Multiple sequence alignment - TraesCS4D01G197100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G197100 chr4D 100.000 3966 0 0 1 3966 341698077 341694112 0.000000e+00 7324.0
1 TraesCS4D01G197100 chr4D 92.826 1129 63 14 1838 2962 341923804 341924918 0.000000e+00 1620.0
2 TraesCS4D01G197100 chr4D 98.020 505 10 0 996 1500 341922808 341923312 0.000000e+00 878.0
3 TraesCS4D01G197100 chr4D 96.078 51 2 0 1571 1621 341696466 341696416 2.540000e-12 84.2
4 TraesCS4D01G197100 chr4D 96.078 51 2 0 1612 1662 341696507 341696457 2.540000e-12 84.2
5 TraesCS4D01G197100 chr4B 94.899 3529 116 28 45 3551 423778115 423774629 0.000000e+00 5461.0
6 TraesCS4D01G197100 chr4B 93.003 1129 61 15 1838 2962 424061150 424062264 0.000000e+00 1631.0
7 TraesCS4D01G197100 chr4B 98.211 503 9 0 996 1498 424060249 424060751 0.000000e+00 880.0
8 TraesCS4D01G197100 chr4B 91.429 315 19 6 3658 3964 423774489 423774175 3.660000e-115 425.0
9 TraesCS4D01G197100 chr4B 96.078 51 2 0 1612 1662 423776575 423776525 2.540000e-12 84.2
10 TraesCS4D01G197100 chr4A 91.636 2738 145 45 828 3520 125027775 125030473 0.000000e+00 3711.0
11 TraesCS4D01G197100 chr4A 93.358 1355 64 13 1614 2962 124405314 124403980 0.000000e+00 1980.0
12 TraesCS4D01G197100 chr4A 92.919 805 41 6 45 835 125027019 125027821 0.000000e+00 1157.0
13 TraesCS4D01G197100 chr4A 94.839 620 25 3 996 1615 124405884 124405272 0.000000e+00 961.0
14 TraesCS4D01G197100 chr4A 94.186 258 14 1 3709 3965 125038792 125039049 3.720000e-105 392.0
15 TraesCS4D01G197100 chr5D 94.488 889 48 1 2083 2971 483227761 483226874 0.000000e+00 1369.0
16 TraesCS4D01G197100 chr5D 94.576 885 48 0 2083 2967 483371377 483370493 0.000000e+00 1369.0
17 TraesCS4D01G197100 chr5D 95.397 478 21 1 995 1472 483228782 483228306 0.000000e+00 760.0
18 TraesCS4D01G197100 chr5B 94.363 887 49 1 2083 2969 593659272 593658387 0.000000e+00 1360.0
19 TraesCS4D01G197100 chr5B 94.350 885 50 0 2083 2967 593944221 593943337 0.000000e+00 1358.0
20 TraesCS4D01G197100 chr5B 95.798 476 19 1 996 1471 593945331 593944857 0.000000e+00 767.0
21 TraesCS4D01G197100 chr5B 95.178 477 22 1 996 1472 593660341 593659866 0.000000e+00 752.0
22 TraesCS4D01G197100 chr5A 96.017 477 18 1 996 1472 604312714 604312239 0.000000e+00 774.0
23 TraesCS4D01G197100 chr7A 96.970 33 1 0 12 44 634393457 634393425 5.540000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G197100 chr4D 341694112 341698077 3965 True 2497.466667 7324 97.385333 1 3966 3 chr4D.!!$R1 3965
1 TraesCS4D01G197100 chr4D 341922808 341924918 2110 False 1249.000000 1620 95.423000 996 2962 2 chr4D.!!$F1 1966
2 TraesCS4D01G197100 chr4B 423774175 423778115 3940 True 1990.066667 5461 94.135333 45 3964 3 chr4B.!!$R1 3919
3 TraesCS4D01G197100 chr4B 424060249 424062264 2015 False 1255.500000 1631 95.607000 996 2962 2 chr4B.!!$F1 1966
4 TraesCS4D01G197100 chr4A 125027019 125030473 3454 False 2434.000000 3711 92.277500 45 3520 2 chr4A.!!$F2 3475
5 TraesCS4D01G197100 chr4A 124403980 124405884 1904 True 1470.500000 1980 94.098500 996 2962 2 chr4A.!!$R1 1966
6 TraesCS4D01G197100 chr5D 483370493 483371377 884 True 1369.000000 1369 94.576000 2083 2967 1 chr5D.!!$R1 884
7 TraesCS4D01G197100 chr5D 483226874 483228782 1908 True 1064.500000 1369 94.942500 995 2971 2 chr5D.!!$R2 1976
8 TraesCS4D01G197100 chr5B 593943337 593945331 1994 True 1062.500000 1358 95.074000 996 2967 2 chr5B.!!$R2 1971
9 TraesCS4D01G197100 chr5B 593658387 593660341 1954 True 1056.000000 1360 94.770500 996 2969 2 chr5B.!!$R1 1973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.404040 TGAACGGCCAAGATTTCCCT 59.596 50.000 2.24 0.0 0.00 4.20 F
584 585 0.696501 ATCCGTAGTTTGCCAGGGTT 59.303 50.000 0.00 0.0 0.00 4.11 F
1389 1406 1.414550 GAGGCTGGTATCTCCAAGGAC 59.585 57.143 0.00 0.0 46.59 3.85 F
2326 3091 3.706373 TCAGACAAGCCCCTCCGC 61.706 66.667 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 2282 2.158475 ACAGGAAAAACTGCAGGGATGA 60.158 45.455 19.93 0.0 42.21 2.92 R
2374 3139 0.532862 CAGTCTCAACACGGCCAACT 60.533 55.000 2.24 0.0 0.00 3.16 R
2866 3631 0.883833 CCACAGTTTGCCTCATGTCC 59.116 55.000 0.00 0.0 0.00 4.02 R
3578 4375 0.107361 CCCCAACCCTAACACCGATC 60.107 60.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 5.128919 ACATGAATGAGCTAATCCACTTCC 58.871 41.667 0.00 0.00 0.00 3.46
100 101 3.565905 CGAGTACCAAAGTCGGTAACT 57.434 47.619 0.00 0.00 45.51 2.24
155 156 1.009108 CGCGCAATGTCCAAACACA 60.009 52.632 8.75 0.00 38.48 3.72
165 166 2.223745 GTCCAAACACACCATTACCGT 58.776 47.619 0.00 0.00 0.00 4.83
179 180 5.464389 ACCATTACCGTCTAAAACATATCGC 59.536 40.000 0.00 0.00 0.00 4.58
195 196 2.624316 TCGCTCGTACGATCAAAACT 57.376 45.000 19.87 0.00 37.09 2.66
214 215 0.404040 TGAACGGCCAAGATTTCCCT 59.596 50.000 2.24 0.00 0.00 4.20
307 308 4.537433 GAGGCATTCCGCGCTCCT 62.537 66.667 5.56 1.07 43.84 3.69
309 310 2.663188 GGCATTCCGCGCTCCTAG 60.663 66.667 5.56 0.00 43.84 3.02
404 405 3.558109 CCAGTCCCCTTCTCTTTTCAGAC 60.558 52.174 0.00 0.00 0.00 3.51
502 503 1.333177 CCGCTGGAGTATTAGGAGCT 58.667 55.000 0.00 0.00 0.00 4.09
578 579 0.733150 GCCTTGATCCGTAGTTTGCC 59.267 55.000 0.00 0.00 0.00 4.52
584 585 0.696501 ATCCGTAGTTTGCCAGGGTT 59.303 50.000 0.00 0.00 0.00 4.11
656 666 4.023536 TGCTCTTTGTTTTTATCGGTCCAC 60.024 41.667 0.00 0.00 0.00 4.02
669 679 1.532505 CGGTCCACGGACGTATACTTG 60.533 57.143 10.05 0.00 45.41 3.16
689 701 2.205074 GGTTCGTAGGATGCACAGATG 58.795 52.381 0.00 0.00 0.00 2.90
711 723 9.911788 AGATGACAGTCTTGTGGAATATTTATT 57.088 29.630 1.31 0.00 37.76 1.40
792 807 3.321039 TCTGGATGATATGCTGGAGGTT 58.679 45.455 0.00 0.00 0.00 3.50
794 809 4.166725 TCTGGATGATATGCTGGAGGTTTT 59.833 41.667 0.00 0.00 0.00 2.43
812 827 9.998106 GGAGGTTTTATAGCATCTTATTAGACA 57.002 33.333 0.00 0.00 31.99 3.41
836 851 6.308371 ACCTTTTTACTGTTAACCGTCATG 57.692 37.500 5.89 0.00 0.00 3.07
848 863 6.481976 TGTTAACCGTCATGGCATCTTATTAG 59.518 38.462 2.48 0.00 43.94 1.73
850 865 4.632153 ACCGTCATGGCATCTTATTAGAC 58.368 43.478 0.00 0.00 43.94 2.59
863 878 9.343539 GCATCTTATTAGACCCATCTTTTTACT 57.656 33.333 0.00 0.00 36.29 2.24
876 891 5.989551 TCTTTTTACTGTTAACCGTCACC 57.010 39.130 5.89 0.00 0.00 4.02
984 1001 2.735134 GTGTCGCAGTTGGGTAGTTTAG 59.265 50.000 0.00 0.00 0.00 1.85
1389 1406 1.414550 GAGGCTGGTATCTCCAAGGAC 59.585 57.143 0.00 0.00 46.59 3.85
1686 1796 9.571810 TTCATATTGCTGTACACATTTTGATTC 57.428 29.630 0.00 0.00 0.00 2.52
1782 2205 9.063615 GTAATATTAAATGGTGTAGGAGTTGGG 57.936 37.037 0.00 0.00 0.00 4.12
1857 2282 6.798427 ATGTCTATTGTCATCCTGTACTGT 57.202 37.500 0.00 0.00 0.00 3.55
2028 2791 6.811665 TCTGTTCACAATATCTTACAGTTCCG 59.188 38.462 0.00 0.00 35.64 4.30
2326 3091 3.706373 TCAGACAAGCCCCTCCGC 61.706 66.667 0.00 0.00 0.00 5.54
2497 3262 4.168291 CTCCTGGAGGCGCTTCCC 62.168 72.222 32.91 19.20 36.35 3.97
2866 3631 1.440938 TTGGTCGTTTTGCTGTCCGG 61.441 55.000 0.00 0.00 0.00 5.14
3006 3772 6.203145 CCATCTATGTCTGCTTTTGAGATCTG 59.797 42.308 0.00 0.00 0.00 2.90
3091 3857 4.048504 TGTGTCATTTGAGTACTGTCGTG 58.951 43.478 0.00 0.00 0.00 4.35
3092 3858 4.049186 GTGTCATTTGAGTACTGTCGTGT 58.951 43.478 0.00 0.00 0.00 4.49
3183 3949 5.932303 TGTTAGGCTGCTACTTTTAGTCTTG 59.068 40.000 0.00 0.00 0.00 3.02
3197 3963 0.514691 GTCTTGGCTGCTGTTTCTCG 59.485 55.000 0.00 0.00 0.00 4.04
3215 3998 1.141254 TCGTTGAAGCCTTTGGTGGTA 59.859 47.619 0.00 0.00 0.00 3.25
3250 4033 9.679661 TGATAATAGCAGGTTGTTTTCATTCTA 57.320 29.630 0.00 0.00 0.00 2.10
3296 4079 6.431234 CCATCTAGGCCTACCAAAATATGTTC 59.569 42.308 8.91 0.00 39.06 3.18
3339 4122 0.471591 TGTTGGGGCTTGCTTGGATT 60.472 50.000 0.00 0.00 0.00 3.01
3360 4146 6.864165 GGATTGTAACTACGAAAATTTTGGCA 59.136 34.615 8.47 0.00 0.00 4.92
3400 4186 7.523293 TGATCTGTTTTCAAGCCAAAAGATA 57.477 32.000 0.00 0.00 0.00 1.98
3424 4210 5.009631 AGCCATGTAGTAAAATGCAGTTCA 58.990 37.500 0.00 0.00 0.00 3.18
3520 4317 6.359883 GGAAAATAGAGTGCAAAGACGTTTTC 59.640 38.462 12.36 12.36 34.20 2.29
3557 4354 9.886132 TTAGAAAAAGATGTATAGGGACACTTC 57.114 33.333 0.00 0.00 30.52 3.01
3558 4355 7.042335 AGAAAAAGATGTATAGGGACACTTCG 58.958 38.462 0.00 0.00 30.52 3.79
3559 4356 5.934402 AAAGATGTATAGGGACACTTCGT 57.066 39.130 0.00 0.00 30.52 3.85
3560 4357 7.414222 AAAAGATGTATAGGGACACTTCGTA 57.586 36.000 0.00 0.00 30.52 3.43
3561 4358 7.414222 AAAGATGTATAGGGACACTTCGTAA 57.586 36.000 0.00 0.00 30.52 3.18
3562 4359 7.414222 AAGATGTATAGGGACACTTCGTAAA 57.586 36.000 0.00 0.00 30.52 2.01
3563 4360 7.040473 AGATGTATAGGGACACTTCGTAAAG 57.960 40.000 0.00 0.00 38.54 1.85
3564 4361 6.606395 AGATGTATAGGGACACTTCGTAAAGT 59.394 38.462 0.00 0.00 46.80 2.66
3565 4362 6.199937 TGTATAGGGACACTTCGTAAAGTC 57.800 41.667 0.00 0.00 43.99 3.01
3566 4363 5.711506 TGTATAGGGACACTTCGTAAAGTCA 59.288 40.000 0.00 0.00 43.99 3.41
3567 4364 3.382048 AGGGACACTTCGTAAAGTCAC 57.618 47.619 0.00 0.00 43.99 3.67
3568 4365 2.696707 AGGGACACTTCGTAAAGTCACA 59.303 45.455 0.00 0.00 43.99 3.58
3569 4366 3.323979 AGGGACACTTCGTAAAGTCACAT 59.676 43.478 0.00 0.00 43.99 3.21
3570 4367 3.432252 GGGACACTTCGTAAAGTCACATG 59.568 47.826 0.00 0.00 43.99 3.21
3571 4368 3.120649 GGACACTTCGTAAAGTCACATGC 60.121 47.826 0.00 0.00 43.99 4.06
3572 4369 3.462982 ACACTTCGTAAAGTCACATGCA 58.537 40.909 0.00 0.00 43.99 3.96
3573 4370 3.874543 ACACTTCGTAAAGTCACATGCAA 59.125 39.130 0.00 0.00 43.99 4.08
3574 4371 4.334203 ACACTTCGTAAAGTCACATGCAAA 59.666 37.500 0.00 0.00 43.99 3.68
3575 4372 5.008613 ACACTTCGTAAAGTCACATGCAAAT 59.991 36.000 0.00 0.00 43.99 2.32
3576 4373 5.340403 CACTTCGTAAAGTCACATGCAAATG 59.660 40.000 0.00 0.00 43.99 2.32
3577 4374 5.238432 ACTTCGTAAAGTCACATGCAAATGA 59.762 36.000 0.00 0.00 42.10 2.57
3578 4375 5.281693 TCGTAAAGTCACATGCAAATGAG 57.718 39.130 3.61 0.00 0.00 2.90
3579 4376 4.994217 TCGTAAAGTCACATGCAAATGAGA 59.006 37.500 3.61 0.00 0.00 3.27
3580 4377 5.643348 TCGTAAAGTCACATGCAAATGAGAT 59.357 36.000 3.61 0.00 0.00 2.75
3581 4378 5.961843 CGTAAAGTCACATGCAAATGAGATC 59.038 40.000 3.61 0.00 0.00 2.75
3582 4379 4.611310 AAGTCACATGCAAATGAGATCG 57.389 40.909 3.61 0.00 0.00 3.69
3583 4380 2.941064 AGTCACATGCAAATGAGATCGG 59.059 45.455 3.61 0.00 0.00 4.18
3584 4381 2.679837 GTCACATGCAAATGAGATCGGT 59.320 45.455 3.61 0.00 0.00 4.69
3585 4382 2.679336 TCACATGCAAATGAGATCGGTG 59.321 45.455 0.00 0.00 0.00 4.94
3612 4409 4.066614 GGGGGCTCCATGTACAGA 57.933 61.111 4.16 0.00 35.00 3.41
3616 4413 0.179000 GGGCTCCATGTACAGACCTG 59.821 60.000 0.33 0.00 34.51 4.00
3710 4583 9.330063 TGCAAGTGATCTAAACATTCTTATAGG 57.670 33.333 0.00 0.00 0.00 2.57
3711 4584 8.778358 GCAAGTGATCTAAACATTCTTATAGGG 58.222 37.037 0.00 0.00 0.00 3.53
3732 4610 5.009410 AGGGAATACTGTATAAGACCGTTCG 59.991 44.000 0.00 0.00 0.00 3.95
3740 4618 5.531634 TGTATAAGACCGTTCGAAAGTGTT 58.468 37.500 14.03 14.03 0.00 3.32
3751 4629 5.596922 GTTCGAAAGTGTTATGTCGAGTTC 58.403 41.667 0.00 0.00 42.83 3.01
3824 4702 7.598759 TTCTAGTCTTTGTCTTTAGGTCACT 57.401 36.000 0.00 0.00 0.00 3.41
3836 4715 7.039011 TGTCTTTAGGTCACTGAATAGACATGT 60.039 37.037 0.00 0.00 36.50 3.21
3902 4781 3.366422 GCTTTTCGAAAACTGTTTGCACA 59.634 39.130 19.08 0.00 0.00 4.57
3964 4843 9.382275 AGTTACAAAAATGTTTTCTTCTTGCAT 57.618 25.926 0.00 0.00 0.00 3.96
3965 4844 9.986833 GTTACAAAAATGTTTTCTTCTTGCATT 57.013 25.926 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.368416 AGCTCATTCATGTAACTACTCCTAATA 57.632 33.333 0.00 0.00 0.00 0.98
36 37 8.256356 AGCTCATTCATGTAACTACTCCTAAT 57.744 34.615 0.00 0.00 0.00 1.73
37 38 7.661536 AGCTCATTCATGTAACTACTCCTAA 57.338 36.000 0.00 0.00 0.00 2.69
38 39 8.762481 TTAGCTCATTCATGTAACTACTCCTA 57.238 34.615 0.00 0.00 0.00 2.94
39 40 7.661536 TTAGCTCATTCATGTAACTACTCCT 57.338 36.000 0.00 0.00 0.00 3.69
40 41 7.600752 GGATTAGCTCATTCATGTAACTACTCC 59.399 40.741 0.00 0.00 0.00 3.85
41 42 8.144478 TGGATTAGCTCATTCATGTAACTACTC 58.856 37.037 0.00 0.00 0.00 2.59
42 43 7.928706 GTGGATTAGCTCATTCATGTAACTACT 59.071 37.037 0.00 0.00 0.00 2.57
43 44 7.928706 AGTGGATTAGCTCATTCATGTAACTAC 59.071 37.037 0.00 0.00 0.00 2.73
72 73 3.009301 ACTTTGGTACTCGAAGTCACG 57.991 47.619 9.83 0.00 44.62 4.35
100 101 0.698886 CCTGGATTCCTGGGGATCCA 60.699 60.000 23.92 23.92 38.71 3.41
155 156 5.464389 GCGATATGTTTTAGACGGTAATGGT 59.536 40.000 0.00 0.00 0.00 3.55
165 166 5.408204 TCGTACGAGCGATATGTTTTAGA 57.592 39.130 15.28 0.00 35.83 2.10
179 180 3.059044 CCGTTCAGTTTTGATCGTACGAG 59.941 47.826 23.89 7.31 42.27 4.18
195 196 0.404040 AGGGAAATCTTGGCCGTTCA 59.596 50.000 0.00 0.00 0.00 3.18
214 215 0.678950 TGTCTGATGGCTGTCGTTGA 59.321 50.000 0.00 0.00 0.00 3.18
404 405 2.434884 ACAGCCATGGAGAACGCG 60.435 61.111 18.40 3.53 0.00 6.01
578 579 7.480810 GCTAACAAATTAGGAACATAACCCTG 58.519 38.462 0.00 0.00 38.64 4.45
584 585 5.220777 GCAGCGCTAACAAATTAGGAACATA 60.221 40.000 10.99 0.00 38.64 2.29
619 623 2.886862 AGAGCAGAGATGATTCGGTG 57.113 50.000 0.00 0.00 0.00 4.94
656 666 2.549633 ACGAACCAAGTATACGTCCG 57.450 50.000 0.00 0.00 31.69 4.79
669 679 2.159099 TCATCTGTGCATCCTACGAACC 60.159 50.000 0.00 0.00 0.00 3.62
689 701 9.774742 GACAAATAAATATTCCACAAGACTGTC 57.225 33.333 0.00 0.00 31.64 3.51
746 761 4.693283 CCATAACTAGATCTCGGCAACAA 58.307 43.478 0.00 0.00 0.00 2.83
812 827 6.238814 CCATGACGGTTAACAGTAAAAAGGTT 60.239 38.462 11.50 0.00 0.00 3.50
814 829 5.695818 CCATGACGGTTAACAGTAAAAAGG 58.304 41.667 11.50 5.12 0.00 3.11
836 851 7.588497 AAAAAGATGGGTCTAATAAGATGCC 57.412 36.000 0.00 0.00 33.30 4.40
848 863 5.471116 ACGGTTAACAGTAAAAAGATGGGTC 59.529 40.000 9.79 0.00 0.00 4.46
850 865 5.470777 TGACGGTTAACAGTAAAAAGATGGG 59.529 40.000 11.50 0.00 0.00 4.00
876 891 9.729023 CTGATAGATCAAATATCTTAGCTACCG 57.271 37.037 0.00 0.00 36.18 4.02
961 977 0.685097 ACTACCCAACTGCGACACAT 59.315 50.000 0.00 0.00 0.00 3.21
984 1001 1.153086 CATGGCTGGTGGGTAGAGC 60.153 63.158 0.00 0.00 0.00 4.09
1389 1406 3.939837 ATGCTCACGTGTCTGGCCG 62.940 63.158 16.51 0.00 0.00 6.13
1686 1796 9.436957 ACAGAAAACATACAATTAGACCACTAG 57.563 33.333 0.00 0.00 0.00 2.57
1857 2282 2.158475 ACAGGAAAAACTGCAGGGATGA 60.158 45.455 19.93 0.00 42.21 2.92
2028 2791 7.419204 AGTTAAATGATACTCAGAGCTACGAC 58.581 38.462 0.00 0.00 0.00 4.34
2269 3034 2.032528 TGGTCAAGCGCCTCAAGG 59.967 61.111 2.29 0.00 38.53 3.61
2308 3073 2.266055 CGGAGGGGCTTGTCTGAC 59.734 66.667 0.00 0.00 0.00 3.51
2326 3091 1.489560 AAACGTCCTGGAGGGGAAGG 61.490 60.000 19.56 0.00 38.78 3.46
2374 3139 0.532862 CAGTCTCAACACGGCCAACT 60.533 55.000 2.24 0.00 0.00 3.16
2497 3262 2.654912 GAAGCCGACGTTGTCACCG 61.655 63.158 1.30 0.00 32.09 4.94
2866 3631 0.883833 CCACAGTTTGCCTCATGTCC 59.116 55.000 0.00 0.00 0.00 4.02
3091 3857 5.201910 GTTTTGCCAAAAGCCGAAATTAAC 58.798 37.500 2.15 0.00 42.71 2.01
3092 3858 4.876107 TGTTTTGCCAAAAGCCGAAATTAA 59.124 33.333 2.15 0.00 42.71 1.40
3183 3949 0.944386 TTCAACGAGAAACAGCAGCC 59.056 50.000 0.00 0.00 32.05 4.85
3197 3963 4.600692 AAATACCACCAAAGGCTTCAAC 57.399 40.909 0.00 0.00 0.00 3.18
3215 3998 6.374333 ACAACCTGCTATTATCACGACAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
3339 4122 8.475331 TTTTTGCCAAAATTTTCGTAGTTACA 57.525 26.923 3.01 0.00 0.00 2.41
3400 4186 5.476599 TGAACTGCATTTTACTACATGGCTT 59.523 36.000 0.00 0.00 0.00 4.35
3424 4210 7.645340 GCGCATTAGTTCTGATTTGATTGTAAT 59.355 33.333 0.30 0.00 0.00 1.89
3540 4337 6.803642 ACTTTACGAAGTGTCCCTATACATC 58.196 40.000 0.00 0.00 44.27 3.06
3546 4343 3.890756 TGTGACTTTACGAAGTGTCCCTA 59.109 43.478 0.00 0.00 45.88 3.53
3547 4344 2.696707 TGTGACTTTACGAAGTGTCCCT 59.303 45.455 0.00 0.00 45.88 4.20
3548 4345 3.102052 TGTGACTTTACGAAGTGTCCC 57.898 47.619 0.00 0.00 45.88 4.46
3549 4346 3.120649 GCATGTGACTTTACGAAGTGTCC 60.121 47.826 0.00 0.00 45.88 4.02
3550 4347 3.493129 TGCATGTGACTTTACGAAGTGTC 59.507 43.478 0.00 0.00 45.88 3.67
3551 4348 3.462982 TGCATGTGACTTTACGAAGTGT 58.537 40.909 0.00 0.00 45.88 3.55
3552 4349 4.466567 TTGCATGTGACTTTACGAAGTG 57.533 40.909 0.00 0.00 45.88 3.16
3554 4351 5.688823 TCATTTGCATGTGACTTTACGAAG 58.311 37.500 0.00 0.00 38.87 3.79
3555 4352 5.468409 TCTCATTTGCATGTGACTTTACGAA 59.532 36.000 0.00 0.00 29.69 3.85
3556 4353 4.994217 TCTCATTTGCATGTGACTTTACGA 59.006 37.500 0.00 0.00 29.69 3.43
3557 4354 5.281693 TCTCATTTGCATGTGACTTTACG 57.718 39.130 0.00 0.00 29.69 3.18
3558 4355 5.961843 CGATCTCATTTGCATGTGACTTTAC 59.038 40.000 0.00 0.00 36.08 2.01
3559 4356 5.065090 CCGATCTCATTTGCATGTGACTTTA 59.935 40.000 0.00 0.00 36.08 1.85
3560 4357 4.142534 CCGATCTCATTTGCATGTGACTTT 60.143 41.667 0.00 0.00 36.08 2.66
3561 4358 3.376234 CCGATCTCATTTGCATGTGACTT 59.624 43.478 0.00 0.00 36.08 3.01
3562 4359 2.941064 CCGATCTCATTTGCATGTGACT 59.059 45.455 0.00 0.00 36.08 3.41
3563 4360 2.679837 ACCGATCTCATTTGCATGTGAC 59.320 45.455 0.00 0.00 36.08 3.67
3564 4361 2.679336 CACCGATCTCATTTGCATGTGA 59.321 45.455 0.00 0.00 37.33 3.58
3565 4362 2.421073 ACACCGATCTCATTTGCATGTG 59.579 45.455 0.00 0.00 0.00 3.21
3566 4363 2.715046 ACACCGATCTCATTTGCATGT 58.285 42.857 0.00 0.00 0.00 3.21
3567 4364 3.770263 AACACCGATCTCATTTGCATG 57.230 42.857 0.00 0.00 0.00 4.06
3568 4365 3.879295 CCTAACACCGATCTCATTTGCAT 59.121 43.478 0.00 0.00 0.00 3.96
3569 4366 3.270027 CCTAACACCGATCTCATTTGCA 58.730 45.455 0.00 0.00 0.00 4.08
3570 4367 2.614057 CCCTAACACCGATCTCATTTGC 59.386 50.000 0.00 0.00 0.00 3.68
3571 4368 3.873910 ACCCTAACACCGATCTCATTTG 58.126 45.455 0.00 0.00 0.00 2.32
3572 4369 4.261801 CAACCCTAACACCGATCTCATTT 58.738 43.478 0.00 0.00 0.00 2.32
3573 4370 3.370527 CCAACCCTAACACCGATCTCATT 60.371 47.826 0.00 0.00 0.00 2.57
3574 4371 2.170607 CCAACCCTAACACCGATCTCAT 59.829 50.000 0.00 0.00 0.00 2.90
3575 4372 1.553248 CCAACCCTAACACCGATCTCA 59.447 52.381 0.00 0.00 0.00 3.27
3576 4373 1.134491 CCCAACCCTAACACCGATCTC 60.134 57.143 0.00 0.00 0.00 2.75
3577 4374 0.909623 CCCAACCCTAACACCGATCT 59.090 55.000 0.00 0.00 0.00 2.75
3578 4375 0.107361 CCCCAACCCTAACACCGATC 60.107 60.000 0.00 0.00 0.00 3.69
3579 4376 1.568118 CCCCCAACCCTAACACCGAT 61.568 60.000 0.00 0.00 0.00 4.18
3580 4377 2.225596 CCCCCAACCCTAACACCGA 61.226 63.158 0.00 0.00 0.00 4.69
3581 4378 2.353573 CCCCCAACCCTAACACCG 59.646 66.667 0.00 0.00 0.00 4.94
3616 4413 1.503542 CGCTCCACATTTCACCAGC 59.496 57.895 0.00 0.00 0.00 4.85
3685 4558 8.778358 CCCTATAAGAATGTTTAGATCACTTGC 58.222 37.037 0.00 0.00 0.00 4.01
3702 4575 9.458727 CGGTCTTATACAGTATTCCCTATAAGA 57.541 37.037 0.00 0.00 36.50 2.10
3703 4576 9.240734 ACGGTCTTATACAGTATTCCCTATAAG 57.759 37.037 0.00 0.00 34.49 1.73
3704 4577 9.592196 AACGGTCTTATACAGTATTCCCTATAA 57.408 33.333 0.00 0.00 35.26 0.98
3709 4582 5.009010 TCGAACGGTCTTATACAGTATTCCC 59.991 44.000 0.00 0.00 35.26 3.97
3710 4583 6.064846 TCGAACGGTCTTATACAGTATTCC 57.935 41.667 0.00 0.00 35.26 3.01
3711 4584 7.699812 ACTTTCGAACGGTCTTATACAGTATTC 59.300 37.037 6.60 0.00 35.26 1.75
3712 4585 7.487189 CACTTTCGAACGGTCTTATACAGTATT 59.513 37.037 6.60 0.00 35.26 1.89
3713 4586 6.971184 CACTTTCGAACGGTCTTATACAGTAT 59.029 38.462 6.60 0.00 35.26 2.12
3715 4588 5.159209 CACTTTCGAACGGTCTTATACAGT 58.841 41.667 6.60 0.00 38.22 3.55
3716 4589 5.159209 ACACTTTCGAACGGTCTTATACAG 58.841 41.667 6.60 0.00 0.00 2.74
3719 4592 7.315142 ACATAACACTTTCGAACGGTCTTATA 58.685 34.615 6.60 0.00 0.00 0.98
3732 4610 4.447724 TGCTGAACTCGACATAACACTTTC 59.552 41.667 0.00 0.00 0.00 2.62
3740 4618 4.104696 TCGAATTGCTGAACTCGACATA 57.895 40.909 0.00 0.00 35.52 2.29
3902 4781 4.093011 ACTCAGTTAGATGAACCTGCTCT 58.907 43.478 0.00 0.00 39.02 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.