Multiple sequence alignment - TraesCS4D01G196300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G196300 chr4D 100.000 4857 0 0 1 4857 341033072 341028216 0.000000e+00 8970.0
1 TraesCS4D01G196300 chr4D 94.570 221 10 2 294 513 12036311 12036530 1.670000e-89 340.0
2 TraesCS4D01G196300 chr4B 94.792 2477 101 15 565 3025 422525515 422523051 0.000000e+00 3834.0
3 TraesCS4D01G196300 chr4B 97.360 985 19 5 3332 4313 422522759 422521779 0.000000e+00 1668.0
4 TraesCS4D01G196300 chr4B 90.544 349 16 6 4367 4712 422521793 422521459 3.450000e-121 446.0
5 TraesCS4D01G196300 chr4B 94.248 226 7 2 3020 3239 422523002 422522777 1.670000e-89 340.0
6 TraesCS4D01G196300 chr4B 89.286 224 24 0 72 295 422525961 422525738 1.030000e-71 281.0
7 TraesCS4D01G196300 chr4B 88.112 143 5 1 4727 4857 422521481 422521339 5.030000e-35 159.0
8 TraesCS4D01G196300 chr4A 92.832 2553 112 28 513 3025 126418990 126421511 0.000000e+00 3635.0
9 TraesCS4D01G196300 chr4A 94.173 738 29 9 3453 4182 126422090 126422821 0.000000e+00 1112.0
10 TraesCS4D01G196300 chr4A 94.545 165 8 1 4412 4575 126423027 126423191 2.240000e-63 254.0
11 TraesCS4D01G196300 chr4A 86.161 224 31 0 72 295 126418774 126418997 4.860000e-60 243.0
12 TraesCS4D01G196300 chr4A 89.510 143 13 2 4171 4312 126422842 126422983 3.860000e-41 180.0
13 TraesCS4D01G196300 chr4A 90.551 127 7 1 3332 3458 126421926 126422047 3.890000e-36 163.0
14 TraesCS4D01G196300 chr4A 89.764 127 10 2 3020 3146 126421553 126421676 5.030000e-35 159.0
15 TraesCS4D01G196300 chr4A 79.372 223 43 3 72 292 571741186 571741407 2.340000e-33 154.0
16 TraesCS4D01G196300 chr4A 92.958 71 4 1 1 71 85198913 85198982 8.600000e-18 102.0
17 TraesCS4D01G196300 chr4A 92.857 42 3 0 513 554 665706893 665706934 1.460000e-05 62.1
18 TraesCS4D01G196300 chr6B 94.619 223 9 2 295 514 435582050 435581828 4.660000e-90 342.0
19 TraesCS4D01G196300 chr6B 95.833 72 3 0 1 72 644661406 644661477 3.070000e-22 117.0
20 TraesCS4D01G196300 chr7D 94.570 221 9 3 293 512 615443397 615443615 6.020000e-89 339.0
21 TraesCS4D01G196300 chr7D 88.158 76 6 2 1 76 5643221 5643293 2.410000e-13 87.9
22 TraesCS4D01G196300 chr7D 78.704 108 11 7 3227 3324 492219290 492219185 1.460000e-05 62.1
23 TraesCS4D01G196300 chr2B 94.545 220 11 1 296 514 39465610 39465829 6.020000e-89 339.0
24 TraesCS4D01G196300 chr2B 90.000 70 6 1 1 70 215776074 215776006 6.700000e-14 89.8
25 TraesCS4D01G196300 chr3D 94.545 220 9 2 295 513 103627975 103628192 2.170000e-88 337.0
26 TraesCS4D01G196300 chr1B 92.766 235 11 5 288 521 304122724 304122953 7.790000e-88 335.0
27 TraesCS4D01G196300 chr1B 93.694 222 13 1 294 514 651566726 651566505 1.010000e-86 331.0
28 TraesCS4D01G196300 chr1B 92.576 229 14 3 292 519 665021594 665021368 4.690000e-85 326.0
29 TraesCS4D01G196300 chr2D 93.043 230 10 4 291 519 431968502 431968278 1.010000e-86 331.0
30 TraesCS4D01G196300 chr2D 80.543 221 42 1 73 293 647564323 647564104 8.360000e-38 169.0
31 TraesCS4D01G196300 chr2D 94.118 51 3 0 3277 3327 594403901 594403851 1.450000e-10 78.7
32 TraesCS4D01G196300 chr5A 80.909 220 42 0 75 294 659894523 659894304 1.800000e-39 174.0
33 TraesCS4D01G196300 chr5A 87.324 71 9 0 1 71 52881824 52881754 1.120000e-11 82.4
34 TraesCS4D01G196300 chr6A 81.643 207 38 0 73 279 438276154 438276360 6.460000e-39 172.0
35 TraesCS4D01G196300 chr6D 79.817 218 44 0 74 291 304996210 304995993 5.030000e-35 159.0
36 TraesCS4D01G196300 chr5B 79.724 217 43 1 72 288 391914497 391914282 6.510000e-34 156.0
37 TraesCS4D01G196300 chr5B 84.158 101 11 5 3226 3324 247256123 247256220 5.180000e-15 93.5
38 TraesCS4D01G196300 chr5D 79.535 215 41 3 73 285 42862515 42862302 3.030000e-32 150.0
39 TraesCS4D01G196300 chr7A 94.444 72 4 0 1 72 250324425 250324496 1.430000e-20 111.0
40 TraesCS4D01G196300 chr7A 91.667 72 6 0 1 72 723398958 723399029 3.090000e-17 100.0
41 TraesCS4D01G196300 chr7A 90.278 72 7 0 1 72 722377488 722377417 1.440000e-15 95.3
42 TraesCS4D01G196300 chr2A 88.372 86 10 0 3239 3324 724414417 724414332 2.390000e-18 104.0
43 TraesCS4D01G196300 chr2A 93.878 49 1 2 3284 3331 718457059 718457012 6.740000e-09 73.1
44 TraesCS4D01G196300 chr2A 100.000 29 0 0 529 557 652601196 652601168 2.000000e-03 54.7
45 TraesCS4D01G196300 chr3A 90.000 50 4 1 4312 4361 19448313 19448361 4.060000e-06 63.9
46 TraesCS4D01G196300 chr1D 100.000 33 0 0 522 554 44648146 44648114 1.460000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G196300 chr4D 341028216 341033072 4856 True 8970.000000 8970 100.000000 1 4857 1 chr4D.!!$R1 4856
1 TraesCS4D01G196300 chr4B 422521339 422525961 4622 True 1121.333333 3834 92.390333 72 4857 6 chr4B.!!$R1 4785
2 TraesCS4D01G196300 chr4A 126418774 126423191 4417 False 820.857143 3635 91.076571 72 4575 7 chr4A.!!$F4 4503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.037590 AGTTAAGCATGGCAACCCGA 59.962 50.0 0.00 0.00 0.00 5.14 F
468 469 0.312416 TCCATGCAAAAACGTTCGGG 59.688 50.0 0.00 0.00 0.00 5.14 F
469 470 0.312416 CCATGCAAAAACGTTCGGGA 59.688 50.0 0.00 0.00 0.00 5.14 F
747 929 0.535102 AAATATCGGGCCCAGCGAAG 60.535 55.0 24.92 3.75 0.00 3.79 F
1070 1258 0.965866 TCCGCTCTCAACATCCGAGT 60.966 55.0 0.00 0.00 0.00 4.18 F
2681 2900 0.108233 CAGGCTGAGCTTGAGAGGAC 60.108 60.0 11.48 0.00 37.87 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2401 0.387622 CTGTGAAATGGCTGCCAACG 60.388 55.000 27.24 11.3 36.95 4.10 R
2320 2539 5.192927 TCAGAACCATCAGTGTCAAACTTT 58.807 37.500 0.00 0.0 36.83 2.66 R
2523 2742 7.179927 TCACAATCATCAAATGCAAAACTTG 57.820 32.000 0.00 0.0 0.00 3.16 R
2631 2850 1.287730 GCGACAAGCTGACTGGACTG 61.288 60.000 0.00 0.0 44.04 3.51 R
2972 3197 0.322906 CAACCAGCTTCCCCTTCCTC 60.323 60.000 0.00 0.0 0.00 3.71 R
4628 5165 1.685765 TGGCGAGGACCATGTAGCT 60.686 57.895 0.00 0.0 33.75 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.089784 CCGGGCGTTCTTTCGATG 58.910 61.111 0.00 0.00 0.00 3.84
18 19 2.399611 CGGGCGTTCTTTCGATGC 59.600 61.111 0.00 0.00 0.00 3.91
19 20 2.399611 GGGCGTTCTTTCGATGCG 59.600 61.111 0.00 0.00 0.00 4.73
20 21 2.098233 GGGCGTTCTTTCGATGCGA 61.098 57.895 0.00 0.00 0.00 5.10
21 22 1.429148 GGGCGTTCTTTCGATGCGAT 61.429 55.000 0.00 0.00 35.23 4.58
22 23 0.373716 GGCGTTCTTTCGATGCGATT 59.626 50.000 0.00 0.00 35.23 3.34
23 24 1.202031 GGCGTTCTTTCGATGCGATTT 60.202 47.619 0.00 0.00 35.23 2.17
24 25 2.505866 GCGTTCTTTCGATGCGATTTT 58.494 42.857 0.00 0.00 35.23 1.82
25 26 3.484557 GGCGTTCTTTCGATGCGATTTTA 60.485 43.478 0.00 0.00 35.23 1.52
26 27 4.271687 GCGTTCTTTCGATGCGATTTTAT 58.728 39.130 0.00 0.00 35.23 1.40
27 28 4.373096 GCGTTCTTTCGATGCGATTTTATC 59.627 41.667 0.00 0.00 35.23 1.75
28 29 5.489335 CGTTCTTTCGATGCGATTTTATCA 58.511 37.500 0.00 0.00 35.23 2.15
29 30 5.389714 CGTTCTTTCGATGCGATTTTATCAC 59.610 40.000 0.00 0.00 35.23 3.06
30 31 5.403897 TCTTTCGATGCGATTTTATCACC 57.596 39.130 0.00 0.00 35.23 4.02
31 32 5.116180 TCTTTCGATGCGATTTTATCACCT 58.884 37.500 0.00 0.00 35.23 4.00
32 33 5.234329 TCTTTCGATGCGATTTTATCACCTC 59.766 40.000 0.00 0.00 35.23 3.85
33 34 4.053469 TCGATGCGATTTTATCACCTCA 57.947 40.909 0.00 0.00 0.00 3.86
34 35 4.438148 TCGATGCGATTTTATCACCTCAA 58.562 39.130 0.00 0.00 0.00 3.02
35 36 5.056480 TCGATGCGATTTTATCACCTCAAT 58.944 37.500 0.00 0.00 0.00 2.57
36 37 6.220201 TCGATGCGATTTTATCACCTCAATA 58.780 36.000 0.00 0.00 0.00 1.90
37 38 6.873605 TCGATGCGATTTTATCACCTCAATAT 59.126 34.615 0.00 0.00 0.00 1.28
38 39 7.387673 TCGATGCGATTTTATCACCTCAATATT 59.612 33.333 0.00 0.00 0.00 1.28
39 40 8.017373 CGATGCGATTTTATCACCTCAATATTT 58.983 33.333 0.00 0.00 0.00 1.40
40 41 9.334693 GATGCGATTTTATCACCTCAATATTTC 57.665 33.333 0.00 0.00 0.00 2.17
41 42 8.219546 TGCGATTTTATCACCTCAATATTTCA 57.780 30.769 0.00 0.00 0.00 2.69
42 43 8.681806 TGCGATTTTATCACCTCAATATTTCAA 58.318 29.630 0.00 0.00 0.00 2.69
43 44 9.683069 GCGATTTTATCACCTCAATATTTCAAT 57.317 29.630 0.00 0.00 0.00 2.57
63 64 8.721019 TTCAATTCAATGAAATGCCCTTTATC 57.279 30.769 6.18 0.00 36.42 1.75
64 65 6.979817 TCAATTCAATGAAATGCCCTTTATCG 59.020 34.615 6.18 0.00 0.00 2.92
65 66 6.713762 ATTCAATGAAATGCCCTTTATCGA 57.286 33.333 0.00 0.00 0.00 3.59
66 67 6.522625 TTCAATGAAATGCCCTTTATCGAA 57.477 33.333 0.00 0.00 0.00 3.71
67 68 6.522625 TCAATGAAATGCCCTTTATCGAAA 57.477 33.333 0.00 0.00 0.00 3.46
68 69 6.929625 TCAATGAAATGCCCTTTATCGAAAA 58.070 32.000 0.00 0.00 0.00 2.29
69 70 7.382110 TCAATGAAATGCCCTTTATCGAAAAA 58.618 30.769 0.00 0.00 0.00 1.94
130 131 1.453015 TTGTTCTGGTGCGCTGGTT 60.453 52.632 9.73 0.00 0.00 3.67
158 159 2.159517 GGCCTTAGCATGACAACTTTCG 60.160 50.000 0.00 0.00 42.56 3.46
161 162 4.201724 GCCTTAGCATGACAACTTTCGTAG 60.202 45.833 0.00 0.00 39.53 3.51
168 169 5.061064 GCATGACAACTTTCGTAGTGTCTAG 59.939 44.000 0.00 0.00 37.12 2.43
188 189 1.457009 TACAACAAGGTTTGCCCCGC 61.457 55.000 0.00 0.00 34.57 6.13
209 210 1.008327 TCCAGTGAGGGAGAGGCAATA 59.992 52.381 0.00 0.00 38.24 1.90
211 212 2.441001 CCAGTGAGGGAGAGGCAATAAT 59.559 50.000 0.00 0.00 0.00 1.28
235 236 2.654912 CGCGTTTTCGGTTCGCTCT 61.655 57.895 0.00 0.00 46.31 4.09
270 271 0.388649 CGCTTGCTGGTCTACGAACT 60.389 55.000 0.00 0.00 0.00 3.01
310 311 9.369904 TGTTACTTTTACGGTAATGATAACTCC 57.630 33.333 18.94 0.00 32.78 3.85
311 312 8.820933 GTTACTTTTACGGTAATGATAACTCCC 58.179 37.037 0.73 0.00 32.78 4.30
312 313 6.044682 ACTTTTACGGTAATGATAACTCCCG 58.955 40.000 0.73 0.00 41.09 5.14
313 314 5.850557 TTTACGGTAATGATAACTCCCGA 57.149 39.130 0.73 0.00 38.75 5.14
314 315 5.850557 TTACGGTAATGATAACTCCCGAA 57.149 39.130 2.57 0.00 38.75 4.30
315 316 4.050852 ACGGTAATGATAACTCCCGAAC 57.949 45.455 2.57 0.00 38.75 3.95
316 317 3.047796 CGGTAATGATAACTCCCGAACG 58.952 50.000 0.00 0.00 37.66 3.95
317 318 3.489738 CGGTAATGATAACTCCCGAACGT 60.490 47.826 0.00 0.00 37.66 3.99
318 319 4.436332 GGTAATGATAACTCCCGAACGTT 58.564 43.478 0.00 0.00 0.00 3.99
319 320 4.505556 GGTAATGATAACTCCCGAACGTTC 59.494 45.833 18.47 18.47 0.00 3.95
320 321 3.880047 ATGATAACTCCCGAACGTTCA 57.120 42.857 26.71 7.82 0.00 3.18
321 322 3.226346 TGATAACTCCCGAACGTTCAG 57.774 47.619 26.71 18.68 0.00 3.02
322 323 2.094390 TGATAACTCCCGAACGTTCAGG 60.094 50.000 26.71 24.49 0.00 3.86
323 324 1.619654 TAACTCCCGAACGTTCAGGA 58.380 50.000 27.33 27.33 32.98 3.86
324 325 4.891566 CTCCCGAACGTTCAGGAG 57.108 61.111 34.68 34.68 43.33 3.69
325 326 1.965219 CTCCCGAACGTTCAGGAGT 59.035 57.895 36.73 2.80 43.68 3.85
326 327 0.317479 CTCCCGAACGTTCAGGAGTT 59.683 55.000 36.73 2.03 43.68 3.01
327 328 1.542915 CTCCCGAACGTTCAGGAGTTA 59.457 52.381 36.73 17.48 43.68 2.24
328 329 1.962807 TCCCGAACGTTCAGGAGTTAA 59.037 47.619 25.93 6.94 30.51 2.01
329 330 2.029649 TCCCGAACGTTCAGGAGTTAAG 60.030 50.000 25.93 14.02 30.51 1.85
330 331 1.725164 CCGAACGTTCAGGAGTTAAGC 59.275 52.381 26.71 0.00 0.00 3.09
331 332 2.400399 CGAACGTTCAGGAGTTAAGCA 58.600 47.619 26.71 0.00 0.00 3.91
332 333 2.993899 CGAACGTTCAGGAGTTAAGCAT 59.006 45.455 26.71 0.00 0.00 3.79
333 334 3.181530 CGAACGTTCAGGAGTTAAGCATG 60.182 47.826 26.71 2.64 0.00 4.06
334 335 2.699954 ACGTTCAGGAGTTAAGCATGG 58.300 47.619 0.00 0.00 0.00 3.66
335 336 1.398390 CGTTCAGGAGTTAAGCATGGC 59.602 52.381 0.00 0.00 0.00 4.40
336 337 2.436417 GTTCAGGAGTTAAGCATGGCA 58.564 47.619 0.00 0.00 0.00 4.92
337 338 2.819608 GTTCAGGAGTTAAGCATGGCAA 59.180 45.455 0.00 0.00 0.00 4.52
338 339 2.436417 TCAGGAGTTAAGCATGGCAAC 58.564 47.619 0.00 0.00 0.00 4.17
339 340 1.474077 CAGGAGTTAAGCATGGCAACC 59.526 52.381 0.00 0.00 0.00 3.77
340 341 0.817654 GGAGTTAAGCATGGCAACCC 59.182 55.000 0.00 0.00 0.00 4.11
341 342 0.451783 GAGTTAAGCATGGCAACCCG 59.548 55.000 0.00 0.00 0.00 5.28
342 343 0.037590 AGTTAAGCATGGCAACCCGA 59.962 50.000 0.00 0.00 0.00 5.14
343 344 0.885196 GTTAAGCATGGCAACCCGAA 59.115 50.000 0.00 0.00 0.00 4.30
344 345 0.885196 TTAAGCATGGCAACCCGAAC 59.115 50.000 0.00 0.00 0.00 3.95
345 346 1.302383 TAAGCATGGCAACCCGAACG 61.302 55.000 0.00 0.00 0.00 3.95
346 347 4.114997 GCATGGCAACCCGAACGG 62.115 66.667 6.25 6.25 37.81 4.44
357 358 2.390427 CCGAACGGGTTTAGATGGC 58.610 57.895 5.25 0.00 0.00 4.40
358 359 0.391927 CCGAACGGGTTTAGATGGCA 60.392 55.000 5.25 0.00 0.00 4.92
359 360 1.444836 CGAACGGGTTTAGATGGCAA 58.555 50.000 0.00 0.00 0.00 4.52
360 361 1.396996 CGAACGGGTTTAGATGGCAAG 59.603 52.381 0.00 0.00 0.00 4.01
361 362 2.433436 GAACGGGTTTAGATGGCAAGT 58.567 47.619 0.00 0.00 0.00 3.16
362 363 2.579410 ACGGGTTTAGATGGCAAGTT 57.421 45.000 0.00 0.00 0.00 2.66
363 364 2.871453 ACGGGTTTAGATGGCAAGTTT 58.129 42.857 0.00 0.00 0.00 2.66
364 365 4.023726 ACGGGTTTAGATGGCAAGTTTA 57.976 40.909 0.00 0.00 0.00 2.01
365 366 4.007659 ACGGGTTTAGATGGCAAGTTTAG 58.992 43.478 0.00 0.00 0.00 1.85
366 367 4.007659 CGGGTTTAGATGGCAAGTTTAGT 58.992 43.478 0.00 0.00 0.00 2.24
367 368 4.457949 CGGGTTTAGATGGCAAGTTTAGTT 59.542 41.667 0.00 0.00 0.00 2.24
368 369 5.048294 CGGGTTTAGATGGCAAGTTTAGTTT 60.048 40.000 0.00 0.00 0.00 2.66
369 370 6.156519 GGGTTTAGATGGCAAGTTTAGTTTG 58.843 40.000 0.00 0.00 0.00 2.93
376 377 3.602390 GCAAGTTTAGTTTGCGTGAGA 57.398 42.857 0.00 0.00 41.16 3.27
377 378 4.147219 GCAAGTTTAGTTTGCGTGAGAT 57.853 40.909 0.00 0.00 41.16 2.75
378 379 4.537015 GCAAGTTTAGTTTGCGTGAGATT 58.463 39.130 0.00 0.00 41.16 2.40
379 380 5.685841 GCAAGTTTAGTTTGCGTGAGATTA 58.314 37.500 0.00 0.00 41.16 1.75
380 381 5.790495 GCAAGTTTAGTTTGCGTGAGATTAG 59.210 40.000 0.00 0.00 41.16 1.73
381 382 6.307155 CAAGTTTAGTTTGCGTGAGATTAGG 58.693 40.000 0.00 0.00 0.00 2.69
382 383 4.935808 AGTTTAGTTTGCGTGAGATTAGGG 59.064 41.667 0.00 0.00 0.00 3.53
383 384 4.811969 TTAGTTTGCGTGAGATTAGGGA 57.188 40.909 0.00 0.00 0.00 4.20
384 385 3.695830 AGTTTGCGTGAGATTAGGGAA 57.304 42.857 0.00 0.00 0.00 3.97
385 386 4.015872 AGTTTGCGTGAGATTAGGGAAA 57.984 40.909 0.00 0.00 0.00 3.13
386 387 3.751698 AGTTTGCGTGAGATTAGGGAAAC 59.248 43.478 6.39 6.39 42.90 2.78
387 388 3.410631 TTGCGTGAGATTAGGGAAACA 57.589 42.857 0.00 0.00 0.00 2.83
388 389 3.627395 TGCGTGAGATTAGGGAAACAT 57.373 42.857 0.00 0.00 0.00 2.71
389 390 3.270027 TGCGTGAGATTAGGGAAACATG 58.730 45.455 0.00 0.00 0.00 3.21
390 391 2.614057 GCGTGAGATTAGGGAAACATGG 59.386 50.000 0.00 0.00 0.00 3.66
391 392 2.614057 CGTGAGATTAGGGAAACATGGC 59.386 50.000 0.00 0.00 0.00 4.40
392 393 3.620488 GTGAGATTAGGGAAACATGGCA 58.380 45.455 0.00 0.00 0.00 4.92
393 394 4.016444 GTGAGATTAGGGAAACATGGCAA 58.984 43.478 0.00 0.00 0.00 4.52
394 395 4.646492 GTGAGATTAGGGAAACATGGCAAT 59.354 41.667 0.00 0.00 0.00 3.56
395 396 5.127682 GTGAGATTAGGGAAACATGGCAATT 59.872 40.000 0.00 0.00 0.00 2.32
396 397 5.721000 TGAGATTAGGGAAACATGGCAATTT 59.279 36.000 0.00 0.00 0.00 1.82
397 398 6.213195 TGAGATTAGGGAAACATGGCAATTTT 59.787 34.615 0.00 0.00 0.00 1.82
398 399 6.643388 AGATTAGGGAAACATGGCAATTTTC 58.357 36.000 13.20 13.20 0.00 2.29
399 400 6.441604 AGATTAGGGAAACATGGCAATTTTCT 59.558 34.615 18.32 13.01 31.21 2.52
400 401 4.276058 AGGGAAACATGGCAATTTTCTG 57.724 40.909 18.32 3.57 31.21 3.02
401 402 3.903090 AGGGAAACATGGCAATTTTCTGA 59.097 39.130 18.32 0.00 31.21 3.27
402 403 3.996363 GGGAAACATGGCAATTTTCTGAC 59.004 43.478 18.32 9.54 31.21 3.51
403 404 4.502950 GGGAAACATGGCAATTTTCTGACA 60.503 41.667 18.32 0.00 39.14 3.58
404 405 5.055812 GGAAACATGGCAATTTTCTGACAA 58.944 37.500 18.32 0.00 38.03 3.18
405 406 5.526846 GGAAACATGGCAATTTTCTGACAAA 59.473 36.000 18.32 0.00 38.03 2.83
406 407 6.038050 GGAAACATGGCAATTTTCTGACAAAA 59.962 34.615 18.32 0.00 38.03 2.44
407 408 6.998968 AACATGGCAATTTTCTGACAAAAA 57.001 29.167 0.00 0.00 38.03 1.94
428 429 5.524511 AAAACGAAAAAGGACAAAGTTGC 57.475 34.783 0.00 0.00 0.00 4.17
429 430 2.792749 ACGAAAAAGGACAAAGTTGCG 58.207 42.857 0.00 0.00 0.00 4.85
430 431 2.420722 ACGAAAAAGGACAAAGTTGCGA 59.579 40.909 0.00 0.00 0.00 5.10
431 432 3.066203 ACGAAAAAGGACAAAGTTGCGAT 59.934 39.130 0.00 0.00 0.00 4.58
432 433 3.664025 CGAAAAAGGACAAAGTTGCGATC 59.336 43.478 0.00 0.00 0.00 3.69
433 434 3.643159 AAAAGGACAAAGTTGCGATCC 57.357 42.857 0.00 0.00 0.00 3.36
434 435 1.534729 AAGGACAAAGTTGCGATCCC 58.465 50.000 0.00 0.00 0.00 3.85
435 436 0.693049 AGGACAAAGTTGCGATCCCT 59.307 50.000 0.00 0.00 0.00 4.20
436 437 1.906574 AGGACAAAGTTGCGATCCCTA 59.093 47.619 0.00 0.00 0.00 3.53
437 438 2.505819 AGGACAAAGTTGCGATCCCTAT 59.494 45.455 0.00 0.00 0.00 2.57
438 439 2.614057 GGACAAAGTTGCGATCCCTATG 59.386 50.000 0.00 0.00 0.00 2.23
439 440 3.531538 GACAAAGTTGCGATCCCTATGA 58.468 45.455 0.00 0.00 0.00 2.15
440 441 3.938963 GACAAAGTTGCGATCCCTATGAA 59.061 43.478 0.00 0.00 0.00 2.57
441 442 3.689649 ACAAAGTTGCGATCCCTATGAAC 59.310 43.478 0.00 0.00 0.00 3.18
442 443 3.914426 AAGTTGCGATCCCTATGAACT 57.086 42.857 0.00 0.00 0.00 3.01
443 444 5.116180 CAAAGTTGCGATCCCTATGAACTA 58.884 41.667 0.00 0.00 0.00 2.24
444 445 5.353394 AAGTTGCGATCCCTATGAACTAA 57.647 39.130 0.00 0.00 0.00 2.24
445 446 5.353394 AGTTGCGATCCCTATGAACTAAA 57.647 39.130 0.00 0.00 0.00 1.85
446 447 5.360591 AGTTGCGATCCCTATGAACTAAAG 58.639 41.667 0.00 0.00 0.00 1.85
447 448 5.104900 AGTTGCGATCCCTATGAACTAAAGT 60.105 40.000 0.00 0.00 0.00 2.66
448 449 5.353394 TGCGATCCCTATGAACTAAAGTT 57.647 39.130 0.00 0.00 41.64 2.66
449 450 5.741011 TGCGATCCCTATGAACTAAAGTTT 58.259 37.500 0.00 0.00 38.56 2.66
450 451 5.815740 TGCGATCCCTATGAACTAAAGTTTC 59.184 40.000 0.00 0.00 38.56 2.78
451 452 5.236695 GCGATCCCTATGAACTAAAGTTTCC 59.763 44.000 0.00 0.00 38.56 3.13
452 453 6.346096 CGATCCCTATGAACTAAAGTTTCCA 58.654 40.000 0.00 0.00 38.56 3.53
453 454 6.992715 CGATCCCTATGAACTAAAGTTTCCAT 59.007 38.462 0.00 0.33 38.56 3.41
454 455 7.041780 CGATCCCTATGAACTAAAGTTTCCATG 60.042 40.741 0.00 0.00 38.56 3.66
455 456 5.885912 TCCCTATGAACTAAAGTTTCCATGC 59.114 40.000 0.00 0.00 38.56 4.06
456 457 5.652014 CCCTATGAACTAAAGTTTCCATGCA 59.348 40.000 0.00 0.00 38.56 3.96
457 458 6.152661 CCCTATGAACTAAAGTTTCCATGCAA 59.847 38.462 0.00 0.00 38.56 4.08
458 459 7.309744 CCCTATGAACTAAAGTTTCCATGCAAA 60.310 37.037 0.00 0.00 38.56 3.68
459 460 8.087750 CCTATGAACTAAAGTTTCCATGCAAAA 58.912 33.333 0.00 0.00 38.56 2.44
460 461 9.474920 CTATGAACTAAAGTTTCCATGCAAAAA 57.525 29.630 0.00 0.00 38.56 1.94
461 462 7.532682 TGAACTAAAGTTTCCATGCAAAAAC 57.467 32.000 12.34 12.34 38.56 2.43
462 463 6.254589 TGAACTAAAGTTTCCATGCAAAAACG 59.745 34.615 13.66 5.83 39.72 3.60
463 464 5.656480 ACTAAAGTTTCCATGCAAAAACGT 58.344 33.333 13.66 9.81 39.72 3.99
464 465 6.103330 ACTAAAGTTTCCATGCAAAAACGTT 58.897 32.000 19.46 19.46 39.72 3.99
465 466 5.463499 AAAGTTTCCATGCAAAAACGTTC 57.537 34.783 0.00 0.00 39.72 3.95
466 467 3.112580 AGTTTCCATGCAAAAACGTTCG 58.887 40.909 0.00 0.00 39.72 3.95
467 468 2.126914 TTCCATGCAAAAACGTTCGG 57.873 45.000 0.00 0.00 0.00 4.30
468 469 0.312416 TCCATGCAAAAACGTTCGGG 59.688 50.000 0.00 0.00 0.00 5.14
469 470 0.312416 CCATGCAAAAACGTTCGGGA 59.688 50.000 0.00 0.00 0.00 5.14
470 471 1.404477 CATGCAAAAACGTTCGGGAC 58.596 50.000 0.00 0.00 0.00 4.46
486 487 3.150848 GGGACGAAATGCTCAAAATCC 57.849 47.619 0.00 0.00 0.00 3.01
487 488 2.477863 GGGACGAAATGCTCAAAATCCG 60.478 50.000 0.00 0.00 0.00 4.18
488 489 2.418628 GGACGAAATGCTCAAAATCCGA 59.581 45.455 0.00 0.00 0.00 4.55
489 490 3.119990 GGACGAAATGCTCAAAATCCGAA 60.120 43.478 0.00 0.00 0.00 4.30
490 491 3.821841 ACGAAATGCTCAAAATCCGAAC 58.178 40.909 0.00 0.00 0.00 3.95
491 492 2.840176 CGAAATGCTCAAAATCCGAACG 59.160 45.455 0.00 0.00 0.00 3.95
492 493 3.666902 CGAAATGCTCAAAATCCGAACGT 60.667 43.478 0.00 0.00 0.00 3.99
493 494 3.915437 AATGCTCAAAATCCGAACGTT 57.085 38.095 0.00 0.00 0.00 3.99
494 495 2.961522 TGCTCAAAATCCGAACGTTC 57.038 45.000 18.47 18.47 0.00 3.95
506 507 1.657094 CGAACGTTCGGGAGTTATTGG 59.343 52.381 36.53 9.59 46.30 3.16
507 508 2.671914 CGAACGTTCGGGAGTTATTGGA 60.672 50.000 36.53 0.00 46.30 3.53
508 509 3.528532 GAACGTTCGGGAGTTATTGGAT 58.471 45.455 13.36 0.00 0.00 3.41
509 510 3.622166 ACGTTCGGGAGTTATTGGATT 57.378 42.857 0.00 0.00 0.00 3.01
510 511 3.528532 ACGTTCGGGAGTTATTGGATTC 58.471 45.455 0.00 0.00 0.00 2.52
511 512 2.870411 CGTTCGGGAGTTATTGGATTCC 59.130 50.000 0.00 0.00 0.00 3.01
512 513 3.431766 CGTTCGGGAGTTATTGGATTCCT 60.432 47.826 3.95 0.00 0.00 3.36
513 514 4.202182 CGTTCGGGAGTTATTGGATTCCTA 60.202 45.833 3.95 0.00 0.00 2.94
514 515 4.950205 TCGGGAGTTATTGGATTCCTAC 57.050 45.455 3.95 0.00 0.00 3.18
515 516 4.553678 TCGGGAGTTATTGGATTCCTACT 58.446 43.478 3.95 2.59 0.00 2.57
516 517 4.966805 TCGGGAGTTATTGGATTCCTACTT 59.033 41.667 3.95 0.00 0.00 2.24
517 518 5.427481 TCGGGAGTTATTGGATTCCTACTTT 59.573 40.000 3.95 0.00 0.00 2.66
747 929 0.535102 AAATATCGGGCCCAGCGAAG 60.535 55.000 24.92 3.75 0.00 3.79
807 989 8.992073 GCCAGTTCAAAATATTTCAAACTCAAT 58.008 29.630 18.34 3.71 0.00 2.57
862 1044 2.858974 CCACCACCTCCCCCACTT 60.859 66.667 0.00 0.00 0.00 3.16
1043 1231 4.644103 TCCGAGGTAAGATAAGAAACCG 57.356 45.455 0.00 0.00 37.09 4.44
1070 1258 0.965866 TCCGCTCTCAACATCCGAGT 60.966 55.000 0.00 0.00 0.00 4.18
1180 1368 2.342279 CGAAGCCCAAGTCCGTCA 59.658 61.111 0.00 0.00 0.00 4.35
1273 1467 4.537433 AAGGATCGCTGCGGCTCC 62.537 66.667 26.45 26.45 36.09 4.70
1291 1485 4.443598 GGCTCCGGAATCTCTAGATTTGTT 60.444 45.833 5.23 0.00 44.14 2.83
1294 1492 4.876107 TCCGGAATCTCTAGATTTGTTTGC 59.124 41.667 0.00 0.00 44.14 3.68
1299 1497 4.990543 TCTCTAGATTTGTTTGCGTGTG 57.009 40.909 0.00 0.00 0.00 3.82
1300 1498 4.627058 TCTCTAGATTTGTTTGCGTGTGA 58.373 39.130 0.00 0.00 0.00 3.58
1301 1499 4.447724 TCTCTAGATTTGTTTGCGTGTGAC 59.552 41.667 0.00 0.00 0.00 3.67
1309 1511 1.663643 GTTTGCGTGTGACTCTGTTCA 59.336 47.619 0.00 0.00 0.00 3.18
1311 1513 2.238942 TGCGTGTGACTCTGTTCATT 57.761 45.000 0.00 0.00 0.00 2.57
1321 1523 5.239525 GTGACTCTGTTCATTTTGCTTACCT 59.760 40.000 0.00 0.00 0.00 3.08
1323 1525 7.119846 GTGACTCTGTTCATTTTGCTTACCTAT 59.880 37.037 0.00 0.00 0.00 2.57
1326 1532 5.125417 TCTGTTCATTTTGCTTACCTATGGC 59.875 40.000 0.00 0.00 0.00 4.40
1336 1542 2.710096 TACCTATGGCCTGCTGTTTC 57.290 50.000 3.32 0.00 0.00 2.78
1337 1543 0.995024 ACCTATGGCCTGCTGTTTCT 59.005 50.000 3.32 0.00 0.00 2.52
1377 1583 2.743928 CTGTCCGGAGCAGCAACC 60.744 66.667 3.06 0.00 0.00 3.77
1553 1759 2.045536 CCACCTCAGCAGAAGCCC 60.046 66.667 0.00 0.00 43.56 5.19
1994 2203 5.940470 CCAAGCTCAGGTAATAGTTCAAAGT 59.060 40.000 0.00 0.00 0.00 2.66
2320 2539 1.886222 GCCATGGCAGTGAACCAACTA 60.886 52.381 32.08 0.00 41.49 2.24
2346 2565 5.297776 AGTTTGACACTGATGGTTCTGAAAG 59.702 40.000 0.00 0.00 32.83 2.62
2523 2742 2.670509 GCTTTGAGCAGAAACTGGATGC 60.671 50.000 0.00 0.00 41.89 3.91
2631 2850 2.919228 AGGTCCTTGTGACAGTGAAAC 58.081 47.619 0.00 0.00 46.38 2.78
2644 2863 1.765314 AGTGAAACAGTCCAGTCAGCT 59.235 47.619 0.00 0.00 41.43 4.24
2681 2900 0.108233 CAGGCTGAGCTTGAGAGGAC 60.108 60.000 11.48 0.00 37.87 3.85
2776 2998 1.230635 GGAGCTTGTCTGCAAAGCGA 61.231 55.000 14.29 0.00 35.46 4.93
2778 3000 0.801251 AGCTTGTCTGCAAAGCGATC 59.199 50.000 14.29 0.00 35.46 3.69
2819 3041 0.868406 CAACAACTCTCCGTTCTGCC 59.132 55.000 0.00 0.00 32.27 4.85
2972 3197 4.763073 TGGTGATTCTAGCAGAGTGATTG 58.237 43.478 0.00 0.00 0.00 2.67
2992 3217 1.068352 AGGAAGGGGAAGCTGGTTGT 61.068 55.000 0.00 0.00 0.00 3.32
3025 3250 4.201851 GGTATGTTAACATGTGCAGAGCTG 60.202 45.833 27.62 0.00 37.15 4.24
3061 3340 3.795101 CGATGAAATTGAAAGAGCATGGC 59.205 43.478 0.00 0.00 0.00 4.40
3064 3343 3.444742 TGAAATTGAAAGAGCATGGCGAT 59.555 39.130 0.00 0.00 0.00 4.58
3084 3363 4.674362 CGATTATGATGATGCTGCCATTGG 60.674 45.833 0.00 0.00 0.00 3.16
3236 3657 4.184629 CAGAAAATCTTGTACTCCCTCCG 58.815 47.826 0.00 0.00 0.00 4.63
3239 3660 5.661759 AGAAAATCTTGTACTCCCTCCGTAT 59.338 40.000 0.00 0.00 0.00 3.06
3240 3661 5.532664 AAATCTTGTACTCCCTCCGTATC 57.467 43.478 0.00 0.00 0.00 2.24
3241 3662 2.941480 TCTTGTACTCCCTCCGTATCC 58.059 52.381 0.00 0.00 0.00 2.59
3242 3663 2.242965 TCTTGTACTCCCTCCGTATCCA 59.757 50.000 0.00 0.00 0.00 3.41
3243 3664 2.062971 TGTACTCCCTCCGTATCCAC 57.937 55.000 0.00 0.00 0.00 4.02
3245 3666 2.291735 TGTACTCCCTCCGTATCCACAA 60.292 50.000 0.00 0.00 0.00 3.33
3246 3667 2.176247 ACTCCCTCCGTATCCACAAT 57.824 50.000 0.00 0.00 0.00 2.71
3247 3668 3.323774 ACTCCCTCCGTATCCACAATA 57.676 47.619 0.00 0.00 0.00 1.90
3248 3669 3.649843 ACTCCCTCCGTATCCACAATAA 58.350 45.455 0.00 0.00 0.00 1.40
3249 3670 3.641906 ACTCCCTCCGTATCCACAATAAG 59.358 47.826 0.00 0.00 0.00 1.73
3266 3687 8.406172 CACAATAAGTGTTGCAGTTTTAAACT 57.594 30.769 4.30 4.30 43.40 2.66
3267 3688 9.509855 CACAATAAGTGTTGCAGTTTTAAACTA 57.490 29.630 10.21 0.00 43.40 2.24
3275 3696 9.946165 GTGTTGCAGTTTTAAACTAAGATTAGT 57.054 29.630 10.21 0.00 45.43 2.24
3300 3721 9.944663 GTTCAATTATAGTTCAAAACTGTGACA 57.055 29.630 2.65 0.00 42.84 3.58
3301 3722 9.944663 TTCAATTATAGTTCAAAACTGTGACAC 57.055 29.630 0.00 0.00 42.84 3.67
3302 3723 9.337396 TCAATTATAGTTCAAAACTGTGACACT 57.663 29.630 7.20 0.00 42.84 3.55
3303 3724 9.950680 CAATTATAGTTCAAAACTGTGACACTT 57.049 29.630 7.20 0.00 42.84 3.16
3310 3731 9.337396 AGTTCAAAACTGTGACACTTATTATGA 57.663 29.630 7.20 2.33 41.01 2.15
3311 3732 9.944663 GTTCAAAACTGTGACACTTATTATGAA 57.055 29.630 7.20 7.88 0.00 2.57
3312 3733 9.944663 TTCAAAACTGTGACACTTATTATGAAC 57.055 29.630 7.20 0.00 0.00 3.18
3313 3734 8.279800 TCAAAACTGTGACACTTATTATGAACG 58.720 33.333 7.20 0.00 0.00 3.95
3314 3735 6.721571 AACTGTGACACTTATTATGAACGG 57.278 37.500 7.20 0.00 0.00 4.44
3315 3736 6.032956 ACTGTGACACTTATTATGAACGGA 57.967 37.500 7.20 0.00 0.00 4.69
3316 3737 6.460781 ACTGTGACACTTATTATGAACGGAA 58.539 36.000 7.20 0.00 0.00 4.30
3317 3738 6.590292 ACTGTGACACTTATTATGAACGGAAG 59.410 38.462 7.20 0.00 0.00 3.46
3318 3739 5.872617 TGTGACACTTATTATGAACGGAAGG 59.127 40.000 7.20 0.00 0.00 3.46
3319 3740 5.293569 GTGACACTTATTATGAACGGAAGGG 59.706 44.000 0.00 0.00 0.00 3.95
3320 3741 5.188163 TGACACTTATTATGAACGGAAGGGA 59.812 40.000 0.00 0.00 0.00 4.20
3321 3742 5.671493 ACACTTATTATGAACGGAAGGGAG 58.329 41.667 0.00 0.00 0.00 4.30
3322 3743 5.189145 ACACTTATTATGAACGGAAGGGAGT 59.811 40.000 0.00 0.00 0.00 3.85
3323 3744 6.381994 ACACTTATTATGAACGGAAGGGAGTA 59.618 38.462 0.00 0.00 0.00 2.59
3324 3745 6.924060 CACTTATTATGAACGGAAGGGAGTAG 59.076 42.308 0.00 0.00 0.00 2.57
3325 3746 6.610425 ACTTATTATGAACGGAAGGGAGTAGT 59.390 38.462 0.00 0.00 0.00 2.73
3326 3747 7.781693 ACTTATTATGAACGGAAGGGAGTAGTA 59.218 37.037 0.00 0.00 0.00 1.82
3327 3748 8.716674 TTATTATGAACGGAAGGGAGTAGTAT 57.283 34.615 0.00 0.00 0.00 2.12
3328 3749 9.812347 TTATTATGAACGGAAGGGAGTAGTATA 57.188 33.333 0.00 0.00 0.00 1.47
3329 3750 8.896722 ATTATGAACGGAAGGGAGTAGTATAT 57.103 34.615 0.00 0.00 0.00 0.86
3330 3751 9.986157 ATTATGAACGGAAGGGAGTAGTATATA 57.014 33.333 0.00 0.00 0.00 0.86
3409 3830 3.436496 CTCTTTACACTAGGCACTACGC 58.564 50.000 0.00 0.00 41.75 4.42
3554 4026 6.149308 CGGATTTCACAGCAATATAGGCATTA 59.851 38.462 2.55 0.00 0.00 1.90
3760 4239 7.624360 TGGTACTGTTCAGGCAAATAATTAG 57.376 36.000 4.82 0.00 0.00 1.73
4313 4828 9.000486 ACTTTTTAGTCAGAAATTGGTAGCTAC 58.000 33.333 15.88 15.88 0.00 3.58
4314 4829 9.220767 CTTTTTAGTCAGAAATTGGTAGCTACT 57.779 33.333 22.74 2.89 0.00 2.57
4316 4831 5.346181 AGTCAGAAATTGGTAGCTACTCC 57.654 43.478 22.74 8.60 0.00 3.85
4319 4834 5.813157 GTCAGAAATTGGTAGCTACTCCTTC 59.187 44.000 22.74 18.02 0.00 3.46
4320 4835 5.104900 TCAGAAATTGGTAGCTACTCCTTCC 60.105 44.000 22.74 6.36 0.00 3.46
4321 4836 3.821421 AATTGGTAGCTACTCCTTCCG 57.179 47.619 22.74 0.00 0.00 4.30
4322 4837 2.226962 TTGGTAGCTACTCCTTCCGT 57.773 50.000 22.74 0.00 0.00 4.69
4323 4838 1.760192 TGGTAGCTACTCCTTCCGTC 58.240 55.000 22.74 4.13 0.00 4.79
4324 4839 1.031235 GGTAGCTACTCCTTCCGTCC 58.969 60.000 22.74 0.00 0.00 4.79
4325 4840 0.662085 GTAGCTACTCCTTCCGTCCG 59.338 60.000 16.88 0.00 0.00 4.79
4326 4841 0.543277 TAGCTACTCCTTCCGTCCGA 59.457 55.000 0.00 0.00 0.00 4.55
4327 4842 0.323178 AGCTACTCCTTCCGTCCGAA 60.323 55.000 0.00 0.00 0.00 4.30
4328 4843 0.529378 GCTACTCCTTCCGTCCGAAA 59.471 55.000 0.00 0.00 0.00 3.46
4329 4844 1.067354 GCTACTCCTTCCGTCCGAAAA 60.067 52.381 0.00 0.00 0.00 2.29
4330 4845 2.611224 GCTACTCCTTCCGTCCGAAAAA 60.611 50.000 0.00 0.00 0.00 1.94
4359 4874 9.638239 TTTGTTCCTCAAATGAATGTATTTAGC 57.362 29.630 0.00 0.00 40.56 3.09
4360 4875 8.347004 TGTTCCTCAAATGAATGTATTTAGCA 57.653 30.769 0.00 0.00 0.00 3.49
4361 4876 8.970020 TGTTCCTCAAATGAATGTATTTAGCAT 58.030 29.630 0.00 0.00 0.00 3.79
4362 4877 9.807649 GTTCCTCAAATGAATGTATTTAGCATT 57.192 29.630 0.00 0.00 39.04 3.56
4380 4895 5.254339 GCATTAAGCAGAAATTGGTAGCT 57.746 39.130 0.00 0.00 44.79 3.32
4381 4896 6.377327 GCATTAAGCAGAAATTGGTAGCTA 57.623 37.500 0.00 0.00 44.79 3.32
4390 4905 7.119846 AGCAGAAATTGGTAGCTACTAGTTTTG 59.880 37.037 24.66 22.65 35.30 2.44
4554 5091 8.579850 AAGCAAGGAAAACAATATATGAGTGA 57.420 30.769 0.00 0.00 0.00 3.41
4608 5145 2.404186 ACGAGGCGACGCTCATGTA 61.404 57.895 20.77 0.00 36.70 2.29
4614 5151 2.890371 GACGCTCATGTACCGGGT 59.110 61.111 6.32 4.46 0.00 5.28
4680 5217 1.885388 TCGACACGGCACAAGTTGG 60.885 57.895 7.96 0.00 0.00 3.77
4694 5231 1.216710 GTTGGCGACTCTCTCTGGG 59.783 63.158 0.00 0.00 0.00 4.45
4695 5232 1.228894 TTGGCGACTCTCTCTGGGT 60.229 57.895 0.00 0.00 0.00 4.51
4696 5233 1.251527 TTGGCGACTCTCTCTGGGTC 61.252 60.000 0.00 0.00 0.00 4.46
4698 5235 4.305011 CGACTCTCTCTGGGTCGT 57.695 61.111 9.58 0.00 44.93 4.34
4699 5236 1.797441 CGACTCTCTCTGGGTCGTG 59.203 63.158 9.58 0.00 44.93 4.35
4700 5237 1.649390 CGACTCTCTCTGGGTCGTGG 61.649 65.000 9.58 0.00 44.93 4.94
4701 5238 1.939769 GACTCTCTCTGGGTCGTGGC 61.940 65.000 0.00 0.00 0.00 5.01
4702 5239 1.979155 CTCTCTCTGGGTCGTGGCA 60.979 63.158 0.00 0.00 0.00 4.92
4703 5240 1.533033 TCTCTCTGGGTCGTGGCAA 60.533 57.895 0.00 0.00 0.00 4.52
4704 5241 1.374758 CTCTCTGGGTCGTGGCAAC 60.375 63.158 0.00 0.00 0.00 4.17
4705 5242 2.358737 CTCTGGGTCGTGGCAACC 60.359 66.667 0.00 0.00 35.97 3.77
4706 5243 4.308458 TCTGGGTCGTGGCAACCG 62.308 66.667 2.40 0.00 37.69 4.44
4763 5300 2.124403 CTGTGGCCCAGCTGATCC 60.124 66.667 17.39 15.83 33.59 3.36
4773 5310 0.325933 CAGCTGATCCAAGTCCACCA 59.674 55.000 8.42 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.469119 GGTGATAAAATCGCATCGAAAGAACG 61.469 42.308 0.00 0.00 39.99 3.95
6 7 5.677178 GGTGATAAAATCGCATCGAAAGAAC 59.323 40.000 0.00 0.00 39.99 3.01
7 8 5.584649 AGGTGATAAAATCGCATCGAAAGAA 59.415 36.000 0.00 0.00 39.99 2.52
8 9 5.116180 AGGTGATAAAATCGCATCGAAAGA 58.884 37.500 0.00 0.00 39.99 2.52
9 10 5.409643 AGGTGATAAAATCGCATCGAAAG 57.590 39.130 0.00 0.00 39.99 2.62
10 11 5.403897 GAGGTGATAAAATCGCATCGAAA 57.596 39.130 0.00 0.00 40.16 3.46
15 16 8.849168 TGAAATATTGAGGTGATAAAATCGCAT 58.151 29.630 3.16 0.00 41.46 4.73
16 17 8.219546 TGAAATATTGAGGTGATAAAATCGCA 57.780 30.769 3.16 0.00 41.46 5.10
17 18 9.683069 ATTGAAATATTGAGGTGATAAAATCGC 57.317 29.630 0.00 0.00 39.02 4.58
37 38 9.165035 GATAAAGGGCATTTCATTGAATTGAAA 57.835 29.630 20.12 2.46 46.46 2.69
38 39 7.492020 CGATAAAGGGCATTTCATTGAATTGAA 59.508 33.333 20.12 0.00 33.89 2.69
39 40 6.979817 CGATAAAGGGCATTTCATTGAATTGA 59.020 34.615 20.12 0.00 32.01 2.57
40 41 6.979817 TCGATAAAGGGCATTTCATTGAATTG 59.020 34.615 14.18 14.18 32.01 2.32
41 42 7.111247 TCGATAAAGGGCATTTCATTGAATT 57.889 32.000 0.00 0.00 32.01 2.17
42 43 6.713762 TCGATAAAGGGCATTTCATTGAAT 57.286 33.333 0.00 0.00 32.01 2.57
43 44 6.522625 TTCGATAAAGGGCATTTCATTGAA 57.477 33.333 0.00 6.55 32.01 2.69
44 45 6.522625 TTTCGATAAAGGGCATTTCATTGA 57.477 33.333 0.00 0.84 32.01 2.57
45 46 7.593875 TTTTTCGATAAAGGGCATTTCATTG 57.406 32.000 0.00 0.00 32.01 2.82
80 81 7.591057 GTCGTTGATGAAGAAAAATGTTGATCA 59.409 33.333 0.00 0.00 0.00 2.92
88 89 5.432885 AACCGTCGTTGATGAAGAAAAAT 57.567 34.783 0.00 0.00 0.00 1.82
130 131 1.899142 GTCATGCTAAGGCCCCAAAAA 59.101 47.619 0.00 0.00 37.74 1.94
158 159 6.073927 GCAAACCTTGTTGTACTAGACACTAC 60.074 42.308 0.00 2.01 37.96 2.73
161 162 4.024302 GGCAAACCTTGTTGTACTAGACAC 60.024 45.833 0.00 0.00 37.96 3.67
168 169 0.312729 CGGGGCAAACCTTGTTGTAC 59.687 55.000 0.00 0.00 40.03 2.90
202 203 3.595758 GCGCCGCCATTATTGCCT 61.596 61.111 0.00 0.00 0.00 4.75
209 210 4.752142 CGAAAACGCGCCGCCATT 62.752 61.111 5.73 0.00 0.00 3.16
228 229 2.159558 CGACTACAAGCACTAGAGCGAA 60.160 50.000 6.51 0.00 40.15 4.70
235 236 1.162698 AGCGACGACTACAAGCACTA 58.837 50.000 0.00 0.00 0.00 2.74
293 294 4.261155 CGTTCGGGAGTTATCATTACCGTA 60.261 45.833 0.00 0.00 41.82 4.02
294 295 3.489738 CGTTCGGGAGTTATCATTACCGT 60.490 47.826 0.00 0.00 41.82 4.83
295 296 3.047796 CGTTCGGGAGTTATCATTACCG 58.952 50.000 0.00 0.00 42.45 4.02
296 297 4.050852 ACGTTCGGGAGTTATCATTACC 57.949 45.455 0.00 0.00 0.00 2.85
297 298 5.104374 TGAACGTTCGGGAGTTATCATTAC 58.896 41.667 22.48 0.00 0.00 1.89
298 299 5.327616 TGAACGTTCGGGAGTTATCATTA 57.672 39.130 22.48 0.00 0.00 1.90
299 300 4.181578 CTGAACGTTCGGGAGTTATCATT 58.818 43.478 26.35 0.00 0.00 2.57
300 301 3.782046 CTGAACGTTCGGGAGTTATCAT 58.218 45.455 26.35 0.00 0.00 2.45
301 302 3.226346 CTGAACGTTCGGGAGTTATCA 57.774 47.619 26.35 4.25 0.00 2.15
310 311 1.725164 GCTTAACTCCTGAACGTTCGG 59.275 52.381 26.94 26.94 0.00 4.30
311 312 2.400399 TGCTTAACTCCTGAACGTTCG 58.600 47.619 22.48 16.45 0.00 3.95
312 313 3.125316 CCATGCTTAACTCCTGAACGTTC 59.875 47.826 21.42 21.42 0.00 3.95
313 314 3.074412 CCATGCTTAACTCCTGAACGTT 58.926 45.455 0.00 0.00 0.00 3.99
314 315 2.699954 CCATGCTTAACTCCTGAACGT 58.300 47.619 0.00 0.00 0.00 3.99
315 316 1.398390 GCCATGCTTAACTCCTGAACG 59.602 52.381 0.00 0.00 0.00 3.95
316 317 2.436417 TGCCATGCTTAACTCCTGAAC 58.564 47.619 0.00 0.00 0.00 3.18
317 318 2.819608 GTTGCCATGCTTAACTCCTGAA 59.180 45.455 0.00 0.00 0.00 3.02
318 319 2.436417 GTTGCCATGCTTAACTCCTGA 58.564 47.619 0.00 0.00 0.00 3.86
319 320 1.474077 GGTTGCCATGCTTAACTCCTG 59.526 52.381 0.00 0.00 0.00 3.86
320 321 1.616994 GGGTTGCCATGCTTAACTCCT 60.617 52.381 0.00 0.00 0.00 3.69
321 322 0.817654 GGGTTGCCATGCTTAACTCC 59.182 55.000 0.00 0.00 0.00 3.85
322 323 0.451783 CGGGTTGCCATGCTTAACTC 59.548 55.000 0.00 0.00 0.00 3.01
323 324 0.037590 TCGGGTTGCCATGCTTAACT 59.962 50.000 0.00 0.00 0.00 2.24
324 325 0.885196 TTCGGGTTGCCATGCTTAAC 59.115 50.000 0.00 0.00 0.00 2.01
325 326 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
326 327 1.302383 CGTTCGGGTTGCCATGCTTA 61.302 55.000 0.00 0.00 0.00 3.09
327 328 2.625823 CGTTCGGGTTGCCATGCTT 61.626 57.895 0.00 0.00 0.00 3.91
328 329 3.055719 CGTTCGGGTTGCCATGCT 61.056 61.111 0.00 0.00 0.00 3.79
329 330 4.114997 CCGTTCGGGTTGCCATGC 62.115 66.667 3.04 0.00 0.00 4.06
330 331 3.439540 CCCGTTCGGGTTGCCATG 61.440 66.667 20.65 0.00 40.49 3.66
339 340 0.391927 TGCCATCTAAACCCGTTCGG 60.392 55.000 4.08 4.08 37.81 4.30
340 341 1.396996 CTTGCCATCTAAACCCGTTCG 59.603 52.381 0.00 0.00 0.00 3.95
341 342 2.433436 ACTTGCCATCTAAACCCGTTC 58.567 47.619 0.00 0.00 0.00 3.95
342 343 2.579410 ACTTGCCATCTAAACCCGTT 57.421 45.000 0.00 0.00 0.00 4.44
343 344 2.579410 AACTTGCCATCTAAACCCGT 57.421 45.000 0.00 0.00 0.00 5.28
344 345 4.007659 ACTAAACTTGCCATCTAAACCCG 58.992 43.478 0.00 0.00 0.00 5.28
345 346 5.977489 AACTAAACTTGCCATCTAAACCC 57.023 39.130 0.00 0.00 0.00 4.11
346 347 5.633601 GCAAACTAAACTTGCCATCTAAACC 59.366 40.000 0.00 0.00 42.74 3.27
347 348 5.342259 CGCAAACTAAACTTGCCATCTAAAC 59.658 40.000 2.21 0.00 45.15 2.01
348 349 5.009210 ACGCAAACTAAACTTGCCATCTAAA 59.991 36.000 2.21 0.00 45.15 1.85
349 350 4.517453 ACGCAAACTAAACTTGCCATCTAA 59.483 37.500 2.21 0.00 45.15 2.10
350 351 4.069304 ACGCAAACTAAACTTGCCATCTA 58.931 39.130 2.21 0.00 45.15 1.98
351 352 2.884639 ACGCAAACTAAACTTGCCATCT 59.115 40.909 2.21 0.00 45.15 2.90
352 353 2.979813 CACGCAAACTAAACTTGCCATC 59.020 45.455 2.21 0.00 45.15 3.51
353 354 2.621055 TCACGCAAACTAAACTTGCCAT 59.379 40.909 2.21 0.00 45.15 4.40
354 355 2.017782 TCACGCAAACTAAACTTGCCA 58.982 42.857 2.21 0.00 45.15 4.92
355 356 2.289547 TCTCACGCAAACTAAACTTGCC 59.710 45.455 2.21 0.00 45.15 4.52
356 357 3.602390 TCTCACGCAAACTAAACTTGC 57.398 42.857 0.00 0.00 44.62 4.01
357 358 6.307155 CCTAATCTCACGCAAACTAAACTTG 58.693 40.000 0.00 0.00 0.00 3.16
358 359 5.411669 CCCTAATCTCACGCAAACTAAACTT 59.588 40.000 0.00 0.00 0.00 2.66
359 360 4.935808 CCCTAATCTCACGCAAACTAAACT 59.064 41.667 0.00 0.00 0.00 2.66
360 361 4.933400 TCCCTAATCTCACGCAAACTAAAC 59.067 41.667 0.00 0.00 0.00 2.01
361 362 5.155278 TCCCTAATCTCACGCAAACTAAA 57.845 39.130 0.00 0.00 0.00 1.85
362 363 4.811969 TCCCTAATCTCACGCAAACTAA 57.188 40.909 0.00 0.00 0.00 2.24
363 364 4.811969 TTCCCTAATCTCACGCAAACTA 57.188 40.909 0.00 0.00 0.00 2.24
364 365 3.695830 TTCCCTAATCTCACGCAAACT 57.304 42.857 0.00 0.00 0.00 2.66
365 366 3.500680 TGTTTCCCTAATCTCACGCAAAC 59.499 43.478 0.00 0.00 0.00 2.93
366 367 3.745799 TGTTTCCCTAATCTCACGCAAA 58.254 40.909 0.00 0.00 0.00 3.68
367 368 3.410631 TGTTTCCCTAATCTCACGCAA 57.589 42.857 0.00 0.00 0.00 4.85
368 369 3.270027 CATGTTTCCCTAATCTCACGCA 58.730 45.455 0.00 0.00 0.00 5.24
369 370 2.614057 CCATGTTTCCCTAATCTCACGC 59.386 50.000 0.00 0.00 0.00 5.34
370 371 2.614057 GCCATGTTTCCCTAATCTCACG 59.386 50.000 0.00 0.00 0.00 4.35
371 372 3.620488 TGCCATGTTTCCCTAATCTCAC 58.380 45.455 0.00 0.00 0.00 3.51
372 373 4.314522 TTGCCATGTTTCCCTAATCTCA 57.685 40.909 0.00 0.00 0.00 3.27
373 374 5.859205 AATTGCCATGTTTCCCTAATCTC 57.141 39.130 0.00 0.00 0.00 2.75
374 375 6.441604 AGAAAATTGCCATGTTTCCCTAATCT 59.558 34.615 2.96 0.00 32.74 2.40
375 376 6.536224 CAGAAAATTGCCATGTTTCCCTAATC 59.464 38.462 2.96 0.00 32.74 1.75
376 377 6.213195 TCAGAAAATTGCCATGTTTCCCTAAT 59.787 34.615 2.96 0.00 32.74 1.73
377 378 5.541868 TCAGAAAATTGCCATGTTTCCCTAA 59.458 36.000 2.96 0.00 32.74 2.69
378 379 5.047377 GTCAGAAAATTGCCATGTTTCCCTA 60.047 40.000 2.96 0.00 32.74 3.53
379 380 3.903090 TCAGAAAATTGCCATGTTTCCCT 59.097 39.130 2.96 0.00 32.74 4.20
380 381 3.996363 GTCAGAAAATTGCCATGTTTCCC 59.004 43.478 2.96 0.00 32.74 3.97
381 382 4.630111 TGTCAGAAAATTGCCATGTTTCC 58.370 39.130 2.96 0.00 32.74 3.13
382 383 6.601741 TTTGTCAGAAAATTGCCATGTTTC 57.398 33.333 0.00 0.00 0.00 2.78
383 384 6.998968 TTTTGTCAGAAAATTGCCATGTTT 57.001 29.167 0.00 0.00 0.00 2.83
384 385 6.998968 TTTTTGTCAGAAAATTGCCATGTT 57.001 29.167 0.00 0.00 0.00 2.71
405 406 5.388994 CGCAACTTTGTCCTTTTTCGTTTTT 60.389 36.000 0.00 0.00 0.00 1.94
406 407 4.090786 CGCAACTTTGTCCTTTTTCGTTTT 59.909 37.500 0.00 0.00 0.00 2.43
407 408 3.610677 CGCAACTTTGTCCTTTTTCGTTT 59.389 39.130 0.00 0.00 0.00 3.60
408 409 3.119779 TCGCAACTTTGTCCTTTTTCGTT 60.120 39.130 0.00 0.00 0.00 3.85
409 410 2.420722 TCGCAACTTTGTCCTTTTTCGT 59.579 40.909 0.00 0.00 0.00 3.85
410 411 3.059634 TCGCAACTTTGTCCTTTTTCG 57.940 42.857 0.00 0.00 0.00 3.46
411 412 3.981416 GGATCGCAACTTTGTCCTTTTTC 59.019 43.478 0.00 0.00 0.00 2.29
412 413 3.243737 GGGATCGCAACTTTGTCCTTTTT 60.244 43.478 4.64 0.00 0.00 1.94
413 414 2.296190 GGGATCGCAACTTTGTCCTTTT 59.704 45.455 4.64 0.00 0.00 2.27
414 415 1.886542 GGGATCGCAACTTTGTCCTTT 59.113 47.619 4.64 0.00 0.00 3.11
415 416 1.073923 AGGGATCGCAACTTTGTCCTT 59.926 47.619 12.83 0.00 0.00 3.36
416 417 0.693049 AGGGATCGCAACTTTGTCCT 59.307 50.000 12.83 0.00 0.00 3.85
417 418 2.396590 TAGGGATCGCAACTTTGTCC 57.603 50.000 12.83 0.00 0.00 4.02
418 419 3.531538 TCATAGGGATCGCAACTTTGTC 58.468 45.455 12.83 0.00 0.00 3.18
419 420 3.627395 TCATAGGGATCGCAACTTTGT 57.373 42.857 12.83 0.00 0.00 2.83
420 421 3.941483 AGTTCATAGGGATCGCAACTTTG 59.059 43.478 12.83 2.40 0.00 2.77
421 422 4.222124 AGTTCATAGGGATCGCAACTTT 57.778 40.909 12.83 0.00 0.00 2.66
422 423 3.914426 AGTTCATAGGGATCGCAACTT 57.086 42.857 12.83 0.00 0.00 2.66
423 424 5.104900 ACTTTAGTTCATAGGGATCGCAACT 60.105 40.000 12.83 14.01 0.00 3.16
424 425 5.116882 ACTTTAGTTCATAGGGATCGCAAC 58.883 41.667 12.83 7.49 0.00 4.17
425 426 5.353394 ACTTTAGTTCATAGGGATCGCAA 57.647 39.130 12.83 0.00 0.00 4.85
426 427 5.353394 AACTTTAGTTCATAGGGATCGCA 57.647 39.130 12.83 0.00 31.64 5.10
427 428 5.236695 GGAAACTTTAGTTCATAGGGATCGC 59.763 44.000 0.54 0.54 37.25 4.58
428 429 6.346096 TGGAAACTTTAGTTCATAGGGATCG 58.654 40.000 0.00 0.00 37.25 3.69
429 430 7.255277 GCATGGAAACTTTAGTTCATAGGGATC 60.255 40.741 0.00 0.00 37.25 3.36
430 431 6.547510 GCATGGAAACTTTAGTTCATAGGGAT 59.452 38.462 0.00 0.00 37.25 3.85
431 432 5.885912 GCATGGAAACTTTAGTTCATAGGGA 59.114 40.000 0.00 0.00 37.25 4.20
432 433 5.652014 TGCATGGAAACTTTAGTTCATAGGG 59.348 40.000 0.00 0.00 37.25 3.53
433 434 6.757897 TGCATGGAAACTTTAGTTCATAGG 57.242 37.500 0.00 0.00 37.25 2.57
434 435 9.474920 TTTTTGCATGGAAACTTTAGTTCATAG 57.525 29.630 12.36 0.00 37.25 2.23
435 436 9.255304 GTTTTTGCATGGAAACTTTAGTTCATA 57.745 29.630 12.36 0.00 37.25 2.15
436 437 7.042791 CGTTTTTGCATGGAAACTTTAGTTCAT 60.043 33.333 12.36 0.00 37.25 2.57
437 438 6.254589 CGTTTTTGCATGGAAACTTTAGTTCA 59.745 34.615 12.36 0.00 37.25 3.18
438 439 6.254804 ACGTTTTTGCATGGAAACTTTAGTTC 59.745 34.615 12.36 0.00 37.25 3.01
439 440 6.103330 ACGTTTTTGCATGGAAACTTTAGTT 58.897 32.000 12.36 0.00 40.50 2.24
440 441 5.656480 ACGTTTTTGCATGGAAACTTTAGT 58.344 33.333 12.36 5.88 34.45 2.24
441 442 6.559521 CGAACGTTTTTGCATGGAAACTTTAG 60.560 38.462 12.36 5.29 34.45 1.85
442 443 5.230306 CGAACGTTTTTGCATGGAAACTTTA 59.770 36.000 12.36 0.00 34.45 1.85
443 444 4.032331 CGAACGTTTTTGCATGGAAACTTT 59.968 37.500 12.36 2.66 34.45 2.66
444 445 3.549873 CGAACGTTTTTGCATGGAAACTT 59.450 39.130 12.36 1.79 34.45 2.66
445 446 3.112580 CGAACGTTTTTGCATGGAAACT 58.887 40.909 12.36 0.00 34.45 2.66
446 447 2.217620 CCGAACGTTTTTGCATGGAAAC 59.782 45.455 12.36 1.67 33.53 2.78
447 448 2.464865 CCGAACGTTTTTGCATGGAAA 58.535 42.857 8.47 8.47 0.00 3.13
448 449 1.269309 CCCGAACGTTTTTGCATGGAA 60.269 47.619 0.46 0.00 0.00 3.53
449 450 0.312416 CCCGAACGTTTTTGCATGGA 59.688 50.000 0.46 0.00 0.00 3.41
450 451 0.312416 TCCCGAACGTTTTTGCATGG 59.688 50.000 0.46 0.00 0.00 3.66
451 452 1.404477 GTCCCGAACGTTTTTGCATG 58.596 50.000 0.46 0.00 0.00 4.06
452 453 0.040781 CGTCCCGAACGTTTTTGCAT 60.041 50.000 0.46 0.00 46.42 3.96
453 454 1.352404 CGTCCCGAACGTTTTTGCA 59.648 52.632 0.46 0.00 46.42 4.08
454 455 4.199130 CGTCCCGAACGTTTTTGC 57.801 55.556 0.46 0.00 46.42 3.68
462 463 1.153353 TTGAGCATTTCGTCCCGAAC 58.847 50.000 0.00 0.00 45.64 3.95
463 464 1.885560 TTTGAGCATTTCGTCCCGAA 58.114 45.000 0.00 0.00 44.28 4.30
464 465 1.885560 TTTTGAGCATTTCGTCCCGA 58.114 45.000 0.00 0.00 0.00 5.14
465 466 2.477863 GGATTTTGAGCATTTCGTCCCG 60.478 50.000 0.00 0.00 0.00 5.14
466 467 2.477863 CGGATTTTGAGCATTTCGTCCC 60.478 50.000 0.00 0.00 0.00 4.46
467 468 2.418628 TCGGATTTTGAGCATTTCGTCC 59.581 45.455 0.00 0.00 0.00 4.79
468 469 3.740044 TCGGATTTTGAGCATTTCGTC 57.260 42.857 0.00 0.00 0.00 4.20
469 470 3.666902 CGTTCGGATTTTGAGCATTTCGT 60.667 43.478 0.00 0.00 0.00 3.85
470 471 2.840176 CGTTCGGATTTTGAGCATTTCG 59.160 45.455 0.00 0.00 0.00 3.46
471 472 3.821841 ACGTTCGGATTTTGAGCATTTC 58.178 40.909 0.00 0.00 0.00 2.17
472 473 3.915437 ACGTTCGGATTTTGAGCATTT 57.085 38.095 0.00 0.00 0.00 2.32
473 474 3.666902 CGAACGTTCGGATTTTGAGCATT 60.667 43.478 36.53 0.00 46.30 3.56
474 475 2.159707 CGAACGTTCGGATTTTGAGCAT 60.160 45.455 36.53 0.00 46.30 3.79
475 476 1.193650 CGAACGTTCGGATTTTGAGCA 59.806 47.619 36.53 0.00 46.30 4.26
476 477 1.865725 CGAACGTTCGGATTTTGAGC 58.134 50.000 36.53 4.05 46.30 4.26
487 488 2.963432 TCCAATAACTCCCGAACGTTC 58.037 47.619 18.47 18.47 0.00 3.95
488 489 3.622166 ATCCAATAACTCCCGAACGTT 57.378 42.857 0.00 0.00 0.00 3.99
489 490 3.528532 GAATCCAATAACTCCCGAACGT 58.471 45.455 0.00 0.00 0.00 3.99
490 491 2.870411 GGAATCCAATAACTCCCGAACG 59.130 50.000 0.00 0.00 0.00 3.95
491 492 4.152284 AGGAATCCAATAACTCCCGAAC 57.848 45.455 0.61 0.00 0.00 3.95
492 493 4.966805 AGTAGGAATCCAATAACTCCCGAA 59.033 41.667 0.61 0.00 0.00 4.30
493 494 4.553678 AGTAGGAATCCAATAACTCCCGA 58.446 43.478 0.61 0.00 0.00 5.14
494 495 4.957684 AGTAGGAATCCAATAACTCCCG 57.042 45.455 0.61 0.00 0.00 5.14
495 496 9.642343 ATTAAAAGTAGGAATCCAATAACTCCC 57.358 33.333 0.61 0.00 0.00 4.30
504 505 9.362151 ACAAAGAACATTAAAAGTAGGAATCCA 57.638 29.630 0.61 0.00 0.00 3.41
509 510 8.780249 GCAGTACAAAGAACATTAAAAGTAGGA 58.220 33.333 0.00 0.00 0.00 2.94
510 511 8.021396 GGCAGTACAAAGAACATTAAAAGTAGG 58.979 37.037 0.00 0.00 0.00 3.18
511 512 8.564574 TGGCAGTACAAAGAACATTAAAAGTAG 58.435 33.333 0.00 0.00 0.00 2.57
512 513 8.453238 TGGCAGTACAAAGAACATTAAAAGTA 57.547 30.769 0.00 0.00 0.00 2.24
513 514 7.341445 TGGCAGTACAAAGAACATTAAAAGT 57.659 32.000 0.00 0.00 0.00 2.66
514 515 8.081633 TCATGGCAGTACAAAGAACATTAAAAG 58.918 33.333 0.00 0.00 0.00 2.27
515 516 7.946207 TCATGGCAGTACAAAGAACATTAAAA 58.054 30.769 0.00 0.00 0.00 1.52
516 517 7.517614 TCATGGCAGTACAAAGAACATTAAA 57.482 32.000 0.00 0.00 0.00 1.52
517 518 7.701539 ATCATGGCAGTACAAAGAACATTAA 57.298 32.000 0.00 0.00 0.00 1.40
688 870 4.092968 CGTTGACTACATGGCCTTTTAGTC 59.907 45.833 26.70 26.70 40.54 2.59
705 887 1.104577 TTTTGGGTGAGGCCGTTGAC 61.105 55.000 0.00 0.00 38.44 3.18
862 1044 2.325661 TGAGATGGGAGTGTGGAGAA 57.674 50.000 0.00 0.00 0.00 2.87
1043 1231 4.838152 TGAGAGCGGAATGGCGCC 62.838 66.667 22.73 22.73 38.18 6.53
1273 1467 4.330074 ACGCAAACAAATCTAGAGATTCCG 59.670 41.667 5.26 3.31 43.41 4.30
1274 1468 5.122396 ACACGCAAACAAATCTAGAGATTCC 59.878 40.000 5.26 0.00 43.41 3.01
1277 1471 5.120830 GTCACACGCAAACAAATCTAGAGAT 59.879 40.000 0.00 0.00 36.07 2.75
1291 1485 2.238942 ATGAACAGAGTCACACGCAA 57.761 45.000 0.00 0.00 0.00 4.85
1294 1492 3.002656 AGCAAAATGAACAGAGTCACACG 59.997 43.478 0.00 0.00 0.00 4.49
1299 1497 5.948992 AGGTAAGCAAAATGAACAGAGTC 57.051 39.130 0.00 0.00 0.00 3.36
1300 1498 6.375455 CCATAGGTAAGCAAAATGAACAGAGT 59.625 38.462 0.00 0.00 0.00 3.24
1301 1499 6.678900 GCCATAGGTAAGCAAAATGAACAGAG 60.679 42.308 0.00 0.00 0.00 3.35
1309 1511 2.695147 GCAGGCCATAGGTAAGCAAAAT 59.305 45.455 5.01 0.00 0.00 1.82
1311 1513 1.284785 AGCAGGCCATAGGTAAGCAAA 59.715 47.619 5.01 0.00 0.00 3.68
1326 1532 1.021390 CGTGGCCTAGAAACAGCAGG 61.021 60.000 3.32 0.00 0.00 4.85
1361 1567 4.329545 GGGTTGCTGCTCCGGACA 62.330 66.667 0.00 2.99 0.00 4.02
1523 1729 4.038080 GGTGGCGGCGAAACCTTG 62.038 66.667 20.18 0.00 35.61 3.61
1553 1759 2.202676 GGCGGAGACAGCTTCGAG 60.203 66.667 0.00 0.00 46.28 4.04
1907 2116 2.046892 CCAACAGACTCGGCCAGG 60.047 66.667 2.24 0.00 0.00 4.45
2054 2263 4.529377 TCATGTCATGCTCATATGCTCCTA 59.471 41.667 8.03 0.00 0.00 2.94
2192 2401 0.387622 CTGTGAAATGGCTGCCAACG 60.388 55.000 27.24 11.30 36.95 4.10
2320 2539 5.192927 TCAGAACCATCAGTGTCAAACTTT 58.807 37.500 0.00 0.00 36.83 2.66
2523 2742 7.179927 TCACAATCATCAAATGCAAAACTTG 57.820 32.000 0.00 0.00 0.00 3.16
2631 2850 1.287730 GCGACAAGCTGACTGGACTG 61.288 60.000 0.00 0.00 44.04 3.51
2776 2998 3.528976 AGGGCTACCAGATGATGATGAT 58.471 45.455 0.00 0.00 40.13 2.45
2778 3000 3.784511 AAGGGCTACCAGATGATGATG 57.215 47.619 0.00 0.00 40.13 3.07
2819 3041 1.227674 GCCTCTGTAATGAGCCCCG 60.228 63.158 0.00 0.00 33.02 5.73
2972 3197 0.322906 CAACCAGCTTCCCCTTCCTC 60.323 60.000 0.00 0.00 0.00 3.71
2992 3217 6.538381 CACATGTTAACATACCTGTAGCATGA 59.462 38.462 20.39 0.00 39.08 3.07
3025 3250 0.804364 TCATCGGTTCAACTGCATGC 59.196 50.000 11.82 11.82 0.00 4.06
3061 3340 4.412207 CAATGGCAGCATCATCATAATCG 58.588 43.478 0.00 0.00 0.00 3.34
3064 3343 3.319689 CACCAATGGCAGCATCATCATAA 59.680 43.478 0.00 0.00 0.00 1.90
3084 3363 3.064207 TCAGTTCATAAACGCACCTCAC 58.936 45.455 0.00 0.00 40.48 3.51
3240 3661 7.491048 AGTTTAAAACTGCAACACTTATTGTGG 59.509 33.333 0.00 0.00 44.77 4.17
3241 3662 8.406172 AGTTTAAAACTGCAACACTTATTGTG 57.594 30.769 0.00 0.00 45.41 3.33
3249 3670 9.946165 ACTAATCTTAGTTTAAAACTGCAACAC 57.054 29.630 0.00 0.00 40.96 3.32
3274 3695 9.944663 TGTCACAGTTTTGAACTATAATTGAAC 57.055 29.630 0.00 0.00 40.46 3.18
3275 3696 9.944663 GTGTCACAGTTTTGAACTATAATTGAA 57.055 29.630 0.00 0.00 40.46 2.69
3276 3697 9.337396 AGTGTCACAGTTTTGAACTATAATTGA 57.663 29.630 5.62 0.00 40.46 2.57
3277 3698 9.950680 AAGTGTCACAGTTTTGAACTATAATTG 57.049 29.630 5.62 0.00 40.46 2.32
3284 3705 9.337396 TCATAATAAGTGTCACAGTTTTGAACT 57.663 29.630 2.42 0.00 44.06 3.01
3285 3706 9.944663 TTCATAATAAGTGTCACAGTTTTGAAC 57.055 29.630 2.42 0.00 0.00 3.18
3286 3707 9.944663 GTTCATAATAAGTGTCACAGTTTTGAA 57.055 29.630 2.42 10.14 0.00 2.69
3287 3708 8.279800 CGTTCATAATAAGTGTCACAGTTTTGA 58.720 33.333 2.42 5.21 0.00 2.69
3288 3709 7.533900 CCGTTCATAATAAGTGTCACAGTTTTG 59.466 37.037 2.42 3.13 0.00 2.44
3289 3710 7.442969 TCCGTTCATAATAAGTGTCACAGTTTT 59.557 33.333 2.42 1.20 0.00 2.43
3290 3711 6.932400 TCCGTTCATAATAAGTGTCACAGTTT 59.068 34.615 2.42 0.00 0.00 2.66
3291 3712 6.460781 TCCGTTCATAATAAGTGTCACAGTT 58.539 36.000 5.62 2.74 0.00 3.16
3292 3713 6.032956 TCCGTTCATAATAAGTGTCACAGT 57.967 37.500 5.62 0.00 0.00 3.55
3293 3714 6.036083 CCTTCCGTTCATAATAAGTGTCACAG 59.964 42.308 5.62 0.00 0.00 3.66
3294 3715 5.872617 CCTTCCGTTCATAATAAGTGTCACA 59.127 40.000 5.62 0.00 0.00 3.58
3295 3716 5.293569 CCCTTCCGTTCATAATAAGTGTCAC 59.706 44.000 0.00 0.00 0.00 3.67
3296 3717 5.188163 TCCCTTCCGTTCATAATAAGTGTCA 59.812 40.000 0.00 0.00 0.00 3.58
3297 3718 5.667466 TCCCTTCCGTTCATAATAAGTGTC 58.333 41.667 0.00 0.00 0.00 3.67
3298 3719 5.189145 ACTCCCTTCCGTTCATAATAAGTGT 59.811 40.000 0.00 0.00 0.00 3.55
3299 3720 5.671493 ACTCCCTTCCGTTCATAATAAGTG 58.329 41.667 0.00 0.00 0.00 3.16
3300 3721 5.952347 ACTCCCTTCCGTTCATAATAAGT 57.048 39.130 0.00 0.00 0.00 2.24
3301 3722 7.052142 ACTACTCCCTTCCGTTCATAATAAG 57.948 40.000 0.00 0.00 0.00 1.73
3302 3723 8.716674 ATACTACTCCCTTCCGTTCATAATAA 57.283 34.615 0.00 0.00 0.00 1.40
3303 3724 9.986157 ATATACTACTCCCTTCCGTTCATAATA 57.014 33.333 0.00 0.00 0.00 0.98
3304 3725 8.896722 ATATACTACTCCCTTCCGTTCATAAT 57.103 34.615 0.00 0.00 0.00 1.28
3305 3726 9.458727 CTATATACTACTCCCTTCCGTTCATAA 57.541 37.037 0.00 0.00 0.00 1.90
3306 3727 8.829746 TCTATATACTACTCCCTTCCGTTCATA 58.170 37.037 0.00 0.00 0.00 2.15
3307 3728 7.611079 GTCTATATACTACTCCCTTCCGTTCAT 59.389 40.741 0.00 0.00 0.00 2.57
3308 3729 6.939163 GTCTATATACTACTCCCTTCCGTTCA 59.061 42.308 0.00 0.00 0.00 3.18
3309 3730 7.167535 AGTCTATATACTACTCCCTTCCGTTC 58.832 42.308 0.00 0.00 0.00 3.95
3310 3731 7.017452 AGAGTCTATATACTACTCCCTTCCGTT 59.983 40.741 13.39 0.00 40.42 4.44
3311 3732 6.501453 AGAGTCTATATACTACTCCCTTCCGT 59.499 42.308 13.39 0.00 40.42 4.69
3312 3733 6.949715 AGAGTCTATATACTACTCCCTTCCG 58.050 44.000 13.39 0.00 40.42 4.30
3313 3734 8.384718 TCAAGAGTCTATATACTACTCCCTTCC 58.615 40.741 13.39 0.00 40.42 3.46
3314 3735 9.444600 CTCAAGAGTCTATATACTACTCCCTTC 57.555 40.741 13.39 0.00 40.42 3.46
3315 3736 8.951541 ACTCAAGAGTCTATATACTACTCCCTT 58.048 37.037 13.39 4.25 40.42 3.95
3316 3737 8.380099 CACTCAAGAGTCTATATACTACTCCCT 58.620 40.741 13.39 3.46 40.42 4.20
3317 3738 7.120138 GCACTCAAGAGTCTATATACTACTCCC 59.880 44.444 13.39 0.00 40.42 4.30
3318 3739 7.881232 AGCACTCAAGAGTCTATATACTACTCC 59.119 40.741 13.39 2.12 40.42 3.85
3319 3740 8.717821 CAGCACTCAAGAGTCTATATACTACTC 58.282 40.741 0.00 10.59 40.20 2.59
3320 3741 7.174253 GCAGCACTCAAGAGTCTATATACTACT 59.826 40.741 0.00 0.00 40.20 2.57
3321 3742 7.302524 GCAGCACTCAAGAGTCTATATACTAC 58.697 42.308 0.00 0.00 40.20 2.73
3322 3743 6.431543 GGCAGCACTCAAGAGTCTATATACTA 59.568 42.308 0.00 0.00 40.20 1.82
3323 3744 5.242838 GGCAGCACTCAAGAGTCTATATACT 59.757 44.000 0.00 0.00 40.20 2.12
3324 3745 5.010112 TGGCAGCACTCAAGAGTCTATATAC 59.990 44.000 0.00 0.00 40.20 1.47
3325 3746 5.140454 TGGCAGCACTCAAGAGTCTATATA 58.860 41.667 0.00 0.00 40.20 0.86
3326 3747 3.963374 TGGCAGCACTCAAGAGTCTATAT 59.037 43.478 0.00 0.00 40.20 0.86
3327 3748 3.365472 TGGCAGCACTCAAGAGTCTATA 58.635 45.455 0.00 0.00 40.20 1.31
3328 3749 2.168106 CTGGCAGCACTCAAGAGTCTAT 59.832 50.000 0.00 0.00 40.20 1.98
3329 3750 1.547820 CTGGCAGCACTCAAGAGTCTA 59.452 52.381 0.00 0.00 40.20 2.59
3330 3751 0.321021 CTGGCAGCACTCAAGAGTCT 59.679 55.000 0.00 0.00 40.20 3.24
3409 3830 3.525537 ACTGGTATGCTCAACGAATCAG 58.474 45.455 0.00 0.00 0.00 2.90
3760 4239 6.292919 GGTGAAACTGAAACATAGACTGTCAC 60.293 42.308 10.88 0.00 34.82 3.67
4188 4703 5.831702 AATGAGAAGAAGGCAAAGCATAG 57.168 39.130 0.00 0.00 0.00 2.23
4189 4704 6.886459 ACTAAATGAGAAGAAGGCAAAGCATA 59.114 34.615 0.00 0.00 0.00 3.14
4190 4705 5.713861 ACTAAATGAGAAGAAGGCAAAGCAT 59.286 36.000 0.00 0.00 0.00 3.79
4273 4788 8.658499 TGACTAAAAAGTAGGTCAAGAAGTTC 57.342 34.615 0.00 0.00 36.04 3.01
4334 4849 8.801299 TGCTAAATACATTCATTTGAGGAACAA 58.199 29.630 0.00 0.00 36.65 2.83
4335 4850 8.347004 TGCTAAATACATTCATTTGAGGAACA 57.653 30.769 0.00 0.00 30.84 3.18
4336 4851 9.807649 AATGCTAAATACATTCATTTGAGGAAC 57.192 29.630 0.00 0.00 32.28 3.62
4349 4864 9.754382 CCAATTTCTGCTTAATGCTAAATACAT 57.246 29.630 0.00 0.00 43.37 2.29
4350 4865 8.748412 ACCAATTTCTGCTTAATGCTAAATACA 58.252 29.630 0.00 0.00 43.37 2.29
4353 4868 7.922811 GCTACCAATTTCTGCTTAATGCTAAAT 59.077 33.333 0.00 0.00 43.37 1.40
4354 4869 7.122650 AGCTACCAATTTCTGCTTAATGCTAAA 59.877 33.333 0.00 0.00 43.37 1.85
4355 4870 6.603201 AGCTACCAATTTCTGCTTAATGCTAA 59.397 34.615 0.00 0.00 43.37 3.09
4356 4871 6.122277 AGCTACCAATTTCTGCTTAATGCTA 58.878 36.000 0.00 0.00 43.37 3.49
4357 4872 4.952335 AGCTACCAATTTCTGCTTAATGCT 59.048 37.500 0.00 0.00 43.37 3.79
4358 4873 5.254339 AGCTACCAATTTCTGCTTAATGC 57.746 39.130 0.00 0.00 43.25 3.56
4359 4874 7.559590 AGTAGCTACCAATTTCTGCTTAATG 57.440 36.000 20.31 0.00 35.47 1.90
4360 4875 8.487028 ACTAGTAGCTACCAATTTCTGCTTAAT 58.513 33.333 20.31 0.00 35.47 1.40
4361 4876 7.848128 ACTAGTAGCTACCAATTTCTGCTTAA 58.152 34.615 20.31 0.00 35.47 1.85
4362 4877 7.419711 ACTAGTAGCTACCAATTTCTGCTTA 57.580 36.000 20.31 1.00 35.47 3.09
4363 4878 6.301169 ACTAGTAGCTACCAATTTCTGCTT 57.699 37.500 20.31 0.00 35.47 3.91
4364 4879 5.941555 ACTAGTAGCTACCAATTTCTGCT 57.058 39.130 20.31 0.29 37.72 4.24
4365 4880 6.986904 AAACTAGTAGCTACCAATTTCTGC 57.013 37.500 20.31 0.00 0.00 4.26
4366 4881 8.547967 TCAAAACTAGTAGCTACCAATTTCTG 57.452 34.615 20.31 15.58 0.00 3.02
4370 4885 9.601217 CAGTATCAAAACTAGTAGCTACCAATT 57.399 33.333 20.31 9.04 0.00 2.32
4371 4886 8.204836 CCAGTATCAAAACTAGTAGCTACCAAT 58.795 37.037 20.31 4.80 0.00 3.16
4372 4887 7.179694 ACCAGTATCAAAACTAGTAGCTACCAA 59.820 37.037 20.31 8.23 0.00 3.67
4373 4888 6.666546 ACCAGTATCAAAACTAGTAGCTACCA 59.333 38.462 20.31 6.00 0.00 3.25
4374 4889 7.110043 ACCAGTATCAAAACTAGTAGCTACC 57.890 40.000 20.31 2.81 0.00 3.18
4414 4951 6.839820 ACATAGCGGTTAACTAGCATAAAC 57.160 37.500 21.92 0.00 0.00 2.01
4628 5165 1.685765 TGGCGAGGACCATGTAGCT 60.686 57.895 0.00 0.00 33.75 3.32
4680 5217 2.795297 CGACCCAGAGAGAGTCGC 59.205 66.667 0.00 0.00 45.72 5.19
4714 5251 3.941657 GAGCCAGGCTGACCGACAC 62.942 68.421 22.26 0.00 39.88 3.67
4715 5252 3.695606 GAGCCAGGCTGACCGACA 61.696 66.667 22.26 0.00 39.88 4.35
4716 5253 4.459089 GGAGCCAGGCTGACCGAC 62.459 72.222 22.26 2.17 39.88 4.79
4719 5256 4.767255 CACGGAGCCAGGCTGACC 62.767 72.222 22.26 14.45 39.88 4.02
4747 5284 2.488771 CTTGGATCAGCTGGGCCACA 62.489 60.000 22.71 14.87 0.00 4.17
4763 5300 1.014044 CGGTGTCGATGGTGGACTTG 61.014 60.000 0.00 0.00 39.00 3.16
4773 5310 2.492090 GCAGCTCTCGGTGTCGAT 59.508 61.111 0.00 0.00 45.04 3.59
4792 5329 1.848652 TTCTTCTAGGGTCTGACCGG 58.151 55.000 19.98 12.59 39.83 5.28
4793 5330 2.033550 CGATTCTTCTAGGGTCTGACCG 59.966 54.545 19.98 7.28 39.83 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.