Multiple sequence alignment - TraesCS4D01G196500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G196500 chr4D 100.000 3444 0 0 1 3444 341388061 341391504 0.000000e+00 6360.0
1 TraesCS4D01G196500 chr4D 96.386 166 6 0 370 535 341388263 341388428 1.220000e-69 274.0
2 TraesCS4D01G196500 chr4D 96.386 166 6 0 203 368 341388430 341388595 1.220000e-69 274.0
3 TraesCS4D01G196500 chr2A 98.409 1949 26 1 774 2717 657131000 657129052 0.000000e+00 3422.0
4 TraesCS4D01G196500 chr2A 96.515 373 10 2 1 372 657131355 657130985 6.320000e-172 614.0
5 TraesCS4D01G196500 chr2A 96.429 168 5 1 370 536 657131155 657130988 3.390000e-70 276.0
6 TraesCS4D01G196500 chr2A 85.222 203 27 3 553 753 776173037 776173238 4.510000e-49 206.0
7 TraesCS4D01G196500 chr4A 96.091 1970 47 9 774 2717 125469804 125467839 0.000000e+00 3184.0
8 TraesCS4D01G196500 chr4A 94.828 174 9 0 1 174 125470096 125469923 4.380000e-69 272.0
9 TraesCS4D01G196500 chr4B 95.513 1939 51 10 774 2688 423036988 423038914 0.000000e+00 3066.0
10 TraesCS4D01G196500 chr4B 91.860 172 5 3 112 281 423035624 423035788 7.430000e-57 231.0
11 TraesCS4D01G196500 chr4B 94.215 121 7 0 1 121 423018076 423018196 5.870000e-43 185.0
12 TraesCS4D01G196500 chr3D 97.131 732 17 2 2715 3443 105160413 105161143 0.000000e+00 1232.0
13 TraesCS4D01G196500 chr3D 96.448 732 22 2 2715 3443 105192294 105193024 0.000000e+00 1205.0
14 TraesCS4D01G196500 chr3D 96.448 732 22 2 2715 3443 105246896 105247626 0.000000e+00 1205.0
15 TraesCS4D01G196500 chr3D 95.765 732 27 2 2715 3443 105274487 105275217 0.000000e+00 1177.0
16 TraesCS4D01G196500 chr3D 94.161 137 8 0 534 670 100400515 100400651 3.480000e-50 209.0
17 TraesCS4D01G196500 chr5B 96.571 729 25 0 2716 3444 538034110 538033382 0.000000e+00 1208.0
18 TraesCS4D01G196500 chr3B 95.753 730 31 0 2715 3444 53592617 53591888 0.000000e+00 1177.0
19 TraesCS4D01G196500 chr3B 91.509 106 8 1 670 774 432333506 432333401 9.960000e-31 145.0
20 TraesCS4D01G196500 chr6A 95.610 729 32 0 2716 3444 20498823 20499551 0.000000e+00 1170.0
21 TraesCS4D01G196500 chr7B 95.232 734 33 2 2711 3444 530612321 530611590 0.000000e+00 1160.0
22 TraesCS4D01G196500 chr7B 92.308 104 6 2 670 772 691230389 691230491 2.770000e-31 147.0
23 TraesCS4D01G196500 chr7B 90.566 106 9 1 670 774 717326208 717326313 4.630000e-29 139.0
24 TraesCS4D01G196500 chr7B 90.385 104 9 1 670 773 59650171 59650273 6.000000e-28 135.0
25 TraesCS4D01G196500 chr1B 95.212 731 34 1 2714 3444 108844805 108845534 0.000000e+00 1155.0
26 TraesCS4D01G196500 chr7A 87.755 245 22 3 537 773 39135606 39135850 2.620000e-71 279.0
27 TraesCS4D01G196500 chr5D 94.928 138 7 0 533 670 240835451 240835588 2.080000e-52 217.0
28 TraesCS4D01G196500 chr5D 94.737 133 7 0 538 670 118272900 118272768 1.250000e-49 207.0
29 TraesCS4D01G196500 chr5D 84.848 99 12 3 977 1073 410562478 410562575 2.830000e-16 97.1
30 TraesCS4D01G196500 chr3A 94.203 138 8 0 533 670 587890605 587890742 9.680000e-51 211.0
31 TraesCS4D01G196500 chr3A 93.578 109 5 2 670 777 718007589 718007482 9.890000e-36 161.0
32 TraesCS4D01G196500 chr7D 94.776 134 7 0 537 670 109361498 109361631 3.480000e-50 209.0
33 TraesCS4D01G196500 chr5A 94.776 134 7 0 537 670 601156328 601156195 3.480000e-50 209.0
34 TraesCS4D01G196500 chr6D 83.105 219 30 6 539 753 383702847 383703062 3.510000e-45 193.0
35 TraesCS4D01G196500 chr1A 90.566 106 9 1 670 774 513105495 513105390 4.630000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G196500 chr4D 341388061 341391504 3443 False 2302.666667 6360 97.590667 1 3444 3 chr4D.!!$F1 3443
1 TraesCS4D01G196500 chr2A 657129052 657131355 2303 True 1437.333333 3422 97.117667 1 2717 3 chr2A.!!$R1 2716
2 TraesCS4D01G196500 chr4A 125467839 125470096 2257 True 1728.000000 3184 95.459500 1 2717 2 chr4A.!!$R1 2716
3 TraesCS4D01G196500 chr4B 423035624 423038914 3290 False 1648.500000 3066 93.686500 112 2688 2 chr4B.!!$F2 2576
4 TraesCS4D01G196500 chr3D 105160413 105161143 730 False 1232.000000 1232 97.131000 2715 3443 1 chr3D.!!$F2 728
5 TraesCS4D01G196500 chr3D 105192294 105193024 730 False 1205.000000 1205 96.448000 2715 3443 1 chr3D.!!$F3 728
6 TraesCS4D01G196500 chr3D 105246896 105247626 730 False 1205.000000 1205 96.448000 2715 3443 1 chr3D.!!$F4 728
7 TraesCS4D01G196500 chr3D 105274487 105275217 730 False 1177.000000 1177 95.765000 2715 3443 1 chr3D.!!$F5 728
8 TraesCS4D01G196500 chr5B 538033382 538034110 728 True 1208.000000 1208 96.571000 2716 3444 1 chr5B.!!$R1 728
9 TraesCS4D01G196500 chr3B 53591888 53592617 729 True 1177.000000 1177 95.753000 2715 3444 1 chr3B.!!$R1 729
10 TraesCS4D01G196500 chr6A 20498823 20499551 728 False 1170.000000 1170 95.610000 2716 3444 1 chr6A.!!$F1 728
11 TraesCS4D01G196500 chr7B 530611590 530612321 731 True 1160.000000 1160 95.232000 2711 3444 1 chr7B.!!$R1 733
12 TraesCS4D01G196500 chr1B 108844805 108845534 729 False 1155.000000 1155 95.212000 2714 3444 1 chr1B.!!$F1 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 1777 0.037590 ACACGTACACCCTACCCGTA 59.962 55.0 0.00 0.00 0.00 4.02 F
649 1802 0.038159 ACCTTCGAAAGACTGAGCCG 60.038 55.0 0.00 0.00 41.84 5.52 F
654 1807 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.0 31.54 16.21 0.00 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 2900 2.345341 GGAATGAAAGCGCCAAAAATCG 59.655 45.455 2.29 0.0 0.00 3.34 R
2416 3609 3.057946 CAGTAGCAACTTTCTTCCTTGCC 60.058 47.826 0.00 0.0 41.05 4.52 R
2462 3655 7.025963 GTGCCAGATGATCAAAAAGTTAAGAG 58.974 38.462 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 0.924823 AAGAGCCCATTCCAGCTGAT 59.075 50.000 17.39 0.00 40.11 2.90
279 282 3.828451 ACAATGCTTAGTTGGATGTGCTT 59.172 39.130 0.00 0.00 0.00 3.91
280 283 4.281688 ACAATGCTTAGTTGGATGTGCTTT 59.718 37.500 0.00 0.00 0.00 3.51
281 284 5.221501 ACAATGCTTAGTTGGATGTGCTTTT 60.222 36.000 0.00 0.00 0.00 2.27
282 285 4.935352 TGCTTAGTTGGATGTGCTTTTT 57.065 36.364 0.00 0.00 0.00 1.94
303 306 2.389962 TTACGGGTAGTTGGATGTGC 57.610 50.000 0.00 0.00 0.00 4.57
304 307 1.563924 TACGGGTAGTTGGATGTGCT 58.436 50.000 0.00 0.00 0.00 4.40
305 308 0.690762 ACGGGTAGTTGGATGTGCTT 59.309 50.000 0.00 0.00 0.00 3.91
306 309 1.073284 ACGGGTAGTTGGATGTGCTTT 59.927 47.619 0.00 0.00 0.00 3.51
307 310 1.737793 CGGGTAGTTGGATGTGCTTTC 59.262 52.381 0.00 0.00 0.00 2.62
308 311 1.737793 GGGTAGTTGGATGTGCTTTCG 59.262 52.381 0.00 0.00 0.00 3.46
309 312 2.423577 GGTAGTTGGATGTGCTTTCGT 58.576 47.619 0.00 0.00 0.00 3.85
310 313 2.159627 GGTAGTTGGATGTGCTTTCGTG 59.840 50.000 0.00 0.00 0.00 4.35
311 314 1.967319 AGTTGGATGTGCTTTCGTGT 58.033 45.000 0.00 0.00 0.00 4.49
312 315 2.297701 AGTTGGATGTGCTTTCGTGTT 58.702 42.857 0.00 0.00 0.00 3.32
313 316 2.687935 AGTTGGATGTGCTTTCGTGTTT 59.312 40.909 0.00 0.00 0.00 2.83
314 317 3.130340 AGTTGGATGTGCTTTCGTGTTTT 59.870 39.130 0.00 0.00 0.00 2.43
315 318 3.791973 TGGATGTGCTTTCGTGTTTTT 57.208 38.095 0.00 0.00 0.00 1.94
316 319 4.902443 TGGATGTGCTTTCGTGTTTTTA 57.098 36.364 0.00 0.00 0.00 1.52
317 320 4.602995 TGGATGTGCTTTCGTGTTTTTAC 58.397 39.130 0.00 0.00 0.00 2.01
318 321 4.096532 TGGATGTGCTTTCGTGTTTTTACA 59.903 37.500 0.00 0.00 0.00 2.41
319 322 4.675114 GGATGTGCTTTCGTGTTTTTACAG 59.325 41.667 0.00 0.00 0.00 2.74
320 323 4.022464 TGTGCTTTCGTGTTTTTACAGG 57.978 40.909 0.00 0.00 0.00 4.00
321 324 3.440872 TGTGCTTTCGTGTTTTTACAGGT 59.559 39.130 0.00 0.00 0.00 4.00
322 325 3.789224 GTGCTTTCGTGTTTTTACAGGTG 59.211 43.478 0.00 0.00 0.00 4.00
323 326 3.440872 TGCTTTCGTGTTTTTACAGGTGT 59.559 39.130 0.00 0.00 0.00 4.16
324 327 4.634883 TGCTTTCGTGTTTTTACAGGTGTA 59.365 37.500 0.00 0.00 0.00 2.90
325 328 5.123502 TGCTTTCGTGTTTTTACAGGTGTAA 59.876 36.000 0.00 0.00 38.60 2.41
326 329 5.679792 GCTTTCGTGTTTTTACAGGTGTAAG 59.320 40.000 2.95 0.00 41.03 2.34
327 330 6.676213 GCTTTCGTGTTTTTACAGGTGTAAGT 60.676 38.462 2.95 0.00 41.03 2.24
328 331 6.740411 TTCGTGTTTTTACAGGTGTAAGTT 57.260 33.333 2.95 0.00 41.03 2.66
329 332 6.740411 TCGTGTTTTTACAGGTGTAAGTTT 57.260 33.333 2.95 0.00 41.03 2.66
330 333 7.143514 TCGTGTTTTTACAGGTGTAAGTTTT 57.856 32.000 2.95 0.00 41.03 2.43
331 334 7.242783 TCGTGTTTTTACAGGTGTAAGTTTTC 58.757 34.615 2.95 0.00 41.03 2.29
332 335 7.119553 TCGTGTTTTTACAGGTGTAAGTTTTCT 59.880 33.333 2.95 0.00 41.03 2.52
333 336 7.427318 CGTGTTTTTACAGGTGTAAGTTTTCTC 59.573 37.037 2.95 0.00 41.03 2.87
334 337 7.699391 GTGTTTTTACAGGTGTAAGTTTTCTCC 59.301 37.037 2.95 0.00 41.03 3.71
335 338 7.393796 TGTTTTTACAGGTGTAAGTTTTCTCCA 59.606 33.333 2.95 0.00 41.03 3.86
336 339 8.410912 GTTTTTACAGGTGTAAGTTTTCTCCAT 58.589 33.333 2.95 0.00 41.03 3.41
337 340 7.504924 TTTACAGGTGTAAGTTTTCTCCATG 57.495 36.000 2.95 0.00 41.03 3.66
338 341 3.821033 ACAGGTGTAAGTTTTCTCCATGC 59.179 43.478 0.00 0.00 0.00 4.06
339 342 3.074412 AGGTGTAAGTTTTCTCCATGCG 58.926 45.455 0.00 0.00 0.00 4.73
340 343 2.161609 GGTGTAAGTTTTCTCCATGCGG 59.838 50.000 0.00 0.00 0.00 5.69
341 344 3.071479 GTGTAAGTTTTCTCCATGCGGA 58.929 45.455 0.00 0.00 39.79 5.54
342 345 3.500680 GTGTAAGTTTTCTCCATGCGGAA 59.499 43.478 0.00 0.00 42.21 4.30
343 346 3.751175 TGTAAGTTTTCTCCATGCGGAAG 59.249 43.478 0.00 0.00 42.21 3.46
344 347 2.859165 AGTTTTCTCCATGCGGAAGA 57.141 45.000 0.00 0.00 42.21 2.87
345 348 3.140325 AGTTTTCTCCATGCGGAAGAA 57.860 42.857 0.00 0.00 42.21 2.52
346 349 3.486383 AGTTTTCTCCATGCGGAAGAAA 58.514 40.909 0.00 0.00 42.21 2.52
347 350 3.888930 AGTTTTCTCCATGCGGAAGAAAA 59.111 39.130 9.98 9.98 42.21 2.29
348 351 4.340950 AGTTTTCTCCATGCGGAAGAAAAA 59.659 37.500 14.20 6.50 42.93 1.94
349 352 4.503741 TTTCTCCATGCGGAAGAAAAAG 57.496 40.909 0.39 0.00 42.21 2.27
350 353 3.417069 TCTCCATGCGGAAGAAAAAGA 57.583 42.857 0.00 0.00 42.21 2.52
351 354 3.338249 TCTCCATGCGGAAGAAAAAGAG 58.662 45.455 0.00 0.00 42.21 2.85
352 355 3.007940 TCTCCATGCGGAAGAAAAAGAGA 59.992 43.478 0.00 0.00 42.21 3.10
353 356 3.074412 TCCATGCGGAAGAAAAAGAGAC 58.926 45.455 0.00 0.00 38.83 3.36
354 357 2.162408 CCATGCGGAAGAAAAAGAGACC 59.838 50.000 0.00 0.00 0.00 3.85
355 358 2.930826 TGCGGAAGAAAAAGAGACCT 57.069 45.000 0.00 0.00 0.00 3.85
356 359 2.494059 TGCGGAAGAAAAAGAGACCTG 58.506 47.619 0.00 0.00 0.00 4.00
357 360 1.197949 GCGGAAGAAAAAGAGACCTGC 59.802 52.381 0.00 0.00 0.00 4.85
358 361 1.807142 CGGAAGAAAAAGAGACCTGCC 59.193 52.381 0.00 0.00 0.00 4.85
359 362 1.807142 GGAAGAAAAAGAGACCTGCCG 59.193 52.381 0.00 0.00 0.00 5.69
360 363 2.550208 GGAAGAAAAAGAGACCTGCCGA 60.550 50.000 0.00 0.00 0.00 5.54
361 364 2.930826 AGAAAAAGAGACCTGCCGAA 57.069 45.000 0.00 0.00 0.00 4.30
362 365 3.208747 AGAAAAAGAGACCTGCCGAAA 57.791 42.857 0.00 0.00 0.00 3.46
363 366 3.551846 AGAAAAAGAGACCTGCCGAAAA 58.448 40.909 0.00 0.00 0.00 2.29
364 367 4.145052 AGAAAAAGAGACCTGCCGAAAAT 58.855 39.130 0.00 0.00 0.00 1.82
365 368 3.923017 AAAAGAGACCTGCCGAAAATG 57.077 42.857 0.00 0.00 0.00 2.32
366 369 1.826385 AAGAGACCTGCCGAAAATGG 58.174 50.000 0.00 0.00 0.00 3.16
376 379 2.524569 CCGAAAATGGCACCTTGTTT 57.475 45.000 0.00 0.00 0.00 2.83
377 380 2.832563 CCGAAAATGGCACCTTGTTTT 58.167 42.857 0.00 0.00 0.00 2.43
378 381 3.983741 CCGAAAATGGCACCTTGTTTTA 58.016 40.909 0.00 0.00 0.00 1.52
379 382 4.372656 CCGAAAATGGCACCTTGTTTTAA 58.627 39.130 0.00 0.00 0.00 1.52
380 383 4.811557 CCGAAAATGGCACCTTGTTTTAAA 59.188 37.500 0.00 0.00 0.00 1.52
381 384 5.468409 CCGAAAATGGCACCTTGTTTTAAAT 59.532 36.000 0.00 0.00 0.00 1.40
382 385 6.647067 CCGAAAATGGCACCTTGTTTTAAATA 59.353 34.615 0.00 0.00 0.00 1.40
383 386 7.171678 CCGAAAATGGCACCTTGTTTTAAATAA 59.828 33.333 0.00 0.00 0.00 1.40
384 387 8.552034 CGAAAATGGCACCTTGTTTTAAATAAA 58.448 29.630 0.00 0.00 0.00 1.40
404 407 9.448438 AAATAAAAATAAGGCATGAGAAAACCC 57.552 29.630 0.00 0.00 0.00 4.11
405 408 5.420725 AAAATAAGGCATGAGAAAACCCC 57.579 39.130 0.00 0.00 0.00 4.95
406 409 4.337264 AATAAGGCATGAGAAAACCCCT 57.663 40.909 0.00 0.00 0.00 4.79
407 410 2.702270 AAGGCATGAGAAAACCCCTT 57.298 45.000 0.00 0.00 0.00 3.95
408 411 2.702270 AGGCATGAGAAAACCCCTTT 57.298 45.000 0.00 0.00 0.00 3.11
409 412 2.529632 AGGCATGAGAAAACCCCTTTC 58.470 47.619 0.00 0.00 43.36 2.62
444 447 7.843490 TTAGACAATACTTAGTTGGATGTGC 57.157 36.000 0.00 0.00 0.00 4.57
523 1676 4.253685 CATGCGGAAGAAAAAGAGACCTA 58.746 43.478 0.00 0.00 0.00 3.08
524 1677 4.553330 TGCGGAAGAAAAAGAGACCTAT 57.447 40.909 0.00 0.00 0.00 2.57
525 1678 4.906618 TGCGGAAGAAAAAGAGACCTATT 58.093 39.130 0.00 0.00 0.00 1.73
526 1679 4.695455 TGCGGAAGAAAAAGAGACCTATTG 59.305 41.667 0.00 0.00 0.00 1.90
527 1680 4.935808 GCGGAAGAAAAAGAGACCTATTGA 59.064 41.667 0.00 0.00 0.00 2.57
528 1681 5.411669 GCGGAAGAAAAAGAGACCTATTGAA 59.588 40.000 0.00 0.00 0.00 2.69
529 1682 6.072673 GCGGAAGAAAAAGAGACCTATTGAAA 60.073 38.462 0.00 0.00 0.00 2.69
530 1683 7.521585 GCGGAAGAAAAAGAGACCTATTGAAAA 60.522 37.037 0.00 0.00 0.00 2.29
531 1684 8.515414 CGGAAGAAAAAGAGACCTATTGAAAAT 58.485 33.333 0.00 0.00 0.00 1.82
532 1685 9.631452 GGAAGAAAAAGAGACCTATTGAAAATG 57.369 33.333 0.00 0.00 0.00 2.32
533 1686 9.631452 GAAGAAAAAGAGACCTATTGAAAATGG 57.369 33.333 0.00 0.00 0.00 3.16
534 1687 7.606349 AGAAAAAGAGACCTATTGAAAATGGC 58.394 34.615 0.00 0.00 0.00 4.40
535 1688 5.567138 AAAGAGACCTATTGAAAATGGCG 57.433 39.130 0.00 0.00 0.00 5.69
536 1689 4.222124 AGAGACCTATTGAAAATGGCGT 57.778 40.909 0.00 0.00 0.00 5.68
537 1690 4.589908 AGAGACCTATTGAAAATGGCGTT 58.410 39.130 0.00 0.00 0.00 4.84
538 1691 5.010282 AGAGACCTATTGAAAATGGCGTTT 58.990 37.500 0.00 0.00 0.00 3.60
539 1692 5.476945 AGAGACCTATTGAAAATGGCGTTTT 59.523 36.000 16.87 16.87 42.56 2.43
540 1693 6.015434 AGAGACCTATTGAAAATGGCGTTTTT 60.015 34.615 17.81 8.14 40.04 1.94
564 1717 5.801350 TTAGCATCAATACAGACACAAGC 57.199 39.130 0.00 0.00 0.00 4.01
565 1718 2.674852 AGCATCAATACAGACACAAGCG 59.325 45.455 0.00 0.00 0.00 4.68
566 1719 2.789092 GCATCAATACAGACACAAGCGC 60.789 50.000 0.00 0.00 0.00 5.92
567 1720 2.455674 TCAATACAGACACAAGCGCT 57.544 45.000 2.64 2.64 0.00 5.92
568 1721 2.766313 TCAATACAGACACAAGCGCTT 58.234 42.857 18.98 18.98 0.00 4.68
569 1722 3.920446 TCAATACAGACACAAGCGCTTA 58.080 40.909 24.55 4.66 0.00 3.09
570 1723 4.503910 TCAATACAGACACAAGCGCTTAT 58.496 39.130 24.55 9.39 0.00 1.73
571 1724 5.656480 TCAATACAGACACAAGCGCTTATA 58.344 37.500 24.55 7.14 0.00 0.98
572 1725 6.280643 TCAATACAGACACAAGCGCTTATAT 58.719 36.000 24.55 10.78 0.00 0.86
573 1726 7.430441 TCAATACAGACACAAGCGCTTATATA 58.570 34.615 24.55 8.88 0.00 0.86
574 1727 8.088365 TCAATACAGACACAAGCGCTTATATAT 58.912 33.333 24.55 10.71 0.00 0.86
575 1728 9.353999 CAATACAGACACAAGCGCTTATATATA 57.646 33.333 24.55 9.93 0.00 0.86
576 1729 8.912787 ATACAGACACAAGCGCTTATATATAC 57.087 34.615 24.55 10.53 0.00 1.47
577 1730 6.745116 ACAGACACAAGCGCTTATATATACA 58.255 36.000 24.55 0.00 0.00 2.29
578 1731 6.641314 ACAGACACAAGCGCTTATATATACAC 59.359 38.462 24.55 7.55 0.00 2.90
579 1732 5.856986 AGACACAAGCGCTTATATATACACG 59.143 40.000 24.55 8.82 0.00 4.49
580 1733 4.384846 ACACAAGCGCTTATATATACACGC 59.615 41.667 24.55 22.21 46.20 5.34
586 1739 5.948348 GCGCTTATATATACACGCATACAC 58.052 41.667 23.71 3.65 45.25 2.90
587 1740 5.742453 GCGCTTATATATACACGCATACACT 59.258 40.000 23.71 0.00 45.25 3.55
588 1741 6.252869 GCGCTTATATATACACGCATACACTT 59.747 38.462 23.71 0.00 45.25 3.16
589 1742 7.430211 GCGCTTATATATACACGCATACACTTA 59.570 37.037 23.71 0.00 45.25 2.24
590 1743 8.731326 CGCTTATATATACACGCATACACTTAC 58.269 37.037 0.00 0.00 0.00 2.34
591 1744 9.017669 GCTTATATATACACGCATACACTTACC 57.982 37.037 0.00 0.00 0.00 2.85
592 1745 9.512435 CTTATATATACACGCATACACTTACCC 57.488 37.037 0.00 0.00 0.00 3.69
593 1746 2.965572 TACACGCATACACTTACCCC 57.034 50.000 0.00 0.00 0.00 4.95
594 1747 1.272807 ACACGCATACACTTACCCCT 58.727 50.000 0.00 0.00 0.00 4.79
595 1748 2.459644 ACACGCATACACTTACCCCTA 58.540 47.619 0.00 0.00 0.00 3.53
596 1749 3.036091 ACACGCATACACTTACCCCTAT 58.964 45.455 0.00 0.00 0.00 2.57
597 1750 3.181469 ACACGCATACACTTACCCCTATG 60.181 47.826 0.00 0.00 0.00 2.23
598 1751 3.069016 CACGCATACACTTACCCCTATGA 59.931 47.826 0.00 0.00 0.00 2.15
599 1752 3.707611 ACGCATACACTTACCCCTATGAA 59.292 43.478 0.00 0.00 0.00 2.57
600 1753 4.056050 CGCATACACTTACCCCTATGAAC 58.944 47.826 0.00 0.00 0.00 3.18
601 1754 4.056050 GCATACACTTACCCCTATGAACG 58.944 47.826 0.00 0.00 0.00 3.95
602 1755 2.685850 ACACTTACCCCTATGAACGC 57.314 50.000 0.00 0.00 0.00 4.84
603 1756 1.903860 ACACTTACCCCTATGAACGCA 59.096 47.619 0.00 0.00 0.00 5.24
604 1757 2.277084 CACTTACCCCTATGAACGCAC 58.723 52.381 0.00 0.00 0.00 5.34
605 1758 1.903860 ACTTACCCCTATGAACGCACA 59.096 47.619 0.00 0.00 0.00 4.57
606 1759 2.277084 CTTACCCCTATGAACGCACAC 58.723 52.381 0.00 0.00 0.00 3.82
607 1760 1.268066 TACCCCTATGAACGCACACA 58.732 50.000 0.00 0.00 0.00 3.72
608 1761 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
609 1762 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
616 1769 2.279650 ACGCACACACGTACACCC 60.280 61.111 0.00 0.00 46.19 4.61
617 1770 2.028484 CGCACACACGTACACCCT 59.972 61.111 0.00 0.00 0.00 4.34
618 1771 1.286570 CGCACACACGTACACCCTA 59.713 57.895 0.00 0.00 0.00 3.53
619 1772 1.005294 CGCACACACGTACACCCTAC 61.005 60.000 0.00 0.00 0.00 3.18
620 1773 0.668401 GCACACACGTACACCCTACC 60.668 60.000 0.00 0.00 0.00 3.18
621 1774 0.037975 CACACACGTACACCCTACCC 60.038 60.000 0.00 0.00 0.00 3.69
622 1775 1.213537 CACACGTACACCCTACCCG 59.786 63.158 0.00 0.00 0.00 5.28
623 1776 1.228552 ACACGTACACCCTACCCGT 60.229 57.895 0.00 0.00 0.00 5.28
624 1777 0.037590 ACACGTACACCCTACCCGTA 59.962 55.000 0.00 0.00 0.00 4.02
625 1778 1.340991 ACACGTACACCCTACCCGTAT 60.341 52.381 0.00 0.00 0.00 3.06
626 1779 1.066002 CACGTACACCCTACCCGTATG 59.934 57.143 0.00 0.00 0.00 2.39
627 1780 1.064758 ACGTACACCCTACCCGTATGA 60.065 52.381 0.00 0.00 0.00 2.15
628 1781 1.605710 CGTACACCCTACCCGTATGAG 59.394 57.143 0.00 0.00 0.00 2.90
629 1782 1.339291 GTACACCCTACCCGTATGAGC 59.661 57.143 0.00 0.00 0.00 4.26
630 1783 0.324923 ACACCCTACCCGTATGAGCA 60.325 55.000 0.00 0.00 0.00 4.26
631 1784 0.104304 CACCCTACCCGTATGAGCAC 59.896 60.000 0.00 0.00 0.00 4.40
632 1785 1.047034 ACCCTACCCGTATGAGCACC 61.047 60.000 0.00 0.00 0.00 5.01
633 1786 0.759436 CCCTACCCGTATGAGCACCT 60.759 60.000 0.00 0.00 0.00 4.00
634 1787 1.120530 CCTACCCGTATGAGCACCTT 58.879 55.000 0.00 0.00 0.00 3.50
635 1788 1.068741 CCTACCCGTATGAGCACCTTC 59.931 57.143 0.00 0.00 0.00 3.46
636 1789 0.742505 TACCCGTATGAGCACCTTCG 59.257 55.000 0.00 0.00 0.00 3.79
637 1790 0.968901 ACCCGTATGAGCACCTTCGA 60.969 55.000 0.00 0.00 0.00 3.71
638 1791 0.174845 CCCGTATGAGCACCTTCGAA 59.825 55.000 0.00 0.00 0.00 3.71
639 1792 1.404986 CCCGTATGAGCACCTTCGAAA 60.405 52.381 0.00 0.00 0.00 3.46
640 1793 1.927174 CCGTATGAGCACCTTCGAAAG 59.073 52.381 0.00 0.00 0.00 2.62
641 1794 2.416836 CCGTATGAGCACCTTCGAAAGA 60.417 50.000 0.00 0.00 39.20 2.52
642 1795 2.599082 CGTATGAGCACCTTCGAAAGAC 59.401 50.000 0.00 0.00 41.84 3.01
643 1796 3.673594 CGTATGAGCACCTTCGAAAGACT 60.674 47.826 0.00 0.00 41.84 3.24
644 1797 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
645 1798 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
646 1799 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
647 1800 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
648 1801 1.433534 CACCTTCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 41.84 4.70
649 1802 0.038159 ACCTTCGAAAGACTGAGCCG 60.038 55.000 0.00 0.00 41.84 5.52
650 1803 0.737715 CCTTCGAAAGACTGAGCCGG 60.738 60.000 0.00 0.00 41.84 6.13
651 1804 1.355066 CTTCGAAAGACTGAGCCGGC 61.355 60.000 21.89 21.89 41.84 6.13
652 1805 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
653 1806 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
654 1807 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
655 1808 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
656 1809 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
657 1810 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
658 1811 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
659 1812 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
660 1813 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
661 1814 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
662 1815 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
663 1816 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
664 1817 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
665 1818 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
666 1819 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
667 1820 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
668 1821 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
669 1822 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
670 1823 5.412594 GCCGGCATATCATCTTGAGATTTAA 59.587 40.000 24.80 0.00 31.21 1.52
671 1824 6.072508 GCCGGCATATCATCTTGAGATTTAAA 60.073 38.462 24.80 0.00 31.21 1.52
672 1825 7.362401 GCCGGCATATCATCTTGAGATTTAAAT 60.362 37.037 24.80 0.00 31.21 1.40
673 1826 8.180267 CCGGCATATCATCTTGAGATTTAAATC 58.820 37.037 18.70 18.70 35.64 2.17
674 1827 8.180267 CGGCATATCATCTTGAGATTTAAATCC 58.820 37.037 21.86 14.69 36.04 3.01
675 1828 9.240734 GGCATATCATCTTGAGATTTAAATCCT 57.759 33.333 21.86 11.18 36.04 3.24
699 1852 7.857734 TGAAATAAATTCAGGAATAGTGCGA 57.142 32.000 0.00 0.00 43.08 5.10
700 1853 7.919690 TGAAATAAATTCAGGAATAGTGCGAG 58.080 34.615 0.00 0.00 43.08 5.03
701 1854 5.931441 ATAAATTCAGGAATAGTGCGAGC 57.069 39.130 0.00 0.00 0.00 5.03
702 1855 2.988010 ATTCAGGAATAGTGCGAGCA 57.012 45.000 0.00 0.00 0.00 4.26
703 1856 2.010145 TTCAGGAATAGTGCGAGCAC 57.990 50.000 19.45 19.45 46.50 4.40
712 1865 3.389741 GTGCGAGCACAAGGATTTG 57.610 52.632 21.73 0.00 45.53 2.32
713 1866 0.874390 GTGCGAGCACAAGGATTTGA 59.126 50.000 21.73 0.00 45.53 2.69
714 1867 1.266718 GTGCGAGCACAAGGATTTGAA 59.733 47.619 21.73 0.00 45.53 2.69
715 1868 1.266718 TGCGAGCACAAGGATTTGAAC 59.733 47.619 0.00 0.00 37.73 3.18
716 1869 1.401539 GCGAGCACAAGGATTTGAACC 60.402 52.381 0.00 0.00 37.73 3.62
717 1870 1.200020 CGAGCACAAGGATTTGAACCC 59.800 52.381 0.00 0.00 37.73 4.11
718 1871 2.519013 GAGCACAAGGATTTGAACCCT 58.481 47.619 0.00 0.00 37.73 4.34
719 1872 2.229784 GAGCACAAGGATTTGAACCCTG 59.770 50.000 0.00 0.00 37.73 4.45
720 1873 2.158475 AGCACAAGGATTTGAACCCTGA 60.158 45.455 0.00 0.00 37.73 3.86
721 1874 2.827921 GCACAAGGATTTGAACCCTGAT 59.172 45.455 0.00 0.00 37.73 2.90
722 1875 3.367703 GCACAAGGATTTGAACCCTGATG 60.368 47.826 0.00 0.00 37.73 3.07
723 1876 3.194116 CACAAGGATTTGAACCCTGATGG 59.806 47.826 0.00 0.00 37.73 3.51
724 1877 2.762327 CAAGGATTTGAACCCTGATGGG 59.238 50.000 0.00 0.00 46.93 4.00
736 1889 2.654863 CCTGATGGGTTGGAATACCAC 58.345 52.381 0.00 0.00 46.80 4.16
737 1890 2.242196 CCTGATGGGTTGGAATACCACT 59.758 50.000 0.00 0.00 46.80 4.00
738 1891 3.282021 CTGATGGGTTGGAATACCACTG 58.718 50.000 0.00 0.00 46.80 3.66
739 1892 2.647299 TGATGGGTTGGAATACCACTGT 59.353 45.455 0.00 0.00 46.80 3.55
740 1893 2.871096 TGGGTTGGAATACCACTGTC 57.129 50.000 0.00 0.00 46.80 3.51
741 1894 1.353022 TGGGTTGGAATACCACTGTCC 59.647 52.381 0.00 0.00 46.80 4.02
742 1895 1.353022 GGGTTGGAATACCACTGTCCA 59.647 52.381 0.00 0.00 46.80 4.02
743 1896 2.433436 GGTTGGAATACCACTGTCCAC 58.567 52.381 0.00 0.00 46.80 4.02
744 1897 2.433436 GTTGGAATACCACTGTCCACC 58.567 52.381 0.00 0.00 46.80 4.61
745 1898 2.038863 TGGAATACCACTGTCCACCT 57.961 50.000 0.00 0.00 41.77 4.00
746 1899 3.193395 TGGAATACCACTGTCCACCTA 57.807 47.619 0.00 0.00 41.77 3.08
747 1900 3.522759 TGGAATACCACTGTCCACCTAA 58.477 45.455 0.00 0.00 41.77 2.69
748 1901 3.262405 TGGAATACCACTGTCCACCTAAC 59.738 47.826 0.00 0.00 41.77 2.34
749 1902 3.370209 GGAATACCACTGTCCACCTAACC 60.370 52.174 0.00 0.00 35.97 2.85
750 1903 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
751 1904 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
752 1905 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
753 1906 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
754 1907 2.305927 CCACTGTCCACCTAACCATCTT 59.694 50.000 0.00 0.00 0.00 2.40
755 1908 3.517901 CCACTGTCCACCTAACCATCTTA 59.482 47.826 0.00 0.00 0.00 2.10
756 1909 4.019681 CCACTGTCCACCTAACCATCTTAA 60.020 45.833 0.00 0.00 0.00 1.85
757 1910 4.935808 CACTGTCCACCTAACCATCTTAAC 59.064 45.833 0.00 0.00 0.00 2.01
758 1911 4.019591 ACTGTCCACCTAACCATCTTAACC 60.020 45.833 0.00 0.00 0.00 2.85
759 1912 3.911260 TGTCCACCTAACCATCTTAACCA 59.089 43.478 0.00 0.00 0.00 3.67
760 1913 4.259356 GTCCACCTAACCATCTTAACCAC 58.741 47.826 0.00 0.00 0.00 4.16
761 1914 3.911260 TCCACCTAACCATCTTAACCACA 59.089 43.478 0.00 0.00 0.00 4.17
762 1915 4.538490 TCCACCTAACCATCTTAACCACAT 59.462 41.667 0.00 0.00 0.00 3.21
763 1916 4.640201 CCACCTAACCATCTTAACCACATG 59.360 45.833 0.00 0.00 0.00 3.21
764 1917 5.253330 CACCTAACCATCTTAACCACATGT 58.747 41.667 0.00 0.00 0.00 3.21
765 1918 5.710099 CACCTAACCATCTTAACCACATGTT 59.290 40.000 0.00 0.00 41.11 2.71
766 1919 5.710099 ACCTAACCATCTTAACCACATGTTG 59.290 40.000 0.00 0.00 37.83 3.33
767 1920 5.943416 CCTAACCATCTTAACCACATGTTGA 59.057 40.000 3.55 0.00 37.83 3.18
768 1921 6.603201 CCTAACCATCTTAACCACATGTTGAT 59.397 38.462 3.55 0.00 37.83 2.57
769 1922 6.916360 AACCATCTTAACCACATGTTGATT 57.084 33.333 3.55 0.00 37.83 2.57
770 1923 6.515272 ACCATCTTAACCACATGTTGATTC 57.485 37.500 3.55 0.00 37.83 2.52
771 1924 5.123820 ACCATCTTAACCACATGTTGATTCG 59.876 40.000 3.55 0.00 37.83 3.34
772 1925 4.678509 TCTTAACCACATGTTGATTCGC 57.321 40.909 3.55 0.00 37.83 4.70
847 2000 2.359531 CTCTAGGCTTCTCCTTGTACCG 59.640 54.545 0.00 0.00 44.75 4.02
1311 2479 4.988716 ACCTGCGACTCCCACGGA 62.989 66.667 0.00 0.00 0.00 4.69
1378 2546 4.116328 CGCTCTTCGTGCTCCGGA 62.116 66.667 2.93 2.93 37.11 5.14
1556 2724 4.808558 TGATTGATGCACTTTTAGCCAAC 58.191 39.130 0.00 0.00 0.00 3.77
1718 2900 5.221244 GGATTGGGTGGAAAGCAATACATAC 60.221 44.000 0.00 0.00 0.00 2.39
1721 2903 4.134563 GGGTGGAAAGCAATACATACGAT 58.865 43.478 0.00 0.00 0.00 3.73
1802 2984 7.480810 GTTGAAACCATAGGGATTATTCACAC 58.519 38.462 0.00 3.87 38.05 3.82
2022 3204 7.671819 TGAACCATAGGACAATTACATTTTGGA 59.328 33.333 0.00 0.00 0.00 3.53
2416 3609 3.402110 TGAGTATGATAATGCAAGGGCG 58.598 45.455 0.00 0.00 45.35 6.13
2787 3983 2.093310 CAGCTCAGATACAAACGCACAG 59.907 50.000 0.00 0.00 0.00 3.66
2797 3993 2.278182 AAACGCACAGCACCACAACC 62.278 55.000 0.00 0.00 0.00 3.77
3318 4514 0.899720 ATACGAGCGGAAAGGAACCA 59.100 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.034186 TCAATCCCTGCACCCACATC 60.034 55.000 0.00 0.00 0.00 3.06
170 171 3.615056 CACACGACTGTTTACAACACTCA 59.385 43.478 0.00 0.00 36.25 3.41
281 284 3.502979 GCACATCCAACTACCCGTAAAAA 59.497 43.478 0.00 0.00 0.00 1.94
282 285 3.075884 GCACATCCAACTACCCGTAAAA 58.924 45.455 0.00 0.00 0.00 1.52
283 286 2.303600 AGCACATCCAACTACCCGTAAA 59.696 45.455 0.00 0.00 0.00 2.01
284 287 1.903860 AGCACATCCAACTACCCGTAA 59.096 47.619 0.00 0.00 0.00 3.18
285 288 1.563924 AGCACATCCAACTACCCGTA 58.436 50.000 0.00 0.00 0.00 4.02
286 289 0.690762 AAGCACATCCAACTACCCGT 59.309 50.000 0.00 0.00 0.00 5.28
287 290 1.737793 GAAAGCACATCCAACTACCCG 59.262 52.381 0.00 0.00 0.00 5.28
288 291 1.737793 CGAAAGCACATCCAACTACCC 59.262 52.381 0.00 0.00 0.00 3.69
289 292 2.159627 CACGAAAGCACATCCAACTACC 59.840 50.000 0.00 0.00 0.00 3.18
290 293 2.806244 ACACGAAAGCACATCCAACTAC 59.194 45.455 0.00 0.00 0.00 2.73
291 294 3.120321 ACACGAAAGCACATCCAACTA 57.880 42.857 0.00 0.00 0.00 2.24
292 295 1.967319 ACACGAAAGCACATCCAACT 58.033 45.000 0.00 0.00 0.00 3.16
293 296 2.774439 AACACGAAAGCACATCCAAC 57.226 45.000 0.00 0.00 0.00 3.77
294 297 3.791973 AAAACACGAAAGCACATCCAA 57.208 38.095 0.00 0.00 0.00 3.53
295 298 3.791973 AAAAACACGAAAGCACATCCA 57.208 38.095 0.00 0.00 0.00 3.41
296 299 4.602995 TGTAAAAACACGAAAGCACATCC 58.397 39.130 0.00 0.00 0.00 3.51
297 300 4.675114 CCTGTAAAAACACGAAAGCACATC 59.325 41.667 0.00 0.00 0.00 3.06
298 301 4.097286 ACCTGTAAAAACACGAAAGCACAT 59.903 37.500 0.00 0.00 0.00 3.21
299 302 3.440872 ACCTGTAAAAACACGAAAGCACA 59.559 39.130 0.00 0.00 0.00 4.57
300 303 3.789224 CACCTGTAAAAACACGAAAGCAC 59.211 43.478 0.00 0.00 0.00 4.40
301 304 3.440872 ACACCTGTAAAAACACGAAAGCA 59.559 39.130 0.00 0.00 0.00 3.91
302 305 4.023739 ACACCTGTAAAAACACGAAAGC 57.976 40.909 0.00 0.00 0.00 3.51
303 306 6.778108 ACTTACACCTGTAAAAACACGAAAG 58.222 36.000 0.00 0.00 39.70 2.62
304 307 6.740411 ACTTACACCTGTAAAAACACGAAA 57.260 33.333 0.00 0.00 39.70 3.46
305 308 6.740411 AACTTACACCTGTAAAAACACGAA 57.260 33.333 0.00 0.00 39.70 3.85
306 309 6.740411 AAACTTACACCTGTAAAAACACGA 57.260 33.333 0.00 0.00 39.70 4.35
307 310 7.245604 AGAAAACTTACACCTGTAAAAACACG 58.754 34.615 0.00 0.00 39.70 4.49
308 311 7.699391 GGAGAAAACTTACACCTGTAAAAACAC 59.301 37.037 0.00 0.00 39.70 3.32
309 312 7.393796 TGGAGAAAACTTACACCTGTAAAAACA 59.606 33.333 0.00 0.00 39.70 2.83
310 313 7.764331 TGGAGAAAACTTACACCTGTAAAAAC 58.236 34.615 0.00 0.00 39.70 2.43
311 314 7.941431 TGGAGAAAACTTACACCTGTAAAAA 57.059 32.000 0.00 0.00 39.70 1.94
312 315 7.469456 GCATGGAGAAAACTTACACCTGTAAAA 60.469 37.037 0.00 0.00 39.70 1.52
313 316 6.016610 GCATGGAGAAAACTTACACCTGTAAA 60.017 38.462 0.00 0.00 39.70 2.01
314 317 5.472137 GCATGGAGAAAACTTACACCTGTAA 59.528 40.000 0.00 0.00 38.10 2.41
315 318 5.001232 GCATGGAGAAAACTTACACCTGTA 58.999 41.667 0.00 0.00 0.00 2.74
316 319 3.821033 GCATGGAGAAAACTTACACCTGT 59.179 43.478 0.00 0.00 0.00 4.00
317 320 3.120199 CGCATGGAGAAAACTTACACCTG 60.120 47.826 0.00 0.00 0.00 4.00
318 321 3.074412 CGCATGGAGAAAACTTACACCT 58.926 45.455 0.00 0.00 0.00 4.00
319 322 2.161609 CCGCATGGAGAAAACTTACACC 59.838 50.000 0.00 0.00 37.49 4.16
320 323 3.071479 TCCGCATGGAGAAAACTTACAC 58.929 45.455 0.00 0.00 40.17 2.90
321 324 3.410631 TCCGCATGGAGAAAACTTACA 57.589 42.857 0.00 0.00 40.17 2.41
332 335 3.074412 GTCTCTTTTTCTTCCGCATGGA 58.926 45.455 0.00 0.00 44.61 3.41
333 336 2.162408 GGTCTCTTTTTCTTCCGCATGG 59.838 50.000 0.00 0.00 0.00 3.66
334 337 3.077359 AGGTCTCTTTTTCTTCCGCATG 58.923 45.455 0.00 0.00 0.00 4.06
335 338 3.077359 CAGGTCTCTTTTTCTTCCGCAT 58.923 45.455 0.00 0.00 0.00 4.73
336 339 2.494059 CAGGTCTCTTTTTCTTCCGCA 58.506 47.619 0.00 0.00 0.00 5.69
337 340 1.197949 GCAGGTCTCTTTTTCTTCCGC 59.802 52.381 0.00 0.00 0.00 5.54
338 341 1.807142 GGCAGGTCTCTTTTTCTTCCG 59.193 52.381 0.00 0.00 0.00 4.30
339 342 1.807142 CGGCAGGTCTCTTTTTCTTCC 59.193 52.381 0.00 0.00 0.00 3.46
340 343 2.767505 TCGGCAGGTCTCTTTTTCTTC 58.232 47.619 0.00 0.00 0.00 2.87
341 344 2.930826 TCGGCAGGTCTCTTTTTCTT 57.069 45.000 0.00 0.00 0.00 2.52
342 345 2.930826 TTCGGCAGGTCTCTTTTTCT 57.069 45.000 0.00 0.00 0.00 2.52
343 346 3.982576 TTTTCGGCAGGTCTCTTTTTC 57.017 42.857 0.00 0.00 0.00 2.29
344 347 3.005791 CCATTTTCGGCAGGTCTCTTTTT 59.994 43.478 0.00 0.00 0.00 1.94
345 348 2.558359 CCATTTTCGGCAGGTCTCTTTT 59.442 45.455 0.00 0.00 0.00 2.27
346 349 2.162681 CCATTTTCGGCAGGTCTCTTT 58.837 47.619 0.00 0.00 0.00 2.52
347 350 1.826385 CCATTTTCGGCAGGTCTCTT 58.174 50.000 0.00 0.00 0.00 2.85
348 351 3.558674 CCATTTTCGGCAGGTCTCT 57.441 52.632 0.00 0.00 0.00 3.10
357 360 2.524569 AAACAAGGTGCCATTTTCGG 57.475 45.000 0.00 0.00 0.00 4.30
358 361 5.975410 TTTAAAACAAGGTGCCATTTTCG 57.025 34.783 0.00 0.00 0.00 3.46
366 369 9.820229 GCCTTATTTTTATTTAAAACAAGGTGC 57.180 29.630 21.93 13.25 42.53 5.01
378 381 9.448438 GGGTTTTCTCATGCCTTATTTTTATTT 57.552 29.630 0.00 0.00 0.00 1.40
379 382 8.046708 GGGGTTTTCTCATGCCTTATTTTTATT 58.953 33.333 0.00 0.00 0.00 1.40
380 383 7.402941 AGGGGTTTTCTCATGCCTTATTTTTAT 59.597 33.333 0.00 0.00 0.00 1.40
381 384 6.728632 AGGGGTTTTCTCATGCCTTATTTTTA 59.271 34.615 0.00 0.00 0.00 1.52
382 385 5.547666 AGGGGTTTTCTCATGCCTTATTTTT 59.452 36.000 0.00 0.00 0.00 1.94
383 386 5.093677 AGGGGTTTTCTCATGCCTTATTTT 58.906 37.500 0.00 0.00 0.00 1.82
384 387 4.687976 AGGGGTTTTCTCATGCCTTATTT 58.312 39.130 0.00 0.00 0.00 1.40
385 388 4.337264 AGGGGTTTTCTCATGCCTTATT 57.663 40.909 0.00 0.00 0.00 1.40
386 389 4.337264 AAGGGGTTTTCTCATGCCTTAT 57.663 40.909 0.00 0.00 0.00 1.73
387 390 3.825908 AAGGGGTTTTCTCATGCCTTA 57.174 42.857 0.00 0.00 0.00 2.69
388 391 2.702270 AAGGGGTTTTCTCATGCCTT 57.298 45.000 0.00 0.00 0.00 4.35
389 392 2.529632 GAAAGGGGTTTTCTCATGCCT 58.470 47.619 0.00 0.00 41.61 4.75
418 421 8.893727 GCACATCCAACTAAGTATTGTCTAATT 58.106 33.333 0.00 0.00 0.00 1.40
419 422 8.267894 AGCACATCCAACTAAGTATTGTCTAAT 58.732 33.333 0.00 0.00 0.00 1.73
420 423 7.620880 AGCACATCCAACTAAGTATTGTCTAA 58.379 34.615 0.00 0.00 0.00 2.10
421 424 7.182817 AGCACATCCAACTAAGTATTGTCTA 57.817 36.000 0.00 0.00 0.00 2.59
422 425 6.054860 AGCACATCCAACTAAGTATTGTCT 57.945 37.500 0.00 0.00 0.00 3.41
423 426 6.743575 AAGCACATCCAACTAAGTATTGTC 57.256 37.500 0.00 0.00 0.00 3.18
424 427 7.524717 AAAAGCACATCCAACTAAGTATTGT 57.475 32.000 0.00 0.00 0.00 2.71
539 1692 7.083858 GCTTGTGTCTGTATTGATGCTAAAAA 58.916 34.615 0.00 0.00 0.00 1.94
540 1693 6.611381 GCTTGTGTCTGTATTGATGCTAAAA 58.389 36.000 0.00 0.00 0.00 1.52
541 1694 5.163864 CGCTTGTGTCTGTATTGATGCTAAA 60.164 40.000 0.00 0.00 0.00 1.85
542 1695 4.329801 CGCTTGTGTCTGTATTGATGCTAA 59.670 41.667 0.00 0.00 0.00 3.09
543 1696 3.865164 CGCTTGTGTCTGTATTGATGCTA 59.135 43.478 0.00 0.00 0.00 3.49
544 1697 2.674852 CGCTTGTGTCTGTATTGATGCT 59.325 45.455 0.00 0.00 0.00 3.79
545 1698 2.789092 GCGCTTGTGTCTGTATTGATGC 60.789 50.000 0.00 0.00 0.00 3.91
546 1699 2.674852 AGCGCTTGTGTCTGTATTGATG 59.325 45.455 2.64 0.00 0.00 3.07
547 1700 2.977914 AGCGCTTGTGTCTGTATTGAT 58.022 42.857 2.64 0.00 0.00 2.57
548 1701 2.455674 AGCGCTTGTGTCTGTATTGA 57.544 45.000 2.64 0.00 0.00 2.57
549 1702 4.864916 ATAAGCGCTTGTGTCTGTATTG 57.135 40.909 32.23 0.00 0.00 1.90
550 1703 9.355215 GTATATATAAGCGCTTGTGTCTGTATT 57.645 33.333 32.23 3.76 0.00 1.89
551 1704 8.520351 TGTATATATAAGCGCTTGTGTCTGTAT 58.480 33.333 32.23 16.95 0.00 2.29
552 1705 7.806487 GTGTATATATAAGCGCTTGTGTCTGTA 59.194 37.037 32.23 10.34 0.00 2.74
553 1706 6.641314 GTGTATATATAAGCGCTTGTGTCTGT 59.359 38.462 32.23 15.17 0.00 3.41
554 1707 6.183359 CGTGTATATATAAGCGCTTGTGTCTG 60.183 42.308 32.23 8.50 0.00 3.51
555 1708 5.856986 CGTGTATATATAAGCGCTTGTGTCT 59.143 40.000 32.23 18.34 0.00 3.41
556 1709 5.442909 GCGTGTATATATAAGCGCTTGTGTC 60.443 44.000 32.23 12.66 41.37 3.67
557 1710 4.384846 GCGTGTATATATAAGCGCTTGTGT 59.615 41.667 32.23 25.25 41.37 3.72
558 1711 4.384547 TGCGTGTATATATAAGCGCTTGTG 59.615 41.667 32.23 12.09 44.34 3.33
559 1712 4.552355 TGCGTGTATATATAAGCGCTTGT 58.448 39.130 32.23 27.59 44.34 3.16
560 1713 5.702622 ATGCGTGTATATATAAGCGCTTG 57.297 39.130 32.23 12.39 44.34 4.01
561 1714 6.252869 GTGTATGCGTGTATATATAAGCGCTT 59.747 38.462 27.97 27.97 44.34 4.68
562 1715 5.742453 GTGTATGCGTGTATATATAAGCGCT 59.258 40.000 27.38 2.64 44.34 5.92
563 1716 5.742453 AGTGTATGCGTGTATATATAAGCGC 59.258 40.000 23.85 23.85 44.29 5.92
564 1717 7.736031 AAGTGTATGCGTGTATATATAAGCG 57.264 36.000 11.54 10.91 0.00 4.68
565 1718 9.017669 GGTAAGTGTATGCGTGTATATATAAGC 57.982 37.037 9.84 9.84 0.00 3.09
566 1719 9.512435 GGGTAAGTGTATGCGTGTATATATAAG 57.488 37.037 0.00 0.00 0.00 1.73
567 1720 8.469200 GGGGTAAGTGTATGCGTGTATATATAA 58.531 37.037 0.00 0.00 0.00 0.98
568 1721 7.835682 AGGGGTAAGTGTATGCGTGTATATATA 59.164 37.037 0.00 0.00 0.00 0.86
569 1722 6.666546 AGGGGTAAGTGTATGCGTGTATATAT 59.333 38.462 0.00 0.00 0.00 0.86
570 1723 6.012113 AGGGGTAAGTGTATGCGTGTATATA 58.988 40.000 0.00 0.00 0.00 0.86
571 1724 4.836736 AGGGGTAAGTGTATGCGTGTATAT 59.163 41.667 0.00 0.00 0.00 0.86
572 1725 4.217510 AGGGGTAAGTGTATGCGTGTATA 58.782 43.478 0.00 0.00 0.00 1.47
573 1726 3.036091 AGGGGTAAGTGTATGCGTGTAT 58.964 45.455 0.00 0.00 0.00 2.29
574 1727 2.459644 AGGGGTAAGTGTATGCGTGTA 58.540 47.619 0.00 0.00 0.00 2.90
575 1728 1.272807 AGGGGTAAGTGTATGCGTGT 58.727 50.000 0.00 0.00 0.00 4.49
576 1729 3.069016 TCATAGGGGTAAGTGTATGCGTG 59.931 47.826 0.00 0.00 0.00 5.34
577 1730 3.302161 TCATAGGGGTAAGTGTATGCGT 58.698 45.455 0.00 0.00 0.00 5.24
578 1731 4.056050 GTTCATAGGGGTAAGTGTATGCG 58.944 47.826 0.00 0.00 0.00 4.73
579 1732 4.056050 CGTTCATAGGGGTAAGTGTATGC 58.944 47.826 0.00 0.00 0.00 3.14
580 1733 4.056050 GCGTTCATAGGGGTAAGTGTATG 58.944 47.826 0.00 0.00 0.00 2.39
581 1734 3.707611 TGCGTTCATAGGGGTAAGTGTAT 59.292 43.478 0.00 0.00 0.00 2.29
582 1735 3.098377 TGCGTTCATAGGGGTAAGTGTA 58.902 45.455 0.00 0.00 0.00 2.90
583 1736 1.903860 TGCGTTCATAGGGGTAAGTGT 59.096 47.619 0.00 0.00 0.00 3.55
584 1737 2.277084 GTGCGTTCATAGGGGTAAGTG 58.723 52.381 0.00 0.00 0.00 3.16
585 1738 1.903860 TGTGCGTTCATAGGGGTAAGT 59.096 47.619 0.00 0.00 0.00 2.24
586 1739 2.277084 GTGTGCGTTCATAGGGGTAAG 58.723 52.381 0.00 0.00 0.00 2.34
587 1740 1.624312 TGTGTGCGTTCATAGGGGTAA 59.376 47.619 0.00 0.00 0.00 2.85
588 1741 1.066716 GTGTGTGCGTTCATAGGGGTA 60.067 52.381 0.00 0.00 0.00 3.69
589 1742 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
590 1743 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
591 1744 0.669318 ACGTGTGTGCGTTCATAGGG 60.669 55.000 0.00 0.00 43.04 3.53
592 1745 1.652124 GTACGTGTGTGCGTTCATAGG 59.348 52.381 0.00 0.00 43.04 2.57
593 1746 2.090041 GTGTACGTGTGTGCGTTCATAG 59.910 50.000 0.00 0.00 43.04 2.23
594 1747 2.052891 GTGTACGTGTGTGCGTTCATA 58.947 47.619 0.00 0.00 43.04 2.15
595 1748 0.856641 GTGTACGTGTGTGCGTTCAT 59.143 50.000 0.00 0.00 43.04 2.57
596 1749 1.146957 GGTGTACGTGTGTGCGTTCA 61.147 55.000 0.00 0.00 43.04 3.18
597 1750 1.561250 GGTGTACGTGTGTGCGTTC 59.439 57.895 0.00 0.00 43.04 3.95
598 1751 1.884004 GGGTGTACGTGTGTGCGTT 60.884 57.895 0.00 0.00 43.04 4.84
600 1753 1.005294 GTAGGGTGTACGTGTGTGCG 61.005 60.000 0.00 0.00 32.77 5.34
601 1754 0.668401 GGTAGGGTGTACGTGTGTGC 60.668 60.000 0.00 0.00 0.00 4.57
602 1755 0.037975 GGGTAGGGTGTACGTGTGTG 60.038 60.000 0.00 0.00 0.00 3.82
603 1756 1.526575 CGGGTAGGGTGTACGTGTGT 61.527 60.000 0.00 0.00 0.00 3.72
604 1757 1.213537 CGGGTAGGGTGTACGTGTG 59.786 63.158 0.00 0.00 0.00 3.82
605 1758 0.037590 TACGGGTAGGGTGTACGTGT 59.962 55.000 0.00 0.00 38.34 4.49
606 1759 1.066002 CATACGGGTAGGGTGTACGTG 59.934 57.143 0.00 0.00 38.34 4.49
607 1760 1.064758 TCATACGGGTAGGGTGTACGT 60.065 52.381 0.00 0.00 41.10 3.57
608 1761 1.605710 CTCATACGGGTAGGGTGTACG 59.394 57.143 0.00 0.00 0.00 3.67
609 1762 1.339291 GCTCATACGGGTAGGGTGTAC 59.661 57.143 0.00 0.00 0.00 2.90
610 1763 1.063792 TGCTCATACGGGTAGGGTGTA 60.064 52.381 0.00 0.00 0.00 2.90
611 1764 0.324923 TGCTCATACGGGTAGGGTGT 60.325 55.000 0.00 0.00 0.00 4.16
612 1765 0.104304 GTGCTCATACGGGTAGGGTG 59.896 60.000 0.00 0.00 0.00 4.61
613 1766 1.047034 GGTGCTCATACGGGTAGGGT 61.047 60.000 0.00 0.00 0.00 4.34
614 1767 0.759436 AGGTGCTCATACGGGTAGGG 60.759 60.000 0.00 0.00 0.00 3.53
615 1768 1.068741 GAAGGTGCTCATACGGGTAGG 59.931 57.143 0.00 0.00 0.00 3.18
616 1769 1.269102 CGAAGGTGCTCATACGGGTAG 60.269 57.143 0.00 0.00 0.00 3.18
617 1770 0.742505 CGAAGGTGCTCATACGGGTA 59.257 55.000 0.00 0.00 0.00 3.69
618 1771 0.968901 TCGAAGGTGCTCATACGGGT 60.969 55.000 0.00 0.00 0.00 5.28
619 1772 0.174845 TTCGAAGGTGCTCATACGGG 59.825 55.000 0.00 0.00 0.00 5.28
620 1773 1.927174 CTTTCGAAGGTGCTCATACGG 59.073 52.381 0.00 0.00 0.00 4.02
621 1774 2.599082 GTCTTTCGAAGGTGCTCATACG 59.401 50.000 7.20 0.00 0.00 3.06
622 1775 3.614616 CAGTCTTTCGAAGGTGCTCATAC 59.385 47.826 7.20 0.00 0.00 2.39
623 1776 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
624 1777 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
625 1778 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
626 1779 2.333014 CTCAGTCTTTCGAAGGTGCTC 58.667 52.381 7.20 0.00 0.00 4.26
627 1780 1.606737 GCTCAGTCTTTCGAAGGTGCT 60.607 52.381 7.20 4.49 0.00 4.40
628 1781 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
629 1782 1.433534 GGCTCAGTCTTTCGAAGGTG 58.566 55.000 7.20 0.00 0.00 4.00
630 1783 0.038159 CGGCTCAGTCTTTCGAAGGT 60.038 55.000 7.20 0.00 0.00 3.50
631 1784 0.737715 CCGGCTCAGTCTTTCGAAGG 60.738 60.000 0.00 0.00 0.00 3.46
632 1785 1.355066 GCCGGCTCAGTCTTTCGAAG 61.355 60.000 22.15 0.00 0.00 3.79
633 1786 1.374252 GCCGGCTCAGTCTTTCGAA 60.374 57.895 22.15 0.00 0.00 3.71
634 1787 1.888436 ATGCCGGCTCAGTCTTTCGA 61.888 55.000 29.70 1.81 0.00 3.71
635 1788 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
636 1789 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
637 1790 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
638 1791 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
639 1792 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
640 1793 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
641 1794 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
642 1795 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
643 1796 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
644 1797 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
645 1798 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
646 1799 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
647 1800 7.439157 TTTAAATCTCAAGATGATATGCCGG 57.561 36.000 0.00 0.00 34.49 6.13
648 1801 8.180267 GGATTTAAATCTCAAGATGATATGCCG 58.820 37.037 23.85 0.00 35.73 5.69
649 1802 9.240734 AGGATTTAAATCTCAAGATGATATGCC 57.759 33.333 23.85 5.88 35.73 4.40
675 1828 7.467267 GCTCGCACTATTCCTGAATTTATTTCA 60.467 37.037 0.00 0.00 42.09 2.69
676 1829 6.853362 GCTCGCACTATTCCTGAATTTATTTC 59.147 38.462 0.00 0.00 34.72 2.17
677 1830 6.318648 TGCTCGCACTATTCCTGAATTTATTT 59.681 34.615 0.00 0.00 32.50 1.40
678 1831 5.822519 TGCTCGCACTATTCCTGAATTTATT 59.177 36.000 0.00 0.00 32.50 1.40
679 1832 5.237344 GTGCTCGCACTATTCCTGAATTTAT 59.763 40.000 14.38 0.00 43.12 1.40
680 1833 4.570772 GTGCTCGCACTATTCCTGAATTTA 59.429 41.667 14.38 0.00 43.12 1.40
681 1834 3.375299 GTGCTCGCACTATTCCTGAATTT 59.625 43.478 14.38 0.00 43.12 1.82
682 1835 2.939103 GTGCTCGCACTATTCCTGAATT 59.061 45.455 14.38 0.00 43.12 2.17
683 1836 2.093500 TGTGCTCGCACTATTCCTGAAT 60.093 45.455 21.14 0.00 46.30 2.57
684 1837 1.275010 TGTGCTCGCACTATTCCTGAA 59.725 47.619 21.14 0.00 46.30 3.02
685 1838 0.894835 TGTGCTCGCACTATTCCTGA 59.105 50.000 21.14 0.00 46.30 3.86
686 1839 1.662629 CTTGTGCTCGCACTATTCCTG 59.337 52.381 21.14 0.33 46.30 3.86
687 1840 1.406069 CCTTGTGCTCGCACTATTCCT 60.406 52.381 21.14 0.00 46.30 3.36
688 1841 1.009829 CCTTGTGCTCGCACTATTCC 58.990 55.000 21.14 0.00 46.30 3.01
689 1842 2.010145 TCCTTGTGCTCGCACTATTC 57.990 50.000 21.14 0.00 46.30 1.75
690 1843 2.698855 ATCCTTGTGCTCGCACTATT 57.301 45.000 21.14 1.76 46.30 1.73
691 1844 2.679837 CAAATCCTTGTGCTCGCACTAT 59.320 45.455 21.14 8.30 46.30 2.12
692 1845 2.076100 CAAATCCTTGTGCTCGCACTA 58.924 47.619 21.14 13.74 46.30 2.74
693 1846 0.877071 CAAATCCTTGTGCTCGCACT 59.123 50.000 21.14 0.00 46.30 4.40
694 1847 0.874390 TCAAATCCTTGTGCTCGCAC 59.126 50.000 14.75 14.75 46.33 5.34
695 1848 1.266718 GTTCAAATCCTTGTGCTCGCA 59.733 47.619 0.00 0.00 33.94 5.10
696 1849 1.401539 GGTTCAAATCCTTGTGCTCGC 60.402 52.381 0.00 0.00 33.94 5.03
697 1850 1.200020 GGGTTCAAATCCTTGTGCTCG 59.800 52.381 0.00 0.00 33.94 5.03
698 1851 2.229784 CAGGGTTCAAATCCTTGTGCTC 59.770 50.000 0.00 0.00 37.45 4.26
699 1852 2.158475 TCAGGGTTCAAATCCTTGTGCT 60.158 45.455 0.00 0.00 37.45 4.40
700 1853 2.238521 TCAGGGTTCAAATCCTTGTGC 58.761 47.619 0.00 0.00 37.45 4.57
701 1854 3.194116 CCATCAGGGTTCAAATCCTTGTG 59.806 47.826 0.00 0.00 37.45 3.33
702 1855 3.434309 CCATCAGGGTTCAAATCCTTGT 58.566 45.455 0.00 0.00 37.45 3.16
716 1869 2.242196 AGTGGTATTCCAACCCATCAGG 59.758 50.000 0.00 0.00 46.15 3.86
717 1870 3.282021 CAGTGGTATTCCAACCCATCAG 58.718 50.000 0.00 0.00 46.15 2.90
718 1871 2.647299 ACAGTGGTATTCCAACCCATCA 59.353 45.455 0.00 0.00 46.15 3.07
719 1872 3.279434 GACAGTGGTATTCCAACCCATC 58.721 50.000 0.00 0.00 46.15 3.51
720 1873 2.025321 GGACAGTGGTATTCCAACCCAT 60.025 50.000 0.00 0.00 46.15 4.00
721 1874 1.353022 GGACAGTGGTATTCCAACCCA 59.647 52.381 0.00 0.00 46.15 4.51
722 1875 1.353022 TGGACAGTGGTATTCCAACCC 59.647 52.381 0.00 0.00 46.15 4.11
723 1876 2.433436 GTGGACAGTGGTATTCCAACC 58.567 52.381 1.95 0.00 46.15 3.77
724 1877 2.039879 AGGTGGACAGTGGTATTCCAAC 59.960 50.000 7.33 7.33 46.08 3.77
725 1878 2.344592 AGGTGGACAGTGGTATTCCAA 58.655 47.619 1.95 0.00 46.15 3.53
726 1879 2.038863 AGGTGGACAGTGGTATTCCA 57.961 50.000 0.00 0.00 42.05 3.53
727 1880 3.370209 GGTTAGGTGGACAGTGGTATTCC 60.370 52.174 0.00 0.00 0.00 3.01
728 1881 3.262405 TGGTTAGGTGGACAGTGGTATTC 59.738 47.826 0.00 0.00 0.00 1.75
729 1882 3.253220 TGGTTAGGTGGACAGTGGTATT 58.747 45.455 0.00 0.00 0.00 1.89
730 1883 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
731 1884 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
732 1885 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
733 1886 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
734 1887 3.703001 AAGATGGTTAGGTGGACAGTG 57.297 47.619 0.00 0.00 0.00 3.66
735 1888 4.019591 GGTTAAGATGGTTAGGTGGACAGT 60.020 45.833 0.00 0.00 0.00 3.55
736 1889 4.019681 TGGTTAAGATGGTTAGGTGGACAG 60.020 45.833 0.00 0.00 0.00 3.51
737 1890 3.911260 TGGTTAAGATGGTTAGGTGGACA 59.089 43.478 0.00 0.00 0.00 4.02
738 1891 4.259356 GTGGTTAAGATGGTTAGGTGGAC 58.741 47.826 0.00 0.00 0.00 4.02
739 1892 3.911260 TGTGGTTAAGATGGTTAGGTGGA 59.089 43.478 0.00 0.00 0.00 4.02
740 1893 4.295141 TGTGGTTAAGATGGTTAGGTGG 57.705 45.455 0.00 0.00 0.00 4.61
741 1894 5.253330 ACATGTGGTTAAGATGGTTAGGTG 58.747 41.667 0.00 0.00 33.81 4.00
742 1895 5.514500 ACATGTGGTTAAGATGGTTAGGT 57.486 39.130 0.00 0.00 33.81 3.08
743 1896 5.943416 TCAACATGTGGTTAAGATGGTTAGG 59.057 40.000 0.00 0.00 37.72 2.69
744 1897 7.630242 ATCAACATGTGGTTAAGATGGTTAG 57.370 36.000 0.00 0.00 37.72 2.34
745 1898 7.148323 CGAATCAACATGTGGTTAAGATGGTTA 60.148 37.037 0.00 0.00 37.72 2.85
746 1899 6.349280 CGAATCAACATGTGGTTAAGATGGTT 60.349 38.462 0.00 0.00 37.72 3.67
747 1900 5.123820 CGAATCAACATGTGGTTAAGATGGT 59.876 40.000 0.00 0.00 37.72 3.55
748 1901 5.572211 CGAATCAACATGTGGTTAAGATGG 58.428 41.667 0.00 0.00 37.72 3.51
749 1902 5.030295 GCGAATCAACATGTGGTTAAGATG 58.970 41.667 0.00 0.00 37.72 2.90
750 1903 4.201812 CGCGAATCAACATGTGGTTAAGAT 60.202 41.667 0.00 0.00 37.72 2.40
751 1904 3.124466 CGCGAATCAACATGTGGTTAAGA 59.876 43.478 0.00 0.00 37.72 2.10
752 1905 3.416277 CGCGAATCAACATGTGGTTAAG 58.584 45.455 0.00 0.00 37.72 1.85
753 1906 2.413502 GCGCGAATCAACATGTGGTTAA 60.414 45.455 12.10 0.00 37.72 2.01
754 1907 1.129624 GCGCGAATCAACATGTGGTTA 59.870 47.619 12.10 0.00 37.72 2.85
755 1908 0.109781 GCGCGAATCAACATGTGGTT 60.110 50.000 12.10 0.00 41.47 3.67
756 1909 0.955428 AGCGCGAATCAACATGTGGT 60.955 50.000 12.10 0.00 0.00 4.16
757 1910 0.521867 CAGCGCGAATCAACATGTGG 60.522 55.000 12.10 0.00 0.00 4.17
758 1911 0.443478 TCAGCGCGAATCAACATGTG 59.557 50.000 12.10 0.00 0.00 3.21
759 1912 1.155889 TTCAGCGCGAATCAACATGT 58.844 45.000 12.10 0.00 0.00 3.21
760 1913 2.245795 TTTCAGCGCGAATCAACATG 57.754 45.000 12.10 0.00 32.32 3.21
761 1914 2.987413 TTTTCAGCGCGAATCAACAT 57.013 40.000 12.10 0.00 32.32 2.71
762 1915 2.583739 CATTTTCAGCGCGAATCAACA 58.416 42.857 12.10 0.00 32.32 3.33
763 1916 1.913403 CCATTTTCAGCGCGAATCAAC 59.087 47.619 12.10 0.00 32.32 3.18
764 1917 1.732077 GCCATTTTCAGCGCGAATCAA 60.732 47.619 12.10 8.07 32.32 2.57
765 1918 0.179166 GCCATTTTCAGCGCGAATCA 60.179 50.000 12.10 6.28 32.32 2.57
766 1919 2.570393 GCCATTTTCAGCGCGAATC 58.430 52.632 12.10 0.00 32.32 2.52
767 1920 4.792106 GCCATTTTCAGCGCGAAT 57.208 50.000 12.10 0.00 32.32 3.34
1556 2724 2.905075 TCTGACTGTAATGCCCAATCG 58.095 47.619 0.00 0.00 0.00 3.34
1718 2900 2.345341 GGAATGAAAGCGCCAAAAATCG 59.655 45.455 2.29 0.00 0.00 3.34
1721 2903 3.467374 AAGGAATGAAAGCGCCAAAAA 57.533 38.095 2.29 0.00 0.00 1.94
1802 2984 3.853671 GCAAACAGATACGCAAATTCCTG 59.146 43.478 0.00 0.00 0.00 3.86
2022 3204 6.731467 ACCCAACTTTCAAGTACATATCCAT 58.269 36.000 0.00 0.00 38.57 3.41
2094 3276 5.635278 TCTCAAGGATGATGCCATTAAGA 57.365 39.130 0.00 0.00 34.37 2.10
2416 3609 3.057946 CAGTAGCAACTTTCTTCCTTGCC 60.058 47.826 0.00 0.00 41.05 4.52
2462 3655 7.025963 GTGCCAGATGATCAAAAAGTTAAGAG 58.974 38.462 0.00 0.00 0.00 2.85
2787 3983 4.264638 GTGCGTGGGTTGTGGTGC 62.265 66.667 0.00 0.00 0.00 5.01
2797 3993 3.286751 CCTTGGGTGTGTGCGTGG 61.287 66.667 0.00 0.00 0.00 4.94
2904 4100 0.861837 CGTCATATGCGGCTTCTTCC 59.138 55.000 0.00 0.00 0.00 3.46
3181 4377 1.610554 GAGCCCGTGGTTAGGTGCTA 61.611 60.000 0.00 0.00 36.11 3.49
3318 4514 3.966543 CCCAGGGGTGCGAAAGGT 61.967 66.667 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.