Multiple sequence alignment - TraesCS4D01G196900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G196900 chr4D 100.000 7087 0 0 1 7087 341527748 341520662 0.000000e+00 13088.0
1 TraesCS4D01G196900 chr4D 91.165 249 16 6 1996 2241 51076346 51076101 4.100000e-87 333.0
2 TraesCS4D01G196900 chr4D 87.023 262 34 0 1 262 399730775 399731036 5.380000e-76 296.0
3 TraesCS4D01G196900 chr4D 88.115 244 27 2 2001 2243 394301850 394302092 8.990000e-74 289.0
4 TraesCS4D01G196900 chr4D 91.220 205 13 4 3741 3942 355283523 355283725 2.520000e-69 274.0
5 TraesCS4D01G196900 chr4D 100.000 59 0 0 3653 3711 341524038 341523980 7.520000e-20 110.0
6 TraesCS4D01G196900 chr4D 100.000 59 0 0 3711 3769 341524096 341524038 7.520000e-20 110.0
7 TraesCS4D01G196900 chr4B 93.815 3751 144 43 1 3711 423363797 423360095 0.000000e+00 5561.0
8 TraesCS4D01G196900 chr4B 97.328 1684 36 6 3711 5388 423360153 423358473 0.000000e+00 2852.0
9 TraesCS4D01G196900 chr4B 87.226 822 52 25 5605 6405 423358480 423357691 0.000000e+00 887.0
10 TraesCS4D01G196900 chr4B 90.514 253 19 5 1993 2244 447455471 447455223 5.300000e-86 329.0
11 TraesCS4D01G196900 chr4A 94.170 2144 84 16 1 2135 125377441 125379552 0.000000e+00 3229.0
12 TraesCS4D01G196900 chr4A 92.522 1364 71 9 5486 6835 125384461 125385807 0.000000e+00 1925.0
13 TraesCS4D01G196900 chr4A 90.854 995 56 23 3950 4922 125382789 125383770 0.000000e+00 1301.0
14 TraesCS4D01G196900 chr4A 92.900 831 29 10 2553 3359 125379980 125380804 0.000000e+00 1181.0
15 TraesCS4D01G196900 chr4A 94.444 432 24 0 4919 5350 125383842 125384273 0.000000e+00 665.0
16 TraesCS4D01G196900 chr4A 92.368 380 18 2 2174 2542 125379545 125379924 1.350000e-146 531.0
17 TraesCS4D01G196900 chr4A 85.676 377 30 8 3358 3711 125382423 125382798 6.710000e-100 375.0
18 TraesCS4D01G196900 chr4A 88.889 108 11 1 5378 5484 125384269 125384376 1.600000e-26 132.0
19 TraesCS4D01G196900 chr4A 91.045 67 6 0 275 341 24955246 24955312 2.720000e-14 91.6
20 TraesCS4D01G196900 chr2B 90.083 242 23 1 2003 2244 636775615 636775375 5.340000e-81 313.0
21 TraesCS4D01G196900 chr2B 86.452 155 17 3 528 680 653612934 653612782 4.400000e-37 167.0
22 TraesCS4D01G196900 chr7D 87.786 262 32 0 1 262 630507606 630507867 2.480000e-79 307.0
23 TraesCS4D01G196900 chr7D 98.824 85 1 0 6838 6922 543724925 543725009 1.230000e-32 152.0
24 TraesCS4D01G196900 chr7D 87.500 64 4 3 393 454 439997153 439997214 3.550000e-08 71.3
25 TraesCS4D01G196900 chr6B 87.692 260 31 1 3 262 626461792 626462050 1.160000e-77 302.0
26 TraesCS4D01G196900 chr1B 87.072 263 33 1 1 262 573580204 573579942 5.380000e-76 296.0
27 TraesCS4D01G196900 chr1B 92.500 200 8 6 3760 3956 246770895 246770700 5.410000e-71 279.0
28 TraesCS4D01G196900 chr3A 87.023 262 32 1 1 262 25577602 25577343 1.930000e-75 294.0
29 TraesCS4D01G196900 chr3A 96.045 177 7 0 3772 3948 57159278 57159454 8.990000e-74 289.0
30 TraesCS4D01G196900 chr3A 87.755 245 27 3 2000 2242 63180532 63180775 4.180000e-72 283.0
31 TraesCS4D01G196900 chr3A 87.952 83 10 0 272 354 530941263 530941345 1.630000e-16 99.0
32 TraesCS4D01G196900 chr5A 86.641 262 33 2 1 262 547505182 547504923 8.990000e-74 289.0
33 TraesCS4D01G196900 chr5A 87.109 256 27 6 1993 2246 631868082 631868333 1.160000e-72 285.0
34 TraesCS4D01G196900 chr5A 87.838 74 8 1 389 461 624799186 624799113 1.270000e-12 86.1
35 TraesCS4D01G196900 chr1D 86.822 258 34 0 1 258 396886237 396886494 8.990000e-74 289.0
36 TraesCS4D01G196900 chr1D 85.333 75 11 0 272 346 229179410 229179484 2.120000e-10 78.7
37 TraesCS4D01G196900 chr1D 83.784 74 12 0 394 467 470222429 470222502 3.550000e-08 71.3
38 TraesCS4D01G196900 chrUn 95.556 180 7 1 3775 3953 112608251 112608430 3.240000e-73 287.0
39 TraesCS4D01G196900 chr5D 96.023 176 7 0 3777 3952 319691588 319691413 3.240000e-73 287.0
40 TraesCS4D01G196900 chr5D 86.957 253 26 7 1993 2244 494082931 494083177 1.950000e-70 278.0
41 TraesCS4D01G196900 chr5D 89.041 146 14 2 529 673 424074735 424074879 5.650000e-41 180.0
42 TraesCS4D01G196900 chr5D 85.714 77 10 1 391 467 317345951 317346026 5.890000e-11 80.5
43 TraesCS4D01G196900 chr5D 100.000 35 0 0 315 349 507558611 507558645 1.650000e-06 65.8
44 TraesCS4D01G196900 chr2A 95.556 180 7 1 3763 3942 133338600 133338778 3.240000e-73 287.0
45 TraesCS4D01G196900 chr2A 95.420 131 5 1 6957 7087 572694286 572694157 2.590000e-49 207.0
46 TraesCS4D01G196900 chr2A 85.714 70 9 1 398 467 101832915 101832847 9.860000e-09 73.1
47 TraesCS4D01G196900 chr2A 83.117 77 11 2 392 467 69311212 69311137 1.280000e-07 69.4
48 TraesCS4D01G196900 chr7A 95.028 181 7 1 3771 3949 426576415 426576595 4.180000e-72 283.0
49 TraesCS4D01G196900 chr7A 84.270 89 7 5 6838 6922 625635636 625635721 5.890000e-11 80.5
50 TraesCS4D01G196900 chr7A 79.825 114 16 5 6724 6836 439488219 439488326 7.620000e-10 76.8
51 TraesCS4D01G196900 chr3B 95.480 177 8 0 3777 3953 106897761 106897585 4.180000e-72 283.0
52 TraesCS4D01G196900 chr3B 89.157 83 9 0 272 354 547128095 547128013 3.500000e-18 104.0
53 TraesCS4D01G196900 chr3B 86.111 72 10 0 392 463 331237176 331237247 2.120000e-10 78.7
54 TraesCS4D01G196900 chr3D 92.366 131 10 0 6957 7087 592992345 592992475 3.380000e-43 187.0
55 TraesCS4D01G196900 chr3D 87.952 83 10 0 272 354 419929838 419929756 1.630000e-16 99.0
56 TraesCS4D01G196900 chr6A 91.111 135 11 1 6954 7087 553190049 553190183 1.570000e-41 182.0
57 TraesCS4D01G196900 chr6A 90.411 73 5 2 392 463 585347995 585348066 2.100000e-15 95.3
58 TraesCS4D01G196900 chr7B 84.932 146 19 3 535 679 93313774 93313631 2.060000e-30 145.0
59 TraesCS4D01G196900 chr7B 85.246 61 6 3 6777 6836 384029215 384029273 7.680000e-05 60.2
60 TraesCS4D01G196900 chr6D 97.222 72 2 0 7006 7077 369505357 369505428 9.650000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G196900 chr4D 341520662 341527748 7086 True 4436.000 13088 100.000000 1 7087 3 chr4D.!!$R2 7086
1 TraesCS4D01G196900 chr4B 423357691 423363797 6106 True 3100.000 5561 92.789667 1 6405 3 chr4B.!!$R2 6404
2 TraesCS4D01G196900 chr4A 125377441 125385807 8366 False 1167.375 3229 91.477875 1 6835 8 chr4A.!!$F2 6834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.033504 ACTTGAAGAAGAAGCGCCGA 59.966 50.000 2.29 0.00 32.98 5.54 F
855 894 0.179059 CCAACCAGGCAAACCAAACC 60.179 55.000 0.00 0.00 39.06 3.27 F
1648 1692 1.204941 CTGGGGGTTCGAACTAGAGTG 59.795 57.143 26.32 10.06 0.00 3.51 F
2991 3116 0.101759 GTATTGCACCATGCTGCTGG 59.898 55.000 13.92 14.07 45.31 4.85 F
3734 5502 0.773644 ACCACATGCCTGTTCCTTCT 59.226 50.000 0.00 0.00 31.62 2.85 F
3740 5508 0.850100 TGCCTGTTCCTTCTTTGGGA 59.150 50.000 0.00 0.00 0.00 4.37 F
5539 7494 0.599204 CCGCTATTTGTCCGGCGTAT 60.599 55.000 6.01 0.00 45.11 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2076 0.885196 TCGGGTTGCCATGCTTAAAC 59.115 50.000 0.00 0.00 0.00 2.01 R
2390 2447 1.819288 CACCGAGACCTGACACTACAT 59.181 52.381 0.00 0.00 0.00 2.29 R
3359 3484 3.070015 ACGGTGATATCAGCATCATGACA 59.930 43.478 28.98 0.00 44.00 3.58 R
3910 5679 1.842562 AGTGCATAGAAGCTCCCACAT 59.157 47.619 0.00 0.00 34.99 3.21 R
5526 7481 0.519519 CAAGCAATACGCCGGACAAA 59.480 50.000 5.05 0.00 44.04 2.83 R
5682 7638 0.985490 GCTCCTGGAACCATCCTCCT 60.985 60.000 0.00 0.00 46.70 3.69 R
6913 8893 0.034767 ATGTCACATCAGGCTGGGTG 60.035 55.000 24.81 24.81 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 4.508662 GATGAACGAACTTGAGGAGGATT 58.491 43.478 0.00 0.00 0.00 3.01
189 190 0.033504 ACTTGAAGAAGAAGCGCCGA 59.966 50.000 2.29 0.00 32.98 5.54
262 264 3.215151 CGAGGCACTAGGAATACTCTCA 58.785 50.000 0.00 0.00 41.55 3.27
269 271 5.068460 GCACTAGGAATACTCTCACTGTCAT 59.932 44.000 0.00 0.00 0.00 3.06
282 284 1.482621 CTGTCATCGGCGAATCCACG 61.483 60.000 15.93 0.00 34.01 4.94
284 286 2.967076 CATCGGCGAATCCACGGG 60.967 66.667 15.93 0.00 34.01 5.28
699 738 2.176369 CGGACGTTAGCATGCATTTTG 58.824 47.619 21.98 7.92 0.00 2.44
709 748 4.167483 GCATTTTGCGGTGCGAAT 57.833 50.000 0.00 0.00 31.52 3.34
712 751 0.984109 CATTTTGCGGTGCGAATGAC 59.016 50.000 10.37 0.00 37.08 3.06
851 890 0.616111 ACAACCAACCAGGCAAACCA 60.616 50.000 0.00 0.00 43.14 3.67
852 891 0.539051 CAACCAACCAGGCAAACCAA 59.461 50.000 0.00 0.00 43.14 3.67
853 892 1.065854 CAACCAACCAGGCAAACCAAA 60.066 47.619 0.00 0.00 43.14 3.28
854 893 0.539518 ACCAACCAGGCAAACCAAAC 59.460 50.000 0.00 0.00 43.14 2.93
855 894 0.179059 CCAACCAGGCAAACCAAACC 60.179 55.000 0.00 0.00 39.06 3.27
897 937 3.612247 AACCCACCAGCGCTGCTAG 62.612 63.158 31.96 20.41 36.40 3.42
901 941 2.681778 ACCAGCGCTGCTAGTCCT 60.682 61.111 31.96 4.22 36.40 3.85
1648 1692 1.204941 CTGGGGGTTCGAACTAGAGTG 59.795 57.143 26.32 10.06 0.00 3.51
1774 1819 2.487746 TGTGGGATCCATGCCTACTA 57.512 50.000 15.23 0.00 39.30 1.82
1806 1851 1.751351 TGGGCAAACATTTGTTGACGA 59.249 42.857 6.24 0.00 40.24 4.20
1938 1984 4.160065 TCTCCAATTCGTACCGGACAATTA 59.840 41.667 9.46 0.00 0.00 1.40
1992 2038 7.039313 AGCTTCCGTTGTTTCTCTAAAAATT 57.961 32.000 0.00 0.00 0.00 1.82
2072 2118 4.048504 ACGTTTTTCATGGCAACTTTAGC 58.951 39.130 0.00 0.00 37.61 3.09
2105 2151 3.818180 TGGCAAACATGGCAATTTTCTT 58.182 36.364 2.31 0.00 41.49 2.52
2106 2152 4.205587 TGGCAAACATGGCAATTTTCTTT 58.794 34.783 2.31 0.00 41.49 2.52
2107 2153 4.643784 TGGCAAACATGGCAATTTTCTTTT 59.356 33.333 2.31 0.00 41.49 2.27
2154 2200 6.530181 AGTTGCTGTGTTTTAACAACTAAAGC 59.470 34.615 4.97 3.52 46.66 3.51
2159 2205 4.439776 GTGTTTTAACAACTAAAGCTGCCG 59.560 41.667 0.00 0.00 41.21 5.69
2249 2298 6.120220 GGGATTTATCGGGGTCCTAAATATG 58.880 44.000 0.00 0.00 0.00 1.78
2283 2332 9.626045 CCATGGTCTCTTTTAAAATTCTGTTAC 57.374 33.333 2.57 0.00 0.00 2.50
2971 3096 4.199310 TGTTACATTGCTTCTGGGCTATC 58.801 43.478 0.00 0.00 0.00 2.08
2979 3104 2.806745 GCTTCTGGGCTATCGTATTGCA 60.807 50.000 0.00 0.00 32.56 4.08
2991 3116 0.101759 GTATTGCACCATGCTGCTGG 59.898 55.000 13.92 14.07 45.31 4.85
3000 3125 1.066002 CCATGCTGCTGGTTTTATCCG 59.934 52.381 0.00 0.00 0.00 4.18
3003 3128 2.235016 TGCTGCTGGTTTTATCCGTTT 58.765 42.857 0.00 0.00 0.00 3.60
3318 3443 4.378874 GCAGTGTTCTGTTCATAAGCCTTC 60.379 45.833 0.00 0.00 43.05 3.46
3319 3444 4.999950 CAGTGTTCTGTTCATAAGCCTTCT 59.000 41.667 0.00 0.00 36.97 2.85
3391 5136 4.740695 GCTGATATCACCGTTAGTCAGTTC 59.259 45.833 0.00 0.00 36.39 3.01
3593 5361 7.159372 ACCAAACATCGTCTAATACTGTCTTT 58.841 34.615 0.00 0.00 0.00 2.52
3688 5456 5.336770 GCCTGTTCCTTCTTTGGGATTTTAG 60.337 44.000 0.00 0.00 32.41 1.85
3689 5457 5.775195 CCTGTTCCTTCTTTGGGATTTTAGT 59.225 40.000 0.00 0.00 32.41 2.24
3690 5458 6.267699 CCTGTTCCTTCTTTGGGATTTTAGTT 59.732 38.462 0.00 0.00 32.41 2.24
3691 5459 7.202001 CCTGTTCCTTCTTTGGGATTTTAGTTT 60.202 37.037 0.00 0.00 32.41 2.66
3692 5460 8.084985 TGTTCCTTCTTTGGGATTTTAGTTTT 57.915 30.769 0.00 0.00 32.41 2.43
3693 5461 7.984617 TGTTCCTTCTTTGGGATTTTAGTTTTG 59.015 33.333 0.00 0.00 32.41 2.44
3694 5462 7.669089 TCCTTCTTTGGGATTTTAGTTTTGT 57.331 32.000 0.00 0.00 0.00 2.83
3695 5463 7.722363 TCCTTCTTTGGGATTTTAGTTTTGTC 58.278 34.615 0.00 0.00 0.00 3.18
3696 5464 7.343316 TCCTTCTTTGGGATTTTAGTTTTGTCA 59.657 33.333 0.00 0.00 0.00 3.58
3697 5465 7.984617 CCTTCTTTGGGATTTTAGTTTTGTCAA 59.015 33.333 0.00 0.00 0.00 3.18
3698 5466 8.940768 TTCTTTGGGATTTTAGTTTTGTCAAG 57.059 30.769 0.00 0.00 0.00 3.02
3699 5467 8.299990 TCTTTGGGATTTTAGTTTTGTCAAGA 57.700 30.769 0.00 0.00 0.00 3.02
3700 5468 8.194769 TCTTTGGGATTTTAGTTTTGTCAAGAC 58.805 33.333 0.00 0.00 0.00 3.01
3701 5469 7.411486 TTGGGATTTTAGTTTTGTCAAGACA 57.589 32.000 8.79 0.00 39.98 3.41
3702 5470 7.595819 TGGGATTTTAGTTTTGTCAAGACAT 57.404 32.000 8.79 0.00 41.52 3.06
3703 5471 8.698973 TGGGATTTTAGTTTTGTCAAGACATA 57.301 30.769 8.79 0.00 41.52 2.29
3704 5472 8.792633 TGGGATTTTAGTTTTGTCAAGACATAG 58.207 33.333 8.79 0.00 41.52 2.23
3705 5473 8.793592 GGGATTTTAGTTTTGTCAAGACATAGT 58.206 33.333 8.79 1.84 41.52 2.12
3713 5481 9.429359 AGTTTTGTCAAGACATAGTAATGAGAG 57.571 33.333 8.79 0.00 41.52 3.20
3714 5482 7.834068 TTTGTCAAGACATAGTAATGAGAGC 57.166 36.000 3.43 0.00 41.52 4.09
3715 5483 6.530019 TGTCAAGACATAGTAATGAGAGCA 57.470 37.500 0.00 0.00 36.21 4.26
3716 5484 6.333416 TGTCAAGACATAGTAATGAGAGCAC 58.667 40.000 0.00 0.00 36.21 4.40
3717 5485 5.751028 GTCAAGACATAGTAATGAGAGCACC 59.249 44.000 0.00 0.00 36.54 5.01
3718 5486 5.422012 TCAAGACATAGTAATGAGAGCACCA 59.578 40.000 0.00 0.00 36.54 4.17
3719 5487 5.269505 AGACATAGTAATGAGAGCACCAC 57.730 43.478 0.00 0.00 36.54 4.16
3720 5488 4.711846 AGACATAGTAATGAGAGCACCACA 59.288 41.667 0.00 0.00 36.54 4.17
3721 5489 5.365025 AGACATAGTAATGAGAGCACCACAT 59.635 40.000 0.00 0.00 36.54 3.21
3722 5490 5.363101 ACATAGTAATGAGAGCACCACATG 58.637 41.667 0.00 0.00 36.54 3.21
3723 5491 4.212847 CATAGTAATGAGAGCACCACATGC 59.787 45.833 0.00 0.00 44.61 4.06
3724 5492 6.764276 CATAGTAATGAGAGCACCACATGCC 61.764 48.000 0.00 0.00 45.05 4.40
3725 5493 8.859393 CATAGTAATGAGAGCACCACATGCCT 62.859 46.154 0.00 0.00 45.05 4.75
3731 5499 4.828409 CACCACATGCCTGTTCCT 57.172 55.556 0.00 0.00 31.62 3.36
3732 5500 3.040965 CACCACATGCCTGTTCCTT 57.959 52.632 0.00 0.00 31.62 3.36
3733 5501 0.883833 CACCACATGCCTGTTCCTTC 59.116 55.000 0.00 0.00 31.62 3.46
3734 5502 0.773644 ACCACATGCCTGTTCCTTCT 59.226 50.000 0.00 0.00 31.62 2.85
3735 5503 1.145738 ACCACATGCCTGTTCCTTCTT 59.854 47.619 0.00 0.00 31.62 2.52
3736 5504 2.242043 CCACATGCCTGTTCCTTCTTT 58.758 47.619 0.00 0.00 31.62 2.52
3737 5505 2.029649 CCACATGCCTGTTCCTTCTTTG 60.030 50.000 0.00 0.00 31.62 2.77
3738 5506 2.029649 CACATGCCTGTTCCTTCTTTGG 60.030 50.000 0.00 0.00 31.62 3.28
3739 5507 1.547372 CATGCCTGTTCCTTCTTTGGG 59.453 52.381 0.00 0.00 0.00 4.12
3740 5508 0.850100 TGCCTGTTCCTTCTTTGGGA 59.150 50.000 0.00 0.00 0.00 4.37
3741 5509 1.428912 TGCCTGTTCCTTCTTTGGGAT 59.571 47.619 0.00 0.00 32.41 3.85
3742 5510 2.158325 TGCCTGTTCCTTCTTTGGGATT 60.158 45.455 0.00 0.00 32.41 3.01
3743 5511 2.899900 GCCTGTTCCTTCTTTGGGATTT 59.100 45.455 0.00 0.00 32.41 2.17
3744 5512 3.324846 GCCTGTTCCTTCTTTGGGATTTT 59.675 43.478 0.00 0.00 32.41 1.82
3745 5513 4.526650 GCCTGTTCCTTCTTTGGGATTTTA 59.473 41.667 0.00 0.00 32.41 1.52
3877 5646 2.154462 CACTTTGCAGGGGTAAGACTG 58.846 52.381 2.16 0.00 37.76 3.51
3890 5659 5.012871 GGGGTAAGACTGGGTTCCTATAATC 59.987 48.000 0.00 0.00 0.00 1.75
3910 5679 2.877383 TCCCCAGACCCCACCCTA 60.877 66.667 0.00 0.00 0.00 3.53
3961 5730 9.132923 CTGTCCTGTCCTTTATAGTAATGACTA 57.867 37.037 0.00 0.00 42.41 2.59
4128 5897 1.202639 TCTTGTCGGTGACACATTGCT 60.203 47.619 8.08 0.00 42.60 3.91
4346 6115 6.128172 CCTGAGAGTTGGTTATCATTGTCAAC 60.128 42.308 0.00 0.00 38.26 3.18
4378 6147 5.804639 AGGTATGCTGTTATCAGTGTTTCA 58.195 37.500 2.85 0.00 43.05 2.69
4690 6476 9.328845 ACATTTGAATAAAATTGCAACTCAACT 57.671 25.926 0.00 0.00 36.28 3.16
4708 6494 7.560368 ACTCAACTCTCCTTATCTAACCAATG 58.440 38.462 0.00 0.00 0.00 2.82
4724 6510 9.090103 TCTAACCAATGTAAGACCCTATAGATG 57.910 37.037 0.00 0.00 0.00 2.90
4846 6632 7.825270 TGTTATTTTGTCCTTGTCATACCGTAT 59.175 33.333 0.00 0.00 0.00 3.06
4847 6633 6.677781 ATTTTGTCCTTGTCATACCGTATG 57.322 37.500 11.73 11.73 37.52 2.39
4848 6634 3.173668 TGTCCTTGTCATACCGTATGC 57.826 47.619 12.94 9.14 36.14 3.14
4849 6635 2.498078 TGTCCTTGTCATACCGTATGCA 59.502 45.455 12.94 11.27 36.14 3.96
4850 6636 3.123804 GTCCTTGTCATACCGTATGCAG 58.876 50.000 12.94 8.75 36.14 4.41
4851 6637 1.867233 CCTTGTCATACCGTATGCAGC 59.133 52.381 12.94 7.02 36.14 5.25
4852 6638 2.549926 CTTGTCATACCGTATGCAGCA 58.450 47.619 12.94 0.00 36.14 4.41
4853 6639 2.908688 TGTCATACCGTATGCAGCAT 57.091 45.000 13.73 13.73 36.14 3.79
4984 6852 8.664079 ACTAATCCTTTATGCATTACTCAGGAT 58.336 33.333 3.54 8.04 40.69 3.24
5015 6883 3.327757 ACTGGAAGCTCCTACATTCAACA 59.672 43.478 0.00 0.00 37.46 3.33
5122 6990 1.425066 TGGGGTTTCAGCTTGTCAGAT 59.575 47.619 0.00 0.00 0.00 2.90
5167 7035 8.930846 AGGATCAGGGAGTATTTGAATTTATG 57.069 34.615 0.00 0.00 0.00 1.90
5266 7134 8.299570 ACTCTGTTTGCTAGAAATAATTGTTGG 58.700 33.333 0.00 0.00 0.00 3.77
5380 7248 7.990886 TGACTTGTGGTTAGTACAAAAGAGAAT 59.009 33.333 2.62 0.00 36.79 2.40
5381 7249 8.154649 ACTTGTGGTTAGTACAAAAGAGAATG 57.845 34.615 2.62 0.00 36.79 2.67
5382 7250 7.990886 ACTTGTGGTTAGTACAAAAGAGAATGA 59.009 33.333 2.62 0.00 36.79 2.57
5398 7266 7.865706 AGAGAATGAAACACACTAGTTTTGT 57.134 32.000 0.00 0.00 41.48 2.83
5410 7278 7.652105 ACACACTAGTTTTGTCATGTACACTAG 59.348 37.037 0.00 4.58 38.00 2.57
5411 7279 7.652105 CACACTAGTTTTGTCATGTACACTAGT 59.348 37.037 10.94 10.94 42.15 2.57
5422 7290 4.864704 TGTACACTAGTGCATGACAGAA 57.135 40.909 22.90 0.00 35.34 3.02
5425 7293 6.230472 TGTACACTAGTGCATGACAGAATTT 58.770 36.000 22.90 0.96 35.34 1.82
5428 7296 4.696877 CACTAGTGCATGACAGAATTTGGA 59.303 41.667 10.54 0.00 0.00 3.53
5439 7308 3.195825 ACAGAATTTGGAGTAGGAGGTCG 59.804 47.826 0.00 0.00 0.00 4.79
5453 7322 2.017049 GAGGTCGGGTGAATCAAATGG 58.983 52.381 0.00 0.00 0.00 3.16
5454 7323 1.354368 AGGTCGGGTGAATCAAATGGT 59.646 47.619 0.00 0.00 0.00 3.55
5499 7451 9.552114 GCATTATTATACAGAAATCATCACTGC 57.448 33.333 0.00 0.00 35.38 4.40
5526 7481 5.989777 GTCATTGGACATAGTAAACCGCTAT 59.010 40.000 0.00 0.00 43.73 2.97
5534 7489 2.624636 AGTAAACCGCTATTTGTCCGG 58.375 47.619 0.00 0.00 46.97 5.14
5535 7490 1.063027 GTAAACCGCTATTTGTCCGGC 59.937 52.381 0.00 0.00 45.58 6.13
5536 7491 1.641123 AAACCGCTATTTGTCCGGCG 61.641 55.000 0.00 0.00 45.58 6.46
5539 7494 0.599204 CCGCTATTTGTCCGGCGTAT 60.599 55.000 6.01 0.00 45.11 3.06
5552 7507 1.004610 CGGCGTATTGCTTGATGAGTG 60.005 52.381 0.00 0.00 45.43 3.51
5554 7509 2.874701 GGCGTATTGCTTGATGAGTGAT 59.125 45.455 0.00 0.00 45.43 3.06
5585 7540 1.824230 GGCTACATGTTTTGCATCCCA 59.176 47.619 2.30 0.00 35.19 4.37
5720 7676 1.517242 CCACTGTCCACAAGCTTCTC 58.483 55.000 0.00 0.00 0.00 2.87
5816 7772 2.507944 CAGGGCCCTCTCAATCCG 59.492 66.667 25.77 3.68 0.00 4.18
5909 7868 0.622665 AGGAGCAGGAAACATCAGGG 59.377 55.000 0.00 0.00 0.00 4.45
6035 7994 1.651240 CCGCCAGTGGAGAAATGCTG 61.651 60.000 15.20 0.00 0.00 4.41
6036 7995 0.674581 CGCCAGTGGAGAAATGCTGA 60.675 55.000 15.20 0.00 0.00 4.26
6037 7996 0.807496 GCCAGTGGAGAAATGCTGAC 59.193 55.000 15.20 0.00 0.00 3.51
6039 7998 1.081892 CAGTGGAGAAATGCTGACCG 58.918 55.000 0.00 0.00 0.00 4.79
6040 7999 0.976641 AGTGGAGAAATGCTGACCGA 59.023 50.000 0.00 0.00 0.00 4.69
6041 8000 1.556911 AGTGGAGAAATGCTGACCGAT 59.443 47.619 0.00 0.00 0.00 4.18
6042 8001 2.026822 AGTGGAGAAATGCTGACCGATT 60.027 45.455 0.00 0.00 0.00 3.34
6043 8002 3.197766 AGTGGAGAAATGCTGACCGATTA 59.802 43.478 0.00 0.00 0.00 1.75
6044 8003 3.557595 GTGGAGAAATGCTGACCGATTAG 59.442 47.826 0.00 0.00 0.00 1.73
6046 8005 2.545946 GAGAAATGCTGACCGATTAGGC 59.454 50.000 0.00 0.00 46.52 3.93
6047 8006 1.261619 GAAATGCTGACCGATTAGGCG 59.738 52.381 0.00 0.00 46.52 5.52
6090 8049 0.759346 AAACGAAGCTCTGGGTCTGT 59.241 50.000 0.00 0.00 0.00 3.41
6097 8057 1.978473 CTCTGGGTCTGTGTCTGGG 59.022 63.158 0.00 0.00 0.00 4.45
6165 8126 1.333619 GTCTTGAAAGGTCTGCGCAAA 59.666 47.619 13.05 0.00 0.00 3.68
6212 8174 3.628032 AGCGTTCTCTCTCGATATTGACA 59.372 43.478 0.00 0.00 0.00 3.58
6222 8184 5.154222 TCTCGATATTGACATTCGATTCGG 58.846 41.667 6.18 0.00 40.69 4.30
6355 8332 0.034670 GTGCCAGCCTTCCTGATTCT 60.035 55.000 0.00 0.00 44.64 2.40
6368 8345 6.429385 CCTTCCTGATTCTGGAAATATAGCAC 59.571 42.308 21.20 0.00 40.10 4.40
6410 8387 4.605640 TGCCTTTTCCCATTTTCTGAAG 57.394 40.909 0.00 0.00 0.00 3.02
6414 8391 6.101997 GCCTTTTCCCATTTTCTGAAGTATG 58.898 40.000 7.30 7.30 0.00 2.39
6416 8393 5.659440 TTTCCCATTTTCTGAAGTATGCC 57.341 39.130 8.32 0.00 0.00 4.40
6425 8402 8.902806 CATTTTCTGAAGTATGCCATAGGTTAA 58.097 33.333 0.00 0.00 0.00 2.01
6448 8425 7.856145 AATGATCTGGAAAACACTAGACATC 57.144 36.000 0.00 0.00 30.79 3.06
6459 8436 8.856490 AAAACACTAGACATCACAATGAAAAC 57.144 30.769 0.00 0.00 36.67 2.43
6460 8437 7.566760 AACACTAGACATCACAATGAAAACA 57.433 32.000 0.00 0.00 36.67 2.83
6495 8472 7.702772 CACAGAACGAGCAGTATTAGATTTACT 59.297 37.037 0.00 0.00 0.00 2.24
6532 8509 4.410099 TGCCATCTTCTTCCTTCAATTGT 58.590 39.130 5.13 0.00 0.00 2.71
6615 8592 0.905357 AGAACTATTGCCCACTCGCT 59.095 50.000 0.00 0.00 0.00 4.93
6625 8602 1.078759 CCCACTCGCTGCTAGAAACG 61.079 60.000 8.28 0.00 0.00 3.60
6639 8616 7.011109 GCTGCTAGAAACGAAATCTAATAACCA 59.989 37.037 0.00 0.00 0.00 3.67
6671 8648 3.003689 CGTTATTTGAGGCATCATCCCAC 59.996 47.826 0.03 0.00 34.73 4.61
6681 8658 2.743938 CATCATCCCACGTAGTACAGC 58.256 52.381 0.38 0.00 41.61 4.40
6682 8659 1.108776 TCATCCCACGTAGTACAGCC 58.891 55.000 0.38 0.00 41.61 4.85
6713 8690 4.265073 CTTCACCATAGAAAGGGACCAAG 58.735 47.826 0.00 0.00 0.00 3.61
6721 8698 2.234908 AGAAAGGGACCAAGAGACATCG 59.765 50.000 0.00 0.00 0.00 3.84
6746 8723 2.086869 AGAAATCGGTTCATGCCACTG 58.913 47.619 0.00 0.00 38.86 3.66
6761 8738 2.808543 GCCACTGAACAACTCGAAAGAT 59.191 45.455 0.00 0.00 40.84 2.40
6772 8749 5.760253 ACAACTCGAAAGATGAAGTCAATGT 59.240 36.000 0.00 0.00 40.84 2.71
6795 8772 2.271800 CCGCACCAAGAGACATCTAAC 58.728 52.381 0.00 0.00 33.45 2.34
6802 8782 5.119279 CACCAAGAGACATCTAACTGTTTCG 59.881 44.000 0.00 0.00 35.88 3.46
6835 8815 5.934625 ACACACCAATTGTCAAGATCTAGAC 59.065 40.000 4.43 0.00 35.67 2.59
6836 8816 6.169094 CACACCAATTGTCAAGATCTAGACT 58.831 40.000 4.43 0.00 35.67 3.24
6837 8817 6.312426 CACACCAATTGTCAAGATCTAGACTC 59.688 42.308 4.43 0.00 35.67 3.36
6838 8818 5.814705 CACCAATTGTCAAGATCTAGACTCC 59.185 44.000 4.43 0.00 35.81 3.85
6839 8819 5.046529 CCAATTGTCAAGATCTAGACTCCG 58.953 45.833 4.43 0.00 35.81 4.63
6840 8820 5.163509 CCAATTGTCAAGATCTAGACTCCGA 60.164 44.000 4.43 0.00 35.81 4.55
6841 8821 4.966965 TTGTCAAGATCTAGACTCCGAC 57.033 45.455 0.00 0.90 35.81 4.79
6842 8822 3.951663 TGTCAAGATCTAGACTCCGACA 58.048 45.455 11.04 11.04 35.81 4.35
6843 8823 3.942115 TGTCAAGATCTAGACTCCGACAG 59.058 47.826 11.04 0.00 35.81 3.51
6844 8824 2.946329 TCAAGATCTAGACTCCGACAGC 59.054 50.000 0.00 0.00 0.00 4.40
6845 8825 1.588674 AGATCTAGACTCCGACAGCG 58.411 55.000 0.00 0.00 37.24 5.18
6846 8826 1.139256 AGATCTAGACTCCGACAGCGA 59.861 52.381 0.00 0.00 40.82 4.93
6847 8827 1.529438 GATCTAGACTCCGACAGCGAG 59.471 57.143 0.00 0.00 40.82 5.03
6848 8828 0.462225 TCTAGACTCCGACAGCGAGG 60.462 60.000 0.00 0.00 40.82 4.63
6849 8829 2.054140 CTAGACTCCGACAGCGAGGC 62.054 65.000 0.00 0.00 40.82 4.70
6850 8830 2.814913 TAGACTCCGACAGCGAGGCA 62.815 60.000 0.00 0.00 40.82 4.75
6851 8831 3.691744 GACTCCGACAGCGAGGCAG 62.692 68.421 0.00 0.00 40.82 4.85
6852 8832 3.443925 CTCCGACAGCGAGGCAGA 61.444 66.667 0.00 0.00 40.82 4.26
6853 8833 2.989253 TCCGACAGCGAGGCAGAA 60.989 61.111 0.00 0.00 40.82 3.02
6854 8834 2.507992 CCGACAGCGAGGCAGAAG 60.508 66.667 0.00 0.00 40.82 2.85
6855 8835 3.184683 CGACAGCGAGGCAGAAGC 61.185 66.667 0.00 0.00 40.82 3.86
6856 8836 2.047844 GACAGCGAGGCAGAAGCA 60.048 61.111 0.00 0.00 44.61 3.91
6857 8837 1.669115 GACAGCGAGGCAGAAGCAA 60.669 57.895 0.00 0.00 44.61 3.91
6858 8838 1.905922 GACAGCGAGGCAGAAGCAAC 61.906 60.000 0.00 0.00 44.61 4.17
6859 8839 2.359230 AGCGAGGCAGAAGCAACC 60.359 61.111 0.00 0.00 44.61 3.77
6860 8840 3.435186 GCGAGGCAGAAGCAACCC 61.435 66.667 0.00 0.00 44.61 4.11
6861 8841 3.121030 CGAGGCAGAAGCAACCCG 61.121 66.667 0.00 0.00 44.61 5.28
6862 8842 2.347490 GAGGCAGAAGCAACCCGA 59.653 61.111 0.00 0.00 44.61 5.14
6863 8843 1.743252 GAGGCAGAAGCAACCCGAG 60.743 63.158 0.00 0.00 44.61 4.63
6864 8844 3.435186 GGCAGAAGCAACCCGAGC 61.435 66.667 0.00 0.00 44.61 5.03
6865 8845 3.435186 GCAGAAGCAACCCGAGCC 61.435 66.667 0.00 0.00 41.58 4.70
6866 8846 2.747855 CAGAAGCAACCCGAGCCC 60.748 66.667 0.00 0.00 0.00 5.19
6867 8847 4.035102 AGAAGCAACCCGAGCCCC 62.035 66.667 0.00 0.00 0.00 5.80
6868 8848 4.344865 GAAGCAACCCGAGCCCCA 62.345 66.667 0.00 0.00 0.00 4.96
6869 8849 4.351054 AAGCAACCCGAGCCCCAG 62.351 66.667 0.00 0.00 0.00 4.45
6884 8864 4.387343 CAGCCCCAGCCCACCATT 62.387 66.667 0.00 0.00 41.25 3.16
6885 8865 4.066139 AGCCCCAGCCCACCATTC 62.066 66.667 0.00 0.00 41.25 2.67
6887 8867 4.463788 CCCCAGCCCACCATTCCC 62.464 72.222 0.00 0.00 0.00 3.97
6888 8868 3.350163 CCCAGCCCACCATTCCCT 61.350 66.667 0.00 0.00 0.00 4.20
6889 8869 2.276740 CCAGCCCACCATTCCCTC 59.723 66.667 0.00 0.00 0.00 4.30
6890 8870 2.311854 CCAGCCCACCATTCCCTCT 61.312 63.158 0.00 0.00 0.00 3.69
6891 8871 0.988145 CCAGCCCACCATTCCCTCTA 60.988 60.000 0.00 0.00 0.00 2.43
6892 8872 0.471617 CAGCCCACCATTCCCTCTAG 59.528 60.000 0.00 0.00 0.00 2.43
6893 8873 1.149401 GCCCACCATTCCCTCTAGC 59.851 63.158 0.00 0.00 0.00 3.42
6894 8874 1.839894 CCCACCATTCCCTCTAGCC 59.160 63.158 0.00 0.00 0.00 3.93
6895 8875 1.709994 CCCACCATTCCCTCTAGCCC 61.710 65.000 0.00 0.00 0.00 5.19
6896 8876 0.988145 CCACCATTCCCTCTAGCCCA 60.988 60.000 0.00 0.00 0.00 5.36
6897 8877 0.918983 CACCATTCCCTCTAGCCCAA 59.081 55.000 0.00 0.00 0.00 4.12
6898 8878 1.284785 CACCATTCCCTCTAGCCCAAA 59.715 52.381 0.00 0.00 0.00 3.28
6899 8879 2.000048 ACCATTCCCTCTAGCCCAAAA 59.000 47.619 0.00 0.00 0.00 2.44
6900 8880 2.291605 ACCATTCCCTCTAGCCCAAAAC 60.292 50.000 0.00 0.00 0.00 2.43
6901 8881 2.379005 CATTCCCTCTAGCCCAAAACC 58.621 52.381 0.00 0.00 0.00 3.27
6902 8882 1.755200 TTCCCTCTAGCCCAAAACCT 58.245 50.000 0.00 0.00 0.00 3.50
6903 8883 1.286248 TCCCTCTAGCCCAAAACCTC 58.714 55.000 0.00 0.00 0.00 3.85
6904 8884 1.203440 TCCCTCTAGCCCAAAACCTCT 60.203 52.381 0.00 0.00 0.00 3.69
6905 8885 1.636003 CCCTCTAGCCCAAAACCTCTT 59.364 52.381 0.00 0.00 0.00 2.85
6906 8886 2.356227 CCCTCTAGCCCAAAACCTCTTC 60.356 54.545 0.00 0.00 0.00 2.87
6907 8887 2.356227 CCTCTAGCCCAAAACCTCTTCC 60.356 54.545 0.00 0.00 0.00 3.46
6908 8888 2.305927 CTCTAGCCCAAAACCTCTTCCA 59.694 50.000 0.00 0.00 0.00 3.53
6909 8889 2.039879 TCTAGCCCAAAACCTCTTCCAC 59.960 50.000 0.00 0.00 0.00 4.02
6910 8890 0.178961 AGCCCAAAACCTCTTCCACC 60.179 55.000 0.00 0.00 0.00 4.61
6911 8891 0.178961 GCCCAAAACCTCTTCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
6912 8892 1.757764 GCCCAAAACCTCTTCCACCTT 60.758 52.381 0.00 0.00 0.00 3.50
6913 8893 2.239400 CCCAAAACCTCTTCCACCTTC 58.761 52.381 0.00 0.00 0.00 3.46
6914 8894 2.424234 CCCAAAACCTCTTCCACCTTCA 60.424 50.000 0.00 0.00 0.00 3.02
6915 8895 2.623416 CCAAAACCTCTTCCACCTTCAC 59.377 50.000 0.00 0.00 0.00 3.18
6916 8896 2.623416 CAAAACCTCTTCCACCTTCACC 59.377 50.000 0.00 0.00 0.00 4.02
6917 8897 0.771755 AACCTCTTCCACCTTCACCC 59.228 55.000 0.00 0.00 0.00 4.61
6918 8898 0.401395 ACCTCTTCCACCTTCACCCA 60.401 55.000 0.00 0.00 0.00 4.51
6919 8899 0.326264 CCTCTTCCACCTTCACCCAG 59.674 60.000 0.00 0.00 0.00 4.45
6920 8900 0.322008 CTCTTCCACCTTCACCCAGC 60.322 60.000 0.00 0.00 0.00 4.85
6921 8901 1.303643 CTTCCACCTTCACCCAGCC 60.304 63.158 0.00 0.00 0.00 4.85
6922 8902 1.774217 TTCCACCTTCACCCAGCCT 60.774 57.895 0.00 0.00 0.00 4.58
6923 8903 2.034687 CCACCTTCACCCAGCCTG 59.965 66.667 0.00 0.00 0.00 4.85
6924 8904 2.528818 CCACCTTCACCCAGCCTGA 61.529 63.158 0.00 0.00 0.00 3.86
6925 8905 1.687612 CACCTTCACCCAGCCTGAT 59.312 57.895 0.00 0.00 0.00 2.90
6926 8906 0.679002 CACCTTCACCCAGCCTGATG 60.679 60.000 0.00 0.00 0.00 3.07
6927 8907 1.136329 ACCTTCACCCAGCCTGATGT 61.136 55.000 0.00 0.00 0.00 3.06
6928 8908 0.679002 CCTTCACCCAGCCTGATGTG 60.679 60.000 7.72 7.72 0.00 3.21
6929 8909 0.325933 CTTCACCCAGCCTGATGTGA 59.674 55.000 11.48 11.48 36.04 3.58
6930 8910 0.036732 TTCACCCAGCCTGATGTGAC 59.963 55.000 14.16 0.00 37.46 3.67
6931 8911 1.126948 TCACCCAGCCTGATGTGACA 61.127 55.000 11.48 0.00 33.09 3.58
6932 8912 0.034767 CACCCAGCCTGATGTGACAT 60.035 55.000 0.00 0.00 0.00 3.06
6933 8913 0.034767 ACCCAGCCTGATGTGACATG 60.035 55.000 1.23 0.00 0.00 3.21
6934 8914 1.381928 CCCAGCCTGATGTGACATGC 61.382 60.000 1.23 0.00 0.00 4.06
6935 8915 1.381928 CCAGCCTGATGTGACATGCC 61.382 60.000 1.23 0.00 33.21 4.40
6936 8916 0.393944 CAGCCTGATGTGACATGCCT 60.394 55.000 1.23 0.00 33.21 4.75
6937 8917 0.393944 AGCCTGATGTGACATGCCTG 60.394 55.000 1.23 0.00 33.21 4.85
6938 8918 0.393402 GCCTGATGTGACATGCCTGA 60.393 55.000 1.23 0.00 0.00 3.86
6939 8919 1.664873 CCTGATGTGACATGCCTGAG 58.335 55.000 1.23 0.00 0.00 3.35
6940 8920 1.208776 CCTGATGTGACATGCCTGAGA 59.791 52.381 1.23 0.00 0.00 3.27
6941 8921 2.158798 CCTGATGTGACATGCCTGAGAT 60.159 50.000 1.23 0.00 0.00 2.75
6942 8922 3.542648 CTGATGTGACATGCCTGAGATT 58.457 45.455 1.23 0.00 0.00 2.40
6943 8923 3.538591 TGATGTGACATGCCTGAGATTC 58.461 45.455 1.23 0.00 0.00 2.52
6944 8924 2.014335 TGTGACATGCCTGAGATTCG 57.986 50.000 0.00 0.00 0.00 3.34
6945 8925 1.276138 TGTGACATGCCTGAGATTCGT 59.724 47.619 0.00 0.00 0.00 3.85
6946 8926 2.289631 TGTGACATGCCTGAGATTCGTT 60.290 45.455 0.00 0.00 0.00 3.85
6947 8927 2.349886 GTGACATGCCTGAGATTCGTTC 59.650 50.000 0.00 0.00 0.00 3.95
6948 8928 1.936547 GACATGCCTGAGATTCGTTCC 59.063 52.381 0.00 0.00 0.00 3.62
6949 8929 0.933097 CATGCCTGAGATTCGTTCCG 59.067 55.000 0.00 0.00 0.00 4.30
6950 8930 0.179073 ATGCCTGAGATTCGTTCCGG 60.179 55.000 0.00 0.00 0.00 5.14
6951 8931 1.218316 GCCTGAGATTCGTTCCGGT 59.782 57.895 0.00 0.00 0.00 5.28
6952 8932 0.458669 GCCTGAGATTCGTTCCGGTA 59.541 55.000 0.00 0.00 0.00 4.02
6953 8933 1.801765 GCCTGAGATTCGTTCCGGTAC 60.802 57.143 0.00 0.00 0.00 3.34
6954 8934 1.202382 CCTGAGATTCGTTCCGGTACC 60.202 57.143 5.55 0.16 0.00 3.34
6955 8935 0.819582 TGAGATTCGTTCCGGTACCC 59.180 55.000 6.25 0.00 0.00 3.69
6973 8953 4.018609 GGATGACGACGCATGAGG 57.981 61.111 9.05 0.00 0.00 3.86
6974 8954 2.240500 GGATGACGACGCATGAGGC 61.241 63.158 9.05 0.00 39.90 4.70
7010 8990 4.309950 GTGGGCGGTTCACCTCGT 62.310 66.667 0.00 0.00 0.00 4.18
7011 8991 3.998672 TGGGCGGTTCACCTCGTC 61.999 66.667 0.00 0.00 0.00 4.20
7016 8996 4.047059 GGTTCACCTCGTCGCCGA 62.047 66.667 0.00 0.00 41.73 5.54
7017 8997 2.804090 GTTCACCTCGTCGCCGAC 60.804 66.667 7.29 7.29 38.40 4.79
7018 8998 4.047059 TTCACCTCGTCGCCGACC 62.047 66.667 12.26 0.00 38.40 4.79
7020 9000 3.129502 CACCTCGTCGCCGACCTA 61.130 66.667 12.26 0.00 38.40 3.08
7021 9001 2.124403 ACCTCGTCGCCGACCTAT 60.124 61.111 12.26 0.00 38.40 2.57
7022 9002 2.185494 ACCTCGTCGCCGACCTATC 61.185 63.158 12.26 0.00 38.40 2.08
7023 9003 2.638154 CTCGTCGCCGACCTATCC 59.362 66.667 12.26 0.00 38.40 2.59
7024 9004 2.124612 TCGTCGCCGACCTATCCA 60.125 61.111 12.26 0.00 38.40 3.41
7025 9005 2.025727 CGTCGCCGACCTATCCAC 59.974 66.667 12.26 0.00 35.63 4.02
7026 9006 2.025727 GTCGCCGACCTATCCACG 59.974 66.667 5.81 0.00 0.00 4.94
7027 9007 3.896133 TCGCCGACCTATCCACGC 61.896 66.667 0.00 0.00 0.00 5.34
7028 9008 4.944372 CGCCGACCTATCCACGCC 62.944 72.222 0.00 0.00 0.00 5.68
7029 9009 4.944372 GCCGACCTATCCACGCCG 62.944 72.222 0.00 0.00 0.00 6.46
7030 9010 4.280494 CCGACCTATCCACGCCGG 62.280 72.222 0.00 0.00 0.00 6.13
7031 9011 4.944372 CGACCTATCCACGCCGGC 62.944 72.222 19.07 19.07 33.14 6.13
7032 9012 4.944372 GACCTATCCACGCCGGCG 62.944 72.222 44.88 44.88 46.03 6.46
7042 9022 4.957684 CGCCGGCGCTGATGATCT 62.958 66.667 38.48 0.00 0.00 2.75
7043 9023 2.590007 GCCGGCGCTGATGATCTT 60.590 61.111 20.25 0.00 0.00 2.40
7044 9024 2.602322 GCCGGCGCTGATGATCTTC 61.602 63.158 20.25 1.67 0.00 2.87
7045 9025 1.227350 CCGGCGCTGATGATCTTCA 60.227 57.895 20.25 10.59 0.00 3.02
7046 9026 0.811219 CCGGCGCTGATGATCTTCAA 60.811 55.000 20.25 0.00 0.00 2.69
7047 9027 0.580578 CGGCGCTGATGATCTTCAAG 59.419 55.000 11.90 10.02 0.00 3.02
7048 9028 0.307146 GGCGCTGATGATCTTCAAGC 59.693 55.000 20.85 20.85 0.00 4.01
7049 9029 0.042361 GCGCTGATGATCTTCAAGCG 60.042 55.000 29.49 29.49 41.67 4.68
7050 9030 1.564207 CGCTGATGATCTTCAAGCGA 58.436 50.000 29.75 7.24 41.48 4.93
7051 9031 1.521840 CGCTGATGATCTTCAAGCGAG 59.478 52.381 29.75 15.26 41.48 5.03
7052 9032 1.865970 GCTGATGATCTTCAAGCGAGG 59.134 52.381 11.98 1.77 0.00 4.63
7053 9033 1.865970 CTGATGATCTTCAAGCGAGGC 59.134 52.381 11.98 0.00 0.00 4.70
7054 9034 0.857935 GATGATCTTCAAGCGAGGCG 59.142 55.000 3.80 0.00 0.00 5.52
7055 9035 0.176680 ATGATCTTCAAGCGAGGCGT 59.823 50.000 0.00 0.00 0.00 5.68
7056 9036 0.037326 TGATCTTCAAGCGAGGCGTT 60.037 50.000 0.00 0.00 0.00 4.84
7057 9037 0.647925 GATCTTCAAGCGAGGCGTTC 59.352 55.000 0.00 0.00 0.00 3.95
7058 9038 0.247736 ATCTTCAAGCGAGGCGTTCT 59.752 50.000 0.00 0.00 0.00 3.01
7059 9039 0.667487 TCTTCAAGCGAGGCGTTCTG 60.667 55.000 0.00 0.00 0.00 3.02
7060 9040 2.233007 CTTCAAGCGAGGCGTTCTGC 62.233 60.000 0.00 0.00 45.38 4.26
7061 9041 2.715532 TTCAAGCGAGGCGTTCTGCT 62.716 55.000 0.00 0.00 45.43 4.24
7062 9042 2.433318 AAGCGAGGCGTTCTGCTC 60.433 61.111 2.86 0.00 45.43 4.26
7063 9043 3.941657 AAGCGAGGCGTTCTGCTCC 62.942 63.158 2.86 0.00 45.43 4.70
7071 9051 4.681978 GTTCTGCTCCGGCGTGGT 62.682 66.667 6.01 0.00 42.25 4.16
7072 9052 4.680237 TTCTGCTCCGGCGTGGTG 62.680 66.667 6.01 0.00 42.25 4.17
7074 9054 4.457496 CTGCTCCGGCGTGGTGAT 62.457 66.667 6.01 0.00 42.25 3.06
7075 9055 3.958147 CTGCTCCGGCGTGGTGATT 62.958 63.158 6.01 0.00 42.25 2.57
7076 9056 3.195698 GCTCCGGCGTGGTGATTC 61.196 66.667 6.01 0.00 39.52 2.52
7077 9057 2.511600 CTCCGGCGTGGTGATTCC 60.512 66.667 6.01 0.00 39.52 3.01
7078 9058 4.090588 TCCGGCGTGGTGATTCCC 62.091 66.667 6.01 0.00 39.52 3.97
7080 9060 4.096003 CGGCGTGGTGATTCCCCT 62.096 66.667 0.00 0.00 34.77 4.79
7081 9061 2.438434 GGCGTGGTGATTCCCCTG 60.438 66.667 0.00 0.00 34.77 4.45
7082 9062 2.351276 GCGTGGTGATTCCCCTGT 59.649 61.111 0.00 0.00 34.77 4.00
7083 9063 2.040544 GCGTGGTGATTCCCCTGTG 61.041 63.158 0.00 0.00 34.77 3.66
7084 9064 2.040544 CGTGGTGATTCCCCTGTGC 61.041 63.158 0.00 0.00 34.77 4.57
7085 9065 1.380302 GTGGTGATTCCCCTGTGCT 59.620 57.895 0.00 0.00 34.77 4.40
7086 9066 0.962356 GTGGTGATTCCCCTGTGCTG 60.962 60.000 0.00 0.00 34.77 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.611714 GGCGAGGTTAGGGTTTCTCA 59.388 55.000 0.00 0.00 0.00 3.27
128 129 1.890489 TCCTCAAGTTCGTTCATCGGA 59.110 47.619 0.00 0.00 40.32 4.55
166 167 1.136113 GCGCTTCTTCTTCAAGTCAGC 60.136 52.381 0.00 0.00 35.38 4.26
258 260 0.817654 ATTCGCCGATGACAGTGAGA 59.182 50.000 0.00 0.00 0.00 3.27
262 264 0.460284 GTGGATTCGCCGATGACAGT 60.460 55.000 0.00 0.00 40.66 3.55
290 292 1.676678 CTTCCCTTCGATCTCCGGCA 61.677 60.000 0.00 0.00 39.14 5.69
292 294 1.067821 CTTCTTCCCTTCGATCTCCGG 59.932 57.143 0.00 0.00 39.14 5.14
376 405 2.045926 GGGGCACGTGATTCTGCT 60.046 61.111 22.23 0.00 33.63 4.24
851 890 3.223589 GGCGTGCTTGGGTGGTTT 61.224 61.111 0.00 0.00 0.00 3.27
897 937 2.685100 CGAAACTGGGAACTGTAGGAC 58.315 52.381 0.00 0.00 42.21 3.85
901 941 1.001633 GAGGCGAAACTGGGAACTGTA 59.998 52.381 0.00 0.00 42.21 2.74
1774 1819 3.574952 TGCCCAAGCACACTAGGT 58.425 55.556 0.00 0.00 46.52 3.08
1806 1851 4.037565 GGTGTACTGCTTTGCTTTTTACCT 59.962 41.667 0.00 0.00 0.00 3.08
2030 2076 0.885196 TCGGGTTGCCATGCTTAAAC 59.115 50.000 0.00 0.00 0.00 2.01
2072 2118 2.250939 TTTGCCAACCTCGCGTGAG 61.251 57.895 19.15 19.15 42.18 3.51
2135 2181 5.344884 GGCAGCTTTAGTTGTTAAAACACA 58.655 37.500 0.00 0.00 38.92 3.72
2136 2182 4.439776 CGGCAGCTTTAGTTGTTAAAACAC 59.560 41.667 0.00 0.00 38.92 3.32
2197 2243 6.990349 ACGTTCGGATTTTAATCATATCACCT 59.010 34.615 4.97 0.00 37.15 4.00
2249 2298 6.877611 TTAAAAGAGACCATGGTGACTTTC 57.122 37.500 29.67 17.92 32.93 2.62
2283 2332 5.389859 TCATTAGGTTGACTTGGCAAATG 57.610 39.130 0.00 0.00 0.00 2.32
2390 2447 1.819288 CACCGAGACCTGACACTACAT 59.181 52.381 0.00 0.00 0.00 2.29
2991 3116 5.769367 AGAAAGGAGCAAAACGGATAAAAC 58.231 37.500 0.00 0.00 0.00 2.43
3000 3125 3.758554 TCCTGCATAGAAAGGAGCAAAAC 59.241 43.478 0.00 0.00 37.68 2.43
3003 3128 3.719268 TTCCTGCATAGAAAGGAGCAA 57.281 42.857 0.00 0.00 43.40 3.91
3318 3443 6.490721 GGGGAGGATACATATACGGAATAGAG 59.509 46.154 0.00 0.00 41.41 2.43
3319 3444 6.161705 AGGGGAGGATACATATACGGAATAGA 59.838 42.308 0.00 0.00 41.41 1.98
3359 3484 3.070015 ACGGTGATATCAGCATCATGACA 59.930 43.478 28.98 0.00 44.00 3.58
3607 5375 9.484326 GTTGTTTTGCTTAACGAATGAAAATTT 57.516 25.926 0.00 0.00 0.00 1.82
3688 5456 8.171840 GCTCTCATTACTATGTCTTGACAAAAC 58.828 37.037 7.57 0.00 33.34 2.43
3689 5457 7.877612 TGCTCTCATTACTATGTCTTGACAAAA 59.122 33.333 7.57 1.59 33.34 2.44
3690 5458 7.331934 GTGCTCTCATTACTATGTCTTGACAAA 59.668 37.037 7.57 0.00 33.34 2.83
3691 5459 6.813649 GTGCTCTCATTACTATGTCTTGACAA 59.186 38.462 7.57 0.00 33.34 3.18
3692 5460 6.333416 GTGCTCTCATTACTATGTCTTGACA 58.667 40.000 5.89 5.89 33.34 3.58
3693 5461 5.751028 GGTGCTCTCATTACTATGTCTTGAC 59.249 44.000 0.00 0.00 33.34 3.18
3694 5462 5.422012 TGGTGCTCTCATTACTATGTCTTGA 59.578 40.000 0.00 0.00 33.34 3.02
3695 5463 5.521735 GTGGTGCTCTCATTACTATGTCTTG 59.478 44.000 0.00 0.00 33.34 3.02
3696 5464 5.187772 TGTGGTGCTCTCATTACTATGTCTT 59.812 40.000 0.00 0.00 33.34 3.01
3697 5465 4.711846 TGTGGTGCTCTCATTACTATGTCT 59.288 41.667 0.00 0.00 33.34 3.41
3698 5466 5.011090 TGTGGTGCTCTCATTACTATGTC 57.989 43.478 0.00 0.00 33.34 3.06
3699 5467 5.363101 CATGTGGTGCTCTCATTACTATGT 58.637 41.667 0.00 0.00 33.34 2.29
3700 5468 5.919272 CATGTGGTGCTCTCATTACTATG 57.081 43.478 0.00 0.00 0.00 2.23
3714 5482 0.883833 GAAGGAACAGGCATGTGGTG 59.116 55.000 4.03 0.00 40.39 4.17
3715 5483 0.773644 AGAAGGAACAGGCATGTGGT 59.226 50.000 4.03 0.00 40.39 4.16
3716 5484 1.915141 AAGAAGGAACAGGCATGTGG 58.085 50.000 4.03 0.00 40.39 4.17
3717 5485 2.029649 CCAAAGAAGGAACAGGCATGTG 60.030 50.000 4.03 0.00 40.39 3.21
3718 5486 2.242043 CCAAAGAAGGAACAGGCATGT 58.758 47.619 0.00 0.00 43.15 3.21
3719 5487 1.547372 CCCAAAGAAGGAACAGGCATG 59.453 52.381 0.00 0.00 0.00 4.06
3720 5488 1.428912 TCCCAAAGAAGGAACAGGCAT 59.571 47.619 0.00 0.00 0.00 4.40
3721 5489 0.850100 TCCCAAAGAAGGAACAGGCA 59.150 50.000 0.00 0.00 0.00 4.75
3722 5490 2.222227 ATCCCAAAGAAGGAACAGGC 57.778 50.000 0.00 0.00 36.85 4.85
3723 5491 5.775195 ACTAAAATCCCAAAGAAGGAACAGG 59.225 40.000 0.00 0.00 36.85 4.00
3724 5492 6.901081 ACTAAAATCCCAAAGAAGGAACAG 57.099 37.500 0.00 0.00 36.85 3.16
3725 5493 7.669089 AAACTAAAATCCCAAAGAAGGAACA 57.331 32.000 0.00 0.00 36.85 3.18
3726 5494 7.985184 ACAAAACTAAAATCCCAAAGAAGGAAC 59.015 33.333 0.00 0.00 36.85 3.62
3727 5495 8.084985 ACAAAACTAAAATCCCAAAGAAGGAA 57.915 30.769 0.00 0.00 36.85 3.36
3728 5496 7.343316 TGACAAAACTAAAATCCCAAAGAAGGA 59.657 33.333 0.00 0.00 37.93 3.36
3729 5497 7.496747 TGACAAAACTAAAATCCCAAAGAAGG 58.503 34.615 0.00 0.00 0.00 3.46
3730 5498 8.940768 TTGACAAAACTAAAATCCCAAAGAAG 57.059 30.769 0.00 0.00 0.00 2.85
3731 5499 8.754080 TCTTGACAAAACTAAAATCCCAAAGAA 58.246 29.630 0.00 0.00 0.00 2.52
3732 5500 8.194769 GTCTTGACAAAACTAAAATCCCAAAGA 58.805 33.333 0.00 0.00 0.00 2.52
3733 5501 7.978975 TGTCTTGACAAAACTAAAATCCCAAAG 59.021 33.333 0.44 0.00 0.00 2.77
3734 5502 7.841956 TGTCTTGACAAAACTAAAATCCCAAA 58.158 30.769 0.44 0.00 0.00 3.28
3735 5503 7.411486 TGTCTTGACAAAACTAAAATCCCAA 57.589 32.000 0.44 0.00 0.00 4.12
3736 5504 7.595819 ATGTCTTGACAAAACTAAAATCCCA 57.404 32.000 7.57 0.00 0.00 4.37
3737 5505 8.793592 ACTATGTCTTGACAAAACTAAAATCCC 58.206 33.333 7.57 0.00 0.00 3.85
3877 5646 2.276391 GGGGAGGGATTATAGGAACCC 58.724 57.143 0.00 0.00 42.36 4.11
3910 5679 1.842562 AGTGCATAGAAGCTCCCACAT 59.157 47.619 0.00 0.00 34.99 3.21
4095 5864 9.740239 TGTCACCGACAAGAATTATATAGTAAC 57.260 33.333 0.00 0.00 39.78 2.50
4128 5897 2.284754 TTGCTGCACCTGGATTTACA 57.715 45.000 0.00 0.00 0.00 2.41
4346 6115 2.403252 ACAGCATACCTTCTTTCCCG 57.597 50.000 0.00 0.00 0.00 5.14
4394 6163 7.648142 TGAAGATTGTACAGAACATTTTGTCC 58.352 34.615 0.00 0.00 38.10 4.02
4510 6279 2.086869 ACAAATCCTGCATCTGGTTCG 58.913 47.619 0.00 0.00 0.00 3.95
4690 6476 7.070821 GGGTCTTACATTGGTTAGATAAGGAGA 59.929 40.741 0.00 0.00 35.38 3.71
4708 6494 4.873746 TGCTGCATCTATAGGGTCTTAC 57.126 45.455 0.00 0.00 0.00 2.34
4724 6510 6.863126 TCAAGAACTAAAGCTAAAAATGCTGC 59.137 34.615 0.00 0.00 41.03 5.25
4846 6632 3.485394 TCCTTTGTGAAACTATGCTGCA 58.515 40.909 4.13 4.13 38.04 4.41
4847 6633 4.708726 ATCCTTTGTGAAACTATGCTGC 57.291 40.909 0.00 0.00 38.04 5.25
4848 6634 5.355071 TGCTATCCTTTGTGAAACTATGCTG 59.645 40.000 0.00 0.00 38.04 4.41
4849 6635 5.500234 TGCTATCCTTTGTGAAACTATGCT 58.500 37.500 0.00 0.00 38.04 3.79
4850 6636 5.818136 TGCTATCCTTTGTGAAACTATGC 57.182 39.130 0.00 0.00 38.04 3.14
4851 6637 7.144722 TGTTGCTATCCTTTGTGAAACTATG 57.855 36.000 0.00 0.00 38.04 2.23
4852 6638 7.944729 ATGTTGCTATCCTTTGTGAAACTAT 57.055 32.000 0.00 0.00 38.04 2.12
4853 6639 7.665559 AGAATGTTGCTATCCTTTGTGAAACTA 59.334 33.333 0.00 0.00 38.04 2.24
4984 6852 7.069877 TGTAGGAGCTTCCAGTAAAGTTTTA 57.930 36.000 0.00 0.00 39.61 1.52
5015 6883 3.259123 GCAACATCCTTTTCCCAGAATGT 59.741 43.478 0.00 0.00 0.00 2.71
5122 6990 7.830697 TGATCCTCTTTCTTCTGCATTTGAATA 59.169 33.333 0.00 0.00 0.00 1.75
5167 7035 2.298729 AGCCTGACTGAACAGAGACTTC 59.701 50.000 8.87 0.00 39.94 3.01
5266 7134 6.586082 ACGAATATGCCAACTCAATTCAAAAC 59.414 34.615 0.00 0.00 0.00 2.43
5380 7248 6.751514 ACATGACAAAACTAGTGTGTTTCA 57.248 33.333 12.43 8.27 38.98 2.69
5381 7249 7.638683 GTGTACATGACAAAACTAGTGTGTTTC 59.361 37.037 12.43 3.72 40.66 2.78
5382 7250 7.335924 AGTGTACATGACAAAACTAGTGTGTTT 59.664 33.333 12.43 0.22 40.66 2.83
5410 7278 4.095483 CCTACTCCAAATTCTGTCATGCAC 59.905 45.833 0.00 0.00 0.00 4.57
5411 7279 4.019411 TCCTACTCCAAATTCTGTCATGCA 60.019 41.667 0.00 0.00 0.00 3.96
5417 7285 3.195825 CGACCTCCTACTCCAAATTCTGT 59.804 47.826 0.00 0.00 0.00 3.41
5422 7290 1.273666 ACCCGACCTCCTACTCCAAAT 60.274 52.381 0.00 0.00 0.00 2.32
5425 7293 1.000019 CACCCGACCTCCTACTCCA 60.000 63.158 0.00 0.00 0.00 3.86
5428 7296 1.006758 TGATTCACCCGACCTCCTACT 59.993 52.381 0.00 0.00 0.00 2.57
5439 7308 9.349713 TCAATTATACTACCATTTGATTCACCC 57.650 33.333 0.00 0.00 0.00 4.61
5526 7481 0.519519 CAAGCAATACGCCGGACAAA 59.480 50.000 5.05 0.00 44.04 2.83
5534 7489 5.852738 ATATCACTCATCAAGCAATACGC 57.147 39.130 0.00 0.00 42.91 4.42
5535 7490 7.148672 GGAGAATATCACTCATCAAGCAATACG 60.149 40.741 10.58 0.00 36.26 3.06
5536 7491 7.877097 AGGAGAATATCACTCATCAAGCAATAC 59.123 37.037 10.58 0.00 36.26 1.89
5539 7494 6.126968 TGAGGAGAATATCACTCATCAAGCAA 60.127 38.462 18.21 2.88 46.80 3.91
5552 7507 5.736951 ACATGTAGCCTGAGGAGAATATC 57.263 43.478 0.65 0.00 0.00 1.63
5554 7509 5.957771 AAACATGTAGCCTGAGGAGAATA 57.042 39.130 0.65 0.00 0.00 1.75
5585 7540 4.104383 TCAGGAAGAACTCAGCCAAATT 57.896 40.909 0.00 0.00 0.00 1.82
5668 7624 1.371183 CTCCTGGCAAACTCGGTCA 59.629 57.895 0.00 0.00 0.00 4.02
5682 7638 0.985490 GCTCCTGGAACCATCCTCCT 60.985 60.000 0.00 0.00 46.70 3.69
6039 7998 2.030628 GCTCTACTCAGTCCGCCTAATC 60.031 54.545 0.00 0.00 0.00 1.75
6040 7999 1.957877 GCTCTACTCAGTCCGCCTAAT 59.042 52.381 0.00 0.00 0.00 1.73
6041 8000 1.390565 GCTCTACTCAGTCCGCCTAA 58.609 55.000 0.00 0.00 0.00 2.69
6042 8001 0.814410 CGCTCTACTCAGTCCGCCTA 60.814 60.000 0.00 0.00 0.00 3.93
6043 8002 2.115911 CGCTCTACTCAGTCCGCCT 61.116 63.158 0.00 0.00 0.00 5.52
6044 8003 2.325666 GACGCTCTACTCAGTCCGCC 62.326 65.000 0.00 0.00 0.00 6.13
6045 8004 1.062845 GACGCTCTACTCAGTCCGC 59.937 63.158 0.00 0.00 0.00 5.54
6046 8005 1.082679 TCGACGCTCTACTCAGTCCG 61.083 60.000 0.00 0.00 0.00 4.79
6047 8006 0.653636 CTCGACGCTCTACTCAGTCC 59.346 60.000 0.00 0.00 0.00 3.85
6212 8174 0.035439 ACAGGCCAACCGAATCGAAT 60.035 50.000 5.01 0.00 42.76 3.34
6222 8184 3.712881 GCGTCGTCACAGGCCAAC 61.713 66.667 5.01 0.00 0.00 3.77
6368 8345 4.855388 GCAACACATTACAGATGAAGCAAG 59.145 41.667 0.00 0.00 0.00 4.01
6376 8353 4.220602 GGGAAAAGGCAACACATTACAGAT 59.779 41.667 0.00 0.00 41.41 2.90
6410 8387 6.711277 TCCAGATCATTAACCTATGGCATAC 58.289 40.000 2.32 0.00 0.00 2.39
6414 8391 6.321181 TGTTTTCCAGATCATTAACCTATGGC 59.679 38.462 0.00 0.00 0.00 4.40
6416 8393 8.511604 AGTGTTTTCCAGATCATTAACCTATG 57.488 34.615 0.00 0.00 0.00 2.23
6425 8402 6.820656 GTGATGTCTAGTGTTTTCCAGATCAT 59.179 38.462 0.00 0.00 0.00 2.45
6448 8425 7.914871 TCTGTGTCTTGTTATGTTTTCATTGTG 59.085 33.333 0.00 0.00 41.25 3.33
6459 8436 3.740832 TGCTCGTTCTGTGTCTTGTTATG 59.259 43.478 0.00 0.00 0.00 1.90
6460 8437 3.990092 TGCTCGTTCTGTGTCTTGTTAT 58.010 40.909 0.00 0.00 0.00 1.89
6495 8472 4.331968 AGATGGCAGGTATTGTTTTCGAA 58.668 39.130 0.00 0.00 0.00 3.71
6587 8564 2.424956 GGGCAATAGTTCTCAAAGCCTG 59.575 50.000 0.00 0.00 40.40 4.85
6615 8592 8.780846 TTGGTTATTAGATTTCGTTTCTAGCA 57.219 30.769 0.00 0.00 0.00 3.49
6639 8616 6.325919 TGCCTCAAATAACGTTTCTTCATT 57.674 33.333 5.91 0.00 0.00 2.57
6654 8631 0.327924 ACGTGGGATGATGCCTCAAA 59.672 50.000 4.19 0.00 34.37 2.69
6655 8632 1.138859 CTACGTGGGATGATGCCTCAA 59.861 52.381 4.19 0.00 34.37 3.02
6671 8648 1.933853 GGATTGCAAGGCTGTACTACG 59.066 52.381 4.94 0.00 0.00 3.51
6681 8658 3.889815 TCTATGGTGAAGGATTGCAAGG 58.110 45.455 4.94 0.00 0.00 3.61
6682 8659 5.163581 CCTTTCTATGGTGAAGGATTGCAAG 60.164 44.000 4.94 0.00 0.00 4.01
6721 8698 3.378112 TGGCATGAACCGATTTCTTCATC 59.622 43.478 0.00 0.00 35.37 2.92
6735 8712 1.872952 CGAGTTGTTCAGTGGCATGAA 59.127 47.619 0.00 7.85 36.85 2.57
6736 8713 1.069978 TCGAGTTGTTCAGTGGCATGA 59.930 47.619 0.00 0.00 0.00 3.07
6746 8723 5.907197 TGACTTCATCTTTCGAGTTGTTC 57.093 39.130 0.00 0.00 0.00 3.18
6754 8731 3.484229 GGCGACATTGACTTCATCTTTCG 60.484 47.826 0.00 0.00 0.00 3.46
6761 8738 1.301322 TGCGGCGACATTGACTTCA 60.301 52.632 12.98 0.00 0.00 3.02
6772 8749 2.835701 GATGTCTCTTGGTGCGGCGA 62.836 60.000 12.98 0.00 0.00 5.54
6795 8772 3.291585 GTGTGTCAATCAAGCGAAACAG 58.708 45.455 0.00 0.00 0.00 3.16
6802 8782 3.981211 ACAATTGGTGTGTCAATCAAGC 58.019 40.909 10.83 0.00 39.72 4.01
6827 8807 1.529438 CTCGCTGTCGGAGTCTAGATC 59.471 57.143 0.00 0.00 36.13 2.75
6835 8815 2.880719 CTTCTGCCTCGCTGTCGGAG 62.881 65.000 0.00 0.00 36.13 4.63
6836 8816 2.989253 TTCTGCCTCGCTGTCGGA 60.989 61.111 0.00 0.00 36.13 4.55
6837 8817 2.507992 CTTCTGCCTCGCTGTCGG 60.508 66.667 0.00 0.00 36.13 4.79
6838 8818 3.184683 GCTTCTGCCTCGCTGTCG 61.185 66.667 0.00 0.00 0.00 4.35
6839 8819 1.669115 TTGCTTCTGCCTCGCTGTC 60.669 57.895 0.00 0.00 38.71 3.51
6840 8820 1.963338 GTTGCTTCTGCCTCGCTGT 60.963 57.895 0.00 0.00 38.71 4.40
6841 8821 2.684843 GGTTGCTTCTGCCTCGCTG 61.685 63.158 0.00 0.00 38.71 5.18
6842 8822 2.359230 GGTTGCTTCTGCCTCGCT 60.359 61.111 0.00 0.00 38.71 4.93
6843 8823 3.435186 GGGTTGCTTCTGCCTCGC 61.435 66.667 0.00 0.00 38.71 5.03
6844 8824 3.121030 CGGGTTGCTTCTGCCTCG 61.121 66.667 0.00 0.00 38.71 4.63
6845 8825 1.743252 CTCGGGTTGCTTCTGCCTC 60.743 63.158 0.00 0.00 38.71 4.70
6846 8826 2.348998 CTCGGGTTGCTTCTGCCT 59.651 61.111 0.00 0.00 38.71 4.75
6847 8827 3.435186 GCTCGGGTTGCTTCTGCC 61.435 66.667 0.00 0.00 38.71 4.85
6848 8828 3.435186 GGCTCGGGTTGCTTCTGC 61.435 66.667 0.00 0.00 40.20 4.26
6849 8829 2.747855 GGGCTCGGGTTGCTTCTG 60.748 66.667 0.00 0.00 0.00 3.02
6850 8830 4.035102 GGGGCTCGGGTTGCTTCT 62.035 66.667 0.00 0.00 0.00 2.85
6851 8831 4.344865 TGGGGCTCGGGTTGCTTC 62.345 66.667 0.00 0.00 0.00 3.86
6852 8832 4.351054 CTGGGGCTCGGGTTGCTT 62.351 66.667 0.00 0.00 0.00 3.91
6867 8847 4.387343 AATGGTGGGCTGGGGCTG 62.387 66.667 0.00 0.00 38.73 4.85
6868 8848 4.066139 GAATGGTGGGCTGGGGCT 62.066 66.667 0.00 0.00 38.73 5.19
6870 8850 4.463788 GGGAATGGTGGGCTGGGG 62.464 72.222 0.00 0.00 0.00 4.96
6871 8851 3.350163 AGGGAATGGTGGGCTGGG 61.350 66.667 0.00 0.00 0.00 4.45
6872 8852 0.988145 TAGAGGGAATGGTGGGCTGG 60.988 60.000 0.00 0.00 0.00 4.85
6873 8853 0.471617 CTAGAGGGAATGGTGGGCTG 59.528 60.000 0.00 0.00 0.00 4.85
6874 8854 1.348775 GCTAGAGGGAATGGTGGGCT 61.349 60.000 0.00 0.00 0.00 5.19
6875 8855 1.149401 GCTAGAGGGAATGGTGGGC 59.851 63.158 0.00 0.00 0.00 5.36
6876 8856 1.709994 GGGCTAGAGGGAATGGTGGG 61.710 65.000 0.00 0.00 0.00 4.61
6877 8857 0.988145 TGGGCTAGAGGGAATGGTGG 60.988 60.000 0.00 0.00 0.00 4.61
6878 8858 0.918983 TTGGGCTAGAGGGAATGGTG 59.081 55.000 0.00 0.00 0.00 4.17
6879 8859 1.681229 TTTGGGCTAGAGGGAATGGT 58.319 50.000 0.00 0.00 0.00 3.55
6880 8860 2.379005 GTTTTGGGCTAGAGGGAATGG 58.621 52.381 0.00 0.00 0.00 3.16
6881 8861 2.024941 AGGTTTTGGGCTAGAGGGAATG 60.025 50.000 0.00 0.00 0.00 2.67
6882 8862 2.242452 GAGGTTTTGGGCTAGAGGGAAT 59.758 50.000 0.00 0.00 0.00 3.01
6883 8863 1.633945 GAGGTTTTGGGCTAGAGGGAA 59.366 52.381 0.00 0.00 0.00 3.97
6884 8864 1.203440 AGAGGTTTTGGGCTAGAGGGA 60.203 52.381 0.00 0.00 0.00 4.20
6885 8865 1.290134 AGAGGTTTTGGGCTAGAGGG 58.710 55.000 0.00 0.00 0.00 4.30
6886 8866 2.356227 GGAAGAGGTTTTGGGCTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
6887 8867 2.305927 TGGAAGAGGTTTTGGGCTAGAG 59.694 50.000 0.00 0.00 0.00 2.43
6888 8868 2.039879 GTGGAAGAGGTTTTGGGCTAGA 59.960 50.000 0.00 0.00 0.00 2.43
6889 8869 2.437413 GTGGAAGAGGTTTTGGGCTAG 58.563 52.381 0.00 0.00 0.00 3.42
6890 8870 1.074889 GGTGGAAGAGGTTTTGGGCTA 59.925 52.381 0.00 0.00 0.00 3.93
6891 8871 0.178961 GGTGGAAGAGGTTTTGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
6892 8872 0.178961 AGGTGGAAGAGGTTTTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
6893 8873 2.239400 GAAGGTGGAAGAGGTTTTGGG 58.761 52.381 0.00 0.00 0.00 4.12
6894 8874 2.623416 GTGAAGGTGGAAGAGGTTTTGG 59.377 50.000 0.00 0.00 0.00 3.28
6895 8875 2.623416 GGTGAAGGTGGAAGAGGTTTTG 59.377 50.000 0.00 0.00 0.00 2.44
6896 8876 2.424379 GGGTGAAGGTGGAAGAGGTTTT 60.424 50.000 0.00 0.00 0.00 2.43
6897 8877 1.145119 GGGTGAAGGTGGAAGAGGTTT 59.855 52.381 0.00 0.00 0.00 3.27
6898 8878 0.771755 GGGTGAAGGTGGAAGAGGTT 59.228 55.000 0.00 0.00 0.00 3.50
6899 8879 0.401395 TGGGTGAAGGTGGAAGAGGT 60.401 55.000 0.00 0.00 0.00 3.85
6900 8880 0.326264 CTGGGTGAAGGTGGAAGAGG 59.674 60.000 0.00 0.00 0.00 3.69
6901 8881 0.322008 GCTGGGTGAAGGTGGAAGAG 60.322 60.000 0.00 0.00 0.00 2.85
6902 8882 1.761174 GCTGGGTGAAGGTGGAAGA 59.239 57.895 0.00 0.00 0.00 2.87
6903 8883 1.303643 GGCTGGGTGAAGGTGGAAG 60.304 63.158 0.00 0.00 0.00 3.46
6904 8884 1.774217 AGGCTGGGTGAAGGTGGAA 60.774 57.895 0.00 0.00 0.00 3.53
6905 8885 2.121963 AGGCTGGGTGAAGGTGGA 60.122 61.111 0.00 0.00 0.00 4.02
6906 8886 1.856539 ATCAGGCTGGGTGAAGGTGG 61.857 60.000 15.73 0.00 0.00 4.61
6907 8887 0.679002 CATCAGGCTGGGTGAAGGTG 60.679 60.000 15.73 0.00 0.00 4.00
6908 8888 1.136329 ACATCAGGCTGGGTGAAGGT 61.136 55.000 21.90 6.27 0.00 3.50
6909 8889 0.679002 CACATCAGGCTGGGTGAAGG 60.679 60.000 25.90 8.48 33.16 3.46
6910 8890 0.325933 TCACATCAGGCTGGGTGAAG 59.674 55.000 28.43 18.64 37.33 3.02
6911 8891 0.036732 GTCACATCAGGCTGGGTGAA 59.963 55.000 30.60 18.85 41.45 3.18
6912 8892 1.126948 TGTCACATCAGGCTGGGTGA 61.127 55.000 27.51 27.51 37.89 4.02
6913 8893 0.034767 ATGTCACATCAGGCTGGGTG 60.035 55.000 24.81 24.81 0.00 4.61
6914 8894 0.034767 CATGTCACATCAGGCTGGGT 60.035 55.000 15.73 10.72 0.00 4.51
6915 8895 1.381928 GCATGTCACATCAGGCTGGG 61.382 60.000 15.73 10.03 41.09 4.45
6916 8896 1.381928 GGCATGTCACATCAGGCTGG 61.382 60.000 15.73 1.44 43.32 4.85
6917 8897 0.393944 AGGCATGTCACATCAGGCTG 60.394 55.000 8.58 8.58 43.32 4.85
6918 8898 0.393944 CAGGCATGTCACATCAGGCT 60.394 55.000 0.00 0.00 43.32 4.58
6919 8899 0.393402 TCAGGCATGTCACATCAGGC 60.393 55.000 0.00 0.00 43.11 4.85
6920 8900 1.208776 TCTCAGGCATGTCACATCAGG 59.791 52.381 0.00 0.00 0.00 3.86
6921 8901 2.685850 TCTCAGGCATGTCACATCAG 57.314 50.000 0.00 0.00 0.00 2.90
6922 8902 3.538591 GAATCTCAGGCATGTCACATCA 58.461 45.455 0.00 0.00 0.00 3.07
6923 8903 2.543012 CGAATCTCAGGCATGTCACATC 59.457 50.000 0.00 0.00 0.00 3.06
6924 8904 2.093288 ACGAATCTCAGGCATGTCACAT 60.093 45.455 0.00 0.00 0.00 3.21
6925 8905 1.276138 ACGAATCTCAGGCATGTCACA 59.724 47.619 0.00 0.00 0.00 3.58
6926 8906 2.015736 ACGAATCTCAGGCATGTCAC 57.984 50.000 0.00 0.00 0.00 3.67
6927 8907 2.621338 GAACGAATCTCAGGCATGTCA 58.379 47.619 0.00 0.00 0.00 3.58
6928 8908 1.936547 GGAACGAATCTCAGGCATGTC 59.063 52.381 0.00 0.00 0.00 3.06
6929 8909 2.029838 GGAACGAATCTCAGGCATGT 57.970 50.000 0.00 0.00 0.00 3.21
6950 8930 2.278401 GCGTCGTCATCCGGGTAC 60.278 66.667 0.00 0.00 37.11 3.34
6951 8931 2.122797 ATGCGTCGTCATCCGGGTA 61.123 57.895 0.00 0.00 37.11 3.69
6952 8932 3.458163 ATGCGTCGTCATCCGGGT 61.458 61.111 0.00 0.00 37.11 5.28
6953 8933 2.961721 CATGCGTCGTCATCCGGG 60.962 66.667 0.00 0.00 37.11 5.73
6954 8934 1.946156 CTCATGCGTCGTCATCCGG 60.946 63.158 0.00 0.00 37.11 5.14
6955 8935 1.946156 CCTCATGCGTCGTCATCCG 60.946 63.158 0.00 0.00 38.13 4.18
6956 8936 2.240500 GCCTCATGCGTCGTCATCC 61.241 63.158 0.00 0.00 0.00 3.51
6957 8937 3.313750 GCCTCATGCGTCGTCATC 58.686 61.111 0.00 0.00 0.00 2.92
6993 8973 4.309950 ACGAGGTGAACCGCCCAC 62.310 66.667 0.00 0.00 42.08 4.61
6994 8974 3.998672 GACGAGGTGAACCGCCCA 61.999 66.667 0.00 0.00 42.08 5.36
7009 8989 2.025727 CGTGGATAGGTCGGCGAC 59.974 66.667 30.72 30.72 0.00 5.19
7010 8990 3.896133 GCGTGGATAGGTCGGCGA 61.896 66.667 4.99 4.99 0.00 5.54
7011 8991 4.944372 GGCGTGGATAGGTCGGCG 62.944 72.222 0.00 0.00 39.90 6.46
7012 8992 4.944372 CGGCGTGGATAGGTCGGC 62.944 72.222 0.00 0.00 44.41 5.54
7014 8994 4.944372 GCCGGCGTGGATAGGTCG 62.944 72.222 12.58 0.00 42.00 4.79
7015 8995 4.944372 CGCCGGCGTGGATAGGTC 62.944 72.222 39.71 0.00 42.00 3.85
7025 9005 4.957684 AGATCATCAGCGCCGGCG 62.958 66.667 43.13 43.13 46.35 6.46
7026 9006 2.590007 AAGATCATCAGCGCCGGC 60.590 61.111 19.07 19.07 40.37 6.13
7027 9007 0.811219 TTGAAGATCATCAGCGCCGG 60.811 55.000 2.29 0.00 0.00 6.13
7028 9008 0.580578 CTTGAAGATCATCAGCGCCG 59.419 55.000 2.29 0.00 0.00 6.46
7029 9009 0.307146 GCTTGAAGATCATCAGCGCC 59.693 55.000 2.29 0.00 0.00 6.53
7030 9010 0.042361 CGCTTGAAGATCATCAGCGC 60.042 55.000 22.18 17.28 38.81 5.92
7031 9011 1.521840 CTCGCTTGAAGATCATCAGCG 59.478 52.381 25.20 25.20 42.69 5.18
7032 9012 1.865970 CCTCGCTTGAAGATCATCAGC 59.134 52.381 0.33 6.54 0.00 4.26
7033 9013 1.865970 GCCTCGCTTGAAGATCATCAG 59.134 52.381 0.33 0.00 0.00 2.90
7034 9014 1.803998 CGCCTCGCTTGAAGATCATCA 60.804 52.381 0.00 0.00 0.00 3.07
7035 9015 0.857935 CGCCTCGCTTGAAGATCATC 59.142 55.000 0.00 0.00 0.00 2.92
7036 9016 0.176680 ACGCCTCGCTTGAAGATCAT 59.823 50.000 0.00 0.00 0.00 2.45
7037 9017 0.037326 AACGCCTCGCTTGAAGATCA 60.037 50.000 0.00 0.00 0.00 2.92
7038 9018 0.647925 GAACGCCTCGCTTGAAGATC 59.352 55.000 0.00 0.00 0.00 2.75
7039 9019 0.247736 AGAACGCCTCGCTTGAAGAT 59.752 50.000 0.00 0.00 0.00 2.40
7040 9020 0.667487 CAGAACGCCTCGCTTGAAGA 60.667 55.000 0.00 0.00 0.00 2.87
7041 9021 1.784062 CAGAACGCCTCGCTTGAAG 59.216 57.895 0.00 0.00 0.00 3.02
7042 9022 2.317609 GCAGAACGCCTCGCTTGAA 61.318 57.895 0.00 0.00 32.94 2.69
7043 9023 2.738521 GCAGAACGCCTCGCTTGA 60.739 61.111 0.00 0.00 32.94 3.02
7044 9024 2.734673 GAGCAGAACGCCTCGCTTG 61.735 63.158 0.00 0.00 44.04 4.01
7045 9025 2.433318 GAGCAGAACGCCTCGCTT 60.433 61.111 0.00 0.00 44.04 4.68
7046 9026 4.443266 GGAGCAGAACGCCTCGCT 62.443 66.667 0.00 0.00 44.04 4.93
7054 9034 4.681978 ACCACGCCGGAGCAGAAC 62.682 66.667 5.05 0.00 39.83 3.01
7055 9035 4.680237 CACCACGCCGGAGCAGAA 62.680 66.667 5.05 0.00 39.83 3.02
7057 9037 3.958147 AATCACCACGCCGGAGCAG 62.958 63.158 5.05 0.00 39.83 4.24
7058 9038 3.950794 GAATCACCACGCCGGAGCA 62.951 63.158 5.05 0.00 39.83 4.26
7059 9039 3.195698 GAATCACCACGCCGGAGC 61.196 66.667 5.05 0.00 38.63 4.70
7060 9040 2.511600 GGAATCACCACGCCGGAG 60.512 66.667 5.05 3.72 38.63 4.63
7061 9041 4.090588 GGGAATCACCACGCCGGA 62.091 66.667 5.05 0.00 41.20 5.14
7067 9047 0.962356 CAGCACAGGGGAATCACCAC 60.962 60.000 3.57 0.00 43.70 4.16
7068 9048 1.379916 CAGCACAGGGGAATCACCA 59.620 57.895 3.57 0.00 41.20 4.17
7069 9049 4.326255 CAGCACAGGGGAATCACC 57.674 61.111 0.00 0.00 38.08 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.