 39.26 2.24
3849 4389 6.071051 ACCCAATTTTATGGCGTTGAAGTTAT 60.071 34.615 0.00 0.00 39.26 1.89
3850 4390 6.255453 CCCAATTTTATGGCGTTGAAGTTATG 59.745 38.462 0.00 0.00 39.26 1.90
3851 4391 6.811170 CCAATTTTATGGCGTTGAAGTTATGT 59.189 34.615 0.00 0.00 32.78 2.29
3852 4392 7.009174 CCAATTTTATGGCGTTGAAGTTATGTC 59.991 37.037 0.00 0.00 32.78 3.06
3853 4393 6.811253 TTTTATGGCGTTGAAGTTATGTCT 57.189 33.333 0.00 0.00 0.00 3.41
3854 4394 7.908827 TTTTATGGCGTTGAAGTTATGTCTA 57.091 32.000 0.00 0.00 0.00 2.59
3855 4395 7.534085 TTTATGGCGTTGAAGTTATGTCTAG 57.466 36.000 0.00 0.00 0.00 2.43
3856 4396 3.259064 TGGCGTTGAAGTTATGTCTAGC 58.741 45.455 0.00 0.00 0.00 3.42
3857 4397 3.056107 TGGCGTTGAAGTTATGTCTAGCT 60.056 43.478 0.00 0.00 0.00 3.32
3858 4398 3.552294 GGCGTTGAAGTTATGTCTAGCTC 59.448 47.826 0.00 0.00 0.00 4.09
3870 4410 0.253327 TCTAGCTCTGCTGGTCGAGA 59.747 55.000 1.96 0.00 40.10 4.04
3913 4468 2.746277 GCACGGGCGACTTTGGAT 60.746 61.111 0.00 0.00 0.00 3.41
3914 4469 3.039202 GCACGGGCGACTTTGGATG 62.039 63.158 0.00 0.00 0.00 3.51
3920 4475 1.971167 GCGACTTTGGATGCCACCA 60.971 57.895 0.00 0.00 38.24 4.17
3921 4476 1.523154 GCGACTTTGGATGCCACCAA 61.523 55.000 7.47 7.47 46.44 3.67
3925 4480 4.421365 TTGGATGCCACCAAGCTC 57.579 55.556 7.47 0.00 43.79 4.09
3926 4481 1.675310 TTGGATGCCACCAAGCTCG 60.675 57.895 7.47 0.00 43.79 5.03
3928 4483 3.512516 GATGCCACCAAGCTCGCC 61.513 66.667 0.00 0.00 0.00 5.54
3986 4541 1.080093 TCGGTGTTGACGATGGCTC 60.080 57.895 0.00 0.00 35.12 4.70
4016 4577 1.203635 TCCCTTTGTTCCCTCCCCATA 60.204 52.381 0.00 0.00 0.00 2.74
4020 4581 2.068831 TTGTTCCCTCCCCATAACCT 57.931 50.000 0.00 0.00 0.00 3.50
4096 4657 2.477176 GGCGTTGACTTGGTGTGCA 61.477 57.895 0.00 0.00 0.00 4.57
4097 4658 1.431440 GCGTTGACTTGGTGTGCAA 59.569 52.632 0.00 0.00 0.00 4.08
4101 4662 0.730265 TTGACTTGGTGTGCAACGAC 59.270 50.000 0.00 0.00 42.39 4.34
4132 4694 1.600957 GTTGGGCATGATCACATCTCG 59.399 52.381 0.00 0.00 34.15 4.04
4134 4696 1.233285 GGGCATGATCACATCTCGCC 61.233 60.000 0.00 3.59 42.71 5.54
4143 4705 2.191375 CATCTCGCCATGGTGCCT 59.809 61.111 20.97 4.39 0.00 4.75
4145 4707 2.673200 ATCTCGCCATGGTGCCTGT 61.673 57.895 20.97 3.58 0.00 4.00
4159 4721 3.710722 CTGTCTTGCCGGGCTCCT 61.711 66.667 21.46 0.00 0.00 3.69
4174 4736 1.488393 GCTCCTTCTCTAGCCATGGTT 59.512 52.381 14.67 10.52 32.40 3.67
4191 4753 2.237643 TGGTTGTGTGTGTGGAGTTAGT 59.762 45.455 0.00 0.00 0.00 2.24
4193 4755 3.064820 GGTTGTGTGTGTGGAGTTAGTTG 59.935 47.826 0.00 0.00 0.00 3.16
4200 4762 1.414919 TGTGGAGTTAGTTGGAGCGTT 59.585 47.619 0.00 0.00 0.00 4.84
4215 4777 1.154225 CGTTTGGATCCGTGCAAGC 60.154 57.895 7.39 0.00 36.99 4.01
4220 4782 3.869272 GATCCGTGCAAGCGCCAG 61.869 66.667 2.29 0.00 37.32 4.85
4240 4802 4.043168 GTCGTGACCACCCAACAG 57.957 61.111 0.00 0.00 0.00 3.16
4253 4815 2.744062 CAACAGTGGATTTGCCCCA 58.256 52.632 0.00 0.00 34.97 4.96
4260 4822 2.685106 TGGATTTGCCCCACTTTACA 57.315 45.000 0.00 0.00 34.97 2.41
4261 4823 2.964209 TGGATTTGCCCCACTTTACAA 58.036 42.857 0.00 0.00 34.97 2.41
4262 4824 2.896685 TGGATTTGCCCCACTTTACAAG 59.103 45.455 0.00 0.00 34.97 3.16
4263 4825 2.233676 GGATTTGCCCCACTTTACAAGG 59.766 50.000 0.00 0.00 0.00 3.61
4264 4826 1.710816 TTTGCCCCACTTTACAAGGG 58.289 50.000 0.00 0.00 42.94 3.95
4273 4835 3.761897 CACTTTACAAGGGGTTGGATGA 58.238 45.455 0.00 0.00 0.00 2.92
4274 4836 4.344104 CACTTTACAAGGGGTTGGATGAT 58.656 43.478 0.00 0.00 0.00 2.45
4275 4837 4.772100 CACTTTACAAGGGGTTGGATGATT 59.228 41.667 0.00 0.00 0.00 2.57
4276 4838 5.245977 CACTTTACAAGGGGTTGGATGATTT 59.754 40.000 0.00 0.00 0.00 2.17
4277 4839 5.245977 ACTTTACAAGGGGTTGGATGATTTG 59.754 40.000 0.00 0.00 0.00 2.32
4278 4840 1.901833 ACAAGGGGTTGGATGATTTGC 59.098 47.619 0.00 0.00 0.00 3.68
4279 4841 1.207811 CAAGGGGTTGGATGATTTGCC 59.792 52.381 0.00 0.00 0.00 4.52
4280 4842 0.325577 AGGGGTTGGATGATTTGCCC 60.326 55.000 0.00 0.00 35.52 5.36
4281 4843 0.325577 GGGGTTGGATGATTTGCCCT 60.326 55.000 0.00 0.00 36.46 5.19
4282 4844 1.571955 GGGTTGGATGATTTGCCCTT 58.428 50.000 0.00 0.00 33.58 3.95
4283 4845 1.908619 GGGTTGGATGATTTGCCCTTT 59.091 47.619 0.00 0.00 33.58 3.11
4284 4846 2.355007 GGGTTGGATGATTTGCCCTTTG 60.355 50.000 0.00 0.00 33.58 2.77
4285 4847 2.566724 GGTTGGATGATTTGCCCTTTGA 59.433 45.455 0.00 0.00 0.00 2.69
4286 4848 3.198417 GGTTGGATGATTTGCCCTTTGAT 59.802 43.478 0.00 0.00 0.00 2.57
4287 4849 4.323715 GGTTGGATGATTTGCCCTTTGATT 60.324 41.667 0.00 0.00 0.00 2.57
4288 4850 4.475051 TGGATGATTTGCCCTTTGATTG 57.525 40.909 0.00 0.00 0.00 2.67
4289 4851 3.839490 TGGATGATTTGCCCTTTGATTGT 59.161 39.130 0.00 0.00 0.00 2.71
4290 4852 4.081531 TGGATGATTTGCCCTTTGATTGTC 60.082 41.667 0.00 0.00 0.00 3.18
4291 4853 4.161001 GGATGATTTGCCCTTTGATTGTCT 59.839 41.667 0.00 0.00 0.00 3.41
4292 4854 4.789012 TGATTTGCCCTTTGATTGTCTC 57.211 40.909 0.00 0.00 0.00 3.36
4293 4855 4.151121 TGATTTGCCCTTTGATTGTCTCA 58.849 39.130 0.00 0.00 0.00 3.27
4294 4856 4.588106 TGATTTGCCCTTTGATTGTCTCAA 59.412 37.500 0.00 0.00 42.15 3.02
4295 4857 5.246656 TGATTTGCCCTTTGATTGTCTCAAT 59.753 36.000 0.00 0.00 43.30 2.57
4296 4858 4.524316 TTGCCCTTTGATTGTCTCAATG 57.476 40.909 0.00 0.00 43.30 2.82
4297 4859 3.765381 TGCCCTTTGATTGTCTCAATGA 58.235 40.909 0.00 0.00 43.30 2.57
4298 4860 3.507233 TGCCCTTTGATTGTCTCAATGAC 59.493 43.478 0.00 0.00 43.30 3.06
4306 4868 2.859992 GTCTCAATGACAGTGGCCC 58.140 57.895 0.00 0.00 44.73 5.80
4307 4869 0.678048 GTCTCAATGACAGTGGCCCC 60.678 60.000 0.00 0.00 44.73 5.80
4308 4870 1.746615 CTCAATGACAGTGGCCCCG 60.747 63.158 0.00 0.00 0.00 5.73
4309 4871 2.751436 CAATGACAGTGGCCCCGG 60.751 66.667 0.00 0.00 0.00 5.73
4310 4872 4.047125 AATGACAGTGGCCCCGGG 62.047 66.667 15.80 15.80 0.00 5.73
4328 4890 4.798682 CCCCACCCGGTAGCCTCT 62.799 72.222 0.00 0.00 0.00 3.69
4329 4891 3.155167 CCCACCCGGTAGCCTCTC 61.155 72.222 0.00 0.00 0.00 3.20
4330 4892 2.363795 CCACCCGGTAGCCTCTCA 60.364 66.667 0.00 0.00 0.00 3.27
4331 4893 2.427245 CCACCCGGTAGCCTCTCAG 61.427 68.421 0.00 0.00 0.00 3.35
4332 4894 2.042843 ACCCGGTAGCCTCTCAGG 60.043 66.667 0.00 0.00 38.80 3.86
4333 4895 2.840102 CCCGGTAGCCTCTCAGGG 60.840 72.222 0.00 0.00 35.37 4.45
4334 4896 2.840102 CCGGTAGCCTCTCAGGGG 60.840 72.222 0.00 0.00 35.37 4.79
4335 4897 2.840102 CGGTAGCCTCTCAGGGGG 60.840 72.222 0.00 0.00 35.37 5.40
4352 4914 0.760572 GGGGGCAAATGATCCAATGG 59.239 55.000 0.00 0.00 0.00 3.16
4353 4915 1.692121 GGGGGCAAATGATCCAATGGA 60.692 52.381 3.67 3.67 35.55 3.41
4354 4916 1.690352 GGGGCAAATGATCCAATGGAG 59.310 52.381 8.40 0.00 34.05 3.86
4355 4917 2.669781 GGGCAAATGATCCAATGGAGA 58.330 47.619 8.40 0.00 34.05 3.71
4356 4918 3.033184 GGGCAAATGATCCAATGGAGAA 58.967 45.455 8.40 0.00 34.05 2.87
4357 4919 3.069158 GGGCAAATGATCCAATGGAGAAG 59.931 47.826 8.40 0.00 34.05 2.85
4358 4920 3.703052 GGCAAATGATCCAATGGAGAAGT 59.297 43.478 8.40 0.00 34.05 3.01
4359 4921 4.889409 GGCAAATGATCCAATGGAGAAGTA 59.111 41.667 8.40 0.00 34.05 2.24
4360 4922 5.360714 GGCAAATGATCCAATGGAGAAGTAA 59.639 40.000 8.40 0.00 34.05 2.24
4361 4923 6.127366 GGCAAATGATCCAATGGAGAAGTAAA 60.127 38.462 8.40 0.00 34.05 2.01
4362 4924 6.976925 GCAAATGATCCAATGGAGAAGTAAAG 59.023 38.462 8.40 0.00 34.05 1.85
4363 4925 7.363268 GCAAATGATCCAATGGAGAAGTAAAGT 60.363 37.037 8.40 0.00 34.05 2.66
4364 4926 7.636150 AATGATCCAATGGAGAAGTAAAGTG 57.364 36.000 8.40 0.00 34.05 3.16
4365 4927 5.500234 TGATCCAATGGAGAAGTAAAGTGG 58.500 41.667 8.40 0.00 34.05 4.00
4366 4928 4.301072 TCCAATGGAGAAGTAAAGTGGG 57.699 45.455 0.00 0.00 0.00 4.61
4367 4929 3.010138 TCCAATGGAGAAGTAAAGTGGGG 59.990 47.826 0.00 0.00 0.00 4.96
4368 4930 2.755103 CAATGGAGAAGTAAAGTGGGGC 59.245 50.000 0.00 0.00 0.00 5.80
4369 4931 1.440618 TGGAGAAGTAAAGTGGGGCA 58.559 50.000 0.00 0.00 0.00 5.36
4370 4932 1.777878 TGGAGAAGTAAAGTGGGGCAA 59.222 47.619 0.00 0.00 0.00 4.52
4371 4933 2.175931 TGGAGAAGTAAAGTGGGGCAAA 59.824 45.455 0.00 0.00 0.00 3.68
4372 4934 3.227614 GGAGAAGTAAAGTGGGGCAAAA 58.772 45.455 0.00 0.00 0.00 2.44
4373 4935 3.255888 GGAGAAGTAAAGTGGGGCAAAAG 59.744 47.826 0.00 0.00 0.00 2.27
4374 4936 4.142038 GAGAAGTAAAGTGGGGCAAAAGA 58.858 43.478 0.00 0.00 0.00 2.52
4375 4937 4.740902 AGAAGTAAAGTGGGGCAAAAGAT 58.259 39.130 0.00 0.00 0.00 2.40
4376 4938 4.767409 AGAAGTAAAGTGGGGCAAAAGATC 59.233 41.667 0.00 0.00 0.00 2.75
4377 4939 3.431415 AGTAAAGTGGGGCAAAAGATCC 58.569 45.455 0.00 0.00 0.00 3.36
4378 4940 2.397044 AAAGTGGGGCAAAAGATCCA 57.603 45.000 0.00 0.00 0.00 3.41
4379 4941 2.397044 AAGTGGGGCAAAAGATCCAA 57.603 45.000 0.00 0.00 0.00 3.53
4380 4942 2.629017 AGTGGGGCAAAAGATCCAAT 57.371 45.000 0.00 0.00 0.00 3.16
4381 4943 2.906568 AGTGGGGCAAAAGATCCAATT 58.093 42.857 0.00 0.00 0.00 2.32
4382 4944 3.250617 AGTGGGGCAAAAGATCCAATTT 58.749 40.909 0.00 0.00 0.00 1.82
4383 4945 3.261643 AGTGGGGCAAAAGATCCAATTTC 59.738 43.478 0.00 0.00 0.00 2.17
4384 4946 3.261643 GTGGGGCAAAAGATCCAATTTCT 59.738 43.478 0.00 0.00 0.00 2.52
4385 4947 3.515104 TGGGGCAAAAGATCCAATTTCTC 59.485 43.478 0.00 0.00 0.00 2.87
4386 4948 3.429410 GGGGCAAAAGATCCAATTTCTCG 60.429 47.826 0.00 0.00 0.00 4.04
4387 4949 3.429410 GGGCAAAAGATCCAATTTCTCGG 60.429 47.826 0.00 0.00 0.00 4.63
4388 4950 3.193479 GGCAAAAGATCCAATTTCTCGGT 59.807 43.478 0.00 0.00 0.00 4.69
4389 4951 4.415735 GCAAAAGATCCAATTTCTCGGTC 58.584 43.478 0.00 0.00 0.00 4.79
4390 4952 4.651994 CAAAAGATCCAATTTCTCGGTCG 58.348 43.478 0.00 0.00 0.00 4.79
4391 4953 2.604046 AGATCCAATTTCTCGGTCGG 57.396 50.000 0.00 0.00 0.00 4.79
4392 4954 1.831736 AGATCCAATTTCTCGGTCGGT 59.168 47.619 0.00 0.00 0.00 4.69
4393 4955 1.933853 GATCCAATTTCTCGGTCGGTG 59.066 52.381 0.00 0.00 0.00 4.94
4394 4956 0.970640 TCCAATTTCTCGGTCGGTGA 59.029 50.000 0.00 0.00 0.00 4.02
4395 4957 1.345089 TCCAATTTCTCGGTCGGTGAA 59.655 47.619 0.00 0.00 0.00 3.18
4396 4958 1.732259 CCAATTTCTCGGTCGGTGAAG 59.268 52.381 0.00 0.00 0.00 3.02
4397 4959 1.732259 CAATTTCTCGGTCGGTGAAGG 59.268 52.381 0.00 0.00 0.00 3.46
4398 4960 0.391263 ATTTCTCGGTCGGTGAAGGC 60.391 55.000 0.00 0.00 0.00 4.35
4399 4961 2.444700 TTTCTCGGTCGGTGAAGGCC 62.445 60.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.881118 GCCTGGCGATCACTGAAAAA 59.119 50.000 1.35 0.00 0.00 1.94
10 11 0.960364 GGCCTGGCGATCACTGAAAA 60.960 55.000 13.40 0.00 0.00 2.29
11 12 1.377202 GGCCTGGCGATCACTGAAA 60.377 57.895 13.40 0.00 0.00 2.69
12 13 2.123248 TTGGCCTGGCGATCACTGAA 62.123 55.000 13.40 0.00 0.00 3.02
13 14 2.526450 CTTGGCCTGGCGATCACTGA 62.526 60.000 13.40 0.00 0.00 3.41
14 15 2.046023 TTGGCCTGGCGATCACTG 60.046 61.111 13.40 0.00 0.00 3.66
15 16 2.270205 CTTGGCCTGGCGATCACT 59.730 61.111 13.40 0.00 0.00 3.41
16 17 2.109126 GTCTTGGCCTGGCGATCAC 61.109 63.158 13.40 4.73 0.00 3.06
17 18 2.268920 GTCTTGGCCTGGCGATCA 59.731 61.111 13.40 1.86 0.00 2.92
18 19 2.650813 ATCGTCTTGGCCTGGCGATC 62.651 60.000 25.23 0.00 37.71 3.69
19 20 2.650813 GATCGTCTTGGCCTGGCGAT 62.651 60.000 28.92 28.92 43.65 4.58
20 21 3.371097 GATCGTCTTGGCCTGGCGA 62.371 63.158 23.40 23.40 36.02 5.54
21 22 2.892425 GATCGTCTTGGCCTGGCG 60.892 66.667 13.40 15.29 0.00 5.69
22 23 1.377202 TTGATCGTCTTGGCCTGGC 60.377 57.895 11.05 11.05 0.00 4.85
23 24 1.361668 CGTTGATCGTCTTGGCCTGG 61.362 60.000 3.32 0.00 34.52 4.45
24 25 2.081526 CGTTGATCGTCTTGGCCTG 58.918 57.895 3.32 0.00 34.52 4.85
64 65 1.968050 ATAGCTGTCGAAACCCCCGG 61.968 60.000 0.00 0.00 0.00 5.73
65 66 0.810031 CATAGCTGTCGAAACCCCCG 60.810 60.000 0.00 0.00 0.00 5.73
66 67 1.095807 GCATAGCTGTCGAAACCCCC 61.096 60.000 0.00 0.00 0.00 5.40
67 68 1.095807 GGCATAGCTGTCGAAACCCC 61.096 60.000 0.00 0.00 0.00 4.95
68 69 0.392461 TGGCATAGCTGTCGAAACCC 60.392 55.000 0.00 0.00 0.00 4.11
69 70 1.130561 GTTGGCATAGCTGTCGAAACC 59.869 52.381 0.00 0.00 0.00 3.27
70 71 1.804151 TGTTGGCATAGCTGTCGAAAC 59.196 47.619 0.00 0.00 0.00 2.78
71 72 2.177394 TGTTGGCATAGCTGTCGAAA 57.823 45.000 0.00 0.00 0.00 3.46
72 73 2.076100 CTTGTTGGCATAGCTGTCGAA 58.924 47.619 0.00 0.00 0.00 3.71
73 74 1.001974 ACTTGTTGGCATAGCTGTCGA 59.998 47.619 0.00 0.00 0.00 4.20
74 75 1.129251 CACTTGTTGGCATAGCTGTCG 59.871 52.381 0.00 0.00 0.00 4.35
75 76 2.154462 ACACTTGTTGGCATAGCTGTC 58.846 47.619 0.00 0.00 0.00 3.51
76 77 2.276732 ACACTTGTTGGCATAGCTGT 57.723 45.000 0.00 0.00 0.00 4.40
77 78 3.125829 CAGTACACTTGTTGGCATAGCTG 59.874 47.826 0.00 0.00 0.00 4.24
78 79 3.338249 CAGTACACTTGTTGGCATAGCT 58.662 45.455 0.00 0.00 0.00 3.32
79 80 2.159517 GCAGTACACTTGTTGGCATAGC 60.160 50.000 0.00 0.00 0.00 2.97
80 81 3.338249 AGCAGTACACTTGTTGGCATAG 58.662 45.455 0.00 0.00 0.00 2.23
81 82 3.417069 AGCAGTACACTTGTTGGCATA 57.583 42.857 0.00 0.00 0.00 3.14
82 83 2.276732 AGCAGTACACTTGTTGGCAT 57.723 45.000 0.00 0.00 0.00 4.40
83 84 2.920724 TAGCAGTACACTTGTTGGCA 57.079 45.000 0.00 0.00 0.00 4.92
84 85 2.348666 CGATAGCAGTACACTTGTTGGC 59.651 50.000 0.00 0.00 0.00 4.52
85 86 3.585862 ACGATAGCAGTACACTTGTTGG 58.414 45.455 0.00 0.00 42.67 3.77
86 87 4.798907 CCTACGATAGCAGTACACTTGTTG 59.201 45.833 0.00 0.00 42.67 3.33
87 88 4.142227 CCCTACGATAGCAGTACACTTGTT 60.142 45.833 0.00 0.00 42.67 2.83
88 89 3.380637 CCCTACGATAGCAGTACACTTGT 59.619 47.826 0.00 0.00 42.67 3.16
89 90 3.380637 ACCCTACGATAGCAGTACACTTG 59.619 47.826 0.00 0.00 42.67 3.16
90 91 3.629087 ACCCTACGATAGCAGTACACTT 58.371 45.455 0.00 0.00 42.67 3.16
91 92 3.294038 ACCCTACGATAGCAGTACACT 57.706 47.619 0.00 0.00 42.67 3.55
92 93 3.501445 CCTACCCTACGATAGCAGTACAC 59.499 52.174 0.00 0.00 42.67 2.90
111 112 1.396653 GTAGTAGCCGCTGGTTCCTA 58.603 55.000 2.16 0.00 0.00 2.94
126 127 0.392729 CTGTCCCGTCTCTCCGTAGT 60.393 60.000 0.00 0.00 0.00 2.73
128 129 0.545171 ATCTGTCCCGTCTCTCCGTA 59.455 55.000 0.00 0.00 0.00 4.02
148 149 1.471684 CTCATTGTGAAGCTTGGCCTC 59.528 52.381 2.10 0.00 0.00 4.70
204 205 6.911250 TTCATCTTCGTTAGCCCATATAGA 57.089 37.500 0.00 0.00 0.00 1.98
215 216 9.887406 GTTTGGTCTAATTTTTCATCTTCGTTA 57.113 29.630 0.00 0.00 0.00 3.18
218 219 7.593825 AGGTTTGGTCTAATTTTTCATCTTCG 58.406 34.615 0.00 0.00 0.00 3.79
246 247 2.626455 GATCCGTTTCGCATCGCC 59.374 61.111 0.00 0.00 0.00 5.54
248 249 1.808234 GACCGATCCGTTTCGCATCG 61.808 60.000 8.23 8.23 39.31 3.84
273 274 4.973055 TGGTGTGTACGCGGTGCC 62.973 66.667 12.47 4.22 0.00 5.01
274 275 2.322081 AATGGTGTGTACGCGGTGC 61.322 57.895 12.47 0.00 0.00 5.01
275 276 1.495509 CAATGGTGTGTACGCGGTG 59.504 57.895 12.47 0.00 0.00 4.94
276 277 1.669760 CCAATGGTGTGTACGCGGT 60.670 57.895 12.47 0.00 0.00 5.68
277 278 0.390078 TACCAATGGTGTGTACGCGG 60.390 55.000 16.41 0.00 36.19 6.46
278 279 0.996462 CTACCAATGGTGTGTACGCG 59.004 55.000 16.41 3.53 36.19 6.01
279 280 1.997606 GACTACCAATGGTGTGTACGC 59.002 52.381 16.41 0.00 36.19 4.42
280 281 3.587797 AGACTACCAATGGTGTGTACG 57.412 47.619 16.41 0.00 36.19 3.67
281 282 5.148651 AGAAGACTACCAATGGTGTGTAC 57.851 43.478 16.41 8.77 36.19 2.90
283 284 3.646162 TGAGAAGACTACCAATGGTGTGT 59.354 43.478 16.41 13.57 36.19 3.72
284 285 3.997021 GTGAGAAGACTACCAATGGTGTG 59.003 47.826 16.41 10.28 36.19 3.82
285 286 3.306088 CGTGAGAAGACTACCAATGGTGT 60.306 47.826 16.41 11.05 36.19 4.16
286 287 3.254060 CGTGAGAAGACTACCAATGGTG 58.746 50.000 16.41 7.71 36.19 4.17
287 288 2.353803 GCGTGAGAAGACTACCAATGGT 60.354 50.000 10.81 10.81 40.16 3.55
288 289 2.093973 AGCGTGAGAAGACTACCAATGG 60.094 50.000 0.00 0.00 0.00 3.16
289 290 3.182967 GAGCGTGAGAAGACTACCAATG 58.817 50.000 0.00 0.00 0.00 2.82
290 291 2.826128 TGAGCGTGAGAAGACTACCAAT 59.174 45.455 0.00 0.00 0.00 3.16
291 292 2.030185 GTGAGCGTGAGAAGACTACCAA 60.030 50.000 0.00 0.00 0.00 3.67
292 293 1.540267 GTGAGCGTGAGAAGACTACCA 59.460 52.381 0.00 0.00 0.00 3.25
293 294 1.466024 CGTGAGCGTGAGAAGACTACC 60.466 57.143 0.00 0.00 0.00 3.18
294 295 1.884756 CGTGAGCGTGAGAAGACTAC 58.115 55.000 0.00 0.00 0.00 2.73
312 313 1.971336 CGAACTACGAACGTGAGCG 59.029 57.895 10.14 0.00 45.77 5.03
313 314 1.671880 GGCGAACTACGAACGTGAGC 61.672 60.000 10.14 7.67 45.77 4.26
314 315 0.386352 TGGCGAACTACGAACGTGAG 60.386 55.000 10.14 6.28 45.77 3.51
315 316 0.030504 TTGGCGAACTACGAACGTGA 59.969 50.000 10.14 0.00 45.77 4.35
316 317 0.854062 TTTGGCGAACTACGAACGTG 59.146 50.000 10.14 3.19 45.77 4.49
317 318 1.134226 CTTTGGCGAACTACGAACGT 58.866 50.000 5.03 5.03 45.77 3.99
323 324 0.706729 CGTCGTCTTTGGCGAACTAC 59.293 55.000 0.00 0.00 40.19 2.73
343 344 2.434185 CTACCGGTGCATGTGCGT 60.434 61.111 19.93 0.00 45.83 5.24
345 346 0.673644 AAGACTACCGGTGCATGTGC 60.674 55.000 19.93 0.00 42.50 4.57
347 348 1.204941 GAGAAGACTACCGGTGCATGT 59.795 52.381 19.93 10.73 0.00 3.21
358 359 2.351835 GCACGTGAGCTTGAGAAGACTA 60.352 50.000 22.23 0.00 0.00 2.59
367 368 2.093310 CAGATTAGTGCACGTGAGCTTG 59.907 50.000 22.23 7.21 34.99 4.01
369 370 2.001812 CAGATTAGTGCACGTGAGCT 57.998 50.000 22.23 17.76 34.99 4.09
410 418 7.228706 TCGTTTCAGCTTCTATTTCCTTTCTTT 59.771 33.333 0.00 0.00 0.00 2.52
411 419 6.710744 TCGTTTCAGCTTCTATTTCCTTTCTT 59.289 34.615 0.00 0.00 0.00 2.52
412 420 6.231211 TCGTTTCAGCTTCTATTTCCTTTCT 58.769 36.000 0.00 0.00 0.00 2.52
413 421 6.481954 TCGTTTCAGCTTCTATTTCCTTTC 57.518 37.500 0.00 0.00 0.00 2.62
414 422 6.877611 TTCGTTTCAGCTTCTATTTCCTTT 57.122 33.333 0.00 0.00 0.00 3.11
415 423 6.877611 TTTCGTTTCAGCTTCTATTTCCTT 57.122 33.333 0.00 0.00 0.00 3.36
416 424 7.308435 CAATTTCGTTTCAGCTTCTATTTCCT 58.692 34.615 0.00 0.00 0.00 3.36
427 435 1.269448 TCCCAGCAATTTCGTTTCAGC 59.731 47.619 0.00 0.00 0.00 4.26
428 436 2.095059 CCTCCCAGCAATTTCGTTTCAG 60.095 50.000 0.00 0.00 0.00 3.02
656 720 1.418373 GCTGTTTTGGTCATTTCGCC 58.582 50.000 0.00 0.00 0.00 5.54
689 753 2.904866 TGCTTTGCGGCGAAAGGT 60.905 55.556 23.31 0.00 34.11 3.50
776 841 2.202171 CATTTGGACGCGCGTGAC 60.202 61.111 42.90 31.24 0.00 3.67
934 999 0.036306 GCGAGGGGGAAGTGAAGAAA 59.964 55.000 0.00 0.00 0.00 2.52
942 1007 2.736826 GGAGAAGGCGAGGGGGAAG 61.737 68.421 0.00 0.00 0.00 3.46
945 1010 3.474570 CAGGAGAAGGCGAGGGGG 61.475 72.222 0.00 0.00 0.00 5.40
961 1026 2.040464 GATCAGGAGGGGAGGGCA 60.040 66.667 0.00 0.00 0.00 5.36
962 1027 3.237741 CGATCAGGAGGGGAGGGC 61.238 72.222 0.00 0.00 0.00 5.19
963 1028 2.525381 CCGATCAGGAGGGGAGGG 60.525 72.222 0.00 0.00 45.00 4.30
964 1029 2.609339 TCCGATCAGGAGGGGAGG 59.391 66.667 2.65 0.00 45.98 4.30
1020 1085 2.986979 TGGTACTCGGCGCTGACA 60.987 61.111 16.69 9.17 0.00 3.58
1151 1219 3.788333 AAAACTCCGTCGATAATCCGA 57.212 42.857 0.00 0.00 36.06 4.55
1182 1251 3.094572 ACAGATCAGGCCATGAAAAAGG 58.905 45.455 5.01 0.00 42.53 3.11
1183 1252 4.021719 ACAACAGATCAGGCCATGAAAAAG 60.022 41.667 5.01 1.34 42.53 2.27
1184 1253 3.896888 ACAACAGATCAGGCCATGAAAAA 59.103 39.130 5.01 0.00 42.53 1.94
1185 1254 3.499338 ACAACAGATCAGGCCATGAAAA 58.501 40.909 5.01 0.00 42.53 2.29
1186 1255 3.084039 GACAACAGATCAGGCCATGAAA 58.916 45.455 5.01 0.00 42.53 2.69
1226 1305 4.052229 ACGTCGAAGGTCCCAGCG 62.052 66.667 0.00 0.00 0.00 5.18
1379 1458 2.014857 CGTCGAACCTGGTAGAGATCA 58.985 52.381 0.00 0.00 0.00 2.92
1439 1519 7.362660 ATGAATCATCAGAAACCACATTCAGTG 60.363 37.037 0.00 0.00 42.71 3.66
1444 1524 8.130671 AGAAATGAATCATCAGAAACCACATT 57.869 30.769 0.00 0.00 39.39 2.71
1478 1558 2.671177 CGACAACTCCCGCAAGCTG 61.671 63.158 0.00 0.00 0.00 4.24
1498 1578 4.016706 CCACCGGACACCTCCACC 62.017 72.222 9.46 0.00 36.12 4.61
1551 1631 8.915036 TGCAAAGTTAACCAAGGTTAAGAAATA 58.085 29.630 21.39 7.31 46.90 1.40
1578 1658 4.447180 CCTGGACTAAAACCCTGAGGAAAA 60.447 45.833 0.00 0.00 36.73 2.29
1596 1676 2.038545 TACCCACACTGTCCCCTGGA 62.039 60.000 0.00 0.00 0.00 3.86
1597 1677 1.537889 TACCCACACTGTCCCCTGG 60.538 63.158 0.00 0.00 0.00 4.45
1640 1994 7.458409 AAATCACATGCTGACAAGAATACTT 57.542 32.000 0.00 0.00 36.73 2.24
1654 2008 2.288152 ACCCAAACACGAAATCACATGC 60.288 45.455 0.00 0.00 0.00 4.06
1791 2175 3.244981 ACCAAAACCACTAATTAGGCCGA 60.245 43.478 16.73 0.00 0.00 5.54
1801 2185 1.228306 CCGCCCACCAAAACCACTA 60.228 57.895 0.00 0.00 0.00 2.74
1884 2268 9.918630 ACAGTAACTAATTAATTGTCGTACACT 57.081 29.630 11.05 8.80 0.00 3.55
1930 2314 5.824904 ATGAGAACTGAATGCCACAATAC 57.175 39.130 0.00 0.00 0.00 1.89
2120 2508 3.959535 TTGCTTGGCCCTTTCTATTTG 57.040 42.857 0.00 0.00 0.00 2.32
2274 2692 6.774354 AAAATGTGCTCAGCTAAACAATTG 57.226 33.333 3.24 3.24 0.00 2.32
2462 2880 9.675464 ATCAAAGCATGATTTCCATTTACAATT 57.325 25.926 5.84 0.00 46.85 2.32
2479 2897 7.839907 TGGAAATAAGTAAGCAATCAAAGCAT 58.160 30.769 0.00 0.00 0.00 3.79
2523 2941 6.628185 CGTAGTTTAAGGAAGAAGCCTTCTA 58.372 40.000 7.53 0.00 44.89 2.10
2824 3357 9.692749 ATAATATGAAAGCAGATTGAGCAAATG 57.307 29.630 0.00 0.00 36.66 2.32
3003 3538 2.169978 GCGGGGAAATCAAGGTACTAGT 59.830 50.000 0.00 0.00 38.49 2.57
3079 3614 1.203187 ACCACTCAGAAGCTCCCTGTA 60.203 52.381 13.65 3.34 33.57 2.74
3203 3738 2.223971 ACTACAACCAGTGAAGTGGACG 60.224 50.000 11.20 4.01 40.44 4.79
3239 3774 6.207417 CGGGAAAATAATAATCAGCATCCTGT 59.793 38.462 0.00 0.00 40.09 4.00
3264 3801 5.010213 AGCCTTCTCGTCCTATCAGAATTAC 59.990 44.000 0.00 0.00 0.00 1.89
3273 3810 4.223032 TCAAAGAAAGCCTTCTCGTCCTAT 59.777 41.667 0.00 0.00 41.23 2.57
3279 3816 2.739379 GTCCTCAAAGAAAGCCTTCTCG 59.261 50.000 0.00 0.00 41.23 4.04
3383 3920 1.739466 ACCGATAAGACAGTCGCGTTA 59.261 47.619 5.77 0.00 36.57 3.18
3434 3971 1.550524 AGACACGCCTCTTATGCTTCA 59.449 47.619 0.00 0.00 0.00 3.02
3440 3977 3.315749 GCAGTAGTAGACACGCCTCTTAT 59.684 47.826 0.00 0.00 0.00 1.73
3448 3987 2.678836 AGTAGCAGCAGTAGTAGACACG 59.321 50.000 0.00 0.00 0.00 4.49
3449 3988 5.297278 ACATAGTAGCAGCAGTAGTAGACAC 59.703 44.000 0.00 0.00 0.00 3.67
3482 4021 3.759086 TCTAGACGCAGAACAAGATCACT 59.241 43.478 0.00 0.00 0.00 3.41
3543 4082 4.435425 CCAACGGACATTATTACGGAGAA 58.565 43.478 0.00 0.00 0.00 2.87
3548 4087 3.619483 TCAAGCCAACGGACATTATTACG 59.381 43.478 0.00 0.00 0.00 3.18
3618 4157 9.814732 TACGATAGATCTGTGGCATAAGGCAAC 62.815 44.444 5.18 0.00 46.70 4.17
3620 4159 3.306294 CGATAGATCTGTGGCATAAGGCA 60.306 47.826 5.18 0.00 44.43 4.75
3665 4205 1.378531 TCATGCGCAAGGTACCATTC 58.621 50.000 17.11 0.00 38.28 2.67
3666 4206 1.949525 GATCATGCGCAAGGTACCATT 59.050 47.619 17.11 2.59 38.28 3.16
3734 4274 4.339872 TCCTGTAACGAAACCTAAGCAA 57.660 40.909 0.00 0.00 0.00 3.91
3773 4313 3.565482 ACAATAGCTATCCCAACAATGCG 59.435 43.478 6.72 0.00 0.00 4.73
3778 4318 5.336372 GCAAACAACAATAGCTATCCCAACA 60.336 40.000 6.72 0.00 0.00 3.33
3808 4348 1.955778 TGGGTTGCTGACAATGTGAAG 59.044 47.619 0.00 0.00 38.27 3.02
3819 4359 2.270047 CGCCATAAAATTGGGTTGCTG 58.730 47.619 0.00 0.00 37.24 4.41
3822 4362 3.919216 TCAACGCCATAAAATTGGGTTG 58.081 40.909 13.32 13.32 42.77 3.77
3823 4363 4.039852 ACTTCAACGCCATAAAATTGGGTT 59.960 37.500 0.00 0.00 37.24 4.11
3824 4364 3.576550 ACTTCAACGCCATAAAATTGGGT 59.423 39.130 0.00 0.00 37.24 4.51
3825 4365 4.186856 ACTTCAACGCCATAAAATTGGG 57.813 40.909 0.00 0.00 37.24 4.12
3826 4366 6.811170 ACATAACTTCAACGCCATAAAATTGG 59.189 34.615 0.00 0.00 39.94 3.16
3827 4367 7.754924 AGACATAACTTCAACGCCATAAAATTG 59.245 33.333 0.00 0.00 0.00 2.32
3828 4368 7.826690 AGACATAACTTCAACGCCATAAAATT 58.173 30.769 0.00 0.00 0.00 1.82
3829 4369 7.391148 AGACATAACTTCAACGCCATAAAAT 57.609 32.000 0.00 0.00 0.00 1.82
3830 4370 6.811253 AGACATAACTTCAACGCCATAAAA 57.189 33.333 0.00 0.00 0.00 1.52
3831 4371 6.036735 GCTAGACATAACTTCAACGCCATAAA 59.963 38.462 0.00 0.00 0.00 1.40
3832 4372 5.522460 GCTAGACATAACTTCAACGCCATAA 59.478 40.000 0.00 0.00 0.00 1.90
3833 4373 5.047847 GCTAGACATAACTTCAACGCCATA 58.952 41.667 0.00 0.00 0.00 2.74
3834 4374 3.871594 GCTAGACATAACTTCAACGCCAT 59.128 43.478 0.00 0.00 0.00 4.40
3835 4375 3.056107 AGCTAGACATAACTTCAACGCCA 60.056 43.478 0.00 0.00 0.00 5.69
3836 4376 3.522553 AGCTAGACATAACTTCAACGCC 58.477 45.455 0.00 0.00 0.00 5.68
3837 4377 4.266502 CAGAGCTAGACATAACTTCAACGC 59.733 45.833 0.00 0.00 0.00 4.84
3838 4378 4.266502 GCAGAGCTAGACATAACTTCAACG 59.733 45.833 0.00 0.00 0.00 4.10
3839 4379 5.290643 CAGCAGAGCTAGACATAACTTCAAC 59.709 44.000 0.00 0.00 36.40 3.18
3840 4380 5.414360 CAGCAGAGCTAGACATAACTTCAA 58.586 41.667 0.00 0.00 36.40 2.69
3841 4381 4.142071 CCAGCAGAGCTAGACATAACTTCA 60.142 45.833 0.00 0.00 36.40 3.02
3842 4382 4.142049 ACCAGCAGAGCTAGACATAACTTC 60.142 45.833 0.00 0.00 36.40 3.01
3843 4383 3.772025 ACCAGCAGAGCTAGACATAACTT 59.228 43.478 0.00 0.00 36.40 2.66
3844 4384 3.370104 ACCAGCAGAGCTAGACATAACT 58.630 45.455 0.00 0.00 36.40 2.24
3845 4385 3.712187 GACCAGCAGAGCTAGACATAAC 58.288 50.000 0.00 0.00 36.40 1.89
3846 4386 2.359214 CGACCAGCAGAGCTAGACATAA 59.641 50.000 0.00 0.00 36.40 1.90
3847 4387 1.950216 CGACCAGCAGAGCTAGACATA 59.050 52.381 0.00 0.00 36.40 2.29
3848 4388 0.743688 CGACCAGCAGAGCTAGACAT 59.256 55.000 0.00 0.00 36.40 3.06
3849 4389 0.322546 TCGACCAGCAGAGCTAGACA 60.323 55.000 0.00 0.00 36.40 3.41
3850 4390 0.380378 CTCGACCAGCAGAGCTAGAC 59.620 60.000 0.00 0.00 36.40 2.59
3851 4391 0.253327 TCTCGACCAGCAGAGCTAGA 59.747 55.000 0.00 0.00 36.40 2.43
3852 4392 0.380378 GTCTCGACCAGCAGAGCTAG 59.620 60.000 0.00 0.00 36.40 3.42
3853 4393 2.483441 GTCTCGACCAGCAGAGCTA 58.517 57.895 0.00 0.00 36.40 3.32
3854 4394 3.283303 GTCTCGACCAGCAGAGCT 58.717 61.111 0.00 0.00 40.77 4.09
3901 4456 2.700773 GGTGGCATCCAAAGTCGCC 61.701 63.158 0.00 0.00 45.11 5.54
3908 4463 1.675310 CGAGCTTGGTGGCATCCAA 60.675 57.895 16.90 16.90 44.03 3.53
3952 4507 2.517450 CGATTGCTTCTCCGGCGAC 61.517 63.158 9.30 0.00 0.00 5.19
3953 4508 2.202743 CGATTGCTTCTCCGGCGA 60.203 61.111 9.30 0.00 0.00 5.54
3966 4521 0.036388 AGCCATCGTCAACACCGATT 60.036 50.000 0.00 0.00 42.75 3.34
3983 4538 0.553333 AAAGGGATAGCAAGGGGAGC 59.447 55.000 0.00 0.00 0.00 4.70
3986 4541 2.379005 GAACAAAGGGATAGCAAGGGG 58.621 52.381 0.00 0.00 0.00 4.79
4020 4581 2.232941 GACGAGGTGGAAGACAACCATA 59.767 50.000 0.00 0.00 37.57 2.74
4025 4586 1.254026 ATCGACGAGGTGGAAGACAA 58.746 50.000 3.01 0.00 0.00 3.18
4028 4589 1.671850 GCAAATCGACGAGGTGGAAGA 60.672 52.381 3.01 0.00 0.00 2.87
4031 4592 0.389817 CTGCAAATCGACGAGGTGGA 60.390 55.000 3.01 4.21 0.00 4.02
4032 4593 1.970917 GCTGCAAATCGACGAGGTGG 61.971 60.000 3.01 0.00 0.00 4.61
4063 4624 4.101448 GCCACACCAGAGGCGGAT 62.101 66.667 0.00 0.00 41.64 4.18
4074 4635 1.355210 CACCAAGTCAACGCCACAC 59.645 57.895 0.00 0.00 0.00 3.82
4124 4686 2.475466 GGCACCATGGCGAGATGTG 61.475 63.158 13.04 1.20 31.79 3.21
4132 4694 2.998279 GCAAGACAGGCACCATGGC 61.998 63.158 13.04 0.00 44.10 4.40
4134 4696 2.693762 CGGCAAGACAGGCACCATG 61.694 63.158 0.00 0.00 0.00 3.66
4143 4705 3.249189 AAGGAGCCCGGCAAGACA 61.249 61.111 13.15 0.00 0.00 3.41
4145 4707 2.607750 AGAAGGAGCCCGGCAAGA 60.608 61.111 13.15 0.00 0.00 3.02
4159 4721 2.371841 ACACACAACCATGGCTAGAGAA 59.628 45.455 13.04 0.00 0.00 2.87
4174 4736 2.502130 TCCAACTAACTCCACACACACA 59.498 45.455 0.00 0.00 0.00 3.72
4191 4753 0.953471 CACGGATCCAAACGCTCCAA 60.953 55.000 13.41 0.00 0.00 3.53
4193 4755 2.750888 GCACGGATCCAAACGCTCC 61.751 63.158 13.41 0.00 0.00 4.70
4200 4762 3.430862 GCGCTTGCACGGATCCAA 61.431 61.111 13.41 0.00 38.92 3.53
4244 4806 2.256306 CCCTTGTAAAGTGGGGCAAAT 58.744 47.619 0.00 0.00 44.25 2.32
4245 4807 1.710816 CCCTTGTAAAGTGGGGCAAA 58.289 50.000 0.00 0.00 44.25 3.68
4250 4812 1.146152 TCCAACCCCTTGTAAAGTGGG 59.854 52.381 10.35 10.35 46.66 4.61
4252 4814 3.761897 TCATCCAACCCCTTGTAAAGTG 58.238 45.455 0.00 0.00 44.25 3.16
4253 4815 4.675063 ATCATCCAACCCCTTGTAAAGT 57.325 40.909 0.00 0.00 44.25 2.66
4255 4817 4.020662 GCAAATCATCCAACCCCTTGTAAA 60.021 41.667 0.00 0.00 0.00 2.01
4256 4818 3.513515 GCAAATCATCCAACCCCTTGTAA 59.486 43.478 0.00 0.00 0.00 2.41
4257 4819 3.096092 GCAAATCATCCAACCCCTTGTA 58.904 45.455 0.00 0.00 0.00 2.41
4259 4821 1.207811 GGCAAATCATCCAACCCCTTG 59.792 52.381 0.00 0.00 0.00 3.61
4260 4822 1.571955 GGCAAATCATCCAACCCCTT 58.428 50.000 0.00 0.00 0.00 3.95
4261 4823 0.325577 GGGCAAATCATCCAACCCCT 60.326 55.000 0.00 0.00 0.00 4.79
4262 4824 0.325577 AGGGCAAATCATCCAACCCC 60.326 55.000 0.00 0.00 38.14 4.95
4263 4825 1.571955 AAGGGCAAATCATCCAACCC 58.428 50.000 0.00 0.00 37.63 4.11
4264 4826 2.566724 TCAAAGGGCAAATCATCCAACC 59.433 45.455 0.00 0.00 0.00 3.77
4265 4827 3.959535 TCAAAGGGCAAATCATCCAAC 57.040 42.857 0.00 0.00 0.00 3.77
4266 4828 4.286549 ACAATCAAAGGGCAAATCATCCAA 59.713 37.500 0.00 0.00 0.00 3.53
4267 4829 3.839490 ACAATCAAAGGGCAAATCATCCA 59.161 39.130 0.00 0.00 0.00 3.41
4268 4830 4.161001 AGACAATCAAAGGGCAAATCATCC 59.839 41.667 0.00 0.00 0.00 3.51
4269 4831 5.105635 TGAGACAATCAAAGGGCAAATCATC 60.106 40.000 0.00 0.00 34.02 2.92
4270 4832 4.773674 TGAGACAATCAAAGGGCAAATCAT 59.226 37.500 0.00 0.00 34.02 2.45
4271 4833 4.151121 TGAGACAATCAAAGGGCAAATCA 58.849 39.130 0.00 0.00 34.02 2.57
4272 4834 4.789012 TGAGACAATCAAAGGGCAAATC 57.211 40.909 0.00 0.00 34.02 2.17
4289 4851 1.685224 GGGGCCACTGTCATTGAGA 59.315 57.895 4.39 0.00 0.00 3.27
4290 4852 1.746615 CGGGGCCACTGTCATTGAG 60.747 63.158 1.96 0.00 0.00 3.02
4291 4853 2.350895 CGGGGCCACTGTCATTGA 59.649 61.111 1.96 0.00 0.00 2.57
4292 4854 2.751436 CCGGGGCCACTGTCATTG 60.751 66.667 1.96 0.00 0.00 2.82
4293 4855 4.047125 CCCGGGGCCACTGTCATT 62.047 66.667 14.71 0.00 0.00 2.57
4311 4873 4.798682 AGAGGCTACCGGGTGGGG 62.799 72.222 10.66 1.06 41.60 4.96
4312 4874 3.155167 GAGAGGCTACCGGGTGGG 61.155 72.222 10.66 3.73 40.75 4.61
4313 4875 2.363795 TGAGAGGCTACCGGGTGG 60.364 66.667 10.66 8.30 42.84 4.61
4314 4876 2.427245 CCTGAGAGGCTACCGGGTG 61.427 68.421 10.66 0.00 0.00 4.61
4315 4877 2.042843 CCTGAGAGGCTACCGGGT 60.043 66.667 6.32 4.46 0.00 5.28
4316 4878 2.840102 CCCTGAGAGGCTACCGGG 60.840 72.222 6.32 6.52 32.73 5.73
4317 4879 2.840102 CCCCTGAGAGGCTACCGG 60.840 72.222 0.00 0.00 32.73 5.28
4318 4880 2.840102 CCCCCTGAGAGGCTACCG 60.840 72.222 0.00 0.00 32.73 4.02
4333 4895 0.760572 CCATTGGATCATTTGCCCCC 59.239 55.000 0.00 0.00 0.00 5.40
4334 4896 1.690352 CTCCATTGGATCATTTGCCCC 59.310 52.381 5.70 0.00 0.00 5.80
4335 4897 2.669781 TCTCCATTGGATCATTTGCCC 58.330 47.619 5.70 0.00 0.00 5.36
4336 4898 3.703052 ACTTCTCCATTGGATCATTTGCC 59.297 43.478 5.70 0.00 0.00 4.52
4337 4899 4.996788 ACTTCTCCATTGGATCATTTGC 57.003 40.909 5.70 0.00 0.00 3.68
4338 4900 7.972277 CACTTTACTTCTCCATTGGATCATTTG 59.028 37.037 5.70 0.00 0.00 2.32
4339 4901 7.123247 CCACTTTACTTCTCCATTGGATCATTT 59.877 37.037 5.70 0.00 0.00 2.32
4340 4902 6.604795 CCACTTTACTTCTCCATTGGATCATT 59.395 38.462 5.70 0.00 0.00 2.57
4341 4903 6.125029 CCACTTTACTTCTCCATTGGATCAT 58.875 40.000 5.70 0.00 0.00 2.45
4342 4904 5.500234 CCACTTTACTTCTCCATTGGATCA 58.500 41.667 5.70 0.00 0.00 2.92
4343 4905 4.884164 CCCACTTTACTTCTCCATTGGATC 59.116 45.833 5.70 0.00 0.00 3.36
4344 4906 4.325344 CCCCACTTTACTTCTCCATTGGAT 60.325 45.833 5.70 0.00 0.00 3.41
4345 4907 3.010138 CCCCACTTTACTTCTCCATTGGA 59.990 47.826 5.05 5.05 0.00 3.53
4346 4908 3.356290 CCCCACTTTACTTCTCCATTGG 58.644 50.000 0.00 0.00 0.00 3.16
4347 4909 2.755103 GCCCCACTTTACTTCTCCATTG 59.245 50.000 0.00 0.00 0.00 2.82
4348 4910 2.378547 TGCCCCACTTTACTTCTCCATT 59.621 45.455 0.00 0.00 0.00 3.16
4349 4911 1.992557 TGCCCCACTTTACTTCTCCAT 59.007 47.619 0.00 0.00 0.00 3.41
4350 4912 1.440618 TGCCCCACTTTACTTCTCCA 58.559 50.000 0.00 0.00 0.00 3.86
4351 4913 2.579410 TTGCCCCACTTTACTTCTCC 57.421 50.000 0.00 0.00 0.00 3.71
4352 4914 4.142038 TCTTTTGCCCCACTTTACTTCTC 58.858 43.478 0.00 0.00 0.00 2.87
4353 4915 4.178956 TCTTTTGCCCCACTTTACTTCT 57.821 40.909 0.00 0.00 0.00 2.85
4354 4916 4.082190 GGATCTTTTGCCCCACTTTACTTC 60.082 45.833 0.00 0.00 0.00 3.01
4355 4917 3.832490 GGATCTTTTGCCCCACTTTACTT 59.168 43.478 0.00 0.00 0.00 2.24
4356 4918 3.181423 TGGATCTTTTGCCCCACTTTACT 60.181 43.478 0.00 0.00 0.00 2.24
4357 4919 3.161866 TGGATCTTTTGCCCCACTTTAC 58.838 45.455 0.00 0.00 0.00 2.01
4358 4920 3.534357 TGGATCTTTTGCCCCACTTTA 57.466 42.857 0.00 0.00 0.00 1.85
4359 4921 2.397044 TGGATCTTTTGCCCCACTTT 57.603 45.000 0.00 0.00 0.00 2.66
4360 4922 2.397044 TTGGATCTTTTGCCCCACTT 57.603 45.000 0.00 0.00 0.00 3.16
4361 4923 2.629017 ATTGGATCTTTTGCCCCACT 57.371 45.000 0.00 0.00 0.00 4.00
4362 4924 3.261643 AGAAATTGGATCTTTTGCCCCAC 59.738 43.478 0.00 0.00 0.00 4.61
4363 4925 3.515104 GAGAAATTGGATCTTTTGCCCCA 59.485 43.478 0.00 0.00 0.00 4.96
4364 4926 3.429410 CGAGAAATTGGATCTTTTGCCCC 60.429 47.826 0.00 0.00 0.00 5.80
4365 4927 3.429410 CCGAGAAATTGGATCTTTTGCCC 60.429 47.826 0.00 0.00 0.00 5.36
4366 4928 3.193479 ACCGAGAAATTGGATCTTTTGCC 59.807 43.478 0.00 0.00 0.00 4.52
4367 4929 4.415735 GACCGAGAAATTGGATCTTTTGC 58.584 43.478 0.00 0.00 0.00 3.68
4368 4930 4.437390 CCGACCGAGAAATTGGATCTTTTG 60.437 45.833 0.00 0.00 0.00 2.44
4369 4931 3.689649 CCGACCGAGAAATTGGATCTTTT 59.310 43.478 0.00 0.00 0.00 2.27
4370 4932 3.270877 CCGACCGAGAAATTGGATCTTT 58.729 45.455 0.00 0.00 0.00 2.52
4371 4933 2.236395 ACCGACCGAGAAATTGGATCTT 59.764 45.455 0.00 0.00 0.00 2.40
4372 4934 1.831736 ACCGACCGAGAAATTGGATCT 59.168 47.619 0.00 0.00 0.00 2.75
4373 4935 1.933853 CACCGACCGAGAAATTGGATC 59.066 52.381 0.00 0.00 0.00 3.36
4374 4936 1.553248 TCACCGACCGAGAAATTGGAT 59.447 47.619 0.00 0.00 0.00 3.41
4375 4937 0.970640 TCACCGACCGAGAAATTGGA 59.029 50.000 0.00 0.00 0.00 3.53
4376 4938 1.732259 CTTCACCGACCGAGAAATTGG 59.268 52.381 0.00 0.00 0.00 3.16
4377 4939 1.732259 CCTTCACCGACCGAGAAATTG 59.268 52.381 0.00 0.00 0.00 2.32
4378 4940 1.944430 GCCTTCACCGACCGAGAAATT 60.944 52.381 0.00 0.00 0.00 1.82
4379 4941 0.391263 GCCTTCACCGACCGAGAAAT 60.391 55.000 0.00 0.00 0.00 2.17
4380 4942 1.005394 GCCTTCACCGACCGAGAAA 60.005 57.895 0.00 0.00 0.00 2.52
4381 4943 2.654877 GCCTTCACCGACCGAGAA 59.345 61.111 0.00 0.00 0.00 2.87
4382 4944 3.379445 GGCCTTCACCGACCGAGA 61.379 66.667 0.00 0.00 0.00 4.04
4404 4966 4.733542 AAACCATGCCCCGGACCG 62.734 66.667 6.99 6.99 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.