Multiple sequence alignment - TraesCS4D01G196800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G196800 chr4D 100.000 2669 0 0 1 2669 341413693 341411025 0.000000e+00 4892.0
1 TraesCS4D01G196800 chr4D 90.842 404 19 3 2283 2669 490423080 490422678 2.350000e-145 525.0
2 TraesCS4D01G196800 chr4D 97.727 44 0 1 2045 2087 15786273 15786230 1.020000e-09 75.0
3 TraesCS4D01G196800 chr4D 93.750 48 2 1 2039 2085 394295032 394295079 1.330000e-08 71.3
4 TraesCS4D01G196800 chr4A 92.468 1925 98 14 172 2072 125388407 125390308 0.000000e+00 2710.0
5 TraesCS4D01G196800 chr4A 88.482 382 39 4 2290 2669 236161675 236162053 8.710000e-125 457.0
6 TraesCS4D01G196800 chr4A 94.643 56 3 0 111 166 125388210 125388265 1.320000e-13 87.9
7 TraesCS4D01G196800 chr4A 85.897 78 9 2 2066 2142 125390617 125390693 6.120000e-12 82.4
8 TraesCS4D01G196800 chr4A 96.875 32 1 0 2106 2137 125390247 125390278 1.000000e-03 54.7
9 TraesCS4D01G196800 chr4B 85.955 1367 122 34 731 2050 423356220 423354877 0.000000e+00 1397.0
10 TraesCS4D01G196800 chr4B 90.955 398 20 1 2288 2669 242726233 242725836 3.040000e-144 521.0
11 TraesCS4D01G196800 chr2A 92.670 382 26 1 2290 2669 736533288 736533669 1.400000e-152 549.0
12 TraesCS4D01G196800 chr2A 83.967 368 45 8 2299 2662 79446797 79447154 9.150000e-90 340.0
13 TraesCS4D01G196800 chr6D 90.551 381 35 1 2290 2669 379010070 379009690 1.100000e-138 503.0
14 TraesCS4D01G196800 chrUn 100.000 271 0 0 1 271 298898489 298898759 3.970000e-138 501.0
15 TraesCS4D01G196800 chr5D 89.196 398 25 4 2290 2669 254523560 254523957 5.170000e-132 481.0
16 TraesCS4D01G196800 chr7A 90.855 339 12 4 2291 2610 736413819 736413481 1.130000e-118 436.0
17 TraesCS4D01G196800 chr1B 88.103 311 35 2 2308 2617 662639117 662638808 4.200000e-98 368.0
18 TraesCS4D01G196800 chr1B 92.000 50 3 1 2038 2086 368543435 368543386 4.770000e-08 69.4
19 TraesCS4D01G196800 chr7D 96.209 211 8 0 2290 2500 3428761 3428551 1.970000e-91 346.0
20 TraesCS4D01G196800 chr6B 89.627 241 22 3 2430 2669 545208118 545207880 1.200000e-78 303.0
21 TraesCS4D01G196800 chr6B 95.745 47 1 1 2041 2086 618334940 618334986 1.020000e-09 75.0
22 TraesCS4D01G196800 chr1D 92.353 170 13 0 2500 2669 109989075 109989244 2.650000e-60 243.0
23 TraesCS4D01G196800 chr2D 95.833 48 0 2 2045 2090 627976198 627976151 2.850000e-10 76.8
24 TraesCS4D01G196800 chr7B 93.878 49 1 2 2043 2089 157681767 157681719 3.690000e-09 73.1
25 TraesCS4D01G196800 chr7B 90.566 53 3 2 2035 2086 672653154 672653205 4.770000e-08 69.4
26 TraesCS4D01G196800 chr2B 97.674 43 0 1 2045 2086 36590147 36590189 3.690000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G196800 chr4D 341411025 341413693 2668 True 4892.00 4892 100.00000 1 2669 1 chr4D.!!$R2 2668
1 TraesCS4D01G196800 chr4A 125388210 125390693 2483 False 733.75 2710 92.47075 111 2142 4 chr4A.!!$F2 2031
2 TraesCS4D01G196800 chr4B 423354877 423356220 1343 True 1397.00 1397 85.95500 731 2050 1 chr4B.!!$R2 1319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.179134 GTTCGGAGGACTGGACGATG 60.179 60.0 0.0 0.0 35.1 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 1940 0.108329 CGCATCCCAAGGAACGTACT 60.108 55.0 0.0 0.0 34.34 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.777832 AGGTCTCATGTTTCTCTGGC 57.222 50.000 0.00 0.00 0.00 4.85
22 23 1.066573 AGGTCTCATGTTTCTCTGGCG 60.067 52.381 0.00 0.00 0.00 5.69
23 24 1.338200 GGTCTCATGTTTCTCTGGCGT 60.338 52.381 0.00 0.00 0.00 5.68
24 25 2.417719 GTCTCATGTTTCTCTGGCGTT 58.582 47.619 0.00 0.00 0.00 4.84
25 26 2.413453 GTCTCATGTTTCTCTGGCGTTC 59.587 50.000 0.00 0.00 0.00 3.95
26 27 1.391485 CTCATGTTTCTCTGGCGTTCG 59.609 52.381 0.00 0.00 0.00 3.95
27 28 0.443869 CATGTTTCTCTGGCGTTCGG 59.556 55.000 0.00 0.00 0.00 4.30
28 29 0.320374 ATGTTTCTCTGGCGTTCGGA 59.680 50.000 0.00 0.00 0.00 4.55
30 31 1.014564 GTTTCTCTGGCGTTCGGAGG 61.015 60.000 13.94 0.00 46.40 4.30
31 32 1.183030 TTTCTCTGGCGTTCGGAGGA 61.183 55.000 13.94 5.55 46.40 3.71
32 33 1.874345 TTCTCTGGCGTTCGGAGGAC 61.874 60.000 13.94 0.00 46.40 3.85
33 34 2.282958 TCTGGCGTTCGGAGGACT 60.283 61.111 0.00 0.00 0.00 3.85
34 35 2.125912 CTGGCGTTCGGAGGACTG 60.126 66.667 0.00 0.00 0.00 3.51
35 36 3.649277 CTGGCGTTCGGAGGACTGG 62.649 68.421 0.00 0.00 0.00 4.00
36 37 3.379445 GGCGTTCGGAGGACTGGA 61.379 66.667 0.00 0.00 0.00 3.86
37 38 2.126031 GCGTTCGGAGGACTGGAC 60.126 66.667 0.00 0.00 0.00 4.02
38 39 2.178521 CGTTCGGAGGACTGGACG 59.821 66.667 0.00 0.00 45.92 4.79
39 40 3.677527 GTTCGGAGGACTGGACGA 58.322 61.111 0.00 0.00 0.00 4.20
40 41 2.190756 GTTCGGAGGACTGGACGAT 58.809 57.895 0.00 0.00 35.10 3.73
41 42 0.179134 GTTCGGAGGACTGGACGATG 60.179 60.000 0.00 0.00 35.10 3.84
42 43 1.945354 TTCGGAGGACTGGACGATGC 61.945 60.000 0.00 0.00 35.10 3.91
43 44 2.710902 CGGAGGACTGGACGATGCA 61.711 63.158 0.00 0.00 0.00 3.96
44 45 1.596934 GGAGGACTGGACGATGCAA 59.403 57.895 0.00 0.00 0.00 4.08
45 46 0.741221 GGAGGACTGGACGATGCAAC 60.741 60.000 0.00 0.00 0.00 4.17
46 47 0.247736 GAGGACTGGACGATGCAACT 59.752 55.000 0.00 0.00 0.00 3.16
47 48 0.687354 AGGACTGGACGATGCAACTT 59.313 50.000 0.00 0.00 0.00 2.66
48 49 1.072331 AGGACTGGACGATGCAACTTT 59.928 47.619 0.00 0.00 0.00 2.66
49 50 1.197721 GGACTGGACGATGCAACTTTG 59.802 52.381 0.00 0.00 0.00 2.77
58 59 3.318875 GCAACTTTGCGGTTTGCC 58.681 55.556 0.00 0.00 45.11 4.52
76 77 3.435186 GGAGACGGCAAAGCTGGC 61.435 66.667 0.00 0.00 44.62 4.85
79 80 2.669569 GACGGCAAAGCTGGCTGA 60.670 61.111 22.34 0.00 45.82 4.26
80 81 2.034687 ACGGCAAAGCTGGCTGAT 59.965 55.556 22.34 7.37 45.82 2.90
81 82 2.262471 GACGGCAAAGCTGGCTGATG 62.262 60.000 22.34 8.25 45.82 3.07
82 83 2.890371 GGCAAAGCTGGCTGATGG 59.110 61.111 10.13 0.00 44.62 3.51
83 84 1.980772 GGCAAAGCTGGCTGATGGT 60.981 57.895 10.13 0.00 44.62 3.55
84 85 1.214589 GCAAAGCTGGCTGATGGTG 59.785 57.895 3.50 0.00 0.00 4.17
85 86 1.246056 GCAAAGCTGGCTGATGGTGA 61.246 55.000 3.50 0.00 0.00 4.02
86 87 1.250328 CAAAGCTGGCTGATGGTGAA 58.750 50.000 0.00 0.00 0.00 3.18
87 88 1.614903 CAAAGCTGGCTGATGGTGAAA 59.385 47.619 0.00 0.00 0.00 2.69
88 89 1.999648 AAGCTGGCTGATGGTGAAAA 58.000 45.000 0.00 0.00 0.00 2.29
89 90 2.226962 AGCTGGCTGATGGTGAAAAT 57.773 45.000 0.00 0.00 0.00 1.82
90 91 1.822990 AGCTGGCTGATGGTGAAAATG 59.177 47.619 0.00 0.00 0.00 2.32
91 92 1.738030 GCTGGCTGATGGTGAAAATGC 60.738 52.381 0.00 0.00 0.00 3.56
92 93 0.896923 TGGCTGATGGTGAAAATGCC 59.103 50.000 0.00 0.00 39.33 4.40
93 94 0.896923 GGCTGATGGTGAAAATGCCA 59.103 50.000 0.00 0.00 38.79 4.92
94 95 5.002603 CTGGCTGATGGTGAAAATGCCAT 62.003 47.826 0.00 0.00 46.11 4.40
95 96 2.093341 GGCTGATGGTGAAAATGCCATT 60.093 45.455 0.00 0.00 44.73 3.16
96 97 2.933906 GCTGATGGTGAAAATGCCATTG 59.066 45.455 0.00 0.00 44.73 2.82
97 98 3.527533 CTGATGGTGAAAATGCCATTGG 58.472 45.455 0.00 0.00 44.73 3.16
98 99 3.171528 TGATGGTGAAAATGCCATTGGA 58.828 40.909 6.95 0.00 44.73 3.53
99 100 3.196039 TGATGGTGAAAATGCCATTGGAG 59.804 43.478 6.95 0.00 44.73 3.86
100 101 2.607499 TGGTGAAAATGCCATTGGAGT 58.393 42.857 6.95 0.00 0.00 3.85
101 102 2.299582 TGGTGAAAATGCCATTGGAGTG 59.700 45.455 6.95 0.00 0.00 3.51
102 103 2.562298 GGTGAAAATGCCATTGGAGTGA 59.438 45.455 6.95 0.00 0.00 3.41
103 104 3.006752 GGTGAAAATGCCATTGGAGTGAA 59.993 43.478 6.95 0.00 0.00 3.18
104 105 4.502950 GGTGAAAATGCCATTGGAGTGAAA 60.503 41.667 6.95 0.00 0.00 2.69
105 106 5.055812 GTGAAAATGCCATTGGAGTGAAAA 58.944 37.500 6.95 0.00 0.00 2.29
106 107 5.702209 GTGAAAATGCCATTGGAGTGAAAAT 59.298 36.000 6.95 0.00 0.00 1.82
107 108 6.873076 GTGAAAATGCCATTGGAGTGAAAATA 59.127 34.615 6.95 0.00 0.00 1.40
108 109 7.550196 GTGAAAATGCCATTGGAGTGAAAATAT 59.450 33.333 6.95 0.00 0.00 1.28
109 110 7.765360 TGAAAATGCCATTGGAGTGAAAATATC 59.235 33.333 6.95 0.00 0.00 1.63
126 127 8.015087 TGAAAATATCGATAAATGTTGGCGATC 58.985 33.333 9.61 0.00 41.35 3.69
130 131 2.155732 CGATAAATGTTGGCGATCCGAG 59.844 50.000 0.00 0.00 34.14 4.63
145 146 1.154225 CGAGCGTTGGATTGGCAAC 60.154 57.895 0.00 0.00 0.00 4.17
166 167 2.223203 CGAATGAACCAGATCAAGCTGC 60.223 50.000 0.00 0.00 34.56 5.25
167 168 2.803030 ATGAACCAGATCAAGCTGCT 57.197 45.000 0.00 0.00 34.56 4.24
169 170 1.339438 TGAACCAGATCAAGCTGCTCC 60.339 52.381 1.00 0.00 34.56 4.70
195 332 1.714899 CCATGCCGTCACCCGAATTC 61.715 60.000 0.00 0.00 39.56 2.17
200 337 1.808390 CGTCACCCGAATTCGTCCC 60.808 63.158 25.10 8.31 39.56 4.46
205 342 2.203015 CCGAATTCGTCCCGCCAT 60.203 61.111 25.10 0.00 37.74 4.40
254 391 2.691732 CTGGTGCCCCCATCCAAT 59.308 61.111 0.00 0.00 44.15 3.16
265 402 0.466007 CCATCCAATCCGCCATCACA 60.466 55.000 0.00 0.00 0.00 3.58
266 403 1.612676 CATCCAATCCGCCATCACAT 58.387 50.000 0.00 0.00 0.00 3.21
342 480 1.270094 GCCTTACAAAAACCACCAGCC 60.270 52.381 0.00 0.00 0.00 4.85
345 483 0.752009 TACAAAAACCACCAGCCGCA 60.752 50.000 0.00 0.00 0.00 5.69
346 484 1.300080 CAAAAACCACCAGCCGCAG 60.300 57.895 0.00 0.00 0.00 5.18
400 538 6.667007 TGTGAGTAAACATGTATGCAGATG 57.333 37.500 0.00 0.00 0.00 2.90
419 557 8.410030 GCAGATGCATTAATGTGTTAAAATGA 57.590 30.769 16.61 0.00 41.59 2.57
443 600 5.690997 CATGGAATGTGATCTGAAGATGG 57.309 43.478 0.00 0.00 40.20 3.51
450 607 2.096496 GTGATCTGAAGATGGCAAACCG 59.904 50.000 0.00 0.00 39.70 4.44
494 651 4.081254 GTCTTAAAGGACCGGAATACACCT 60.081 45.833 9.46 3.81 0.00 4.00
495 652 4.533311 TCTTAAAGGACCGGAATACACCTT 59.467 41.667 9.46 9.95 41.83 3.50
496 653 5.721000 TCTTAAAGGACCGGAATACACCTTA 59.279 40.000 9.46 0.00 39.59 2.69
497 654 6.384886 TCTTAAAGGACCGGAATACACCTTAT 59.615 38.462 9.46 6.78 39.59 1.73
498 655 7.564660 TCTTAAAGGACCGGAATACACCTTATA 59.435 37.037 9.46 5.99 39.59 0.98
551 708 7.736447 AACCTATTTCTTCTGTGAACTGAAG 57.264 36.000 18.76 18.76 46.64 3.02
599 756 7.181665 ACATCATATGCTAATACTCTGGATGGT 59.818 37.037 0.00 0.00 0.00 3.55
602 759 2.104792 TGCTAATACTCTGGATGGTGGC 59.895 50.000 0.00 0.00 0.00 5.01
618 775 2.583143 GTGGCCATCATAGTTAACCCC 58.417 52.381 9.72 0.00 0.00 4.95
636 793 3.990245 ACCCCAAGAGGCCAATATTATCT 59.010 43.478 5.01 0.00 0.00 1.98
655 812 8.798859 ATTATCTTATTCCATGGATACTGTGC 57.201 34.615 17.06 0.00 37.61 4.57
763 920 0.590195 GTCTGCTCTGCTGTTGTTGG 59.410 55.000 0.00 0.00 0.00 3.77
793 950 4.770795 CCTGTCTGGGTCATAAAGGTTAG 58.229 47.826 0.00 0.00 0.00 2.34
857 1018 3.815401 GTGGTGAGTGATTTAGTGCTGTT 59.185 43.478 0.00 0.00 0.00 3.16
999 1165 6.771267 AGTTACCCGAGAACAAATCTTTCTTT 59.229 34.615 0.00 0.00 38.96 2.52
1000 1166 7.935210 AGTTACCCGAGAACAAATCTTTCTTTA 59.065 33.333 0.00 0.00 38.96 1.85
1021 1187 6.806120 TTATGTGTTATCGACTTCATGACG 57.194 37.500 0.00 0.00 35.33 4.35
1089 1256 6.150976 GGTCAAATTCTGTCATGAATACCACA 59.849 38.462 0.00 0.00 34.84 4.17
1161 1328 0.395312 AGTTCAAACGATGGGGACGT 59.605 50.000 0.00 0.00 45.89 4.34
1289 1456 3.055891 GCACTGGCCAAAATACAGGAAAT 60.056 43.478 7.01 0.00 36.57 2.17
1340 1508 7.384660 GCATCCTTTTGTTTCACATATTTGACA 59.615 33.333 0.00 0.00 0.00 3.58
1378 1546 5.912396 TGTATTTTGCAGCAAAGAAGTAACG 59.088 36.000 19.74 0.00 34.72 3.18
1716 1908 5.722290 AGGAGTGGGGGATTTTCTTAAAAA 58.278 37.500 0.00 0.00 38.66 1.94
1722 1914 5.480422 TGGGGGATTTTCTTAAAAAGCTCTC 59.520 40.000 0.00 0.00 41.25 3.20
1747 1939 8.975439 TCAAGTAGTTTCTTCGTATTGTTTCTC 58.025 33.333 0.00 0.00 0.00 2.87
1748 1940 8.761497 CAAGTAGTTTCTTCGTATTGTTTCTCA 58.239 33.333 0.00 0.00 0.00 3.27
1749 1941 8.522178 AGTAGTTTCTTCGTATTGTTTCTCAG 57.478 34.615 0.00 0.00 0.00 3.35
1752 1944 8.295569 AGTTTCTTCGTATTGTTTCTCAGTAC 57.704 34.615 0.00 0.00 36.38 2.73
1767 1959 0.108329 AGTACGTTCCTTGGGATGCG 60.108 55.000 0.00 8.62 36.84 4.73
1813 2005 6.083098 ACGGAGACATTATCATCAGAGAAG 57.917 41.667 0.00 0.00 0.00 2.85
1815 2007 6.773200 ACGGAGACATTATCATCAGAGAAGTA 59.227 38.462 0.00 0.00 0.00 2.24
1863 2055 5.205056 AGAGACTTAGGTCGATGATCCTTT 58.795 41.667 0.00 0.00 46.29 3.11
1898 2097 3.643763 CGTAGGAATCATCTGTGTAGCC 58.356 50.000 0.00 0.00 0.00 3.93
1910 2109 2.968574 CTGTGTAGCCATAGGAGATGGT 59.031 50.000 5.52 0.00 41.17 3.55
1927 2126 1.202758 TGGTCATTTTCACAGTCCGCT 60.203 47.619 0.00 0.00 0.00 5.52
1931 2130 2.548057 TCATTTTCACAGTCCGCTCAAC 59.452 45.455 0.00 0.00 0.00 3.18
1969 2168 3.798202 AGTTGATCGAATACTGCCTTCC 58.202 45.455 0.00 0.00 0.00 3.46
2033 2236 7.077605 CGTGTGAACAATCAGATTTTGTATGT 58.922 34.615 0.00 0.00 36.32 2.29
2075 2594 4.181578 CCTCCGTCCCATAATATAAAGCG 58.818 47.826 0.00 0.00 0.00 4.68
2082 2601 7.411274 CGTCCCATAATATAAAGCGTTTTTGA 58.589 34.615 1.60 0.00 0.00 2.69
2087 2606 9.009327 CCATAATATAAAGCGTTTTTGACACAG 57.991 33.333 1.60 0.00 0.00 3.66
2088 2607 9.554724 CATAATATAAAGCGTTTTTGACACAGT 57.445 29.630 1.60 0.00 0.00 3.55
2092 2611 4.957759 AAGCGTTTTTGACACAGTACTT 57.042 36.364 0.00 0.00 0.00 2.24
2096 2615 6.483687 AGCGTTTTTGACACAGTACTTTAAG 58.516 36.000 0.00 0.00 0.00 1.85
2097 2616 5.170803 GCGTTTTTGACACAGTACTTTAAGC 59.829 40.000 0.00 0.00 0.00 3.09
2098 2617 5.391433 CGTTTTTGACACAGTACTTTAAGCG 59.609 40.000 0.00 0.00 0.00 4.68
2099 2618 6.253013 GTTTTTGACACAGTACTTTAAGCGT 58.747 36.000 0.00 0.00 0.00 5.07
2100 2619 5.398176 TTTGACACAGTACTTTAAGCGTG 57.602 39.130 7.11 7.11 0.00 5.34
2101 2620 4.049546 TGACACAGTACTTTAAGCGTGT 57.950 40.909 12.69 12.69 40.11 4.49
2102 2621 3.799963 TGACACAGTACTTTAAGCGTGTG 59.200 43.478 16.51 15.75 37.69 3.82
2131 2650 7.037438 GTGAACAATCAGATTTTGTATGCCAT 58.963 34.615 0.00 0.00 36.32 4.40
2151 2670 8.556213 TGCCATTTCTTATATTATTACGGGAC 57.444 34.615 0.00 0.00 0.00 4.46
2152 2671 8.158132 TGCCATTTCTTATATTATTACGGGACA 58.842 33.333 0.00 0.00 0.00 4.02
2153 2672 8.665685 GCCATTTCTTATATTATTACGGGACAG 58.334 37.037 0.00 0.00 0.00 3.51
2154 2673 9.938280 CCATTTCTTATATTATTACGGGACAGA 57.062 33.333 0.00 0.00 0.00 3.41
2157 2676 7.713734 TCTTATATTATTACGGGACAGAGGG 57.286 40.000 0.00 0.00 0.00 4.30
2158 2677 7.472741 TCTTATATTATTACGGGACAGAGGGA 58.527 38.462 0.00 0.00 0.00 4.20
2159 2678 7.614583 TCTTATATTATTACGGGACAGAGGGAG 59.385 40.741 0.00 0.00 0.00 4.30
2160 2679 3.393426 TTATTACGGGACAGAGGGAGT 57.607 47.619 0.00 0.00 0.00 3.85
2161 2680 4.524802 TTATTACGGGACAGAGGGAGTA 57.475 45.455 0.00 0.00 0.00 2.59
2162 2681 2.905415 TTACGGGACAGAGGGAGTAA 57.095 50.000 0.00 0.00 0.00 2.24
2163 2682 3.393426 TTACGGGACAGAGGGAGTAAT 57.607 47.619 0.00 0.00 0.00 1.89
2164 2683 1.777941 ACGGGACAGAGGGAGTAATC 58.222 55.000 0.00 0.00 0.00 1.75
2165 2684 1.006758 ACGGGACAGAGGGAGTAATCA 59.993 52.381 0.00 0.00 0.00 2.57
2166 2685 1.683917 CGGGACAGAGGGAGTAATCAG 59.316 57.143 0.00 0.00 0.00 2.90
2167 2686 2.753247 GGGACAGAGGGAGTAATCAGT 58.247 52.381 0.00 0.00 0.00 3.41
2168 2687 3.108376 GGGACAGAGGGAGTAATCAGTT 58.892 50.000 0.00 0.00 0.00 3.16
2169 2688 3.519913 GGGACAGAGGGAGTAATCAGTTT 59.480 47.826 0.00 0.00 0.00 2.66
2170 2689 4.019231 GGGACAGAGGGAGTAATCAGTTTT 60.019 45.833 0.00 0.00 0.00 2.43
2171 2690 4.938226 GGACAGAGGGAGTAATCAGTTTTG 59.062 45.833 0.00 0.00 0.00 2.44
2172 2691 5.513267 GGACAGAGGGAGTAATCAGTTTTGT 60.513 44.000 0.00 0.00 0.00 2.83
2173 2692 5.552178 ACAGAGGGAGTAATCAGTTTTGTC 58.448 41.667 0.00 0.00 0.00 3.18
2174 2693 5.071788 ACAGAGGGAGTAATCAGTTTTGTCA 59.928 40.000 0.00 0.00 0.00 3.58
2175 2694 5.409826 CAGAGGGAGTAATCAGTTTTGTCAC 59.590 44.000 0.00 0.00 0.00 3.67
2176 2695 4.315803 AGGGAGTAATCAGTTTTGTCACG 58.684 43.478 0.00 0.00 0.00 4.35
2177 2696 4.039973 AGGGAGTAATCAGTTTTGTCACGA 59.960 41.667 0.00 0.00 0.00 4.35
2178 2697 4.389077 GGGAGTAATCAGTTTTGTCACGAG 59.611 45.833 0.00 0.00 0.00 4.18
2179 2698 4.143094 GGAGTAATCAGTTTTGTCACGAGC 60.143 45.833 0.00 0.00 0.00 5.03
2180 2699 4.377021 AGTAATCAGTTTTGTCACGAGCA 58.623 39.130 0.00 0.00 0.00 4.26
2181 2700 3.609103 AATCAGTTTTGTCACGAGCAC 57.391 42.857 0.00 0.00 0.00 4.40
2182 2701 2.309528 TCAGTTTTGTCACGAGCACT 57.690 45.000 0.00 0.00 0.00 4.40
2183 2702 3.446310 TCAGTTTTGTCACGAGCACTA 57.554 42.857 0.00 0.00 0.00 2.74
2184 2703 3.120792 TCAGTTTTGTCACGAGCACTAC 58.879 45.455 0.00 0.00 0.00 2.73
2185 2704 2.863740 CAGTTTTGTCACGAGCACTACA 59.136 45.455 0.00 0.00 0.00 2.74
2186 2705 3.308595 CAGTTTTGTCACGAGCACTACAA 59.691 43.478 0.00 0.00 0.00 2.41
2187 2706 3.936453 AGTTTTGTCACGAGCACTACAAA 59.064 39.130 0.00 0.00 39.39 2.83
2188 2707 4.393680 AGTTTTGTCACGAGCACTACAAAA 59.606 37.500 7.84 7.84 44.91 2.44
2189 2708 5.493133 TTTTGTCACGAGCACTACAAAAT 57.507 34.783 7.84 0.00 43.27 1.82
2190 2709 4.466567 TTGTCACGAGCACTACAAAATG 57.533 40.909 0.00 0.00 0.00 2.32
2191 2710 2.805671 TGTCACGAGCACTACAAAATGG 59.194 45.455 0.00 0.00 0.00 3.16
2192 2711 3.064207 GTCACGAGCACTACAAAATGGA 58.936 45.455 0.00 0.00 0.00 3.41
2193 2712 3.496884 GTCACGAGCACTACAAAATGGAA 59.503 43.478 0.00 0.00 0.00 3.53
2194 2713 4.024387 GTCACGAGCACTACAAAATGGAAA 60.024 41.667 0.00 0.00 0.00 3.13
2195 2714 4.213270 TCACGAGCACTACAAAATGGAAAG 59.787 41.667 0.00 0.00 0.00 2.62
2196 2715 4.213270 CACGAGCACTACAAAATGGAAAGA 59.787 41.667 0.00 0.00 0.00 2.52
2197 2716 4.819630 ACGAGCACTACAAAATGGAAAGAA 59.180 37.500 0.00 0.00 0.00 2.52
2198 2717 5.298276 ACGAGCACTACAAAATGGAAAGAAA 59.702 36.000 0.00 0.00 0.00 2.52
2199 2718 6.183360 ACGAGCACTACAAAATGGAAAGAAAA 60.183 34.615 0.00 0.00 0.00 2.29
2200 2719 6.863126 CGAGCACTACAAAATGGAAAGAAAAT 59.137 34.615 0.00 0.00 0.00 1.82
2201 2720 7.382218 CGAGCACTACAAAATGGAAAGAAAATT 59.618 33.333 0.00 0.00 0.00 1.82
2202 2721 8.369218 AGCACTACAAAATGGAAAGAAAATTG 57.631 30.769 0.00 0.00 0.00 2.32
2203 2722 7.986889 AGCACTACAAAATGGAAAGAAAATTGT 59.013 29.630 0.00 0.00 34.31 2.71
2204 2723 8.611757 GCACTACAAAATGGAAAGAAAATTGTT 58.388 29.630 0.00 0.00 32.39 2.83
2205 2724 9.919348 CACTACAAAATGGAAAGAAAATTGTTG 57.081 29.630 0.00 0.00 32.39 3.33
2206 2725 9.883142 ACTACAAAATGGAAAGAAAATTGTTGA 57.117 25.926 0.00 0.00 32.39 3.18
2209 2728 8.882736 ACAAAATGGAAAGAAAATTGTTGAGAC 58.117 29.630 0.00 0.00 0.00 3.36
2210 2729 8.881743 CAAAATGGAAAGAAAATTGTTGAGACA 58.118 29.630 0.00 0.00 0.00 3.41
2211 2730 8.424274 AAATGGAAAGAAAATTGTTGAGACAC 57.576 30.769 0.00 0.00 34.98 3.67
2212 2731 5.901552 TGGAAAGAAAATTGTTGAGACACC 58.098 37.500 0.00 0.00 34.98 4.16
2213 2732 4.976116 GGAAAGAAAATTGTTGAGACACCG 59.024 41.667 0.00 0.00 34.98 4.94
2214 2733 5.220970 GGAAAGAAAATTGTTGAGACACCGA 60.221 40.000 0.00 0.00 34.98 4.69
2215 2734 5.424121 AAGAAAATTGTTGAGACACCGAG 57.576 39.130 0.00 0.00 34.98 4.63
2216 2735 3.815401 AGAAAATTGTTGAGACACCGAGG 59.185 43.478 0.00 0.00 34.98 4.63
2217 2736 1.523758 AATTGTTGAGACACCGAGGC 58.476 50.000 0.00 0.00 34.98 4.70
2218 2737 0.321653 ATTGTTGAGACACCGAGGCC 60.322 55.000 0.00 0.00 34.98 5.19
2219 2738 2.047179 GTTGAGACACCGAGGCCC 60.047 66.667 0.00 0.00 0.00 5.80
2220 2739 3.691342 TTGAGACACCGAGGCCCG 61.691 66.667 0.00 2.20 38.18 6.13
2221 2740 4.988716 TGAGACACCGAGGCCCGT 62.989 66.667 0.00 0.00 36.31 5.28
2222 2741 2.753043 GAGACACCGAGGCCCGTA 60.753 66.667 0.00 0.00 36.31 4.02
2223 2742 2.043248 AGACACCGAGGCCCGTAT 60.043 61.111 0.00 0.00 36.31 3.06
2224 2743 1.673808 GAGACACCGAGGCCCGTATT 61.674 60.000 0.00 0.00 36.31 1.89
2225 2744 1.227176 GACACCGAGGCCCGTATTC 60.227 63.158 0.00 0.00 36.31 1.75
2226 2745 2.279252 CACCGAGGCCCGTATTCG 60.279 66.667 0.00 0.67 36.31 3.34
2237 2756 3.825812 CGTATTCGGCTGCCAAATC 57.174 52.632 20.29 5.71 0.00 2.17
2238 2757 1.013596 CGTATTCGGCTGCCAAATCA 58.986 50.000 20.29 0.00 0.00 2.57
2239 2758 1.268032 CGTATTCGGCTGCCAAATCAC 60.268 52.381 20.29 9.99 0.00 3.06
2240 2759 1.065551 GTATTCGGCTGCCAAATCACC 59.934 52.381 20.29 0.34 0.00 4.02
2241 2760 1.322538 ATTCGGCTGCCAAATCACCC 61.323 55.000 20.29 0.00 0.00 4.61
2242 2761 3.451894 CGGCTGCCAAATCACCCC 61.452 66.667 20.29 0.00 0.00 4.95
2243 2762 3.451894 GGCTGCCAAATCACCCCG 61.452 66.667 15.17 0.00 0.00 5.73
2244 2763 3.451894 GCTGCCAAATCACCCCGG 61.452 66.667 0.00 0.00 0.00 5.73
2245 2764 3.451894 CTGCCAAATCACCCCGGC 61.452 66.667 0.00 0.00 45.11 6.13
2246 2765 3.944250 CTGCCAAATCACCCCGGCT 62.944 63.158 0.00 0.00 45.13 5.52
2247 2766 3.140814 GCCAAATCACCCCGGCTC 61.141 66.667 0.00 0.00 41.50 4.70
2248 2767 2.824041 CCAAATCACCCCGGCTCG 60.824 66.667 0.00 0.00 0.00 5.03
2249 2768 2.267642 CAAATCACCCCGGCTCGA 59.732 61.111 0.00 0.00 0.00 4.04
2250 2769 1.153168 CAAATCACCCCGGCTCGAT 60.153 57.895 0.00 0.00 0.00 3.59
2251 2770 0.748005 CAAATCACCCCGGCTCGATT 60.748 55.000 0.00 0.00 0.00 3.34
2252 2771 0.034477 AAATCACCCCGGCTCGATTT 60.034 50.000 14.10 14.10 34.16 2.17
2253 2772 0.748005 AATCACCCCGGCTCGATTTG 60.748 55.000 0.00 0.00 0.00 2.32
2254 2773 1.622607 ATCACCCCGGCTCGATTTGA 61.623 55.000 0.00 0.00 0.00 2.69
2255 2774 1.376683 CACCCCGGCTCGATTTGAA 60.377 57.895 0.00 0.00 0.00 2.69
2256 2775 0.958382 CACCCCGGCTCGATTTGAAA 60.958 55.000 0.00 0.00 0.00 2.69
2257 2776 0.958876 ACCCCGGCTCGATTTGAAAC 60.959 55.000 0.00 0.00 0.00 2.78
2258 2777 0.676782 CCCCGGCTCGATTTGAAACT 60.677 55.000 0.00 0.00 0.00 2.66
2259 2778 1.165270 CCCGGCTCGATTTGAAACTT 58.835 50.000 0.00 0.00 0.00 2.66
2260 2779 1.130561 CCCGGCTCGATTTGAAACTTC 59.869 52.381 0.00 0.00 0.00 3.01
2261 2780 1.804151 CCGGCTCGATTTGAAACTTCA 59.196 47.619 0.00 0.00 34.92 3.02
2262 2781 2.420022 CCGGCTCGATTTGAAACTTCAT 59.580 45.455 0.00 0.00 37.00 2.57
2263 2782 3.419915 CGGCTCGATTTGAAACTTCATG 58.580 45.455 0.00 0.00 37.00 3.07
2264 2783 3.728864 CGGCTCGATTTGAAACTTCATGG 60.729 47.826 0.00 0.00 37.00 3.66
2265 2784 3.174375 GCTCGATTTGAAACTTCATGGC 58.826 45.455 0.00 0.00 37.00 4.40
2266 2785 3.419915 CTCGATTTGAAACTTCATGGCG 58.580 45.455 0.00 0.00 37.00 5.69
2267 2786 3.070748 TCGATTTGAAACTTCATGGCGA 58.929 40.909 0.00 0.93 37.00 5.54
2268 2787 3.500299 TCGATTTGAAACTTCATGGCGAA 59.500 39.130 0.00 0.00 37.00 4.70
2275 2794 1.135315 CTTCATGGCGAAGTTGGCG 59.865 57.895 3.64 0.00 45.29 5.69
2276 2795 1.298157 CTTCATGGCGAAGTTGGCGA 61.298 55.000 3.64 0.00 45.29 5.54
2277 2796 1.298157 TTCATGGCGAAGTTGGCGAG 61.298 55.000 3.64 0.00 37.19 5.03
2278 2797 1.741401 CATGGCGAAGTTGGCGAGA 60.741 57.895 3.64 0.00 37.19 4.04
2279 2798 1.091771 CATGGCGAAGTTGGCGAGAT 61.092 55.000 3.64 0.00 37.19 2.75
2280 2799 0.811616 ATGGCGAAGTTGGCGAGATC 60.812 55.000 3.64 0.00 37.19 2.75
2281 2800 2.174319 GGCGAAGTTGGCGAGATCC 61.174 63.158 3.64 0.00 0.00 3.36
2282 2801 1.153549 GCGAAGTTGGCGAGATCCT 60.154 57.895 0.00 0.00 0.00 3.24
2283 2802 1.148759 GCGAAGTTGGCGAGATCCTC 61.149 60.000 0.00 0.00 0.00 3.71
2284 2803 0.528684 CGAAGTTGGCGAGATCCTCC 60.529 60.000 0.00 0.00 0.00 4.30
2285 2804 0.827368 GAAGTTGGCGAGATCCTCCT 59.173 55.000 0.00 0.00 0.00 3.69
2286 2805 1.208293 GAAGTTGGCGAGATCCTCCTT 59.792 52.381 0.00 0.00 0.00 3.36
2287 2806 1.280457 AGTTGGCGAGATCCTCCTTT 58.720 50.000 0.00 0.00 0.00 3.11
2288 2807 1.630878 AGTTGGCGAGATCCTCCTTTT 59.369 47.619 0.00 0.00 0.00 2.27
2289 2808 2.040412 AGTTGGCGAGATCCTCCTTTTT 59.960 45.455 0.00 0.00 0.00 1.94
2290 2809 2.403252 TGGCGAGATCCTCCTTTTTC 57.597 50.000 0.00 0.00 0.00 2.29
2291 2810 1.065418 TGGCGAGATCCTCCTTTTTCC 60.065 52.381 0.00 0.00 0.00 3.13
2292 2811 1.210722 GGCGAGATCCTCCTTTTTCCT 59.789 52.381 0.00 0.00 0.00 3.36
2293 2812 2.556257 GCGAGATCCTCCTTTTTCCTC 58.444 52.381 0.00 0.00 0.00 3.71
2294 2813 2.169561 GCGAGATCCTCCTTTTTCCTCT 59.830 50.000 0.00 0.00 0.00 3.69
2295 2814 3.739830 GCGAGATCCTCCTTTTTCCTCTC 60.740 52.174 0.00 0.00 0.00 3.20
2296 2815 3.181470 CGAGATCCTCCTTTTTCCTCTCC 60.181 52.174 0.00 0.00 0.00 3.71
2297 2816 4.037222 GAGATCCTCCTTTTTCCTCTCCT 58.963 47.826 0.00 0.00 0.00 3.69
2298 2817 3.779738 AGATCCTCCTTTTTCCTCTCCTG 59.220 47.826 0.00 0.00 0.00 3.86
2299 2818 1.630878 TCCTCCTTTTTCCTCTCCTGC 59.369 52.381 0.00 0.00 0.00 4.85
2300 2819 1.677217 CCTCCTTTTTCCTCTCCTGCG 60.677 57.143 0.00 0.00 0.00 5.18
2301 2820 1.276421 CTCCTTTTTCCTCTCCTGCGA 59.724 52.381 0.00 0.00 0.00 5.10
2302 2821 1.002087 TCCTTTTTCCTCTCCTGCGAC 59.998 52.381 0.00 0.00 0.00 5.19
2303 2822 1.443802 CTTTTTCCTCTCCTGCGACC 58.556 55.000 0.00 0.00 0.00 4.79
2304 2823 0.320421 TTTTTCCTCTCCTGCGACCG 60.320 55.000 0.00 0.00 0.00 4.79
2305 2824 2.781595 TTTTCCTCTCCTGCGACCGC 62.782 60.000 7.53 7.53 42.35 5.68
2308 2827 4.838486 CTCTCCTGCGACCGCGTC 62.838 72.222 4.92 1.63 45.51 5.19
2343 2862 4.500116 GTCGCGTCCAGCCTCCTC 62.500 72.222 5.77 0.00 44.76 3.71
2367 2886 4.423209 GCACCTCTCCCTCCCCCT 62.423 72.222 0.00 0.00 0.00 4.79
2368 2887 2.456840 CACCTCTCCCTCCCCCTT 59.543 66.667 0.00 0.00 0.00 3.95
2369 2888 1.690985 CACCTCTCCCTCCCCCTTC 60.691 68.421 0.00 0.00 0.00 3.46
2370 2889 2.040359 CCTCTCCCTCCCCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
2371 2890 2.652113 CCTCTCCCTCCCCCTTCCT 61.652 68.421 0.00 0.00 0.00 3.36
2372 2891 1.074850 CTCTCCCTCCCCCTTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
2373 2892 2.040359 CTCCCTCCCCCTTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
2374 2893 3.707189 TCCCTCCCCCTTCCTCCC 61.707 72.222 0.00 0.00 0.00 4.30
2375 2894 3.711782 CCCTCCCCCTTCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
2376 2895 2.367512 CCTCCCCCTTCCTCCCTG 60.368 72.222 0.00 0.00 0.00 4.45
2377 2896 3.093172 CTCCCCCTTCCTCCCTGC 61.093 72.222 0.00 0.00 0.00 4.85
2378 2897 4.760220 TCCCCCTTCCTCCCTGCC 62.760 72.222 0.00 0.00 0.00 4.85
2449 2968 3.744155 CCCCTGGCCTTTCCCCTC 61.744 72.222 3.32 0.00 0.00 4.30
2450 2969 2.615288 CCCTGGCCTTTCCCCTCT 60.615 66.667 3.32 0.00 0.00 3.69
2451 2970 2.684499 CCCTGGCCTTTCCCCTCTC 61.684 68.421 3.32 0.00 0.00 3.20
2452 2971 2.586792 CTGGCCTTTCCCCTCTCG 59.413 66.667 3.32 0.00 0.00 4.04
2453 2972 3.009115 TGGCCTTTCCCCTCTCGG 61.009 66.667 3.32 0.00 0.00 4.63
2462 2981 2.760385 CCCTCTCGGGTGTCCTCC 60.760 72.222 0.00 0.00 46.12 4.30
2464 2983 3.141488 CTCTCGGGTGTCCTCCGG 61.141 72.222 0.00 0.00 46.78 5.14
2498 3017 4.530857 CCCGGGCGGTGCTTCTAG 62.531 72.222 8.08 0.00 0.00 2.43
2499 3018 4.530857 CCGGGCGGTGCTTCTAGG 62.531 72.222 0.00 0.00 0.00 3.02
2537 3056 2.597510 GCAAGCGGGGGTGAACTT 60.598 61.111 0.00 0.00 0.00 2.66
2538 3057 2.626780 GCAAGCGGGGGTGAACTTC 61.627 63.158 0.00 0.00 0.00 3.01
2539 3058 1.073199 CAAGCGGGGGTGAACTTCT 59.927 57.895 0.00 0.00 0.00 2.85
2540 3059 0.323629 CAAGCGGGGGTGAACTTCTA 59.676 55.000 0.00 0.00 0.00 2.10
2541 3060 0.613777 AAGCGGGGGTGAACTTCTAG 59.386 55.000 0.00 0.00 0.00 2.43
2542 3061 0.544595 AGCGGGGGTGAACTTCTAGT 60.545 55.000 0.00 0.00 0.00 2.57
2543 3062 0.108281 GCGGGGGTGAACTTCTAGTC 60.108 60.000 0.00 0.00 0.00 2.59
2544 3063 0.172803 CGGGGGTGAACTTCTAGTCG 59.827 60.000 0.00 0.00 0.00 4.18
2545 3064 0.535797 GGGGGTGAACTTCTAGTCGG 59.464 60.000 0.00 0.00 0.00 4.79
2546 3065 0.108281 GGGGTGAACTTCTAGTCGGC 60.108 60.000 0.00 0.00 0.00 5.54
2547 3066 0.458025 GGGTGAACTTCTAGTCGGCG 60.458 60.000 0.00 0.00 0.00 6.46
2548 3067 0.458025 GGTGAACTTCTAGTCGGCGG 60.458 60.000 7.21 0.00 0.00 6.13
2549 3068 1.077089 GTGAACTTCTAGTCGGCGGC 61.077 60.000 1.71 1.71 0.00 6.53
2550 3069 1.872679 GAACTTCTAGTCGGCGGCG 60.873 63.158 27.15 27.15 0.00 6.46
2551 3070 2.539263 GAACTTCTAGTCGGCGGCGT 62.539 60.000 31.06 15.72 0.00 5.68
2552 3071 2.278013 CTTCTAGTCGGCGGCGTC 60.278 66.667 31.06 25.46 0.00 5.19
2553 3072 4.170062 TTCTAGTCGGCGGCGTCG 62.170 66.667 29.88 29.88 39.81 5.12
2613 3132 4.598894 CCGCTCGGCCCAGATCTG 62.599 72.222 16.24 16.24 0.00 2.90
2623 3142 1.445095 CCAGATCTGGGCTCTTCGG 59.555 63.158 31.14 4.70 46.81 4.30
2624 3143 1.045350 CCAGATCTGGGCTCTTCGGA 61.045 60.000 31.14 0.00 46.81 4.55
2625 3144 1.047002 CAGATCTGGGCTCTTCGGAT 58.953 55.000 15.38 0.00 33.33 4.18
2626 3145 1.000731 CAGATCTGGGCTCTTCGGATC 59.999 57.143 15.38 0.00 43.68 3.36
2627 3146 0.320050 GATCTGGGCTCTTCGGATCC 59.680 60.000 0.00 0.00 39.75 3.36
2630 3149 3.568578 GGGCTCTTCGGATCCCAT 58.431 61.111 6.06 0.00 46.66 4.00
2631 3150 1.373059 GGGCTCTTCGGATCCCATC 59.627 63.158 6.06 0.00 46.66 3.51
2632 3151 1.124477 GGGCTCTTCGGATCCCATCT 61.124 60.000 6.06 0.00 46.66 2.90
2633 3152 0.034616 GGCTCTTCGGATCCCATCTG 59.965 60.000 6.06 0.00 36.99 2.90
2634 3153 0.034616 GCTCTTCGGATCCCATCTGG 59.965 60.000 6.06 0.00 36.31 3.86
2668 3187 3.007323 GGCGGGGTGGGTCTACTT 61.007 66.667 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.368427 CGCCAGAGAAACATGAGACCTTA 60.368 47.826 0.00 0.00 0.00 2.69
1 2 2.613977 CGCCAGAGAAACATGAGACCTT 60.614 50.000 0.00 0.00 0.00 3.50
2 3 1.066573 CGCCAGAGAAACATGAGACCT 60.067 52.381 0.00 0.00 0.00 3.85
3 4 1.338200 ACGCCAGAGAAACATGAGACC 60.338 52.381 0.00 0.00 0.00 3.85
4 5 2.086054 ACGCCAGAGAAACATGAGAC 57.914 50.000 0.00 0.00 0.00 3.36
5 6 2.688507 GAACGCCAGAGAAACATGAGA 58.311 47.619 0.00 0.00 0.00 3.27
6 7 1.391485 CGAACGCCAGAGAAACATGAG 59.609 52.381 0.00 0.00 0.00 2.90
7 8 1.428448 CGAACGCCAGAGAAACATGA 58.572 50.000 0.00 0.00 0.00 3.07
8 9 0.443869 CCGAACGCCAGAGAAACATG 59.556 55.000 0.00 0.00 0.00 3.21
9 10 0.320374 TCCGAACGCCAGAGAAACAT 59.680 50.000 0.00 0.00 0.00 2.71
10 11 0.319555 CTCCGAACGCCAGAGAAACA 60.320 55.000 0.00 0.00 0.00 2.83
11 12 1.014564 CCTCCGAACGCCAGAGAAAC 61.015 60.000 0.00 0.00 0.00 2.78
12 13 1.183030 TCCTCCGAACGCCAGAGAAA 61.183 55.000 0.00 0.00 0.00 2.52
13 14 1.605451 TCCTCCGAACGCCAGAGAA 60.605 57.895 0.00 0.00 0.00 2.87
14 15 2.035155 TCCTCCGAACGCCAGAGA 59.965 61.111 0.00 0.00 0.00 3.10
15 16 2.182030 GTCCTCCGAACGCCAGAG 59.818 66.667 0.00 0.00 0.00 3.35
16 17 2.282958 AGTCCTCCGAACGCCAGA 60.283 61.111 0.00 0.00 0.00 3.86
17 18 2.125912 CAGTCCTCCGAACGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
18 19 3.691342 CCAGTCCTCCGAACGCCA 61.691 66.667 0.00 0.00 0.00 5.69
19 20 3.379445 TCCAGTCCTCCGAACGCC 61.379 66.667 0.00 0.00 0.00 5.68
20 21 2.126031 GTCCAGTCCTCCGAACGC 60.126 66.667 0.00 0.00 0.00 4.84
21 22 1.654954 ATCGTCCAGTCCTCCGAACG 61.655 60.000 0.00 0.00 32.53 3.95
22 23 0.179134 CATCGTCCAGTCCTCCGAAC 60.179 60.000 0.00 0.00 32.53 3.95
23 24 1.945354 GCATCGTCCAGTCCTCCGAA 61.945 60.000 0.00 0.00 32.53 4.30
24 25 2.415608 GCATCGTCCAGTCCTCCGA 61.416 63.158 0.00 0.00 0.00 4.55
25 26 2.105128 GCATCGTCCAGTCCTCCG 59.895 66.667 0.00 0.00 0.00 4.63
26 27 0.741221 GTTGCATCGTCCAGTCCTCC 60.741 60.000 0.00 0.00 0.00 4.30
27 28 0.247736 AGTTGCATCGTCCAGTCCTC 59.752 55.000 0.00 0.00 0.00 3.71
28 29 0.687354 AAGTTGCATCGTCCAGTCCT 59.313 50.000 0.00 0.00 0.00 3.85
29 30 1.197721 CAAAGTTGCATCGTCCAGTCC 59.802 52.381 0.00 0.00 0.00 3.85
30 31 2.601481 CAAAGTTGCATCGTCCAGTC 57.399 50.000 0.00 0.00 0.00 3.51
58 59 3.121030 CCAGCTTTGCCGTCTCCG 61.121 66.667 0.00 0.00 0.00 4.63
59 60 3.435186 GCCAGCTTTGCCGTCTCC 61.435 66.667 0.00 0.00 0.00 3.71
60 61 2.359230 AGCCAGCTTTGCCGTCTC 60.359 61.111 1.40 0.00 0.00 3.36
61 62 2.475371 ATCAGCCAGCTTTGCCGTCT 62.475 55.000 1.40 0.00 0.00 4.18
62 63 2.042831 ATCAGCCAGCTTTGCCGTC 61.043 57.895 1.40 0.00 0.00 4.79
63 64 2.034687 ATCAGCCAGCTTTGCCGT 59.965 55.556 1.40 0.00 0.00 5.68
64 65 2.488355 CATCAGCCAGCTTTGCCG 59.512 61.111 1.40 0.00 0.00 5.69
65 66 1.980772 ACCATCAGCCAGCTTTGCC 60.981 57.895 1.40 0.00 0.00 4.52
66 67 1.214589 CACCATCAGCCAGCTTTGC 59.785 57.895 0.00 0.00 0.00 3.68
67 68 1.250328 TTCACCATCAGCCAGCTTTG 58.750 50.000 0.00 0.00 0.00 2.77
68 69 1.999648 TTTCACCATCAGCCAGCTTT 58.000 45.000 0.00 0.00 0.00 3.51
69 70 1.999648 TTTTCACCATCAGCCAGCTT 58.000 45.000 0.00 0.00 0.00 3.74
70 71 1.822990 CATTTTCACCATCAGCCAGCT 59.177 47.619 0.00 0.00 0.00 4.24
71 72 1.738030 GCATTTTCACCATCAGCCAGC 60.738 52.381 0.00 0.00 0.00 4.85
72 73 1.134907 GGCATTTTCACCATCAGCCAG 60.135 52.381 0.00 0.00 40.29 4.85
73 74 0.896923 GGCATTTTCACCATCAGCCA 59.103 50.000 0.00 0.00 40.29 4.75
74 75 0.896923 TGGCATTTTCACCATCAGCC 59.103 50.000 0.00 0.00 40.93 4.85
75 76 2.933906 CAATGGCATTTTCACCATCAGC 59.066 45.455 10.65 0.00 46.04 4.26
76 77 3.196039 TCCAATGGCATTTTCACCATCAG 59.804 43.478 10.65 0.00 46.04 2.90
77 78 3.171528 TCCAATGGCATTTTCACCATCA 58.828 40.909 10.65 0.00 46.04 3.07
78 79 3.196254 ACTCCAATGGCATTTTCACCATC 59.804 43.478 10.65 0.00 46.04 3.51
80 81 2.299582 CACTCCAATGGCATTTTCACCA 59.700 45.455 10.65 0.00 41.06 4.17
81 82 2.562298 TCACTCCAATGGCATTTTCACC 59.438 45.455 10.65 0.00 0.00 4.02
82 83 3.940209 TCACTCCAATGGCATTTTCAC 57.060 42.857 10.65 0.00 0.00 3.18
83 84 4.952071 TTTCACTCCAATGGCATTTTCA 57.048 36.364 10.65 0.00 0.00 2.69
84 85 7.043192 CGATATTTTCACTCCAATGGCATTTTC 60.043 37.037 10.65 0.00 0.00 2.29
85 86 6.757947 CGATATTTTCACTCCAATGGCATTTT 59.242 34.615 10.65 0.00 0.00 1.82
86 87 6.096705 TCGATATTTTCACTCCAATGGCATTT 59.903 34.615 10.65 0.00 0.00 2.32
87 88 5.593909 TCGATATTTTCACTCCAATGGCATT 59.406 36.000 6.96 6.96 0.00 3.56
88 89 5.132502 TCGATATTTTCACTCCAATGGCAT 58.867 37.500 0.00 0.00 0.00 4.40
89 90 4.522114 TCGATATTTTCACTCCAATGGCA 58.478 39.130 0.00 0.00 0.00 4.92
90 91 5.695851 ATCGATATTTTCACTCCAATGGC 57.304 39.130 0.00 0.00 0.00 4.40
91 92 9.616634 CATTTATCGATATTTTCACTCCAATGG 57.383 33.333 5.84 0.00 0.00 3.16
95 96 8.620416 CCAACATTTATCGATATTTTCACTCCA 58.380 33.333 5.84 0.00 0.00 3.86
96 97 7.591426 GCCAACATTTATCGATATTTTCACTCC 59.409 37.037 5.84 0.00 0.00 3.85
97 98 7.321271 CGCCAACATTTATCGATATTTTCACTC 59.679 37.037 5.84 0.00 0.00 3.51
98 99 7.011950 TCGCCAACATTTATCGATATTTTCACT 59.988 33.333 5.84 0.00 0.00 3.41
99 100 7.129622 TCGCCAACATTTATCGATATTTTCAC 58.870 34.615 5.84 0.00 0.00 3.18
100 101 7.252965 TCGCCAACATTTATCGATATTTTCA 57.747 32.000 5.84 0.00 0.00 2.69
101 102 7.481798 GGATCGCCAACATTTATCGATATTTTC 59.518 37.037 5.84 0.00 39.59 2.29
102 103 7.305474 GGATCGCCAACATTTATCGATATTTT 58.695 34.615 5.84 0.00 39.59 1.82
103 104 6.402118 CGGATCGCCAACATTTATCGATATTT 60.402 38.462 5.84 0.00 39.59 1.40
104 105 5.063438 CGGATCGCCAACATTTATCGATATT 59.937 40.000 5.84 0.00 39.59 1.28
105 106 4.566759 CGGATCGCCAACATTTATCGATAT 59.433 41.667 5.84 0.00 39.59 1.63
106 107 3.924073 CGGATCGCCAACATTTATCGATA 59.076 43.478 0.00 0.00 39.59 2.92
107 108 2.736721 CGGATCGCCAACATTTATCGAT 59.263 45.455 2.16 2.16 41.79 3.59
108 109 2.131972 CGGATCGCCAACATTTATCGA 58.868 47.619 0.00 0.00 0.00 3.59
109 110 2.131972 TCGGATCGCCAACATTTATCG 58.868 47.619 0.00 0.00 0.00 2.92
126 127 2.331893 TTGCCAATCCAACGCTCGG 61.332 57.895 0.00 0.00 0.00 4.63
145 146 2.223203 GCAGCTTGATCTGGTTCATTCG 60.223 50.000 0.00 0.00 34.74 3.34
166 167 0.734889 GACGGCATGGTGAAATGGAG 59.265 55.000 0.00 0.00 0.00 3.86
167 168 0.037447 TGACGGCATGGTGAAATGGA 59.963 50.000 0.00 0.00 0.00 3.41
169 170 0.171007 GGTGACGGCATGGTGAAATG 59.829 55.000 0.00 0.00 0.00 2.32
200 337 2.288152 GGAGCTCTCTTTCTCTATGGCG 60.288 54.545 14.64 0.00 0.00 5.69
248 385 2.877300 GCTATGTGATGGCGGATTGGAT 60.877 50.000 0.00 0.00 0.00 3.41
281 418 1.609501 CTGGAGGTCGAGGTTGGGA 60.610 63.158 0.00 0.00 0.00 4.37
342 480 2.721231 CCAACACCAACCACTGCG 59.279 61.111 0.00 0.00 0.00 5.18
345 483 2.123468 GGGCCAACACCAACCACT 60.123 61.111 4.39 0.00 0.00 4.00
346 484 2.443016 TGGGCCAACACCAACCAC 60.443 61.111 2.13 0.00 34.44 4.16
400 538 9.149225 TCCATGTTCATTTTAACACATTAATGC 57.851 29.630 15.48 0.00 41.89 3.56
419 557 5.593095 CCATCTTCAGATCACATTCCATGTT 59.407 40.000 0.00 0.00 35.24 2.71
443 600 2.815478 TGACCAACAATTTCGGTTTGC 58.185 42.857 0.00 0.00 31.63 3.68
450 607 6.564328 AGACAAGACTTTGACCAACAATTTC 58.436 36.000 0.00 0.00 38.36 2.17
494 651 8.748412 CATGACACTTCTTTGGGGAAAATATAA 58.252 33.333 0.00 0.00 0.00 0.98
495 652 7.893302 ACATGACACTTCTTTGGGGAAAATATA 59.107 33.333 0.00 0.00 0.00 0.86
496 653 6.725834 ACATGACACTTCTTTGGGGAAAATAT 59.274 34.615 0.00 0.00 0.00 1.28
497 654 6.074648 ACATGACACTTCTTTGGGGAAAATA 58.925 36.000 0.00 0.00 0.00 1.40
498 655 4.901250 ACATGACACTTCTTTGGGGAAAAT 59.099 37.500 0.00 0.00 0.00 1.82
537 694 3.541996 TCAGCACTTCAGTTCACAGAA 57.458 42.857 0.00 0.00 0.00 3.02
544 701 8.947055 AATTTAAATGTTTCAGCACTTCAGTT 57.053 26.923 0.39 0.00 0.00 3.16
599 756 2.209758 TGGGGTTAACTATGATGGCCA 58.790 47.619 8.56 8.56 0.00 5.36
602 759 4.718961 CCTCTTGGGGTTAACTATGATGG 58.281 47.826 5.42 0.00 0.00 3.51
606 763 2.241176 TGGCCTCTTGGGGTTAACTATG 59.759 50.000 3.32 0.00 35.12 2.23
618 775 8.868522 TGGAATAAGATAATATTGGCCTCTTG 57.131 34.615 3.32 0.00 0.00 3.02
636 793 6.363882 TGAATGCACAGTATCCATGGAATAA 58.636 36.000 20.67 4.47 0.00 1.40
655 812 2.222976 GCAATGACTCGACAGCTGAATG 60.223 50.000 23.35 9.51 0.00 2.67
763 920 0.036858 GACCCAGACAGGCAGAAGAC 60.037 60.000 0.00 0.00 35.39 3.01
793 950 5.112220 TCACAGCACTCAAATGATCAAAC 57.888 39.130 0.00 0.00 0.00 2.93
964 1130 5.240183 TGTTCTCGGGTAACTAGGATATTCG 59.760 44.000 0.00 0.00 0.00 3.34
999 1165 5.886992 ACGTCATGAAGTCGATAACACATA 58.113 37.500 8.60 0.00 33.00 2.29
1000 1166 4.744570 ACGTCATGAAGTCGATAACACAT 58.255 39.130 8.60 0.00 33.00 3.21
1044 1210 3.891366 ACCTTTGAAATGTAACAGCTGCT 59.109 39.130 15.27 3.62 0.00 4.24
1049 1215 8.971321 CAGAATTTGACCTTTGAAATGTAACAG 58.029 33.333 0.00 0.00 0.00 3.16
1089 1256 3.485463 TCCGTTGGATCAACTTTCTGT 57.515 42.857 8.80 0.00 41.62 3.41
1111 1278 3.005554 GTTGAGCAATCTTAGCAGCTGA 58.994 45.455 20.43 0.00 37.48 4.26
1140 1307 0.521735 GTCCCCATCGTTTGAACTGC 59.478 55.000 0.00 0.00 0.00 4.40
1161 1328 6.826668 ACCATATCGAACAAATGGATGTCTA 58.173 36.000 20.05 0.00 42.36 2.59
1340 1508 4.813027 CAAAATACAAATGAGCTGCCACT 58.187 39.130 0.00 0.00 0.00 4.00
1378 1546 5.772169 CCATTCCATATCCTCCTTTTCCTTC 59.228 44.000 0.00 0.00 0.00 3.46
1583 1775 5.827267 TGCTGCAAAGCCTATGATAATACAA 59.173 36.000 0.00 0.00 0.00 2.41
1716 1908 4.857509 ACGAAGAAACTACTTGAGAGCT 57.142 40.909 0.00 0.00 0.00 4.09
1722 1914 8.761497 TGAGAAACAATACGAAGAAACTACTTG 58.239 33.333 0.00 0.00 0.00 3.16
1747 1939 1.369625 GCATCCCAAGGAACGTACTG 58.630 55.000 0.00 0.00 34.34 2.74
1748 1940 0.108329 CGCATCCCAAGGAACGTACT 60.108 55.000 0.00 0.00 34.34 2.73
1749 1941 1.087771 CCGCATCCCAAGGAACGTAC 61.088 60.000 0.00 0.00 34.82 3.67
1752 1944 2.046314 ACCGCATCCCAAGGAACG 60.046 61.111 3.22 3.22 34.34 3.95
1767 1959 5.712152 AATCTCATTTTGACACTTGGACC 57.288 39.130 0.00 0.00 0.00 4.46
1830 2022 4.525024 GACCTAAGTCTCTACTGCTGGTA 58.475 47.826 0.00 0.00 40.10 3.25
1863 2055 1.695242 TCCTACGGTTCAAGCCTTCAA 59.305 47.619 0.00 0.00 0.00 2.69
1891 2083 2.965831 TGACCATCTCCTATGGCTACAC 59.034 50.000 3.93 0.00 42.82 2.90
1898 2097 6.118170 ACTGTGAAAATGACCATCTCCTATG 58.882 40.000 0.00 0.00 0.00 2.23
1910 2109 2.542020 TGAGCGGACTGTGAAAATGA 57.458 45.000 0.00 0.00 0.00 2.57
1969 2168 6.484364 ACAATTTATTGGGCCCTTGATAAG 57.516 37.500 25.70 14.11 41.96 1.73
1980 2179 8.450964 CAGAGTACTGTGTTACAATTTATTGGG 58.549 37.037 11.78 0.00 39.26 4.12
2033 2236 3.846588 AGGGAGTAGCTTCCAAGAAATGA 59.153 43.478 6.77 0.00 39.09 2.57
2075 2594 6.193959 CACGCTTAAAGTACTGTGTCAAAAAC 59.806 38.462 0.00 0.00 0.00 2.43
2082 2601 4.049546 TCACACGCTTAAAGTACTGTGT 57.950 40.909 8.23 8.23 40.87 3.72
2087 2606 5.585500 TCACAATCACACGCTTAAAGTAC 57.415 39.130 0.00 0.00 0.00 2.73
2088 2607 5.524281 TGTTCACAATCACACGCTTAAAGTA 59.476 36.000 0.00 0.00 0.00 2.24
2092 2611 4.884458 TTGTTCACAATCACACGCTTAA 57.116 36.364 0.00 0.00 0.00 1.85
2131 2650 8.591072 CCCTCTGTCCCGTAATAATATAAGAAA 58.409 37.037 0.00 0.00 0.00 2.52
2142 2661 3.393426 TTACTCCCTCTGTCCCGTAAT 57.607 47.619 0.00 0.00 0.00 1.89
2143 2662 2.905415 TTACTCCCTCTGTCCCGTAA 57.095 50.000 0.00 0.00 0.00 3.18
2144 2663 2.242965 TGATTACTCCCTCTGTCCCGTA 59.757 50.000 0.00 0.00 0.00 4.02
2145 2664 1.006758 TGATTACTCCCTCTGTCCCGT 59.993 52.381 0.00 0.00 0.00 5.28
2146 2665 1.683917 CTGATTACTCCCTCTGTCCCG 59.316 57.143 0.00 0.00 0.00 5.14
2147 2666 2.753247 ACTGATTACTCCCTCTGTCCC 58.247 52.381 0.00 0.00 0.00 4.46
2148 2667 4.828072 AAACTGATTACTCCCTCTGTCC 57.172 45.455 0.00 0.00 0.00 4.02
2149 2668 5.552178 ACAAAACTGATTACTCCCTCTGTC 58.448 41.667 0.00 0.00 0.00 3.51
2150 2669 5.071788 TGACAAAACTGATTACTCCCTCTGT 59.928 40.000 0.00 0.00 0.00 3.41
2151 2670 5.409826 GTGACAAAACTGATTACTCCCTCTG 59.590 44.000 0.00 0.00 0.00 3.35
2152 2671 5.552178 GTGACAAAACTGATTACTCCCTCT 58.448 41.667 0.00 0.00 0.00 3.69
2153 2672 4.389077 CGTGACAAAACTGATTACTCCCTC 59.611 45.833 0.00 0.00 0.00 4.30
2154 2673 4.039973 TCGTGACAAAACTGATTACTCCCT 59.960 41.667 0.00 0.00 0.00 4.20
2155 2674 4.312443 TCGTGACAAAACTGATTACTCCC 58.688 43.478 0.00 0.00 0.00 4.30
2156 2675 4.143094 GCTCGTGACAAAACTGATTACTCC 60.143 45.833 0.00 0.00 0.00 3.85
2157 2676 4.447724 TGCTCGTGACAAAACTGATTACTC 59.552 41.667 0.00 0.00 0.00 2.59
2158 2677 4.211374 GTGCTCGTGACAAAACTGATTACT 59.789 41.667 0.00 0.00 0.00 2.24
2159 2678 4.211374 AGTGCTCGTGACAAAACTGATTAC 59.789 41.667 0.00 0.00 0.00 1.89
2160 2679 4.377021 AGTGCTCGTGACAAAACTGATTA 58.623 39.130 0.00 0.00 0.00 1.75
2161 2680 3.206150 AGTGCTCGTGACAAAACTGATT 58.794 40.909 0.00 0.00 0.00 2.57
2162 2681 2.838736 AGTGCTCGTGACAAAACTGAT 58.161 42.857 0.00 0.00 0.00 2.90
2163 2682 2.309528 AGTGCTCGTGACAAAACTGA 57.690 45.000 0.00 0.00 0.00 3.41
2164 2683 2.863740 TGTAGTGCTCGTGACAAAACTG 59.136 45.455 0.00 0.00 0.00 3.16
2165 2684 3.173668 TGTAGTGCTCGTGACAAAACT 57.826 42.857 0.00 0.00 0.00 2.66
2166 2685 3.936902 TTGTAGTGCTCGTGACAAAAC 57.063 42.857 0.00 0.00 0.00 2.43
2167 2686 4.948608 TTTTGTAGTGCTCGTGACAAAA 57.051 36.364 17.60 17.60 44.98 2.44
2168 2687 4.260990 CCATTTTGTAGTGCTCGTGACAAA 60.261 41.667 10.57 10.57 39.39 2.83
2169 2688 3.249799 CCATTTTGTAGTGCTCGTGACAA 59.750 43.478 0.00 0.00 0.00 3.18
2170 2689 2.805671 CCATTTTGTAGTGCTCGTGACA 59.194 45.455 0.00 0.00 0.00 3.58
2171 2690 3.064207 TCCATTTTGTAGTGCTCGTGAC 58.936 45.455 0.00 0.00 0.00 3.67
2172 2691 3.394674 TCCATTTTGTAGTGCTCGTGA 57.605 42.857 0.00 0.00 0.00 4.35
2173 2692 4.213270 TCTTTCCATTTTGTAGTGCTCGTG 59.787 41.667 0.00 0.00 0.00 4.35
2174 2693 4.385825 TCTTTCCATTTTGTAGTGCTCGT 58.614 39.130 0.00 0.00 0.00 4.18
2175 2694 5.356882 TTCTTTCCATTTTGTAGTGCTCG 57.643 39.130 0.00 0.00 0.00 5.03
2176 2695 8.490355 CAATTTTCTTTCCATTTTGTAGTGCTC 58.510 33.333 0.00 0.00 0.00 4.26
2177 2696 7.986889 ACAATTTTCTTTCCATTTTGTAGTGCT 59.013 29.630 0.00 0.00 0.00 4.40
2178 2697 8.141835 ACAATTTTCTTTCCATTTTGTAGTGC 57.858 30.769 0.00 0.00 0.00 4.40
2179 2698 9.919348 CAACAATTTTCTTTCCATTTTGTAGTG 57.081 29.630 0.00 0.00 0.00 2.74
2180 2699 9.883142 TCAACAATTTTCTTTCCATTTTGTAGT 57.117 25.926 0.00 0.00 0.00 2.73
2183 2702 8.882736 GTCTCAACAATTTTCTTTCCATTTTGT 58.117 29.630 0.00 0.00 0.00 2.83
2184 2703 8.881743 TGTCTCAACAATTTTCTTTCCATTTTG 58.118 29.630 0.00 0.00 30.70 2.44
2185 2704 8.882736 GTGTCTCAACAATTTTCTTTCCATTTT 58.117 29.630 0.00 0.00 37.08 1.82
2186 2705 7.495606 GGTGTCTCAACAATTTTCTTTCCATTT 59.504 33.333 0.00 0.00 37.08 2.32
2187 2706 6.986231 GGTGTCTCAACAATTTTCTTTCCATT 59.014 34.615 0.00 0.00 37.08 3.16
2188 2707 6.515832 GGTGTCTCAACAATTTTCTTTCCAT 58.484 36.000 0.00 0.00 37.08 3.41
2189 2708 5.449862 CGGTGTCTCAACAATTTTCTTTCCA 60.450 40.000 0.00 0.00 37.08 3.53
2190 2709 4.976116 CGGTGTCTCAACAATTTTCTTTCC 59.024 41.667 0.00 0.00 37.08 3.13
2191 2710 5.816919 TCGGTGTCTCAACAATTTTCTTTC 58.183 37.500 0.00 0.00 37.08 2.62
2192 2711 5.221048 CCTCGGTGTCTCAACAATTTTCTTT 60.221 40.000 0.00 0.00 37.08 2.52
2193 2712 4.275936 CCTCGGTGTCTCAACAATTTTCTT 59.724 41.667 0.00 0.00 37.08 2.52
2194 2713 3.815401 CCTCGGTGTCTCAACAATTTTCT 59.185 43.478 0.00 0.00 37.08 2.52
2195 2714 3.609409 GCCTCGGTGTCTCAACAATTTTC 60.609 47.826 0.00 0.00 37.08 2.29
2196 2715 2.293399 GCCTCGGTGTCTCAACAATTTT 59.707 45.455 0.00 0.00 37.08 1.82
2197 2716 1.880027 GCCTCGGTGTCTCAACAATTT 59.120 47.619 0.00 0.00 37.08 1.82
2198 2717 1.523758 GCCTCGGTGTCTCAACAATT 58.476 50.000 0.00 0.00 37.08 2.32
2199 2718 0.321653 GGCCTCGGTGTCTCAACAAT 60.322 55.000 0.00 0.00 37.08 2.71
2200 2719 1.070786 GGCCTCGGTGTCTCAACAA 59.929 57.895 0.00 0.00 37.08 2.83
2201 2720 2.741092 GGCCTCGGTGTCTCAACA 59.259 61.111 0.00 0.00 0.00 3.33
2202 2721 2.047179 GGGCCTCGGTGTCTCAAC 60.047 66.667 0.84 0.00 0.00 3.18
2203 2722 3.691342 CGGGCCTCGGTGTCTCAA 61.691 66.667 0.84 0.00 34.75 3.02
2204 2723 2.849096 ATACGGGCCTCGGTGTCTCA 62.849 60.000 16.44 0.00 44.45 3.27
2205 2724 1.673808 AATACGGGCCTCGGTGTCTC 61.674 60.000 16.44 0.00 44.45 3.36
2206 2725 1.673808 GAATACGGGCCTCGGTGTCT 61.674 60.000 16.44 0.00 44.45 3.41
2207 2726 1.227176 GAATACGGGCCTCGGTGTC 60.227 63.158 16.44 7.48 44.45 3.67
2208 2727 2.897972 GAATACGGGCCTCGGTGT 59.102 61.111 16.44 2.60 44.45 4.16
2209 2728 2.279252 CGAATACGGGCCTCGGTG 60.279 66.667 16.44 0.00 44.45 4.94
2219 2738 1.013596 TGATTTGGCAGCCGAATACG 58.986 50.000 24.95 0.00 37.71 3.06
2220 2739 1.065551 GGTGATTTGGCAGCCGAATAC 59.934 52.381 24.95 20.52 37.71 1.89
2221 2740 1.388547 GGTGATTTGGCAGCCGAATA 58.611 50.000 24.95 11.94 37.71 1.75
2222 2741 1.322538 GGGTGATTTGGCAGCCGAAT 61.323 55.000 25.14 25.14 45.32 3.34
2223 2742 1.976474 GGGTGATTTGGCAGCCGAA 60.976 57.895 17.08 17.08 45.32 4.30
2224 2743 2.361104 GGGTGATTTGGCAGCCGA 60.361 61.111 7.03 0.62 45.32 5.54
2227 2746 3.451894 CCGGGGTGATTTGGCAGC 61.452 66.667 0.00 0.00 35.63 5.25
2228 2747 3.451894 GCCGGGGTGATTTGGCAG 61.452 66.667 2.18 0.00 46.76 4.85
2231 2750 2.608970 ATCGAGCCGGGGTGATTTGG 62.609 60.000 2.05 0.00 0.00 3.28
2232 2751 0.748005 AATCGAGCCGGGGTGATTTG 60.748 55.000 2.05 0.00 0.00 2.32
2233 2752 0.034477 AAATCGAGCCGGGGTGATTT 60.034 50.000 20.74 20.74 36.50 2.17
2234 2753 0.748005 CAAATCGAGCCGGGGTGATT 60.748 55.000 2.05 10.38 32.69 2.57
2235 2754 1.153168 CAAATCGAGCCGGGGTGAT 60.153 57.895 2.05 4.42 0.00 3.06
2236 2755 1.832719 TTCAAATCGAGCCGGGGTGA 61.833 55.000 2.05 1.91 0.00 4.02
2237 2756 0.958382 TTTCAAATCGAGCCGGGGTG 60.958 55.000 2.05 0.00 0.00 4.61
2238 2757 0.958876 GTTTCAAATCGAGCCGGGGT 60.959 55.000 2.18 0.00 0.00 4.95
2239 2758 0.676782 AGTTTCAAATCGAGCCGGGG 60.677 55.000 2.18 0.00 0.00 5.73
2240 2759 1.130561 GAAGTTTCAAATCGAGCCGGG 59.869 52.381 2.18 0.00 0.00 5.73
2241 2760 1.804151 TGAAGTTTCAAATCGAGCCGG 59.196 47.619 0.00 0.00 33.55 6.13
2242 2761 3.419915 CATGAAGTTTCAAATCGAGCCG 58.580 45.455 0.00 0.00 41.13 5.52
2243 2762 3.762779 CCATGAAGTTTCAAATCGAGCC 58.237 45.455 0.00 0.00 41.13 4.70
2244 2763 3.174375 GCCATGAAGTTTCAAATCGAGC 58.826 45.455 0.00 0.00 41.13 5.03
2245 2764 3.125146 TCGCCATGAAGTTTCAAATCGAG 59.875 43.478 0.00 0.00 41.13 4.04
2246 2765 3.070748 TCGCCATGAAGTTTCAAATCGA 58.929 40.909 0.00 5.41 41.13 3.59
2247 2766 3.469899 TCGCCATGAAGTTTCAAATCG 57.530 42.857 0.00 3.35 41.13 3.34
2258 2777 1.298157 CTCGCCAACTTCGCCATGAA 61.298 55.000 0.00 0.00 34.74 2.57
2259 2778 1.741401 CTCGCCAACTTCGCCATGA 60.741 57.895 0.00 0.00 0.00 3.07
2260 2779 1.091771 ATCTCGCCAACTTCGCCATG 61.092 55.000 0.00 0.00 0.00 3.66
2261 2780 0.811616 GATCTCGCCAACTTCGCCAT 60.812 55.000 0.00 0.00 0.00 4.40
2262 2781 1.447838 GATCTCGCCAACTTCGCCA 60.448 57.895 0.00 0.00 0.00 5.69
2263 2782 2.174319 GGATCTCGCCAACTTCGCC 61.174 63.158 0.00 0.00 0.00 5.54
2264 2783 1.148759 GAGGATCTCGCCAACTTCGC 61.149 60.000 0.00 0.00 0.00 4.70
2265 2784 0.528684 GGAGGATCTCGCCAACTTCG 60.529 60.000 0.00 0.00 35.24 3.79
2266 2785 0.827368 AGGAGGATCTCGCCAACTTC 59.173 55.000 6.71 0.00 37.84 3.01
2267 2786 1.280457 AAGGAGGATCTCGCCAACTT 58.720 50.000 6.71 0.00 37.84 2.66
2268 2787 1.280457 AAAGGAGGATCTCGCCAACT 58.720 50.000 6.71 0.00 37.84 3.16
2269 2788 2.115343 AAAAGGAGGATCTCGCCAAC 57.885 50.000 6.71 0.00 37.84 3.77
2270 2789 2.618045 GGAAAAAGGAGGATCTCGCCAA 60.618 50.000 6.71 0.00 37.84 4.52
2271 2790 1.065418 GGAAAAAGGAGGATCTCGCCA 60.065 52.381 6.71 0.00 37.84 5.69
2272 2791 1.210722 AGGAAAAAGGAGGATCTCGCC 59.789 52.381 0.00 0.00 35.38 5.54
2273 2792 2.169561 AGAGGAAAAAGGAGGATCTCGC 59.830 50.000 0.00 0.00 33.73 5.03
2274 2793 3.181470 GGAGAGGAAAAAGGAGGATCTCG 60.181 52.174 0.00 0.00 34.01 4.04
2275 2794 4.037222 AGGAGAGGAAAAAGGAGGATCTC 58.963 47.826 0.00 0.00 33.73 2.75
2276 2795 3.779738 CAGGAGAGGAAAAAGGAGGATCT 59.220 47.826 0.00 0.00 33.73 2.75
2277 2796 3.684130 GCAGGAGAGGAAAAAGGAGGATC 60.684 52.174 0.00 0.00 0.00 3.36
2278 2797 2.240921 GCAGGAGAGGAAAAAGGAGGAT 59.759 50.000 0.00 0.00 0.00 3.24
2279 2798 1.630878 GCAGGAGAGGAAAAAGGAGGA 59.369 52.381 0.00 0.00 0.00 3.71
2280 2799 1.677217 CGCAGGAGAGGAAAAAGGAGG 60.677 57.143 0.00 0.00 0.00 4.30
2281 2800 1.276421 TCGCAGGAGAGGAAAAAGGAG 59.724 52.381 0.00 0.00 0.00 3.69
2282 2801 1.002087 GTCGCAGGAGAGGAAAAAGGA 59.998 52.381 0.00 0.00 0.00 3.36
2283 2802 1.443802 GTCGCAGGAGAGGAAAAAGG 58.556 55.000 0.00 0.00 0.00 3.11
2284 2803 1.443802 GGTCGCAGGAGAGGAAAAAG 58.556 55.000 0.00 0.00 0.00 2.27
2285 2804 0.320421 CGGTCGCAGGAGAGGAAAAA 60.320 55.000 0.00 0.00 0.00 1.94
2286 2805 1.292223 CGGTCGCAGGAGAGGAAAA 59.708 57.895 0.00 0.00 0.00 2.29
2287 2806 2.970639 CGGTCGCAGGAGAGGAAA 59.029 61.111 0.00 0.00 0.00 3.13
2288 2807 3.760035 GCGGTCGCAGGAGAGGAA 61.760 66.667 10.67 0.00 41.49 3.36
2291 2810 4.838486 GACGCGGTCGCAGGAGAG 62.838 72.222 12.47 0.49 42.06 3.20
2326 2845 4.500116 GAGGAGGCTGGACGCGAC 62.500 72.222 15.93 6.56 40.44 5.19
2350 2869 3.952799 AAGGGGGAGGGAGAGGTGC 62.953 68.421 0.00 0.00 0.00 5.01
2351 2870 1.690985 GAAGGGGGAGGGAGAGGTG 60.691 68.421 0.00 0.00 0.00 4.00
2352 2871 2.788589 GAAGGGGGAGGGAGAGGT 59.211 66.667 0.00 0.00 0.00 3.85
2353 2872 2.040359 GGAAGGGGGAGGGAGAGG 60.040 72.222 0.00 0.00 0.00 3.69
2354 2873 1.074850 GAGGAAGGGGGAGGGAGAG 60.075 68.421 0.00 0.00 0.00 3.20
2355 2874 2.647949 GGAGGAAGGGGGAGGGAGA 61.648 68.421 0.00 0.00 0.00 3.71
2356 2875 2.040359 GGAGGAAGGGGGAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
2357 2876 3.707189 GGGAGGAAGGGGGAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
2358 2877 3.711782 AGGGAGGAAGGGGGAGGG 61.712 72.222 0.00 0.00 0.00 4.30
2359 2878 2.367512 CAGGGAGGAAGGGGGAGG 60.368 72.222 0.00 0.00 0.00 4.30
2360 2879 3.093172 GCAGGGAGGAAGGGGGAG 61.093 72.222 0.00 0.00 0.00 4.30
2361 2880 4.760220 GGCAGGGAGGAAGGGGGA 62.760 72.222 0.00 0.00 0.00 4.81
2432 2951 3.744155 GAGGGGAAAGGCCAGGGG 61.744 72.222 5.01 0.00 38.95 4.79
2433 2952 2.615288 AGAGGGGAAAGGCCAGGG 60.615 66.667 5.01 0.00 38.95 4.45
2434 2953 3.002371 GAGAGGGGAAAGGCCAGG 58.998 66.667 5.01 0.00 38.95 4.45
2435 2954 2.586792 CGAGAGGGGAAAGGCCAG 59.413 66.667 5.01 0.00 38.95 4.85
2481 3000 4.530857 CTAGAAGCACCGCCCGGG 62.531 72.222 19.09 19.09 43.62 5.73
2482 3001 4.530857 CCTAGAAGCACCGCCCGG 62.531 72.222 4.96 4.96 42.03 5.73
2520 3039 2.597510 AAGTTCACCCCCGCTTGC 60.598 61.111 0.00 0.00 0.00 4.01
2521 3040 0.323629 TAGAAGTTCACCCCCGCTTG 59.676 55.000 5.50 0.00 0.00 4.01
2522 3041 0.613777 CTAGAAGTTCACCCCCGCTT 59.386 55.000 5.50 0.00 0.00 4.68
2523 3042 0.544595 ACTAGAAGTTCACCCCCGCT 60.545 55.000 5.50 0.00 0.00 5.52
2524 3043 0.108281 GACTAGAAGTTCACCCCCGC 60.108 60.000 5.50 0.00 0.00 6.13
2525 3044 0.172803 CGACTAGAAGTTCACCCCCG 59.827 60.000 5.50 0.00 0.00 5.73
2526 3045 0.535797 CCGACTAGAAGTTCACCCCC 59.464 60.000 5.50 0.00 0.00 5.40
2527 3046 0.108281 GCCGACTAGAAGTTCACCCC 60.108 60.000 5.50 0.00 0.00 4.95
2528 3047 0.458025 CGCCGACTAGAAGTTCACCC 60.458 60.000 5.50 0.00 0.00 4.61
2529 3048 0.458025 CCGCCGACTAGAAGTTCACC 60.458 60.000 5.50 0.00 0.00 4.02
2530 3049 1.077089 GCCGCCGACTAGAAGTTCAC 61.077 60.000 5.50 0.00 0.00 3.18
2531 3050 1.214589 GCCGCCGACTAGAAGTTCA 59.785 57.895 5.50 0.00 0.00 3.18
2532 3051 1.872679 CGCCGCCGACTAGAAGTTC 60.873 63.158 0.00 0.00 36.29 3.01
2533 3052 2.181021 CGCCGCCGACTAGAAGTT 59.819 61.111 0.00 0.00 36.29 2.66
2534 3053 3.048941 GACGCCGCCGACTAGAAGT 62.049 63.158 0.00 0.00 38.29 3.01
2535 3054 2.278013 GACGCCGCCGACTAGAAG 60.278 66.667 0.00 0.00 38.29 2.85
2536 3055 4.170062 CGACGCCGCCGACTAGAA 62.170 66.667 0.00 0.00 38.29 2.10
2596 3115 4.598894 CAGATCTGGGCCGAGCGG 62.599 72.222 15.38 4.20 38.57 5.52
2597 3116 4.598894 CCAGATCTGGGCCGAGCG 62.599 72.222 31.14 5.44 46.81 5.03
2606 3125 1.000731 GATCCGAAGAGCCCAGATCTG 59.999 57.143 16.24 16.24 32.42 2.90
2607 3126 1.337118 GATCCGAAGAGCCCAGATCT 58.663 55.000 0.00 0.00 32.42 2.75
2608 3127 0.320050 GGATCCGAAGAGCCCAGATC 59.680 60.000 0.00 0.00 43.18 2.75
2609 3128 2.446512 GGATCCGAAGAGCCCAGAT 58.553 57.895 0.00 0.00 43.18 2.90
2610 3129 3.956377 GGATCCGAAGAGCCCAGA 58.044 61.111 0.00 0.00 43.18 3.86
2615 3134 0.034616 CCAGATGGGATCCGAAGAGC 59.965 60.000 5.45 0.00 40.01 4.09
2651 3170 3.007323 AAGTAGACCCACCCCGCC 61.007 66.667 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.