Multiple sequence alignment - TraesCS4D01G197200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G197200 chr4D 100.000 4110 0 0 1 4110 341921813 341925922 0.000000e+00 7590.0
1 TraesCS4D01G197200 chr4D 92.826 1129 63 14 1992 3106 341696240 341695116 0.000000e+00 1620.0
2 TraesCS4D01G197200 chr4D 97.835 508 11 0 996 1503 341697082 341696575 0.000000e+00 878.0
3 TraesCS4D01G197200 chr4D 97.143 105 1 2 1616 1720 298543469 298543571 4.220000e-40 176.0
4 TraesCS4D01G197200 chr4D 96.117 103 4 0 1613 1715 380460962 380461064 7.070000e-38 169.0
5 TraesCS4D01G197200 chr4B 96.480 1676 55 3 1710 3383 424060869 424062542 0.000000e+00 2765.0
6 TraesCS4D01G197200 chr4B 92.905 1635 63 30 1 1617 424059272 424060871 0.000000e+00 2327.0
7 TraesCS4D01G197200 chr4B 96.095 973 37 1 2135 3106 423776187 423775215 0.000000e+00 1585.0
8 TraesCS4D01G197200 chr4B 97.835 508 11 0 996 1503 423777152 423776645 0.000000e+00 878.0
9 TraesCS4D01G197200 chr4B 92.982 114 7 1 1599 1712 404456258 404456146 9.140000e-37 165.0
10 TraesCS4D01G197200 chr4B 93.151 73 2 3 3691 3763 10596694 10596625 2.020000e-18 104.0
11 TraesCS4D01G197200 chr4B 85.714 84 10 2 3496 3579 424063350 424063431 2.040000e-13 87.9
12 TraesCS4D01G197200 chr4A 93.588 1466 54 29 1992 3437 124405092 124403647 0.000000e+00 2150.0
13 TraesCS4D01G197200 chr4A 90.731 1629 64 38 1 1561 124406916 124405307 0.000000e+00 2091.0
14 TraesCS4D01G197200 chr4A 92.864 1121 68 9 1996 3106 125028781 125029899 0.000000e+00 1616.0
15 TraesCS4D01G197200 chr4A 97.228 505 14 0 996 1500 125027942 125028446 0.000000e+00 856.0
16 TraesCS4D01G197200 chr4A 88.561 271 7 2 3431 3701 124403535 124403289 1.440000e-79 307.0
17 TraesCS4D01G197200 chr4A 93.056 72 5 0 1546 1617 125028553 125028624 5.620000e-19 106.0
18 TraesCS4D01G197200 chr5D 95.017 883 44 0 2227 3109 483227761 483226879 0.000000e+00 1387.0
19 TraesCS4D01G197200 chr5D 94.886 880 45 0 2227 3106 483371377 483370498 0.000000e+00 1376.0
20 TraesCS4D01G197200 chr5D 95.842 481 19 1 992 1472 483228785 483228306 0.000000e+00 776.0
21 TraesCS4D01G197200 chr5D 95.816 478 19 1 994 1471 483372420 483371944 0.000000e+00 771.0
22 TraesCS4D01G197200 chr5D 92.331 326 12 6 3764 4089 122633110 122632798 6.260000e-123 451.0
23 TraesCS4D01G197200 chr5D 91.768 328 14 4 3764 4089 298985824 298985508 1.050000e-120 444.0
24 TraesCS4D01G197200 chr5B 94.677 883 47 0 2227 3109 593659272 593658390 0.000000e+00 1371.0
25 TraesCS4D01G197200 chr5B 94.318 880 50 0 2227 3106 593944221 593943342 0.000000e+00 1349.0
26 TraesCS4D01G197200 chr5B 96.444 478 16 1 994 1471 593945333 593944857 0.000000e+00 787.0
27 TraesCS4D01G197200 chr5A 96.058 482 18 1 994 1475 604312716 604312236 0.000000e+00 784.0
28 TraesCS4D01G197200 chr5A 91.212 330 16 5 3764 4089 706265258 706264938 1.750000e-118 436.0
29 TraesCS4D01G197200 chr5A 97.980 99 2 0 1614 1712 66095769 66095867 5.460000e-39 172.0
30 TraesCS4D01G197200 chr5A 95.385 65 3 0 3699 3763 443585147 443585211 2.020000e-18 104.0
31 TraesCS4D01G197200 chr7A 91.317 334 12 6 3764 4091 68889890 68890212 1.360000e-119 440.0
32 TraesCS4D01G197200 chr3A 91.045 335 16 6 3764 4096 739340600 739340278 1.360000e-119 440.0
33 TraesCS4D01G197200 chr3A 93.103 290 15 5 3764 4050 429318789 429319076 1.770000e-113 420.0
34 TraesCS4D01G197200 chr3A 90.909 77 6 1 3687 3763 739340702 739340627 7.270000e-18 102.0
35 TraesCS4D01G197200 chr2A 86.988 415 15 8 3703 4089 709835037 709835440 8.160000e-117 431.0
36 TraesCS4D01G197200 chr2A 90.606 330 17 6 3764 4089 516203044 516203363 3.800000e-115 425.0
37 TraesCS4D01G197200 chr2A 90.634 331 15 3 3764 4089 630098636 630098317 3.800000e-115 425.0
38 TraesCS4D01G197200 chr2A 83.070 443 29 20 3686 4094 761012778 761013208 1.090000e-95 361.0
39 TraesCS4D01G197200 chr2A 92.857 70 4 1 3693 3761 681507543 681507474 2.610000e-17 100.0
40 TraesCS4D01G197200 chr1A 83.412 422 27 18 3699 4089 522953993 522953584 6.540000e-93 351.0
41 TraesCS4D01G197200 chr6B 85.373 335 25 15 3771 4098 45769880 45770197 3.960000e-85 326.0
42 TraesCS4D01G197200 chr6D 82.254 417 33 17 3701 4089 335605715 335606118 5.130000e-84 322.0
43 TraesCS4D01G197200 chr6D 93.860 114 3 3 1600 1712 51507534 51507424 7.070000e-38 169.0
44 TraesCS4D01G197200 chr2D 82.353 323 37 12 3771 4092 627141059 627140756 3.150000e-66 263.0
45 TraesCS4D01G197200 chr7D 97.030 101 3 0 1615 1715 407261302 407261202 1.960000e-38 171.0
46 TraesCS4D01G197200 chr3B 96.154 104 3 1 1616 1719 225173869 225173971 7.070000e-38 169.0
47 TraesCS4D01G197200 chr1B 94.444 108 6 0 1605 1712 240501915 240501808 2.540000e-37 167.0
48 TraesCS4D01G197200 chr1B 91.525 118 9 1 1605 1722 629828619 629828503 1.180000e-35 161.0
49 TraesCS4D01G197200 chr6A 96.875 64 1 1 3701 3763 16433870 16433933 5.620000e-19 106.0
50 TraesCS4D01G197200 chr2B 77.215 158 29 6 646 797 750329859 750329703 7.320000e-13 86.1
51 TraesCS4D01G197200 chrUn 94.872 39 2 0 4055 4093 32055027 32055065 1.230000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G197200 chr4D 341921813 341925922 4109 False 7590.000000 7590 100.000000 1 4110 1 chr4D.!!$F2 4109
1 TraesCS4D01G197200 chr4D 341695116 341697082 1966 True 1249.000000 1620 95.330500 996 3106 2 chr4D.!!$R1 2110
2 TraesCS4D01G197200 chr4B 424059272 424063431 4159 False 1726.633333 2765 91.699667 1 3579 3 chr4B.!!$F1 3578
3 TraesCS4D01G197200 chr4B 423775215 423777152 1937 True 1231.500000 1585 96.965000 996 3106 2 chr4B.!!$R3 2110
4 TraesCS4D01G197200 chr4A 124403289 124406916 3627 True 1516.000000 2150 90.960000 1 3701 3 chr4A.!!$R1 3700
5 TraesCS4D01G197200 chr4A 125027942 125029899 1957 False 859.333333 1616 94.382667 996 3106 3 chr4A.!!$F1 2110
6 TraesCS4D01G197200 chr5D 483226879 483228785 1906 True 1081.500000 1387 95.429500 992 3109 2 chr5D.!!$R3 2117
7 TraesCS4D01G197200 chr5D 483370498 483372420 1922 True 1073.500000 1376 95.351000 994 3106 2 chr5D.!!$R4 2112
8 TraesCS4D01G197200 chr5B 593658390 593659272 882 True 1371.000000 1371 94.677000 2227 3109 1 chr5B.!!$R1 882
9 TraesCS4D01G197200 chr5B 593943342 593945333 1991 True 1068.000000 1349 95.381000 994 3106 2 chr5B.!!$R2 2112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 572 1.130054 TATCCCCAGCCATCTCCAGC 61.130 60.000 0.0 0.0 0.00 4.85 F
1245 1317 1.072331 GCCCTCTGGAAGTTTGAGACA 59.928 52.381 0.0 0.0 33.76 3.41 F
2875 3391 1.519455 GACCAAGATCGACAGGCGG 60.519 63.158 0.0 0.0 41.33 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 2938 1.338200 GGCTCGTTGATCTGGTCAAGT 60.338 52.381 3.05 0.0 46.99 3.16 R
3052 3568 0.685097 CGGTTGGGTCCTTCTTCTCA 59.315 55.000 0.00 0.0 0.00 3.27 R
3837 5072 0.039035 TGGGAAATCTTTGACCCCGG 59.961 55.000 0.00 0.0 41.44 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.794278 TTATGTCGAGGTGCTTTGTCTA 57.206 40.909 0.00 0.00 0.00 2.59
118 126 7.772332 ATGAAAAGATAGCAAAGTAGTACCG 57.228 36.000 0.00 0.00 0.00 4.02
119 127 6.103997 TGAAAAGATAGCAAAGTAGTACCGG 58.896 40.000 0.00 0.00 0.00 5.28
121 129 6.780457 AAAGATAGCAAAGTAGTACCGGTA 57.220 37.500 11.16 11.16 0.00 4.02
122 130 5.764487 AGATAGCAAAGTAGTACCGGTAC 57.236 43.478 33.16 33.16 36.35 3.34
277 317 8.576442 CCCATTCATCAACCTGTAAAATATACC 58.424 37.037 0.00 0.00 0.00 2.73
472 521 1.820481 CCTCCTCGTCCTCTCGGTC 60.820 68.421 0.00 0.00 0.00 4.79
502 551 2.954792 TCCTTCGAGGTTAGTATCCCC 58.045 52.381 0.00 0.00 36.53 4.81
515 572 1.130054 TATCCCCAGCCATCTCCAGC 61.130 60.000 0.00 0.00 0.00 4.85
536 593 2.152112 CGCGCTTAGATCTTCATCGTTC 59.848 50.000 5.56 0.00 33.75 3.95
712 770 6.850360 ATTCACTACGAAATTGCTAGAGCAGT 60.850 38.462 4.11 0.00 44.28 4.40
720 778 1.446792 GCTAGAGCAGTCGCAAGCA 60.447 57.895 0.00 0.00 42.27 3.91
732 790 2.921754 GTCGCAAGCACGAAGTATTACT 59.078 45.455 0.00 0.00 44.93 2.24
737 795 5.445939 CGCAAGCACGAAGTATTACTGAATT 60.446 40.000 0.00 0.00 41.61 2.17
778 836 4.232188 TCTGTCGGTAGATGGACTAGTT 57.768 45.455 0.00 0.00 34.31 2.24
794 865 6.866770 TGGACTAGTTTCTCAATTTCGTAGTG 59.133 38.462 0.00 0.00 0.00 2.74
821 892 7.369803 ACTAGTGATTGCAAACTATCTGTTG 57.630 36.000 1.71 0.00 39.13 3.33
822 893 5.633830 AGTGATTGCAAACTATCTGTTGG 57.366 39.130 1.71 0.00 39.13 3.77
861 932 5.521010 TCAGTTTGTAAATCGTCTTCGTGTT 59.479 36.000 0.00 0.00 38.33 3.32
871 942 3.117794 CGTCTTCGTGTTGTGTTTCCTA 58.882 45.455 0.00 0.00 0.00 2.94
873 944 4.365723 GTCTTCGTGTTGTGTTTCCTAGA 58.634 43.478 0.00 0.00 0.00 2.43
874 945 4.989168 GTCTTCGTGTTGTGTTTCCTAGAT 59.011 41.667 0.00 0.00 0.00 1.98
875 946 5.118817 GTCTTCGTGTTGTGTTTCCTAGATC 59.881 44.000 0.00 0.00 0.00 2.75
876 947 4.866508 TCGTGTTGTGTTTCCTAGATCT 57.133 40.909 0.00 0.00 0.00 2.75
902 973 2.336809 CCGCAGTCCGATAGCCTC 59.663 66.667 0.00 0.00 40.02 4.70
924 995 6.584184 CCTCGACTGCTGATATATTAGTGTTG 59.416 42.308 6.40 9.05 0.00 3.33
926 997 5.691754 CGACTGCTGATATATTAGTGTTGCA 59.308 40.000 6.40 0.00 0.00 4.08
930 1001 7.011763 ACTGCTGATATATTAGTGTTGCAAGTG 59.988 37.037 0.00 0.00 0.00 3.16
948 1019 2.819608 AGTGCATGCCAGTTATTCGTTT 59.180 40.909 16.68 0.00 0.00 3.60
1245 1317 1.072331 GCCCTCTGGAAGTTTGAGACA 59.928 52.381 0.00 0.00 33.76 3.41
1519 1621 4.883585 CCATGTATAGATGTTGCTGGTTGT 59.116 41.667 8.88 0.00 0.00 3.32
1521 1623 6.127647 CCATGTATAGATGTTGCTGGTTGTTT 60.128 38.462 8.88 0.00 0.00 2.83
1528 1630 4.364415 TGTTGCTGGTTGTTTGACTTAC 57.636 40.909 0.00 0.00 0.00 2.34
1588 1901 3.927758 TGCTGCACACATATTTTGAATGC 59.072 39.130 0.00 0.00 39.00 3.56
1614 1989 7.699391 CAGTGGTCTAATTGTATGCTTGATTTG 59.301 37.037 0.00 0.00 0.00 2.32
1615 1990 7.394359 AGTGGTCTAATTGTATGCTTGATTTGT 59.606 33.333 0.00 0.00 0.00 2.83
1616 1991 8.673711 GTGGTCTAATTGTATGCTTGATTTGTA 58.326 33.333 0.00 0.00 0.00 2.41
1617 1992 8.673711 TGGTCTAATTGTATGCTTGATTTGTAC 58.326 33.333 0.00 0.00 0.00 2.90
1618 1993 8.893727 GGTCTAATTGTATGCTTGATTTGTACT 58.106 33.333 0.00 0.00 0.00 2.73
1619 1994 9.922305 GTCTAATTGTATGCTTGATTTGTACTC 57.078 33.333 0.00 0.00 0.00 2.59
1620 1995 9.109393 TCTAATTGTATGCTTGATTTGTACTCC 57.891 33.333 0.00 0.00 0.00 3.85
1621 1996 6.699575 ATTGTATGCTTGATTTGTACTCCC 57.300 37.500 0.00 0.00 0.00 4.30
1622 1997 5.435686 TGTATGCTTGATTTGTACTCCCT 57.564 39.130 0.00 0.00 0.00 4.20
1623 1998 5.428253 TGTATGCTTGATTTGTACTCCCTC 58.572 41.667 0.00 0.00 0.00 4.30
1624 1999 3.350219 TGCTTGATTTGTACTCCCTCC 57.650 47.619 0.00 0.00 0.00 4.30
1625 2000 2.280628 GCTTGATTTGTACTCCCTCCG 58.719 52.381 0.00 0.00 0.00 4.63
1626 2001 2.354805 GCTTGATTTGTACTCCCTCCGT 60.355 50.000 0.00 0.00 0.00 4.69
1627 2002 3.868754 GCTTGATTTGTACTCCCTCCGTT 60.869 47.826 0.00 0.00 0.00 4.44
1628 2003 3.604875 TGATTTGTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
1629 2004 2.235402 TGATTTGTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
1630 2005 1.719529 TTTGTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
1631 2006 1.719529 TTGTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
1632 2007 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
1633 2008 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
1634 2009 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
1635 2010 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
1636 2011 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1637 2012 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1638 2013 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1639 2014 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1640 2015 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1641 2016 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1642 2017 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1643 2018 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1644 2019 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1645 2020 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1646 2021 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1647 2022 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1648 2023 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1649 2024 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1650 2025 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1651 2026 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1652 2027 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1653 2028 7.893302 TCCAAAATAGATGACCCAACTTTGTAT 59.107 33.333 0.00 0.00 0.00 2.29
1654 2029 8.531146 CCAAAATAGATGACCCAACTTTGTATT 58.469 33.333 0.00 0.00 0.00 1.89
1658 2033 9.975218 AATAGATGACCCAACTTTGTATTAAGT 57.025 29.630 0.00 0.00 39.97 2.24
1659 2034 9.975218 ATAGATGACCCAACTTTGTATTAAGTT 57.025 29.630 0.00 0.00 46.42 2.66
1660 2035 8.706322 AGATGACCCAACTTTGTATTAAGTTT 57.294 30.769 0.00 0.00 43.85 2.66
1661 2036 8.576442 AGATGACCCAACTTTGTATTAAGTTTG 58.424 33.333 0.00 0.00 43.85 2.93
1662 2037 7.648039 TGACCCAACTTTGTATTAAGTTTGT 57.352 32.000 0.00 0.00 43.85 2.83
1663 2038 8.749026 TGACCCAACTTTGTATTAAGTTTGTA 57.251 30.769 0.00 0.00 43.85 2.41
1664 2039 8.623030 TGACCCAACTTTGTATTAAGTTTGTAC 58.377 33.333 0.00 0.00 43.85 2.90
1665 2040 8.756486 ACCCAACTTTGTATTAAGTTTGTACT 57.244 30.769 0.00 0.00 43.85 2.73
1666 2041 9.850198 ACCCAACTTTGTATTAAGTTTGTACTA 57.150 29.630 0.00 0.00 43.85 1.82
1688 2063 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
1689 2064 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
1690 2065 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
1691 2066 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
1692 2067 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
1693 2068 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
1694 2069 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
1695 2070 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
1696 2071 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1697 2072 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1698 2073 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1699 2074 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1700 2075 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1701 2076 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1702 2077 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1703 2078 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1704 2079 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1705 2080 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1706 2081 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1707 2082 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1708 2083 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1726 2101 6.572509 CGGAGGGAGTAGTACATTTGGATATG 60.573 46.154 2.52 0.00 0.00 1.78
1750 2125 5.294552 GCCAGCTTCTACCTGTAGTTTTATG 59.705 44.000 4.36 0.22 34.84 1.90
1778 2153 9.383519 GATTCCATACTGTCTTTTGTTATCTCA 57.616 33.333 0.00 0.00 0.00 3.27
1794 2169 6.326323 TGTTATCTCATACTGCCATTCCTACA 59.674 38.462 0.00 0.00 0.00 2.74
1806 2181 4.202315 GCCATTCCTACAGTTTTTGGGTTT 60.202 41.667 0.00 0.00 0.00 3.27
1834 2209 7.195646 CAGTTGATTGTTCTGCTGTTCTAAAA 58.804 34.615 0.00 0.00 0.00 1.52
1849 2224 8.642020 GCTGTTCTAAAATTTATGCTCACTTTG 58.358 33.333 0.00 0.00 0.00 2.77
1866 2241 4.801891 ACTTTGTGTGATAAATGCTGCTG 58.198 39.130 0.00 0.00 0.00 4.41
1892 2272 7.534918 GTGCAATTTCATTTTTGTTTATGCCTC 59.465 33.333 0.00 0.00 0.00 4.70
1920 2300 6.701340 ACAGTAATCATGTCTCTTGCTGTTA 58.299 36.000 13.41 0.00 41.16 2.41
1934 2314 3.824133 TGCTGTTATCTGCTGGCAATAT 58.176 40.909 0.00 0.00 38.91 1.28
1936 2316 4.070716 GCTGTTATCTGCTGGCAATATCT 58.929 43.478 0.00 0.00 35.98 1.98
2058 2528 6.058183 ACTAGTTGATTGTTCTGCTGTTCTT 58.942 36.000 0.00 0.00 0.00 2.52
2117 2587 8.677300 TGGTGCAATTTCTTATCTCTTTATGAC 58.323 33.333 0.00 0.00 0.00 3.06
2479 2995 2.694305 CCCCTCCGTCTTCCCCTA 59.306 66.667 0.00 0.00 0.00 3.53
2875 3391 1.519455 GACCAAGATCGACAGGCGG 60.519 63.158 0.00 0.00 41.33 6.13
3052 3568 0.179004 TTGGTGTCATCAAGGGCGTT 60.179 50.000 0.00 0.00 0.00 4.84
3113 3629 5.449725 GCTGCCATCAAGAAGAAGTAATTCC 60.450 44.000 0.00 0.00 0.00 3.01
3317 3838 2.774234 CCTGGATGTTATGAGACCTGGT 59.226 50.000 0.00 0.00 35.81 4.00
3515 4750 2.405892 AAAGAAATGACGTGCAGCAC 57.594 45.000 16.21 16.21 0.00 4.40
3559 4794 9.985730 ATCAAAGCTCAAATTCAATAGTTTTGA 57.014 25.926 11.08 11.08 46.21 2.69
3560 4795 9.248291 TCAAAGCTCAAATTCAATAGTTTTGAC 57.752 29.630 6.58 0.00 41.31 3.18
3561 4796 9.252962 CAAAGCTCAAATTCAATAGTTTTGACT 57.747 29.630 0.00 0.00 40.48 3.41
3632 4867 2.443887 CAATTGGTTGCTCCACTTGG 57.556 50.000 17.14 0.00 46.44 3.61
3633 4868 1.688197 CAATTGGTTGCTCCACTTGGT 59.312 47.619 17.14 0.00 46.44 3.67
3653 4888 1.476891 TCCAAGAGCACCGACTGATAC 59.523 52.381 0.00 0.00 0.00 2.24
3701 4936 7.426606 TTGTGTAGTAGGGATATAAGTTGCA 57.573 36.000 0.00 0.00 0.00 4.08
3702 4937 7.426606 TGTGTAGTAGGGATATAAGTTGCAA 57.573 36.000 0.00 0.00 0.00 4.08
3703 4938 7.853299 TGTGTAGTAGGGATATAAGTTGCAAA 58.147 34.615 0.00 0.00 0.00 3.68
3704 4939 8.322828 TGTGTAGTAGGGATATAAGTTGCAAAA 58.677 33.333 0.00 0.00 0.00 2.44
3705 4940 9.169592 GTGTAGTAGGGATATAAGTTGCAAAAA 57.830 33.333 0.00 0.00 0.00 1.94
3706 4941 9.914834 TGTAGTAGGGATATAAGTTGCAAAAAT 57.085 29.630 0.00 0.00 0.00 1.82
3708 4943 7.716612 AGTAGGGATATAAGTTGCAAAAATGC 58.283 34.615 0.00 0.00 0.00 3.56
3709 4944 6.543430 AGGGATATAAGTTGCAAAAATGCA 57.457 33.333 0.00 0.00 43.81 3.96
3710 4945 7.128234 AGGGATATAAGTTGCAAAAATGCAT 57.872 32.000 0.00 0.00 44.94 3.96
3711 4946 8.248904 AGGGATATAAGTTGCAAAAATGCATA 57.751 30.769 0.00 0.00 44.94 3.14
3712 4947 8.873144 AGGGATATAAGTTGCAAAAATGCATAT 58.127 29.630 0.00 3.00 44.94 1.78
3713 4948 8.928733 GGGATATAAGTTGCAAAAATGCATATG 58.071 33.333 0.00 0.00 44.94 1.78
3714 4949 9.695526 GGATATAAGTTGCAAAAATGCATATGA 57.304 29.630 6.97 0.00 44.94 2.15
3716 4951 5.789710 AAGTTGCAAAAATGCATATGAGC 57.210 34.783 6.97 3.27 44.94 4.26
3717 4952 5.080969 AGTTGCAAAAATGCATATGAGCT 57.919 34.783 6.97 0.00 44.94 4.09
3718 4953 5.107133 AGTTGCAAAAATGCATATGAGCTC 58.893 37.500 6.82 6.82 44.94 4.09
3719 4954 4.994907 TGCAAAAATGCATATGAGCTCT 57.005 36.364 16.19 3.04 40.23 4.09
3720 4955 4.928601 TGCAAAAATGCATATGAGCTCTC 58.071 39.130 16.19 0.00 40.23 3.20
3721 4956 3.973135 GCAAAAATGCATATGAGCTCTCG 59.027 43.478 16.19 1.63 34.99 4.04
3722 4957 4.534168 CAAAAATGCATATGAGCTCTCGG 58.466 43.478 16.19 3.16 34.99 4.63
3723 4958 2.469274 AATGCATATGAGCTCTCGGG 57.531 50.000 16.19 3.54 34.99 5.14
3724 4959 1.346062 ATGCATATGAGCTCTCGGGT 58.654 50.000 16.19 0.00 34.99 5.28
3725 4960 0.390492 TGCATATGAGCTCTCGGGTG 59.610 55.000 16.19 7.87 34.99 4.61
3726 4961 0.948141 GCATATGAGCTCTCGGGTGC 60.948 60.000 16.19 13.60 0.00 5.01
3727 4962 0.678395 CATATGAGCTCTCGGGTGCT 59.322 55.000 12.49 12.49 43.76 4.40
3728 4963 1.889170 CATATGAGCTCTCGGGTGCTA 59.111 52.381 12.63 0.00 41.57 3.49
3729 4964 1.319541 TATGAGCTCTCGGGTGCTAC 58.680 55.000 12.63 6.82 41.57 3.58
3730 4965 1.729470 ATGAGCTCTCGGGTGCTACG 61.729 60.000 12.63 0.00 41.57 3.51
3731 4966 3.759766 GAGCTCTCGGGTGCTACGC 62.760 68.421 12.63 0.00 41.57 4.42
3732 4967 4.874977 GCTCTCGGGTGCTACGCC 62.875 72.222 1.17 0.00 0.00 5.68
3739 4974 4.203245 GGTGCTACGCCCCCTATA 57.797 61.111 0.00 0.00 0.00 1.31
3740 4975 2.680066 GGTGCTACGCCCCCTATAT 58.320 57.895 0.00 0.00 0.00 0.86
3741 4976 0.981943 GGTGCTACGCCCCCTATATT 59.018 55.000 0.00 0.00 0.00 1.28
3742 4977 1.066358 GGTGCTACGCCCCCTATATTC 60.066 57.143 0.00 0.00 0.00 1.75
3743 4978 1.621814 GTGCTACGCCCCCTATATTCA 59.378 52.381 0.00 0.00 0.00 2.57
3744 4979 2.038033 GTGCTACGCCCCCTATATTCAA 59.962 50.000 0.00 0.00 0.00 2.69
3745 4980 2.706723 TGCTACGCCCCCTATATTCAAA 59.293 45.455 0.00 0.00 0.00 2.69
3746 4981 3.136809 TGCTACGCCCCCTATATTCAAAA 59.863 43.478 0.00 0.00 0.00 2.44
3747 4982 4.139038 GCTACGCCCCCTATATTCAAAAA 58.861 43.478 0.00 0.00 0.00 1.94
3748 4983 4.765339 GCTACGCCCCCTATATTCAAAAAT 59.235 41.667 0.00 0.00 0.00 1.82
3749 4984 5.941647 GCTACGCCCCCTATATTCAAAAATA 59.058 40.000 0.00 0.00 0.00 1.40
3750 4985 6.431852 GCTACGCCCCCTATATTCAAAAATAA 59.568 38.462 0.00 0.00 31.28 1.40
3751 4986 7.122204 GCTACGCCCCCTATATTCAAAAATAAT 59.878 37.037 0.00 0.00 31.28 1.28
3752 4987 7.849322 ACGCCCCCTATATTCAAAAATAATT 57.151 32.000 0.00 0.00 31.28 1.40
3753 4988 8.257602 ACGCCCCCTATATTCAAAAATAATTT 57.742 30.769 0.00 0.00 31.28 1.82
3754 4989 9.369672 ACGCCCCCTATATTCAAAAATAATTTA 57.630 29.630 0.00 0.00 31.28 1.40
3755 4990 9.855021 CGCCCCCTATATTCAAAAATAATTTAG 57.145 33.333 0.00 0.00 31.28 1.85
3787 5022 9.874205 CATTTATGAAATCAAACATAACCAGGT 57.126 29.630 0.00 0.00 38.25 4.00
3792 5027 7.319646 TGAAATCAAACATAACCAGGTATTGC 58.680 34.615 0.00 0.00 0.00 3.56
3793 5028 6.849085 AATCAAACATAACCAGGTATTGCA 57.151 33.333 0.00 0.00 0.00 4.08
3794 5029 5.637006 TCAAACATAACCAGGTATTGCAC 57.363 39.130 0.00 0.00 0.00 4.57
3795 5030 5.321102 TCAAACATAACCAGGTATTGCACT 58.679 37.500 0.00 0.00 0.00 4.40
3796 5031 5.414454 TCAAACATAACCAGGTATTGCACTC 59.586 40.000 0.00 0.00 0.00 3.51
3797 5032 3.531538 ACATAACCAGGTATTGCACTCG 58.468 45.455 0.00 0.00 0.00 4.18
3798 5033 3.055385 ACATAACCAGGTATTGCACTCGT 60.055 43.478 0.00 0.00 0.00 4.18
3799 5034 4.160814 ACATAACCAGGTATTGCACTCGTA 59.839 41.667 0.00 0.00 0.00 3.43
3800 5035 3.906720 AACCAGGTATTGCACTCGTAT 57.093 42.857 0.00 0.00 0.00 3.06
3801 5036 6.041182 ACATAACCAGGTATTGCACTCGTATA 59.959 38.462 0.00 0.00 0.00 1.47
3802 5037 5.347620 AACCAGGTATTGCACTCGTATAA 57.652 39.130 0.00 0.00 0.00 0.98
3803 5038 5.347620 ACCAGGTATTGCACTCGTATAAA 57.652 39.130 0.00 0.00 0.00 1.40
3804 5039 5.736813 ACCAGGTATTGCACTCGTATAAAA 58.263 37.500 0.00 0.00 0.00 1.52
3805 5040 6.174760 ACCAGGTATTGCACTCGTATAAAAA 58.825 36.000 0.00 0.00 0.00 1.94
3806 5041 6.315393 ACCAGGTATTGCACTCGTATAAAAAG 59.685 38.462 0.00 0.00 0.00 2.27
3807 5042 6.537301 CCAGGTATTGCACTCGTATAAAAAGA 59.463 38.462 0.00 0.00 0.00 2.52
3808 5043 7.065324 CCAGGTATTGCACTCGTATAAAAAGAA 59.935 37.037 0.00 0.00 0.00 2.52
3809 5044 8.612619 CAGGTATTGCACTCGTATAAAAAGAAT 58.387 33.333 0.00 0.00 0.00 2.40
3810 5045 9.174166 AGGTATTGCACTCGTATAAAAAGAATT 57.826 29.630 0.00 0.00 0.00 2.17
3811 5046 9.434559 GGTATTGCACTCGTATAAAAAGAATTC 57.565 33.333 0.00 0.00 0.00 2.17
3812 5047 9.982291 GTATTGCACTCGTATAAAAAGAATTCA 57.018 29.630 8.44 0.00 0.00 2.57
3817 5052 9.651718 GCACTCGTATAAAAAGAATTCAATAGG 57.348 33.333 8.44 3.88 0.00 2.57
3840 5075 7.996385 AGGAAATTGACTTTTATTGTATCCGG 58.004 34.615 0.00 0.00 0.00 5.14
3841 5076 7.068226 AGGAAATTGACTTTTATTGTATCCGGG 59.932 37.037 0.00 0.00 0.00 5.73
3842 5077 6.709018 AATTGACTTTTATTGTATCCGGGG 57.291 37.500 0.00 0.00 0.00 5.73
3843 5078 4.847990 TGACTTTTATTGTATCCGGGGT 57.152 40.909 0.00 0.00 0.00 4.95
3844 5079 4.773013 TGACTTTTATTGTATCCGGGGTC 58.227 43.478 0.00 0.00 0.00 4.46
3845 5080 4.225492 TGACTTTTATTGTATCCGGGGTCA 59.775 41.667 0.00 0.00 0.00 4.02
3846 5081 5.182169 ACTTTTATTGTATCCGGGGTCAA 57.818 39.130 0.00 5.06 0.00 3.18
3847 5082 5.572252 ACTTTTATTGTATCCGGGGTCAAA 58.428 37.500 0.00 0.00 0.00 2.69
3848 5083 5.650703 ACTTTTATTGTATCCGGGGTCAAAG 59.349 40.000 0.00 2.79 0.00 2.77
3849 5084 5.438698 TTTATTGTATCCGGGGTCAAAGA 57.561 39.130 0.00 0.00 0.00 2.52
3850 5085 5.640158 TTATTGTATCCGGGGTCAAAGAT 57.360 39.130 0.00 0.00 0.00 2.40
3851 5086 4.519906 ATTGTATCCGGGGTCAAAGATT 57.480 40.909 0.00 0.00 0.00 2.40
3852 5087 4.310022 TTGTATCCGGGGTCAAAGATTT 57.690 40.909 0.00 0.00 0.00 2.17
3853 5088 3.881220 TGTATCCGGGGTCAAAGATTTC 58.119 45.455 0.00 0.00 0.00 2.17
3854 5089 2.437085 ATCCGGGGTCAAAGATTTCC 57.563 50.000 0.00 0.00 0.00 3.13
3855 5090 0.330267 TCCGGGGTCAAAGATTTCCC 59.670 55.000 0.00 0.00 39.22 3.97
3856 5091 0.039035 CCGGGGTCAAAGATTTCCCA 59.961 55.000 0.00 0.00 41.51 4.37
3857 5092 1.549037 CCGGGGTCAAAGATTTCCCAA 60.549 52.381 0.00 0.00 41.51 4.12
3858 5093 2.243810 CGGGGTCAAAGATTTCCCAAA 58.756 47.619 0.00 0.00 41.51 3.28
3859 5094 2.630580 CGGGGTCAAAGATTTCCCAAAA 59.369 45.455 0.00 0.00 41.51 2.44
3860 5095 3.070302 CGGGGTCAAAGATTTCCCAAAAA 59.930 43.478 0.00 0.00 41.51 1.94
3883 5118 9.461312 AAAAATGCCAGATACAAGTACTATTCA 57.539 29.630 0.00 0.00 0.00 2.57
3884 5119 9.632638 AAAATGCCAGATACAAGTACTATTCAT 57.367 29.630 0.00 0.00 0.00 2.57
3885 5120 8.613060 AATGCCAGATACAAGTACTATTCATG 57.387 34.615 0.00 0.00 0.00 3.07
3886 5121 5.991606 TGCCAGATACAAGTACTATTCATGC 59.008 40.000 0.00 0.00 0.00 4.06
3887 5122 6.183361 TGCCAGATACAAGTACTATTCATGCT 60.183 38.462 0.00 0.00 0.00 3.79
3888 5123 7.015195 TGCCAGATACAAGTACTATTCATGCTA 59.985 37.037 0.00 0.00 0.00 3.49
3889 5124 8.037758 GCCAGATACAAGTACTATTCATGCTAT 58.962 37.037 0.00 0.00 0.00 2.97
3927 5162 2.861462 TTTTTGCCCTGAAGTCAACG 57.139 45.000 0.00 0.00 0.00 4.10
3928 5163 2.045561 TTTTGCCCTGAAGTCAACGA 57.954 45.000 0.00 0.00 0.00 3.85
3929 5164 1.593196 TTTGCCCTGAAGTCAACGAG 58.407 50.000 0.00 0.00 0.00 4.18
3930 5165 0.756294 TTGCCCTGAAGTCAACGAGA 59.244 50.000 0.00 0.00 0.00 4.04
3931 5166 0.756294 TGCCCTGAAGTCAACGAGAA 59.244 50.000 0.00 0.00 0.00 2.87
3932 5167 1.347707 TGCCCTGAAGTCAACGAGAAT 59.652 47.619 0.00 0.00 0.00 2.40
3933 5168 2.224523 TGCCCTGAAGTCAACGAGAATT 60.225 45.455 0.00 0.00 37.23 2.17
3934 5169 3.007506 TGCCCTGAAGTCAACGAGAATTA 59.992 43.478 0.00 0.00 34.14 1.40
3935 5170 4.192317 GCCCTGAAGTCAACGAGAATTAT 58.808 43.478 0.00 0.00 34.14 1.28
3936 5171 4.636206 GCCCTGAAGTCAACGAGAATTATT 59.364 41.667 0.00 0.00 34.14 1.40
3937 5172 5.220681 GCCCTGAAGTCAACGAGAATTATTC 60.221 44.000 0.00 0.00 34.14 1.75
3938 5173 5.294552 CCCTGAAGTCAACGAGAATTATTCC 59.705 44.000 0.78 0.00 34.14 3.01
3939 5174 6.109359 CCTGAAGTCAACGAGAATTATTCCT 58.891 40.000 0.78 0.00 34.14 3.36
3940 5175 6.595716 CCTGAAGTCAACGAGAATTATTCCTT 59.404 38.462 0.78 0.00 34.14 3.36
3941 5176 7.201565 CCTGAAGTCAACGAGAATTATTCCTTC 60.202 40.741 0.78 6.21 34.14 3.46
3942 5177 6.310467 TGAAGTCAACGAGAATTATTCCTTCG 59.690 38.462 12.82 12.82 34.14 3.79
3943 5178 4.567159 AGTCAACGAGAATTATTCCTTCGC 59.433 41.667 13.88 1.93 32.54 4.70
3944 5179 3.869246 TCAACGAGAATTATTCCTTCGCC 59.131 43.478 13.88 0.00 32.54 5.54
3945 5180 3.536956 ACGAGAATTATTCCTTCGCCA 57.463 42.857 13.88 0.00 32.54 5.69
3946 5181 3.869065 ACGAGAATTATTCCTTCGCCAA 58.131 40.909 13.88 0.00 32.54 4.52
3947 5182 4.258543 ACGAGAATTATTCCTTCGCCAAA 58.741 39.130 13.88 0.00 32.54 3.28
3948 5183 4.094442 ACGAGAATTATTCCTTCGCCAAAC 59.906 41.667 13.88 0.00 32.54 2.93
3949 5184 4.094294 CGAGAATTATTCCTTCGCCAAACA 59.906 41.667 0.78 0.00 0.00 2.83
3950 5185 5.220854 CGAGAATTATTCCTTCGCCAAACAT 60.221 40.000 0.78 0.00 0.00 2.71
3951 5186 6.530019 AGAATTATTCCTTCGCCAAACATT 57.470 33.333 0.78 0.00 0.00 2.71
3952 5187 6.935167 AGAATTATTCCTTCGCCAAACATTT 58.065 32.000 0.78 0.00 0.00 2.32
3953 5188 7.386059 AGAATTATTCCTTCGCCAAACATTTT 58.614 30.769 0.78 0.00 0.00 1.82
3954 5189 8.527810 AGAATTATTCCTTCGCCAAACATTTTA 58.472 29.630 0.78 0.00 0.00 1.52
3955 5190 9.313118 GAATTATTCCTTCGCCAAACATTTTAT 57.687 29.630 0.00 0.00 0.00 1.40
3958 5193 9.743057 TTATTCCTTCGCCAAACATTTTATATG 57.257 29.630 0.00 0.00 0.00 1.78
3959 5194 7.397892 TTCCTTCGCCAAACATTTTATATGA 57.602 32.000 0.00 0.00 0.00 2.15
3960 5195 7.026631 TCCTTCGCCAAACATTTTATATGAG 57.973 36.000 0.00 0.00 0.00 2.90
3961 5196 6.601613 TCCTTCGCCAAACATTTTATATGAGT 59.398 34.615 0.00 0.00 0.00 3.41
3962 5197 7.771361 TCCTTCGCCAAACATTTTATATGAGTA 59.229 33.333 0.00 0.00 0.00 2.59
3963 5198 7.855904 CCTTCGCCAAACATTTTATATGAGTAC 59.144 37.037 0.00 0.00 0.00 2.73
3964 5199 7.851387 TCGCCAAACATTTTATATGAGTACA 57.149 32.000 0.00 0.00 0.00 2.90
3965 5200 8.270080 TCGCCAAACATTTTATATGAGTACAA 57.730 30.769 0.00 0.00 0.00 2.41
3966 5201 8.898761 TCGCCAAACATTTTATATGAGTACAAT 58.101 29.630 0.00 0.00 0.00 2.71
4064 5299 3.330720 GGGGGTGAGGTGGTGGAG 61.331 72.222 0.00 0.00 0.00 3.86
4065 5300 4.035102 GGGGTGAGGTGGTGGAGC 62.035 72.222 0.00 0.00 0.00 4.70
4066 5301 3.249189 GGGTGAGGTGGTGGAGCA 61.249 66.667 0.00 0.00 0.00 4.26
4067 5302 2.032681 GGTGAGGTGGTGGAGCAC 59.967 66.667 0.15 0.15 0.00 4.40
4084 5319 2.044123 CACCCAAGTGCTCCTAATCC 57.956 55.000 0.00 0.00 37.14 3.01
4085 5320 0.541863 ACCCAAGTGCTCCTAATCCG 59.458 55.000 0.00 0.00 0.00 4.18
4086 5321 0.815615 CCCAAGTGCTCCTAATCCGC 60.816 60.000 0.00 0.00 0.00 5.54
4087 5322 0.179000 CCAAGTGCTCCTAATCCGCT 59.821 55.000 0.00 0.00 0.00 5.52
4088 5323 1.407437 CCAAGTGCTCCTAATCCGCTT 60.407 52.381 0.00 0.00 0.00 4.68
4089 5324 2.359900 CAAGTGCTCCTAATCCGCTTT 58.640 47.619 0.00 0.00 0.00 3.51
4090 5325 2.317530 AGTGCTCCTAATCCGCTTTC 57.682 50.000 0.00 0.00 0.00 2.62
4091 5326 1.834263 AGTGCTCCTAATCCGCTTTCT 59.166 47.619 0.00 0.00 0.00 2.52
4092 5327 3.031736 AGTGCTCCTAATCCGCTTTCTA 58.968 45.455 0.00 0.00 0.00 2.10
4093 5328 3.643792 AGTGCTCCTAATCCGCTTTCTAT 59.356 43.478 0.00 0.00 0.00 1.98
4094 5329 4.833380 AGTGCTCCTAATCCGCTTTCTATA 59.167 41.667 0.00 0.00 0.00 1.31
4095 5330 5.304614 AGTGCTCCTAATCCGCTTTCTATAA 59.695 40.000 0.00 0.00 0.00 0.98
4096 5331 5.635700 GTGCTCCTAATCCGCTTTCTATAAG 59.364 44.000 0.00 0.00 0.00 1.73
4097 5332 5.304614 TGCTCCTAATCCGCTTTCTATAAGT 59.695 40.000 0.00 0.00 0.00 2.24
4098 5333 6.183360 TGCTCCTAATCCGCTTTCTATAAGTT 60.183 38.462 0.00 0.00 0.00 2.66
4099 5334 6.146347 GCTCCTAATCCGCTTTCTATAAGTTG 59.854 42.308 0.00 0.00 0.00 3.16
4100 5335 5.989777 TCCTAATCCGCTTTCTATAAGTTGC 59.010 40.000 0.00 0.00 0.00 4.17
4101 5336 5.179555 CCTAATCCGCTTTCTATAAGTTGCC 59.820 44.000 0.00 0.00 0.00 4.52
4102 5337 2.546778 TCCGCTTTCTATAAGTTGCCG 58.453 47.619 0.00 0.00 0.00 5.69
4103 5338 1.597663 CCGCTTTCTATAAGTTGCCGG 59.402 52.381 0.00 0.00 0.00 6.13
4104 5339 2.277084 CGCTTTCTATAAGTTGCCGGT 58.723 47.619 1.90 0.00 0.00 5.28
4105 5340 3.450578 CGCTTTCTATAAGTTGCCGGTA 58.549 45.455 1.90 0.00 0.00 4.02
4106 5341 4.056050 CGCTTTCTATAAGTTGCCGGTAT 58.944 43.478 1.90 0.00 0.00 2.73
4107 5342 4.150098 CGCTTTCTATAAGTTGCCGGTATC 59.850 45.833 1.90 0.00 0.00 2.24
4108 5343 5.298347 GCTTTCTATAAGTTGCCGGTATCT 58.702 41.667 1.90 0.00 0.00 1.98
4109 5344 5.758784 GCTTTCTATAAGTTGCCGGTATCTT 59.241 40.000 18.19 18.19 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.828785 AGCACCTCGACATAATAAAAATTCCT 59.171 34.615 0.00 0.00 0.00 3.36
26 27 7.027778 AGCACCTCGACATAATAAAAATTCC 57.972 36.000 0.00 0.00 0.00 3.01
102 110 4.199310 TCGTACCGGTACTACTTTGCTAT 58.801 43.478 35.31 0.00 34.04 2.97
117 125 6.368516 TGTTTTACCCTTCTTATTTCGTACCG 59.631 38.462 0.00 0.00 0.00 4.02
118 126 7.671495 TGTTTTACCCTTCTTATTTCGTACC 57.329 36.000 0.00 0.00 0.00 3.34
171 208 1.152247 TGTGGAGACTGGAGCAGGT 60.152 57.895 0.00 0.00 35.51 4.00
416 456 1.557371 GGGAAGAAAGGGGACTGAGAG 59.443 57.143 0.00 0.00 42.68 3.20
417 457 1.657804 GGGAAGAAAGGGGACTGAGA 58.342 55.000 0.00 0.00 42.68 3.27
472 521 1.045911 CCTCGAAGGAAGGAGAGGGG 61.046 65.000 2.61 0.00 44.78 4.79
515 572 1.759994 ACGATGAAGATCTAAGCGCG 58.240 50.000 13.96 0.00 0.00 6.86
712 770 2.921121 CAGTAATACTTCGTGCTTGCGA 59.079 45.455 0.00 0.00 39.28 5.10
720 778 7.878477 TCGAAACAATTCAGTAATACTTCGT 57.122 32.000 6.73 0.00 34.91 3.85
732 790 6.869315 TCAACCAAGTATCGAAACAATTCA 57.131 33.333 0.00 0.00 35.15 2.57
737 795 5.995282 ACAGATTCAACCAAGTATCGAAACA 59.005 36.000 0.00 0.00 0.00 2.83
778 836 8.570488 TCACTAGTTACACTACGAAATTGAGAA 58.430 33.333 0.00 0.00 0.00 2.87
794 865 8.480643 ACAGATAGTTTGCAATCACTAGTTAC 57.519 34.615 14.56 1.32 0.00 2.50
821 892 2.797786 ACTGATCGGGCTAGATCTACC 58.202 52.381 18.79 5.66 45.35 3.18
822 893 4.038162 ACAAACTGATCGGGCTAGATCTAC 59.962 45.833 18.79 0.00 45.35 2.59
871 942 1.076350 ACTGCGGGCCTAGATAGATCT 59.924 52.381 0.84 0.00 40.86 2.75
873 944 1.551452 GACTGCGGGCCTAGATAGAT 58.449 55.000 0.84 0.00 0.00 1.98
874 945 0.539901 GGACTGCGGGCCTAGATAGA 60.540 60.000 11.39 0.00 0.00 1.98
875 946 1.867919 CGGACTGCGGGCCTAGATAG 61.868 65.000 17.55 0.00 0.00 2.08
876 947 1.901948 CGGACTGCGGGCCTAGATA 60.902 63.158 17.55 0.00 0.00 1.98
902 973 5.691754 TGCAACACTAATATATCAGCAGTCG 59.308 40.000 0.00 0.00 0.00 4.18
924 995 2.533266 GAATAACTGGCATGCACTTGC 58.467 47.619 21.36 3.60 42.01 4.01
926 997 2.436417 ACGAATAACTGGCATGCACTT 58.564 42.857 21.36 9.36 0.00 3.16
930 1001 2.923020 CCAAAACGAATAACTGGCATGC 59.077 45.455 9.90 9.90 0.00 4.06
941 1012 4.106909 GACAAAAACGGACCAAAACGAAT 58.893 39.130 0.00 0.00 0.00 3.34
948 1019 7.489757 CAGAAAAATTAGACAAAAACGGACCAA 59.510 33.333 0.00 0.00 0.00 3.67
1245 1317 1.690352 ACGGTGCAGTAGTACTTGGTT 59.310 47.619 0.00 0.00 0.00 3.67
1519 1621 8.040727 TCATATAGCAAGCTCAAGTAAGTCAAA 58.959 33.333 0.00 0.00 0.00 2.69
1521 1623 7.112452 TCATATAGCAAGCTCAAGTAAGTCA 57.888 36.000 0.00 0.00 0.00 3.41
1528 1630 6.623114 GCAATGGATCATATAGCAAGCTCAAG 60.623 42.308 0.00 0.00 0.00 3.02
1588 1901 6.932356 ATCAAGCATACAATTAGACCACTG 57.068 37.500 0.00 0.00 0.00 3.66
1614 1989 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
1615 1990 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1616 1991 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1617 1992 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1618 1993 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1619 1994 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1620 1995 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1621 1996 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1622 1997 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1623 1998 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1624 1999 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1625 2000 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1626 2001 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1627 2002 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1628 2003 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1632 2007 9.975218 ACTTAATACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 36.26 1.73
1633 2008 9.975218 AACTTAATACAAAGTTGGGTCATCTAT 57.025 29.630 1.41 0.00 45.60 1.98
1634 2009 9.802039 AAACTTAATACAAAGTTGGGTCATCTA 57.198 29.630 2.97 0.00 46.40 1.98
1635 2010 8.576442 CAAACTTAATACAAAGTTGGGTCATCT 58.424 33.333 2.97 0.00 46.40 2.90
1636 2011 8.357402 ACAAACTTAATACAAAGTTGGGTCATC 58.643 33.333 8.34 0.00 46.40 2.92
1637 2012 8.245195 ACAAACTTAATACAAAGTTGGGTCAT 57.755 30.769 8.34 0.00 46.40 3.06
1638 2013 7.648039 ACAAACTTAATACAAAGTTGGGTCA 57.352 32.000 8.34 0.00 46.40 4.02
1639 2014 8.843262 AGTACAAACTTAATACAAAGTTGGGTC 58.157 33.333 8.34 2.29 46.40 4.46
1640 2015 8.756486 AGTACAAACTTAATACAAAGTTGGGT 57.244 30.769 8.34 9.34 46.40 4.51
1662 2037 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
1663 2038 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
1664 2039 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
1665 2040 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
1666 2041 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
1667 2042 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
1668 2043 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
1669 2044 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
1670 2045 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1671 2046 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1672 2047 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1673 2048 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
1674 2049 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1675 2050 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1676 2051 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1677 2052 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1678 2053 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1679 2054 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1680 2055 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1681 2056 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1682 2057 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1683 2058 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1684 2059 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1685 2060 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1686 2061 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1687 2062 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1688 2063 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1689 2064 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1690 2065 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1691 2066 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1692 2067 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1693 2068 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1694 2069 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1695 2070 2.225091 TGTACTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
1696 2071 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
1697 2072 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
1698 2073 4.430908 CAAATGTACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
1699 2074 3.197116 CCAAATGTACTACTCCCTCCGTT 59.803 47.826 0.00 0.00 0.00 4.44
1700 2075 2.764572 CCAAATGTACTACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
1701 2076 3.028850 TCCAAATGTACTACTCCCTCCG 58.971 50.000 0.00 0.00 0.00 4.63
1702 2077 6.702329 CATATCCAAATGTACTACTCCCTCC 58.298 44.000 0.00 0.00 0.00 4.30
1703 2078 6.166982 GCATATCCAAATGTACTACTCCCTC 58.833 44.000 0.00 0.00 0.00 4.30
1704 2079 5.013183 GGCATATCCAAATGTACTACTCCCT 59.987 44.000 0.00 0.00 34.01 4.20
1705 2080 5.221843 TGGCATATCCAAATGTACTACTCCC 60.222 44.000 0.00 0.00 43.21 4.30
1706 2081 5.865085 TGGCATATCCAAATGTACTACTCC 58.135 41.667 0.00 0.00 43.21 3.85
1707 2082 5.409826 GCTGGCATATCCAAATGTACTACTC 59.590 44.000 0.00 0.00 46.01 2.59
1708 2083 5.072329 AGCTGGCATATCCAAATGTACTACT 59.928 40.000 0.00 0.00 46.01 2.57
1750 2125 9.606631 AGATAACAAAAGACAGTATGGAATCTC 57.393 33.333 0.00 0.00 43.62 2.75
1778 2153 5.418840 CCAAAAACTGTAGGAATGGCAGTAT 59.581 40.000 0.00 0.00 41.94 2.12
1794 2169 6.070481 ACAATCAACTGGTAAACCCAAAAACT 60.070 34.615 0.00 0.00 44.65 2.66
1806 2181 4.085357 ACAGCAGAACAATCAACTGGTA 57.915 40.909 0.00 0.00 39.74 3.25
1810 2185 6.942532 TTTAGAACAGCAGAACAATCAACT 57.057 33.333 0.00 0.00 0.00 3.16
1849 2224 2.095110 TGCACAGCAGCATTTATCACAC 60.095 45.455 0.00 0.00 40.11 3.82
1856 2231 3.114668 TGAAATTGCACAGCAGCATTT 57.885 38.095 0.00 2.34 45.19 2.32
1858 2233 3.328382 AATGAAATTGCACAGCAGCAT 57.672 38.095 0.00 0.00 45.19 3.79
1866 2241 7.361894 AGGCATAAACAAAAATGAAATTGCAC 58.638 30.769 0.00 0.00 36.10 4.57
1892 2272 7.332926 ACAGCAAGAGACATGATTACTGTAAAG 59.667 37.037 4.11 0.00 34.30 1.85
1895 2275 6.286240 ACAGCAAGAGACATGATTACTGTA 57.714 37.500 0.00 0.00 34.30 2.74
1897 2277 7.710044 AGATAACAGCAAGAGACATGATTACTG 59.290 37.037 0.00 1.97 0.00 2.74
1920 2300 5.061853 CACTGTAAGATATTGCCAGCAGAT 58.938 41.667 0.00 0.00 37.43 2.90
1934 2314 5.480422 TCAGAACTAAGATGGCACTGTAAGA 59.520 40.000 0.00 0.00 37.43 2.10
1936 2316 5.246203 ACTCAGAACTAAGATGGCACTGTAA 59.754 40.000 0.00 0.00 0.00 2.41
2058 2528 7.606073 TGATTGCACTAAGTGAGCATAAACTTA 59.394 33.333 0.00 0.00 41.58 2.24
2080 2550 3.688694 AATTGCACCACAGCATTGATT 57.311 38.095 0.00 0.00 45.19 2.57
2082 2552 2.629137 AGAAATTGCACCACAGCATTGA 59.371 40.909 0.00 0.00 45.19 2.57
2085 2555 4.708421 AGATAAGAAATTGCACCACAGCAT 59.292 37.500 0.00 0.00 45.19 3.79
2092 2562 8.897752 AGTCATAAAGAGATAAGAAATTGCACC 58.102 33.333 0.00 0.00 0.00 5.01
2117 2587 7.766278 AGCAATAGACAAGATTACTACAACCAG 59.234 37.037 0.00 0.00 0.00 4.00
2422 2938 1.338200 GGCTCGTTGATCTGGTCAAGT 60.338 52.381 3.05 0.00 46.99 3.16
2479 2995 4.766891 CCACCAATCTTGTAAACATCCTGT 59.233 41.667 0.00 0.00 0.00 4.00
2875 3391 0.827368 CCTCCAGCTCCTTACCAGAC 59.173 60.000 0.00 0.00 0.00 3.51
3052 3568 0.685097 CGGTTGGGTCCTTCTTCTCA 59.315 55.000 0.00 0.00 0.00 3.27
3113 3629 8.991243 AAACAGTGATTTGGATATCAATTGTG 57.009 30.769 5.13 0.00 36.02 3.33
3288 3809 4.288366 TCTCATAACATCCAGGTTTCACCA 59.712 41.667 0.00 0.00 41.95 4.17
3317 3838 9.944663 CAACAAGCTAGTATTAAAAGACACAAA 57.055 29.630 0.00 0.00 0.00 2.83
3494 4145 3.884169 GTGCTGCACGTCATTTCTTTTA 58.116 40.909 17.93 0.00 0.00 1.52
3515 4750 7.703621 AGCTTTGATTATTTGATGAAACCATCG 59.296 33.333 0.00 0.00 42.50 3.84
3551 4786 1.225376 CGCCGTGGCAGTCAAAACTA 61.225 55.000 12.06 0.00 42.06 2.24
3552 4787 2.542907 CGCCGTGGCAGTCAAAACT 61.543 57.895 12.06 0.00 42.06 2.66
3553 4788 2.051345 CGCCGTGGCAGTCAAAAC 60.051 61.111 12.06 0.00 42.06 2.43
3554 4789 2.515057 ACGCCGTGGCAGTCAAAA 60.515 55.556 12.06 0.00 42.06 2.44
3632 4867 0.247736 ATCAGTCGGTGCTCTTGGAC 59.752 55.000 0.00 0.00 0.00 4.02
3633 4868 1.476891 GTATCAGTCGGTGCTCTTGGA 59.523 52.381 0.00 0.00 0.00 3.53
3653 4888 1.871080 AGTGACAAAGAGCGGAGTTG 58.129 50.000 0.00 0.00 0.00 3.16
3701 4936 3.567164 CCCGAGAGCTCATATGCATTTTT 59.433 43.478 17.77 0.00 34.99 1.94
3702 4937 3.144506 CCCGAGAGCTCATATGCATTTT 58.855 45.455 17.77 0.00 34.99 1.82
3703 4938 2.105477 ACCCGAGAGCTCATATGCATTT 59.895 45.455 17.77 0.00 34.99 2.32
3704 4939 1.696336 ACCCGAGAGCTCATATGCATT 59.304 47.619 17.77 0.00 34.99 3.56
3705 4940 1.001746 CACCCGAGAGCTCATATGCAT 59.998 52.381 17.77 3.79 34.99 3.96
3706 4941 0.390492 CACCCGAGAGCTCATATGCA 59.610 55.000 17.77 0.00 34.99 3.96
3707 4942 0.948141 GCACCCGAGAGCTCATATGC 60.948 60.000 17.77 13.77 0.00 3.14
3708 4943 0.678395 AGCACCCGAGAGCTCATATG 59.322 55.000 17.77 7.72 34.53 1.78
3709 4944 1.889829 GTAGCACCCGAGAGCTCATAT 59.110 52.381 17.77 0.00 40.65 1.78
3710 4945 1.319541 GTAGCACCCGAGAGCTCATA 58.680 55.000 17.77 0.00 40.65 2.15
3711 4946 1.729470 CGTAGCACCCGAGAGCTCAT 61.729 60.000 17.77 0.29 40.65 2.90
3712 4947 2.407428 CGTAGCACCCGAGAGCTCA 61.407 63.158 17.77 0.00 40.65 4.26
3713 4948 2.409651 CGTAGCACCCGAGAGCTC 59.590 66.667 5.27 5.27 40.65 4.09
3726 4961 7.989416 TTATTTTTGAATATAGGGGGCGTAG 57.011 36.000 0.00 0.00 0.00 3.51
3727 4962 8.943594 AATTATTTTTGAATATAGGGGGCGTA 57.056 30.769 0.00 0.00 0.00 4.42
3728 4963 7.849322 AATTATTTTTGAATATAGGGGGCGT 57.151 32.000 0.00 0.00 0.00 5.68
3729 4964 9.855021 CTAAATTATTTTTGAATATAGGGGGCG 57.145 33.333 0.00 0.00 0.00 6.13
3761 4996 9.874205 ACCTGGTTATGTTTGATTTCATAAATG 57.126 29.630 0.00 0.00 37.96 2.32
3766 5001 7.981225 GCAATACCTGGTTATGTTTGATTTCAT 59.019 33.333 3.84 0.00 0.00 2.57
3767 5002 7.039434 TGCAATACCTGGTTATGTTTGATTTCA 60.039 33.333 3.84 0.00 0.00 2.69
3768 5003 7.275560 GTGCAATACCTGGTTATGTTTGATTTC 59.724 37.037 3.84 0.00 0.00 2.17
3769 5004 7.039082 AGTGCAATACCTGGTTATGTTTGATTT 60.039 33.333 3.84 0.00 0.00 2.17
3770 5005 6.437162 AGTGCAATACCTGGTTATGTTTGATT 59.563 34.615 3.84 0.00 0.00 2.57
3771 5006 5.951747 AGTGCAATACCTGGTTATGTTTGAT 59.048 36.000 3.84 0.00 0.00 2.57
3772 5007 5.321102 AGTGCAATACCTGGTTATGTTTGA 58.679 37.500 3.84 0.00 0.00 2.69
3773 5008 5.640732 GAGTGCAATACCTGGTTATGTTTG 58.359 41.667 3.84 3.51 0.00 2.93
3774 5009 4.394920 CGAGTGCAATACCTGGTTATGTTT 59.605 41.667 3.84 0.00 0.00 2.83
3775 5010 3.938963 CGAGTGCAATACCTGGTTATGTT 59.061 43.478 3.84 0.00 0.00 2.71
3776 5011 3.055385 ACGAGTGCAATACCTGGTTATGT 60.055 43.478 3.84 0.00 0.00 2.29
3777 5012 3.531538 ACGAGTGCAATACCTGGTTATG 58.468 45.455 3.84 5.90 0.00 1.90
3778 5013 3.906720 ACGAGTGCAATACCTGGTTAT 57.093 42.857 3.84 0.00 0.00 1.89
3779 5014 6.468333 TTATACGAGTGCAATACCTGGTTA 57.532 37.500 3.84 0.00 0.00 2.85
3780 5015 3.906720 ATACGAGTGCAATACCTGGTT 57.093 42.857 3.84 0.00 0.00 3.67
3781 5016 5.347620 TTTATACGAGTGCAATACCTGGT 57.652 39.130 4.05 4.05 0.00 4.00
3782 5017 6.537301 TCTTTTTATACGAGTGCAATACCTGG 59.463 38.462 0.00 0.00 0.00 4.45
3783 5018 7.534085 TCTTTTTATACGAGTGCAATACCTG 57.466 36.000 0.00 0.00 0.00 4.00
3784 5019 8.732746 ATTCTTTTTATACGAGTGCAATACCT 57.267 30.769 0.00 0.00 0.00 3.08
3785 5020 9.434559 GAATTCTTTTTATACGAGTGCAATACC 57.565 33.333 0.00 0.00 0.00 2.73
3786 5021 9.982291 TGAATTCTTTTTATACGAGTGCAATAC 57.018 29.630 7.05 0.00 0.00 1.89
3791 5026 9.651718 CCTATTGAATTCTTTTTATACGAGTGC 57.348 33.333 7.05 0.00 0.00 4.40
3814 5049 9.116067 CCGGATACAATAAAAGTCAATTTCCTA 57.884 33.333 0.00 0.00 0.00 2.94
3815 5050 7.068226 CCCGGATACAATAAAAGTCAATTTCCT 59.932 37.037 0.73 0.00 0.00 3.36
3816 5051 7.200455 CCCGGATACAATAAAAGTCAATTTCC 58.800 38.462 0.73 0.00 0.00 3.13
3817 5052 7.147966 ACCCCGGATACAATAAAAGTCAATTTC 60.148 37.037 0.73 0.00 0.00 2.17
3818 5053 6.666113 ACCCCGGATACAATAAAAGTCAATTT 59.334 34.615 0.73 0.00 0.00 1.82
3819 5054 6.192044 ACCCCGGATACAATAAAAGTCAATT 58.808 36.000 0.73 0.00 0.00 2.32
3820 5055 5.762279 ACCCCGGATACAATAAAAGTCAAT 58.238 37.500 0.73 0.00 0.00 2.57
3821 5056 5.182169 ACCCCGGATACAATAAAAGTCAA 57.818 39.130 0.73 0.00 0.00 3.18
3822 5057 4.225492 TGACCCCGGATACAATAAAAGTCA 59.775 41.667 0.73 0.00 0.00 3.41
3823 5058 4.773013 TGACCCCGGATACAATAAAAGTC 58.227 43.478 0.73 0.00 0.00 3.01
3824 5059 4.847990 TGACCCCGGATACAATAAAAGT 57.152 40.909 0.73 0.00 0.00 2.66
3825 5060 5.883673 TCTTTGACCCCGGATACAATAAAAG 59.116 40.000 0.73 2.25 0.00 2.27
3826 5061 5.817784 TCTTTGACCCCGGATACAATAAAA 58.182 37.500 0.73 0.00 0.00 1.52
3827 5062 5.438698 TCTTTGACCCCGGATACAATAAA 57.561 39.130 0.73 0.00 0.00 1.40
3828 5063 5.640158 ATCTTTGACCCCGGATACAATAA 57.360 39.130 0.73 0.00 0.00 1.40
3829 5064 5.640158 AATCTTTGACCCCGGATACAATA 57.360 39.130 0.73 0.00 0.00 1.90
3830 5065 4.519906 AATCTTTGACCCCGGATACAAT 57.480 40.909 0.73 0.00 0.00 2.71
3831 5066 4.266714 GAAATCTTTGACCCCGGATACAA 58.733 43.478 0.73 2.75 0.00 2.41
3832 5067 3.371166 GGAAATCTTTGACCCCGGATACA 60.371 47.826 0.73 0.00 0.00 2.29
3833 5068 3.211865 GGAAATCTTTGACCCCGGATAC 58.788 50.000 0.73 0.00 0.00 2.24
3834 5069 2.173996 GGGAAATCTTTGACCCCGGATA 59.826 50.000 0.73 0.00 36.65 2.59
3835 5070 1.063942 GGGAAATCTTTGACCCCGGAT 60.064 52.381 0.73 0.00 36.65 4.18
3836 5071 0.330267 GGGAAATCTTTGACCCCGGA 59.670 55.000 0.73 0.00 36.65 5.14
3837 5072 0.039035 TGGGAAATCTTTGACCCCGG 59.961 55.000 0.00 0.00 41.44 5.73
3838 5073 1.917872 TTGGGAAATCTTTGACCCCG 58.082 50.000 0.00 0.00 41.44 5.73
3839 5074 4.698201 TTTTTGGGAAATCTTTGACCCC 57.302 40.909 0.00 0.00 41.44 4.95
3857 5092 9.461312 TGAATAGTACTTGTATCTGGCATTTTT 57.539 29.630 0.00 0.00 0.00 1.94
3858 5093 9.632638 ATGAATAGTACTTGTATCTGGCATTTT 57.367 29.630 0.00 0.00 0.00 1.82
3859 5094 9.060347 CATGAATAGTACTTGTATCTGGCATTT 57.940 33.333 0.00 0.00 0.00 2.32
3860 5095 7.173907 GCATGAATAGTACTTGTATCTGGCATT 59.826 37.037 0.00 0.00 0.00 3.56
3861 5096 6.652481 GCATGAATAGTACTTGTATCTGGCAT 59.348 38.462 0.00 0.00 0.00 4.40
3862 5097 5.991606 GCATGAATAGTACTTGTATCTGGCA 59.008 40.000 0.00 0.00 0.00 4.92
3863 5098 6.226787 AGCATGAATAGTACTTGTATCTGGC 58.773 40.000 0.00 3.61 0.00 4.85
3908 5143 2.357637 CTCGTTGACTTCAGGGCAAAAA 59.642 45.455 0.00 0.00 45.57 1.94
3909 5144 1.946768 CTCGTTGACTTCAGGGCAAAA 59.053 47.619 0.00 0.00 45.57 2.44
3910 5145 1.140052 TCTCGTTGACTTCAGGGCAAA 59.860 47.619 0.00 0.00 45.57 3.68
3911 5146 0.756294 TCTCGTTGACTTCAGGGCAA 59.244 50.000 0.00 0.00 41.27 4.52
3912 5147 0.756294 TTCTCGTTGACTTCAGGGCA 59.244 50.000 0.00 0.00 0.00 5.36
3913 5148 2.100605 ATTCTCGTTGACTTCAGGGC 57.899 50.000 0.00 0.00 0.00 5.19
3914 5149 5.294552 GGAATAATTCTCGTTGACTTCAGGG 59.705 44.000 0.00 0.00 0.00 4.45
3915 5150 6.109359 AGGAATAATTCTCGTTGACTTCAGG 58.891 40.000 0.00 0.00 0.00 3.86
3916 5151 7.463383 CGAAGGAATAATTCTCGTTGACTTCAG 60.463 40.741 0.00 0.00 32.42 3.02
3917 5152 6.310467 CGAAGGAATAATTCTCGTTGACTTCA 59.690 38.462 0.00 0.00 32.42 3.02
3918 5153 6.697152 CGAAGGAATAATTCTCGTTGACTTC 58.303 40.000 0.00 0.00 0.00 3.01
3919 5154 5.063564 GCGAAGGAATAATTCTCGTTGACTT 59.936 40.000 0.00 0.00 32.10 3.01
3920 5155 4.567159 GCGAAGGAATAATTCTCGTTGACT 59.433 41.667 0.00 0.00 32.10 3.41
3921 5156 4.260253 GGCGAAGGAATAATTCTCGTTGAC 60.260 45.833 0.00 0.00 32.10 3.18
3922 5157 3.869246 GGCGAAGGAATAATTCTCGTTGA 59.131 43.478 0.00 0.00 32.10 3.18
3923 5158 3.621268 TGGCGAAGGAATAATTCTCGTTG 59.379 43.478 0.00 0.00 32.10 4.10
3924 5159 3.869065 TGGCGAAGGAATAATTCTCGTT 58.131 40.909 0.00 0.00 32.10 3.85
3925 5160 3.536956 TGGCGAAGGAATAATTCTCGT 57.463 42.857 0.00 0.00 32.10 4.18
3926 5161 4.094294 TGTTTGGCGAAGGAATAATTCTCG 59.906 41.667 0.00 0.00 32.49 4.04
3927 5162 5.560966 TGTTTGGCGAAGGAATAATTCTC 57.439 39.130 0.00 0.00 0.00 2.87
3928 5163 6.530019 AATGTTTGGCGAAGGAATAATTCT 57.470 33.333 0.00 0.00 0.00 2.40
3929 5164 7.595311 AAAATGTTTGGCGAAGGAATAATTC 57.405 32.000 0.00 0.00 0.00 2.17
3932 5167 9.743057 CATATAAAATGTTTGGCGAAGGAATAA 57.257 29.630 0.00 0.00 0.00 1.40
3933 5168 9.126151 TCATATAAAATGTTTGGCGAAGGAATA 57.874 29.630 0.00 0.00 0.00 1.75
3934 5169 8.006298 TCATATAAAATGTTTGGCGAAGGAAT 57.994 30.769 0.00 0.00 0.00 3.01
3935 5170 7.122055 ACTCATATAAAATGTTTGGCGAAGGAA 59.878 33.333 0.00 0.00 0.00 3.36
3936 5171 6.601613 ACTCATATAAAATGTTTGGCGAAGGA 59.398 34.615 0.00 0.00 0.00 3.36
3937 5172 6.795399 ACTCATATAAAATGTTTGGCGAAGG 58.205 36.000 0.00 0.00 0.00 3.46
3938 5173 8.394877 TGTACTCATATAAAATGTTTGGCGAAG 58.605 33.333 0.00 0.00 0.00 3.79
3939 5174 8.270080 TGTACTCATATAAAATGTTTGGCGAA 57.730 30.769 0.00 0.00 0.00 4.70
3940 5175 7.851387 TGTACTCATATAAAATGTTTGGCGA 57.149 32.000 0.00 0.00 0.00 5.54
4047 5282 3.330720 CTCCACCACCTCACCCCC 61.331 72.222 0.00 0.00 0.00 5.40
4048 5283 4.035102 GCTCCACCACCTCACCCC 62.035 72.222 0.00 0.00 0.00 4.95
4049 5284 3.249189 TGCTCCACCACCTCACCC 61.249 66.667 0.00 0.00 0.00 4.61
4050 5285 2.032681 GTGCTCCACCACCTCACC 59.967 66.667 0.00 0.00 0.00 4.02
4065 5300 1.743772 CGGATTAGGAGCACTTGGGTG 60.744 57.143 0.00 0.00 45.53 4.61
4066 5301 0.541863 CGGATTAGGAGCACTTGGGT 59.458 55.000 0.00 0.00 0.00 4.51
4067 5302 0.815615 GCGGATTAGGAGCACTTGGG 60.816 60.000 0.00 0.00 0.00 4.12
4068 5303 0.179000 AGCGGATTAGGAGCACTTGG 59.821 55.000 0.00 0.00 0.00 3.61
4069 5304 2.029838 AAGCGGATTAGGAGCACTTG 57.970 50.000 0.00 0.00 0.00 3.16
4070 5305 2.237392 AGAAAGCGGATTAGGAGCACTT 59.763 45.455 0.00 0.00 0.00 3.16
4071 5306 1.834263 AGAAAGCGGATTAGGAGCACT 59.166 47.619 0.00 0.00 0.00 4.40
4072 5307 2.317530 AGAAAGCGGATTAGGAGCAC 57.682 50.000 0.00 0.00 0.00 4.40
4073 5308 5.304614 ACTTATAGAAAGCGGATTAGGAGCA 59.695 40.000 0.00 0.00 0.00 4.26
4074 5309 5.785243 ACTTATAGAAAGCGGATTAGGAGC 58.215 41.667 0.00 0.00 0.00 4.70
4075 5310 6.146347 GCAACTTATAGAAAGCGGATTAGGAG 59.854 42.308 0.00 0.00 0.00 3.69
4076 5311 5.989777 GCAACTTATAGAAAGCGGATTAGGA 59.010 40.000 0.00 0.00 0.00 2.94
4077 5312 5.179555 GGCAACTTATAGAAAGCGGATTAGG 59.820 44.000 0.00 0.00 0.00 2.69
4078 5313 5.107453 CGGCAACTTATAGAAAGCGGATTAG 60.107 44.000 0.00 0.00 0.00 1.73
4079 5314 4.748102 CGGCAACTTATAGAAAGCGGATTA 59.252 41.667 0.00 0.00 0.00 1.75
4080 5315 3.560068 CGGCAACTTATAGAAAGCGGATT 59.440 43.478 0.00 0.00 0.00 3.01
4081 5316 3.131396 CGGCAACTTATAGAAAGCGGAT 58.869 45.455 0.00 0.00 0.00 4.18
4082 5317 2.546778 CGGCAACTTATAGAAAGCGGA 58.453 47.619 0.00 0.00 0.00 5.54
4083 5318 1.597663 CCGGCAACTTATAGAAAGCGG 59.402 52.381 0.00 0.00 0.00 5.52
4084 5319 2.277084 ACCGGCAACTTATAGAAAGCG 58.723 47.619 0.00 0.00 0.00 4.68
4085 5320 5.298347 AGATACCGGCAACTTATAGAAAGC 58.702 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.