Multiple sequence alignment - TraesCS4D01G195700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G195700 chr4D 100.000 5458 0 0 1 5458 339538439 339543896 0.000000e+00 10080.0
1 TraesCS4D01G195700 chr4D 97.368 38 1 0 3252 3289 15922997 15923034 1.270000e-06 65.8
2 TraesCS4D01G195700 chr4B 95.307 2472 80 13 405 2852 419822328 419824787 0.000000e+00 3890.0
3 TraesCS4D01G195700 chr4B 93.006 1444 73 16 3416 4851 419825255 419826678 0.000000e+00 2082.0
4 TraesCS4D01G195700 chr4B 90.688 494 29 12 2880 3367 419824772 419825254 4.610000e-180 641.0
5 TraesCS4D01G195700 chr4B 87.031 293 23 8 5165 5451 419826712 419826995 3.170000e-82 316.0
6 TraesCS4D01G195700 chr4B 89.326 178 11 3 219 389 419821820 419821996 3.310000e-52 217.0
7 TraesCS4D01G195700 chr4B 95.789 95 3 1 1 94 419819250 419819344 9.470000e-33 152.0
8 TraesCS4D01G195700 chr4B 96.429 56 2 0 113 168 419819327 419819382 5.820000e-15 93.5
9 TraesCS4D01G195700 chr4A 96.464 1923 40 13 180 2084 130506993 130505081 0.000000e+00 3149.0
10 TraesCS4D01G195700 chr4A 95.699 1023 42 1 3923 4943 130502640 130501618 0.000000e+00 1644.0
11 TraesCS4D01G195700 chr4A 84.983 1465 127 32 2070 3491 130505062 130503648 0.000000e+00 1400.0
12 TraesCS4D01G195700 chr4A 86.957 368 23 13 3496 3854 130502987 130502636 1.840000e-104 390.0
13 TraesCS4D01G195700 chr4A 93.684 95 5 1 1 94 130507166 130507072 2.050000e-29 141.0
14 TraesCS4D01G195700 chr4A 92.405 79 6 0 114 192 130507088 130507010 4.470000e-21 113.0
15 TraesCS4D01G195700 chr1B 79.023 348 60 12 1616 1955 85432670 85433012 5.500000e-55 226.0
16 TraesCS4D01G195700 chr1D 78.736 348 61 11 1616 1955 53231524 53231866 2.560000e-53 220.0
17 TraesCS4D01G195700 chr1D 81.197 234 32 10 1234 1461 53231138 53231365 1.560000e-40 178.0
18 TraesCS4D01G195700 chr1D 84.848 66 9 1 3221 3285 348987134 348987069 1.270000e-06 65.8
19 TraesCS4D01G195700 chr1A 77.874 348 64 12 1616 1955 53023015 53023357 2.580000e-48 204.0
20 TraesCS4D01G195700 chr1A 79.915 234 35 10 1234 1461 53022633 53022860 1.570000e-35 161.0
21 TraesCS4D01G195700 chr1A 94.118 34 2 0 4105 4138 61093073 61093106 1.000000e-02 52.8
22 TraesCS4D01G195700 chr5A 92.308 65 3 1 3257 3321 69813163 69813101 2.090000e-14 91.6
23 TraesCS4D01G195700 chr5B 82.716 81 11 2 3217 3296 670249882 670249804 9.810000e-08 69.4
24 TraesCS4D01G195700 chr5D 93.333 45 3 0 3252 3296 531227725 531227681 3.530000e-07 67.6
25 TraesCS4D01G195700 chr7B 91.667 48 2 1 3224 3271 156617669 156617714 1.270000e-06 65.8
26 TraesCS4D01G195700 chr2A 87.037 54 3 3 3241 3294 33169371 33169322 2.120000e-04 58.4
27 TraesCS4D01G195700 chr2D 96.875 32 1 0 3258 3289 43997808 43997777 3.000000e-03 54.7
28 TraesCS4D01G195700 chr2D 100.000 29 0 0 4106 4134 125724917 125724889 3.000000e-03 54.7
29 TraesCS4D01G195700 chr3B 100.000 28 0 0 4111 4138 51979780 51979753 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G195700 chr4D 339538439 339543896 5457 False 10080.000000 10080 100.000000 1 5458 1 chr4D.!!$F2 5457
1 TraesCS4D01G195700 chr4B 419819250 419826995 7745 False 1055.928571 3890 92.510857 1 5451 7 chr4B.!!$F1 5450
2 TraesCS4D01G195700 chr4A 130501618 130507166 5548 True 1139.500000 3149 91.698667 1 4943 6 chr4A.!!$R1 4942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 3741 0.179043 TGTTGGAGCGCCTTAACACA 60.179 50.000 8.34 4.19 34.31 3.72 F
2235 5042 2.679450 GTGCAATCGTGGTGTACTACA 58.321 47.619 0.00 0.00 0.00 2.74 F
2662 5503 1.028905 TGTGTTCCTTCCCGCAAAAG 58.971 50.000 0.00 0.00 0.00 2.27 F
3377 6240 1.000163 CCTTGTAGTCGACTGCAGTGT 60.000 52.381 30.53 8.47 39.64 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 5095 0.036671 CCCCACTACCGGTTCTGTTC 60.037 60.0 15.04 0.00 0.00 3.18 R
3356 6207 0.038159 ACTGCAGTCGACTACAAGGC 60.038 55.0 19.57 17.31 0.00 4.35 R
3502 7023 0.730494 GCGCATGCTCACAAAGGTTC 60.730 55.0 17.13 0.00 38.39 3.62 R
5089 8620 0.030501 AGGGATGGGGTGAACCGATA 60.031 55.0 0.00 0.00 37.86 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.827507 GGTGGGCATGTGAACAACCT 60.828 55.000 0.00 0.00 0.00 3.50
85 86 0.314935 GTGGGCATGTGAACAACCTG 59.685 55.000 0.00 0.00 0.00 4.00
86 87 0.184692 TGGGCATGTGAACAACCTGA 59.815 50.000 0.00 0.00 0.00 3.86
87 88 0.883833 GGGCATGTGAACAACCTGAG 59.116 55.000 0.00 0.00 0.00 3.35
88 89 1.609208 GGCATGTGAACAACCTGAGT 58.391 50.000 0.00 0.00 0.00 3.41
89 90 1.267806 GGCATGTGAACAACCTGAGTG 59.732 52.381 0.00 0.00 0.00 3.51
90 91 1.335324 GCATGTGAACAACCTGAGTGC 60.335 52.381 0.00 0.00 0.00 4.40
91 92 1.948834 CATGTGAACAACCTGAGTGCA 59.051 47.619 0.00 0.00 0.00 4.57
92 93 2.346766 TGTGAACAACCTGAGTGCAT 57.653 45.000 0.00 0.00 0.00 3.96
93 94 2.653726 TGTGAACAACCTGAGTGCATT 58.346 42.857 0.00 0.00 0.00 3.56
94 95 2.618241 TGTGAACAACCTGAGTGCATTC 59.382 45.455 1.56 1.56 0.00 2.67
95 96 1.872952 TGAACAACCTGAGTGCATTCG 59.127 47.619 4.63 0.00 0.00 3.34
96 97 0.593128 AACAACCTGAGTGCATTCGC 59.407 50.000 4.63 0.00 39.24 4.70
169 170 3.460103 CAGTTTTGAAAACTGCCATGCT 58.540 40.909 30.49 3.80 40.80 3.79
178 179 4.510167 AAACTGCCATGCTAGTTCCTAT 57.490 40.909 11.66 0.00 36.19 2.57
265 2706 1.325476 GGGCCAGAAATTGCTCCCTG 61.325 60.000 4.39 0.00 36.01 4.45
275 2716 4.083862 GCTCCCTGGGGACGTCAC 62.084 72.222 18.91 14.85 39.76 3.67
373 2814 0.912486 ATCGGTTGGCTTCCTAGCTT 59.088 50.000 0.00 0.00 46.90 3.74
374 2815 1.563924 TCGGTTGGCTTCCTAGCTTA 58.436 50.000 0.00 0.00 46.90 3.09
375 2816 1.206371 TCGGTTGGCTTCCTAGCTTAC 59.794 52.381 0.00 0.00 46.90 2.34
376 2817 1.742750 CGGTTGGCTTCCTAGCTTACC 60.743 57.143 0.00 0.00 46.90 2.85
377 2818 1.653151 GTTGGCTTCCTAGCTTACCG 58.347 55.000 0.00 0.00 46.90 4.02
378 2819 1.066358 GTTGGCTTCCTAGCTTACCGT 60.066 52.381 0.00 0.00 46.90 4.83
379 2820 0.822164 TGGCTTCCTAGCTTACCGTC 59.178 55.000 0.00 0.00 46.90 4.79
397 2848 2.527100 GTCTATATACATGCGCGGGAC 58.473 52.381 8.83 0.00 0.00 4.46
412 3171 4.365723 CGCGGGACAATTGTATACTAACT 58.634 43.478 11.95 0.00 0.00 2.24
488 3252 5.400188 CACATGTCACAAATAAGCACTGTTG 59.600 40.000 0.00 0.00 0.00 3.33
653 3417 7.502226 TCATGATTGTTAAGTTTCACTGACCTT 59.498 33.333 0.00 0.00 0.00 3.50
971 3741 0.179043 TGTTGGAGCGCCTTAACACA 60.179 50.000 8.34 4.19 34.31 3.72
1601 4371 4.682778 AGTTATTTAGCTGGCCGATGTA 57.317 40.909 0.00 0.00 0.00 2.29
1643 4413 4.253257 CGGAGGAGTACGGCGAGC 62.253 72.222 16.62 5.51 0.00 5.03
2028 4798 3.038946 GCATACGTACAGGCGACAA 57.961 52.632 0.00 0.00 35.59 3.18
2162 4969 5.163602 ACAAACAAATTAGGCAAACAGTCGA 60.164 36.000 0.00 0.00 0.00 4.20
2184 4991 5.551760 AGAATCATTACAAGCACCGAAAG 57.448 39.130 0.00 0.00 0.00 2.62
2235 5042 2.679450 GTGCAATCGTGGTGTACTACA 58.321 47.619 0.00 0.00 0.00 2.74
2288 5095 1.862602 CGGGAAAAAGCAGGGAACGG 61.863 60.000 0.00 0.00 0.00 4.44
2293 5101 1.318576 AAAAGCAGGGAACGGAACAG 58.681 50.000 0.00 0.00 0.00 3.16
2351 5159 1.135888 TCGACACGTATCAGTGGAACG 60.136 52.381 14.16 14.16 45.86 3.95
2360 5168 4.493545 CGTATCAGTGGAACGGCATTAAAC 60.494 45.833 9.48 0.00 45.86 2.01
2361 5169 3.134574 TCAGTGGAACGGCATTAAACT 57.865 42.857 0.00 0.00 45.86 2.66
2362 5170 3.482436 TCAGTGGAACGGCATTAAACTT 58.518 40.909 0.00 0.00 45.86 2.66
2371 5179 6.036191 GGAACGGCATTAAACTTTTTGACAAA 59.964 34.615 0.00 0.00 0.00 2.83
2372 5180 6.969828 ACGGCATTAAACTTTTTGACAAAA 57.030 29.167 9.30 9.30 0.00 2.44
2395 5204 6.524101 AAACTGCTTCTCCAACTAACAAAA 57.476 33.333 0.00 0.00 0.00 2.44
2470 5279 9.282247 GTGAAAGATATGTTTCAATCACATGAC 57.718 33.333 24.82 9.46 45.65 3.06
2512 5321 8.655651 TTGTTCTCTTCTTCTTCTTCTTCTTC 57.344 34.615 0.00 0.00 0.00 2.87
2515 5324 8.978539 GTTCTCTTCTTCTTCTTCTTCTTCTTC 58.021 37.037 0.00 0.00 0.00 2.87
2516 5325 8.477419 TCTCTTCTTCTTCTTCTTCTTCTTCT 57.523 34.615 0.00 0.00 0.00 2.85
2517 5326 8.923270 TCTCTTCTTCTTCTTCTTCTTCTTCTT 58.077 33.333 0.00 0.00 0.00 2.52
2571 5395 8.415950 TTTTCATACATAACATCCAAACCACT 57.584 30.769 0.00 0.00 0.00 4.00
2587 5411 2.223947 ACCACTGTTTCGGGCATTTTTC 60.224 45.455 0.00 0.00 0.00 2.29
2588 5412 2.403259 CACTGTTTCGGGCATTTTTCC 58.597 47.619 0.00 0.00 0.00 3.13
2589 5413 2.035832 CACTGTTTCGGGCATTTTTCCT 59.964 45.455 0.00 0.00 0.00 3.36
2612 5438 7.501225 TCCTTATACGTGACATATCAAGTCTCA 59.499 37.037 0.00 0.00 43.07 3.27
2614 5440 4.783764 ACGTGACATATCAAGTCTCACA 57.216 40.909 0.00 0.00 43.07 3.58
2662 5503 1.028905 TGTGTTCCTTCCCGCAAAAG 58.971 50.000 0.00 0.00 0.00 2.27
2663 5504 1.314730 GTGTTCCTTCCCGCAAAAGA 58.685 50.000 0.00 0.00 0.00 2.52
2899 5741 9.924650 AGTGGTTAAATAGTTCTACACTAGTTG 57.075 33.333 0.00 0.00 44.26 3.16
2909 5751 4.828829 TCTACACTAGTTGGCCTAAAAGC 58.171 43.478 3.32 0.00 0.00 3.51
2945 5787 8.730680 AGCTTTTTGGTGTATAGTTTATGTCTG 58.269 33.333 0.00 0.00 0.00 3.51
2974 5816 4.522405 AGGTGAGATGAGAACGATAGGATG 59.478 45.833 0.00 0.00 43.77 3.51
3037 5879 9.442047 CCAAGACTAAAGAAACTGTTGATAGAT 57.558 33.333 0.00 0.00 0.00 1.98
3258 6107 1.643880 CGCAGATGCTCACATACACA 58.356 50.000 2.95 0.00 36.35 3.72
3267 6116 3.993736 TGCTCACATACACACACATACAC 59.006 43.478 0.00 0.00 0.00 2.90
3273 6122 6.071391 TCACATACACACACATACACTCATCT 60.071 38.462 0.00 0.00 0.00 2.90
3277 6126 6.782082 ACACACACATACACTCATCTCTAT 57.218 37.500 0.00 0.00 0.00 1.98
3278 6127 6.567959 ACACACACATACACTCATCTCTATG 58.432 40.000 0.00 0.00 0.00 2.23
3282 6131 6.416161 CACACATACACTCATCTCTATGAACG 59.584 42.308 0.00 0.00 41.57 3.95
3356 6207 6.753744 TGAGATTAACGAAGTCATCACAGATG 59.246 38.462 0.62 0.62 45.00 2.90
3367 6218 2.654749 TCACAGATGCCTTGTAGTCG 57.345 50.000 0.00 0.00 0.00 4.18
3369 6220 2.094700 TCACAGATGCCTTGTAGTCGAC 60.095 50.000 7.70 7.70 0.00 4.20
3371 6222 2.094494 ACAGATGCCTTGTAGTCGACTG 60.094 50.000 28.12 11.82 0.00 3.51
3377 6240 1.000163 CCTTGTAGTCGACTGCAGTGT 60.000 52.381 30.53 8.47 39.64 3.55
3378 6241 2.054363 CTTGTAGTCGACTGCAGTGTG 58.946 52.381 30.53 16.72 39.64 3.82
3405 6268 4.943705 TGTAGGACTTCAAATCTGATTGGC 59.056 41.667 3.22 0.00 0.00 4.52
3408 6271 4.012374 GGACTTCAAATCTGATTGGCTGA 58.988 43.478 3.22 1.55 0.00 4.26
3412 6275 5.126707 ACTTCAAATCTGATTGGCTGATTCC 59.873 40.000 3.22 0.00 42.25 3.01
3479 6344 5.464057 CGTATGTCTTTTGGTGTGTAACTCA 59.536 40.000 0.00 0.00 38.04 3.41
3502 7023 1.397619 TTGTTGTAGACGTACGTGCG 58.602 50.000 28.16 24.57 37.94 5.34
3635 7156 2.028045 CGACGTGGAATGATTTCTGTCG 59.972 50.000 14.17 14.17 41.06 4.35
3760 7288 1.879796 GCACAAGGTCTCAACTCAGGG 60.880 57.143 0.00 0.00 0.00 4.45
3855 7384 2.035961 GCAAGTGACACCTACTCTGTCA 59.964 50.000 0.84 0.00 44.59 3.58
3890 7419 6.341316 TCCTTTCTTTTCATATCTCTCCACG 58.659 40.000 0.00 0.00 0.00 4.94
3891 7420 5.525378 CCTTTCTTTTCATATCTCTCCACGG 59.475 44.000 0.00 0.00 0.00 4.94
3892 7421 5.932619 TTCTTTTCATATCTCTCCACGGA 57.067 39.130 0.00 0.00 0.00 4.69
3893 7422 5.263968 TCTTTTCATATCTCTCCACGGAC 57.736 43.478 0.00 0.00 0.00 4.79
3894 7423 4.709886 TCTTTTCATATCTCTCCACGGACA 59.290 41.667 0.00 0.00 0.00 4.02
3895 7424 4.386867 TTTCATATCTCTCCACGGACAC 57.613 45.455 0.00 0.00 0.00 3.67
3896 7425 2.307768 TCATATCTCTCCACGGACACC 58.692 52.381 0.00 0.00 0.00 4.16
3897 7426 2.031870 CATATCTCTCCACGGACACCA 58.968 52.381 0.00 0.00 0.00 4.17
3898 7427 1.471119 TATCTCTCCACGGACACCAC 58.529 55.000 0.00 0.00 0.00 4.16
3899 7428 1.258445 ATCTCTCCACGGACACCACC 61.258 60.000 0.00 0.00 0.00 4.61
4034 7563 1.115467 AGTCTATTCCGCACCTGAGG 58.885 55.000 0.00 0.00 36.25 3.86
4048 7577 4.990288 GAGGTCCCTCAACGTGTC 57.010 61.111 8.49 0.00 42.31 3.67
4121 7650 5.200368 ACTCGGAAATGAACTGCAAAAAT 57.800 34.783 0.00 0.00 0.00 1.82
4214 7743 2.885644 CTGAGCAACGCGGCGTAT 60.886 61.111 29.63 17.54 39.99 3.06
4238 7767 3.626924 GTGGAGCACCGGGTGACT 61.627 66.667 30.65 24.33 39.42 3.41
4622 8153 3.477122 GAATAGTCTCGTACGTATGCCG 58.523 50.000 16.05 3.83 44.03 5.69
4758 8289 1.135575 GTCTTTGCCCGCTCAGATTTG 60.136 52.381 0.00 0.00 0.00 2.32
4778 8309 9.389570 AGATTTGTTTTACGAAAATAGGAAACG 57.610 29.630 0.00 0.00 32.22 3.60
4844 8375 6.267471 ACAAAAGAGGCCAACATCTATTTCAA 59.733 34.615 5.01 0.00 0.00 2.69
4899 8430 7.230849 TGGCTCATAATTGACTCAACAATTT 57.769 32.000 10.98 0.00 44.63 1.82
4900 8431 7.669427 TGGCTCATAATTGACTCAACAATTTT 58.331 30.769 10.98 2.60 44.63 1.82
4901 8432 7.599621 TGGCTCATAATTGACTCAACAATTTTG 59.400 33.333 10.98 12.61 44.63 2.44
4914 8445 8.442384 ACTCAACAATTTTGAAAATGTGTTCAC 58.558 29.630 18.95 0.00 37.24 3.18
5016 8547 8.029642 AGAATTAACTCAATGTAGAAACCACG 57.970 34.615 0.00 0.00 0.00 4.94
5017 8548 7.876068 AGAATTAACTCAATGTAGAAACCACGA 59.124 33.333 0.00 0.00 0.00 4.35
5018 8549 8.561738 AATTAACTCAATGTAGAAACCACGAT 57.438 30.769 0.00 0.00 0.00 3.73
5019 8550 7.591006 TTAACTCAATGTAGAAACCACGATC 57.409 36.000 0.00 0.00 0.00 3.69
5020 8551 5.147330 ACTCAATGTAGAAACCACGATCA 57.853 39.130 0.00 0.00 0.00 2.92
5021 8552 5.734720 ACTCAATGTAGAAACCACGATCAT 58.265 37.500 0.00 0.00 0.00 2.45
5022 8553 5.582269 ACTCAATGTAGAAACCACGATCATG 59.418 40.000 0.00 0.00 0.00 3.07
5023 8554 5.729510 TCAATGTAGAAACCACGATCATGA 58.270 37.500 0.00 0.00 0.00 3.07
5024 8555 6.348498 TCAATGTAGAAACCACGATCATGAT 58.652 36.000 8.25 8.25 0.00 2.45
5025 8556 7.496747 TCAATGTAGAAACCACGATCATGATA 58.503 34.615 8.54 0.00 0.00 2.15
5026 8557 8.150296 TCAATGTAGAAACCACGATCATGATAT 58.850 33.333 8.54 0.00 0.00 1.63
5027 8558 8.777413 CAATGTAGAAACCACGATCATGATATT 58.223 33.333 8.54 0.00 0.00 1.28
5028 8559 8.908786 ATGTAGAAACCACGATCATGATATTT 57.091 30.769 8.54 4.83 0.00 1.40
5029 8560 8.365399 TGTAGAAACCACGATCATGATATTTC 57.635 34.615 8.54 12.77 0.00 2.17
5030 8561 8.204160 TGTAGAAACCACGATCATGATATTTCT 58.796 33.333 22.05 22.05 38.39 2.52
5031 8562 7.488187 AGAAACCACGATCATGATATTTCTG 57.512 36.000 19.89 9.13 34.68 3.02
5032 8563 7.275183 AGAAACCACGATCATGATATTTCTGA 58.725 34.615 19.89 0.00 34.68 3.27
5033 8564 7.440556 AGAAACCACGATCATGATATTTCTGAG 59.559 37.037 19.89 6.23 34.68 3.35
5034 8565 6.410942 ACCACGATCATGATATTTCTGAGA 57.589 37.500 8.54 0.00 0.00 3.27
5035 8566 6.820335 ACCACGATCATGATATTTCTGAGAA 58.180 36.000 8.54 0.00 0.00 2.87
5036 8567 6.703607 ACCACGATCATGATATTTCTGAGAAC 59.296 38.462 8.54 0.00 0.00 3.01
5037 8568 6.146837 CCACGATCATGATATTTCTGAGAACC 59.853 42.308 8.54 0.00 0.00 3.62
5038 8569 6.146837 CACGATCATGATATTTCTGAGAACCC 59.853 42.308 8.54 0.00 0.00 4.11
5039 8570 6.042552 ACGATCATGATATTTCTGAGAACCCT 59.957 38.462 8.54 0.00 0.00 4.34
5040 8571 6.589523 CGATCATGATATTTCTGAGAACCCTC 59.410 42.308 8.54 0.00 39.86 4.30
5041 8572 6.179906 TCATGATATTTCTGAGAACCCTCC 57.820 41.667 0.00 0.00 38.66 4.30
5042 8573 5.667172 TCATGATATTTCTGAGAACCCTCCA 59.333 40.000 0.00 0.00 38.66 3.86
5043 8574 6.158520 TCATGATATTTCTGAGAACCCTCCAA 59.841 38.462 0.00 0.00 38.66 3.53
5044 8575 5.994250 TGATATTTCTGAGAACCCTCCAAG 58.006 41.667 0.00 0.00 38.66 3.61
5045 8576 3.728385 ATTTCTGAGAACCCTCCAAGG 57.272 47.619 0.00 0.00 38.66 3.61
5058 8589 4.453480 CCTCCAAGGGATTTATAGCCAA 57.547 45.455 0.00 0.00 0.00 4.52
5059 8590 5.003096 CCTCCAAGGGATTTATAGCCAAT 57.997 43.478 0.00 0.00 0.00 3.16
5060 8591 5.012893 CCTCCAAGGGATTTATAGCCAATC 58.987 45.833 0.00 0.00 0.00 2.67
5061 8592 5.458069 CCTCCAAGGGATTTATAGCCAATCA 60.458 44.000 0.00 0.00 32.98 2.57
5062 8593 5.634118 TCCAAGGGATTTATAGCCAATCAG 58.366 41.667 0.00 0.00 32.98 2.90
5063 8594 4.768968 CCAAGGGATTTATAGCCAATCAGG 59.231 45.833 0.00 0.00 41.84 3.86
5064 8595 5.388654 CAAGGGATTTATAGCCAATCAGGT 58.611 41.667 0.00 0.00 40.61 4.00
5065 8596 5.669798 AGGGATTTATAGCCAATCAGGTT 57.330 39.130 0.00 0.00 40.61 3.50
5066 8597 6.030727 AGGGATTTATAGCCAATCAGGTTT 57.969 37.500 0.00 0.00 40.61 3.27
5067 8598 6.443832 AGGGATTTATAGCCAATCAGGTTTT 58.556 36.000 0.00 0.00 40.61 2.43
5068 8599 6.902974 AGGGATTTATAGCCAATCAGGTTTTT 59.097 34.615 0.00 0.00 40.61 1.94
5069 8600 6.986231 GGGATTTATAGCCAATCAGGTTTTTG 59.014 38.462 0.00 0.00 40.61 2.44
5070 8601 6.479990 GGATTTATAGCCAATCAGGTTTTTGC 59.520 38.462 0.00 0.00 40.61 3.68
5071 8602 3.893326 ATAGCCAATCAGGTTTTTGCC 57.107 42.857 0.00 0.00 40.61 4.52
5072 8603 0.686789 AGCCAATCAGGTTTTTGCCC 59.313 50.000 0.00 0.00 40.61 5.36
5073 8604 0.321564 GCCAATCAGGTTTTTGCCCC 60.322 55.000 0.00 0.00 40.61 5.80
5074 8605 1.351076 CCAATCAGGTTTTTGCCCCT 58.649 50.000 0.00 0.00 0.00 4.79
5075 8606 1.276138 CCAATCAGGTTTTTGCCCCTC 59.724 52.381 0.00 0.00 0.00 4.30
5076 8607 2.250924 CAATCAGGTTTTTGCCCCTCT 58.749 47.619 0.00 0.00 0.00 3.69
5077 8608 2.222227 ATCAGGTTTTTGCCCCTCTC 57.778 50.000 0.00 0.00 0.00 3.20
5078 8609 0.850100 TCAGGTTTTTGCCCCTCTCA 59.150 50.000 0.00 0.00 0.00 3.27
5079 8610 1.428912 TCAGGTTTTTGCCCCTCTCAT 59.571 47.619 0.00 0.00 0.00 2.90
5080 8611 1.821136 CAGGTTTTTGCCCCTCTCATC 59.179 52.381 0.00 0.00 0.00 2.92
5081 8612 0.811281 GGTTTTTGCCCCTCTCATCG 59.189 55.000 0.00 0.00 0.00 3.84
5082 8613 0.811281 GTTTTTGCCCCTCTCATCGG 59.189 55.000 0.00 0.00 0.00 4.18
5083 8614 0.404040 TTTTTGCCCCTCTCATCGGT 59.596 50.000 0.00 0.00 0.00 4.69
5084 8615 0.322456 TTTTGCCCCTCTCATCGGTG 60.322 55.000 0.00 0.00 0.00 4.94
5085 8616 2.196997 TTTGCCCCTCTCATCGGTGG 62.197 60.000 0.00 0.00 0.00 4.61
5086 8617 4.554036 GCCCCTCTCATCGGTGGC 62.554 72.222 0.00 0.00 33.04 5.01
5087 8618 3.083349 CCCCTCTCATCGGTGGCA 61.083 66.667 0.00 0.00 0.00 4.92
5088 8619 2.187946 CCCTCTCATCGGTGGCAC 59.812 66.667 9.70 9.70 0.00 5.01
5089 8620 2.362369 CCCTCTCATCGGTGGCACT 61.362 63.158 18.45 0.00 0.00 4.40
5090 8621 1.043116 CCCTCTCATCGGTGGCACTA 61.043 60.000 18.45 6.64 0.00 2.74
5091 8622 1.043816 CCTCTCATCGGTGGCACTAT 58.956 55.000 18.45 8.82 0.00 2.12
5092 8623 1.000283 CCTCTCATCGGTGGCACTATC 60.000 57.143 18.45 0.00 0.00 2.08
5093 8624 0.668535 TCTCATCGGTGGCACTATCG 59.331 55.000 18.45 12.85 0.00 2.92
5094 8625 0.319040 CTCATCGGTGGCACTATCGG 60.319 60.000 18.45 4.19 0.00 4.18
5095 8626 1.040893 TCATCGGTGGCACTATCGGT 61.041 55.000 18.45 6.13 0.00 4.69
5096 8627 0.179084 CATCGGTGGCACTATCGGTT 60.179 55.000 18.45 1.91 0.00 4.44
5097 8628 0.104304 ATCGGTGGCACTATCGGTTC 59.896 55.000 18.45 0.00 0.00 3.62
5098 8629 1.216977 CGGTGGCACTATCGGTTCA 59.783 57.895 18.45 0.00 0.00 3.18
5099 8630 1.082117 CGGTGGCACTATCGGTTCAC 61.082 60.000 18.45 0.00 0.00 3.18
5100 8631 0.743345 GGTGGCACTATCGGTTCACC 60.743 60.000 18.45 0.00 40.15 4.02
5101 8632 0.743345 GTGGCACTATCGGTTCACCC 60.743 60.000 11.13 0.00 0.00 4.61
5102 8633 1.153229 GGCACTATCGGTTCACCCC 60.153 63.158 0.00 0.00 0.00 4.95
5103 8634 1.600107 GCACTATCGGTTCACCCCA 59.400 57.895 0.00 0.00 0.00 4.96
5104 8635 0.180406 GCACTATCGGTTCACCCCAT 59.820 55.000 0.00 0.00 0.00 4.00
5105 8636 1.810412 GCACTATCGGTTCACCCCATC 60.810 57.143 0.00 0.00 0.00 3.51
5106 8637 1.129058 ACTATCGGTTCACCCCATCC 58.871 55.000 0.00 0.00 0.00 3.51
5107 8638 0.396811 CTATCGGTTCACCCCATCCC 59.603 60.000 0.00 0.00 0.00 3.85
5108 8639 0.030501 TATCGGTTCACCCCATCCCT 60.031 55.000 0.00 0.00 0.00 4.20
5109 8640 1.635817 ATCGGTTCACCCCATCCCTG 61.636 60.000 0.00 0.00 0.00 4.45
5110 8641 2.683475 GGTTCACCCCATCCCTGG 59.317 66.667 0.00 0.00 42.73 4.45
5111 8642 2.238701 GGTTCACCCCATCCCTGGT 61.239 63.158 0.00 0.00 41.37 4.00
5114 8645 4.447342 CACCCCATCCCTGGTGGC 62.447 72.222 0.70 0.00 46.67 5.01
5116 8647 4.447342 CCCCATCCCTGGTGGCAC 62.447 72.222 9.70 9.70 41.37 5.01
5117 8648 3.341629 CCCATCCCTGGTGGCACT 61.342 66.667 18.45 0.00 41.37 4.40
5118 8649 2.000701 CCCATCCCTGGTGGCACTA 61.001 63.158 18.45 11.05 41.37 2.74
5119 8650 1.355718 CCCATCCCTGGTGGCACTAT 61.356 60.000 18.45 1.20 41.37 2.12
5120 8651 0.109342 CCATCCCTGGTGGCACTATC 59.891 60.000 18.45 1.07 37.79 2.08
5121 8652 0.250038 CATCCCTGGTGGCACTATCG 60.250 60.000 18.45 4.37 0.00 2.92
5122 8653 0.398522 ATCCCTGGTGGCACTATCGA 60.399 55.000 18.45 9.90 0.00 3.59
5123 8654 0.398522 TCCCTGGTGGCACTATCGAT 60.399 55.000 18.45 2.16 0.00 3.59
5124 8655 0.034059 CCCTGGTGGCACTATCGATC 59.966 60.000 18.45 0.00 0.00 3.69
5125 8656 1.043816 CCTGGTGGCACTATCGATCT 58.956 55.000 18.45 0.00 0.00 2.75
5126 8657 1.414181 CCTGGTGGCACTATCGATCTT 59.586 52.381 18.45 0.00 0.00 2.40
5127 8658 2.477825 CTGGTGGCACTATCGATCTTG 58.522 52.381 18.45 0.96 0.00 3.02
5128 8659 1.138859 TGGTGGCACTATCGATCTTGG 59.861 52.381 18.45 0.00 0.00 3.61
5129 8660 1.412710 GGTGGCACTATCGATCTTGGA 59.587 52.381 18.45 0.00 0.00 3.53
5130 8661 2.546795 GGTGGCACTATCGATCTTGGAG 60.547 54.545 18.45 0.00 0.00 3.86
5131 8662 1.688735 TGGCACTATCGATCTTGGAGG 59.311 52.381 0.00 0.00 0.00 4.30
5132 8663 1.689273 GGCACTATCGATCTTGGAGGT 59.311 52.381 0.00 0.00 0.00 3.85
5133 8664 2.546795 GGCACTATCGATCTTGGAGGTG 60.547 54.545 0.00 2.73 0.00 4.00
5134 8665 2.748605 CACTATCGATCTTGGAGGTGC 58.251 52.381 0.00 0.00 0.00 5.01
5135 8666 1.338337 ACTATCGATCTTGGAGGTGCG 59.662 52.381 0.00 0.00 0.00 5.34
5136 8667 0.673985 TATCGATCTTGGAGGTGCGG 59.326 55.000 0.00 0.00 0.00 5.69
5137 8668 2.650813 ATCGATCTTGGAGGTGCGGC 62.651 60.000 0.00 0.00 0.00 6.53
5138 8669 2.586792 GATCTTGGAGGTGCGGCT 59.413 61.111 0.00 0.00 0.00 5.52
5139 8670 1.817099 GATCTTGGAGGTGCGGCTG 60.817 63.158 0.00 0.00 0.00 4.85
5140 8671 2.244117 GATCTTGGAGGTGCGGCTGA 62.244 60.000 0.00 0.00 0.00 4.26
5141 8672 1.630126 ATCTTGGAGGTGCGGCTGAT 61.630 55.000 0.00 0.00 0.00 2.90
5142 8673 1.817099 CTTGGAGGTGCGGCTGATC 60.817 63.158 0.00 0.00 0.00 2.92
5143 8674 3.329542 TTGGAGGTGCGGCTGATCC 62.330 63.158 0.00 6.27 0.00 3.36
5144 8675 4.554036 GGAGGTGCGGCTGATCCC 62.554 72.222 0.00 0.00 0.00 3.85
5151 8682 2.047274 CGGCTGATCCCGTTGTGT 60.047 61.111 2.52 0.00 43.24 3.72
5152 8683 1.671054 CGGCTGATCCCGTTGTGTT 60.671 57.895 2.52 0.00 43.24 3.32
5153 8684 1.875963 GGCTGATCCCGTTGTGTTG 59.124 57.895 0.00 0.00 0.00 3.33
5154 8685 1.210155 GCTGATCCCGTTGTGTTGC 59.790 57.895 0.00 0.00 0.00 4.17
5155 8686 1.497278 CTGATCCCGTTGTGTTGCG 59.503 57.895 0.00 0.00 0.00 4.85
5156 8687 1.227704 TGATCCCGTTGTGTTGCGT 60.228 52.632 0.00 0.00 0.00 5.24
5157 8688 1.206578 GATCCCGTTGTGTTGCGTG 59.793 57.895 0.00 0.00 0.00 5.34
5158 8689 1.503818 GATCCCGTTGTGTTGCGTGT 61.504 55.000 0.00 0.00 0.00 4.49
5159 8690 1.781025 ATCCCGTTGTGTTGCGTGTG 61.781 55.000 0.00 0.00 0.00 3.82
5160 8691 2.024022 CCGTTGTGTTGCGTGTGG 59.976 61.111 0.00 0.00 0.00 4.17
5161 8692 2.024022 CGTTGTGTTGCGTGTGGG 59.976 61.111 0.00 0.00 0.00 4.61
5162 8693 2.465299 CGTTGTGTTGCGTGTGGGA 61.465 57.895 0.00 0.00 0.00 4.37
5163 8694 1.355210 GTTGTGTTGCGTGTGGGAG 59.645 57.895 0.00 0.00 0.00 4.30
5164 8695 1.821759 TTGTGTTGCGTGTGGGAGG 60.822 57.895 0.00 0.00 0.00 4.30
5165 8696 2.978010 GTGTTGCGTGTGGGAGGG 60.978 66.667 0.00 0.00 0.00 4.30
5166 8697 3.484806 TGTTGCGTGTGGGAGGGT 61.485 61.111 0.00 0.00 0.00 4.34
5167 8698 2.203294 GTTGCGTGTGGGAGGGTT 60.203 61.111 0.00 0.00 0.00 4.11
5168 8699 2.112297 TTGCGTGTGGGAGGGTTC 59.888 61.111 0.00 0.00 0.00 3.62
5169 8700 2.448582 TTGCGTGTGGGAGGGTTCT 61.449 57.895 0.00 0.00 0.00 3.01
5170 8701 2.047179 GCGTGTGGGAGGGTTCTC 60.047 66.667 0.00 0.00 39.25 2.87
5171 8702 2.879233 GCGTGTGGGAGGGTTCTCA 61.879 63.158 0.00 0.00 41.69 3.27
5172 8703 1.983224 CGTGTGGGAGGGTTCTCAT 59.017 57.895 0.00 0.00 41.69 2.90
5173 8704 1.191535 CGTGTGGGAGGGTTCTCATA 58.808 55.000 0.00 0.00 41.69 2.15
5185 8716 6.768381 GGAGGGTTCTCATATTTCTTTAGGTG 59.232 42.308 0.00 0.00 41.69 4.00
5221 8752 2.198287 GGGGAGGCATAGCGACGTA 61.198 63.158 0.00 0.00 0.00 3.57
5231 8762 4.152526 GCATAGCGACGTATCAGAGTTAG 58.847 47.826 0.00 0.00 0.00 2.34
5240 8771 7.064674 CGACGTATCAGAGTTAGAATAGTGTC 58.935 42.308 0.00 0.00 0.00 3.67
5245 8776 4.030913 CAGAGTTAGAATAGTGTCCCCCA 58.969 47.826 0.00 0.00 0.00 4.96
5261 8792 2.511659 CCCCACATCCTATTCATGCTG 58.488 52.381 0.00 0.00 0.00 4.41
5280 8811 1.268283 GGGGAGGAGACACTTGGAGG 61.268 65.000 0.00 0.00 0.00 4.30
5284 8815 1.002544 GAGGAGACACTTGGAGGTTGG 59.997 57.143 0.00 0.00 0.00 3.77
5288 8819 2.672996 CACTTGGAGGTTGGGGCG 60.673 66.667 0.00 0.00 0.00 6.13
5289 8820 4.660938 ACTTGGAGGTTGGGGCGC 62.661 66.667 0.00 0.00 0.00 6.53
5299 8830 1.077787 TTGGGGCGCATCTACTTGG 60.078 57.895 10.83 0.00 0.00 3.61
5301 8832 2.590092 GGGCGCATCTACTTGGGT 59.410 61.111 10.83 0.00 32.52 4.51
5302 8833 1.523938 GGGCGCATCTACTTGGGTC 60.524 63.158 10.83 0.00 33.76 4.46
5303 8834 1.523938 GGCGCATCTACTTGGGTCC 60.524 63.158 10.83 0.00 32.52 4.46
5304 8835 1.220749 GCGCATCTACTTGGGTCCA 59.779 57.895 0.30 0.00 32.52 4.02
5305 8836 0.811616 GCGCATCTACTTGGGTCCAG 60.812 60.000 0.30 0.00 32.52 3.86
5306 8837 0.537188 CGCATCTACTTGGGTCCAGT 59.463 55.000 0.00 0.00 0.00 4.00
5307 8838 1.471676 CGCATCTACTTGGGTCCAGTC 60.472 57.143 0.00 0.00 0.00 3.51
5308 8839 1.555075 GCATCTACTTGGGTCCAGTCA 59.445 52.381 0.00 0.00 0.00 3.41
5326 8857 3.885297 AGTCATTGTTGGTCTTTGACAGG 59.115 43.478 4.42 0.00 39.27 4.00
5332 8863 3.452990 TGTTGGTCTTTGACAGGTCTGTA 59.547 43.478 3.35 0.00 45.05 2.74
5333 8864 4.080807 TGTTGGTCTTTGACAGGTCTGTAA 60.081 41.667 3.35 0.00 45.05 2.41
5335 8866 5.304686 TGGTCTTTGACAGGTCTGTAAAT 57.695 39.130 3.35 0.00 45.05 1.40
5336 8867 5.305585 TGGTCTTTGACAGGTCTGTAAATC 58.694 41.667 3.35 0.00 45.05 2.17
5338 8869 5.409826 GGTCTTTGACAGGTCTGTAAATCTG 59.590 44.000 3.35 0.00 45.05 2.90
5339 8870 4.997395 TCTTTGACAGGTCTGTAAATCTGC 59.003 41.667 3.35 0.00 45.05 4.26
5340 8871 4.623932 TTGACAGGTCTGTAAATCTGCT 57.376 40.909 3.35 0.00 45.05 4.24
5341 8872 5.738619 TTGACAGGTCTGTAAATCTGCTA 57.261 39.130 3.35 0.00 45.05 3.49
5364 8898 4.462834 AGTTGTCTCTGACGGATTCATGTA 59.537 41.667 0.00 0.00 34.95 2.29
5366 8900 4.270008 TGTCTCTGACGGATTCATGTAGA 58.730 43.478 0.00 0.00 34.95 2.59
5371 8905 5.359756 TCTGACGGATTCATGTAGATTTGG 58.640 41.667 0.00 0.00 32.17 3.28
5372 8906 5.097742 TGACGGATTCATGTAGATTTGGT 57.902 39.130 0.00 0.00 0.00 3.67
5404 8940 7.718272 TGGTTGTTAGTGTGTTTGTAGATAC 57.282 36.000 0.00 0.00 0.00 2.24
5424 8960 4.664150 ACGGTTGTTCCAATCAATGTTT 57.336 36.364 0.00 0.00 35.57 2.83
5427 8963 5.522097 ACGGTTGTTCCAATCAATGTTTTTC 59.478 36.000 0.00 0.00 35.57 2.29
5430 8966 7.201600 CGGTTGTTCCAATCAATGTTTTTCTTT 60.202 33.333 0.00 0.00 35.57 2.52
5436 8972 9.709495 TTCCAATCAATGTTTTTCTTTATCAGG 57.291 29.630 0.00 0.00 0.00 3.86
5451 8987 5.838531 TTATCAGGGACGTTTGTTGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
5452 8988 6.939132 TTATCAGGGACGTTTGTTGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
5453 8989 4.886247 TCAGGGACGTTTGTTGTTTTAG 57.114 40.909 0.00 0.00 0.00 1.85
5454 8990 4.263435 TCAGGGACGTTTGTTGTTTTAGT 58.737 39.130 0.00 0.00 0.00 2.24
5455 8991 4.095185 TCAGGGACGTTTGTTGTTTTAGTG 59.905 41.667 0.00 0.00 0.00 2.74
5456 8992 3.110358 GGGACGTTTGTTGTTTTAGTGC 58.890 45.455 0.00 0.00 0.00 4.40
5457 8993 3.427773 GGGACGTTTGTTGTTTTAGTGCA 60.428 43.478 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 2.564947 TGCCACTCAGGTTGTTGTTTTT 59.435 40.909 0.00 0.00 40.61 1.94
107 108 2.175202 TGCCACTCAGGTTGTTGTTTT 58.825 42.857 0.00 0.00 40.61 2.43
108 109 1.846007 TGCCACTCAGGTTGTTGTTT 58.154 45.000 0.00 0.00 40.61 2.83
109 110 2.071778 ATGCCACTCAGGTTGTTGTT 57.928 45.000 0.00 0.00 40.61 2.83
110 111 2.071778 AATGCCACTCAGGTTGTTGT 57.928 45.000 0.00 0.00 40.61 3.32
111 112 2.361757 TGAAATGCCACTCAGGTTGTTG 59.638 45.455 0.00 0.00 40.61 3.33
112 113 2.665165 TGAAATGCCACTCAGGTTGTT 58.335 42.857 0.00 0.00 40.61 2.83
265 2706 2.941480 TCTTATCTAGGTGACGTCCCC 58.059 52.381 14.12 11.70 0.00 4.81
331 2772 0.829990 TTACATGCCTCTCGGATGCA 59.170 50.000 6.38 6.38 37.56 3.96
373 2814 2.096335 CCGCGCATGTATATAGACGGTA 59.904 50.000 8.75 0.00 34.83 4.02
374 2815 1.135489 CCGCGCATGTATATAGACGGT 60.135 52.381 8.75 0.00 34.83 4.83
375 2816 1.545759 CCGCGCATGTATATAGACGG 58.454 55.000 8.75 0.00 0.00 4.79
376 2817 1.131693 TCCCGCGCATGTATATAGACG 59.868 52.381 8.75 0.00 0.00 4.18
377 2818 2.094906 TGTCCCGCGCATGTATATAGAC 60.095 50.000 8.75 0.27 0.00 2.59
378 2819 2.164338 TGTCCCGCGCATGTATATAGA 58.836 47.619 8.75 0.00 0.00 1.98
379 2820 2.647529 TGTCCCGCGCATGTATATAG 57.352 50.000 8.75 0.00 0.00 1.31
488 3252 6.858993 GTCTATAGGTCACATCGAGAATGAAC 59.141 42.308 0.00 3.76 38.83 3.18
543 3307 1.410517 TCTCTTAGATCCCTTGCAGCG 59.589 52.381 0.00 0.00 0.00 5.18
971 3741 0.616679 TACCTAGCTTGAGGCGGGTT 60.617 55.000 11.53 0.00 44.47 4.11
1518 4288 1.946081 GTAGGTAGACGTAGGTGCCTC 59.054 57.143 5.15 0.00 0.00 4.70
1601 4371 0.113580 TCCCTGCCATGCATGCATAT 59.886 50.000 31.73 10.77 38.13 1.78
1643 4413 2.263741 GGCACAGCTTCACCACCTG 61.264 63.158 0.00 0.00 0.00 4.00
1679 4449 2.451493 TCCCAGCCCCTTGGACAA 60.451 61.111 0.00 0.00 40.87 3.18
2162 4969 4.396166 CCTTTCGGTGCTTGTAATGATTCT 59.604 41.667 0.00 0.00 0.00 2.40
2288 5095 0.036671 CCCCACTACCGGTTCTGTTC 60.037 60.000 15.04 0.00 0.00 3.18
2293 5101 2.663075 GGACCCCCACTACCGGTTC 61.663 68.421 15.04 0.06 0.00 3.62
2371 5179 6.524101 TTTGTTAGTTGGAGAAGCAGTTTT 57.476 33.333 0.00 0.00 0.00 2.43
2372 5180 6.152831 ACTTTTGTTAGTTGGAGAAGCAGTTT 59.847 34.615 0.00 0.00 0.00 2.66
2512 5321 9.883142 AATTATAGACACCAGAAGAAGAAGAAG 57.117 33.333 0.00 0.00 0.00 2.85
2515 5324 8.482128 AGGAATTATAGACACCAGAAGAAGAAG 58.518 37.037 0.00 0.00 0.00 2.85
2516 5325 8.260818 CAGGAATTATAGACACCAGAAGAAGAA 58.739 37.037 0.00 0.00 0.00 2.52
2517 5326 7.400339 ACAGGAATTATAGACACCAGAAGAAGA 59.600 37.037 0.00 0.00 0.00 2.87
2557 5381 2.360801 CCGAAACAGTGGTTTGGATGTT 59.639 45.455 21.23 0.00 46.84 2.71
2571 5395 5.392165 CGTATAAGGAAAAATGCCCGAAACA 60.392 40.000 0.00 0.00 0.00 2.83
2587 5411 7.591795 GTGAGACTTGATATGTCACGTATAAGG 59.408 40.741 1.48 0.00 37.01 2.69
2588 5412 8.129211 TGTGAGACTTGATATGTCACGTATAAG 58.871 37.037 1.48 0.00 40.37 1.73
2589 5413 7.992008 TGTGAGACTTGATATGTCACGTATAA 58.008 34.615 1.48 0.00 40.37 0.98
2677 5518 3.915437 ATTTTCGCACGGAAGAAACAT 57.085 38.095 1.84 0.00 36.26 2.71
2687 5528 4.201485 GCTTTTGGTGAATATTTTCGCACG 60.201 41.667 10.90 0.00 42.88 5.34
2888 5730 4.392138 GTGCTTTTAGGCCAACTAGTGTAG 59.608 45.833 5.01 0.00 32.16 2.74
2899 5741 4.363138 GCTCAATAATGTGCTTTTAGGCC 58.637 43.478 0.00 0.00 41.63 5.19
2909 5751 9.507280 CTATACACCAAAAAGCTCAATAATGTG 57.493 33.333 0.00 0.00 0.00 3.21
2945 5787 2.159310 CGTTCTCATCTCACCTCACTCC 60.159 54.545 0.00 0.00 0.00 3.85
3258 6107 6.499172 CGTTCATAGAGATGAGTGTATGTGT 58.501 40.000 0.00 0.00 43.03 3.72
3267 6116 3.183976 GTGCATGCGTTCATAGAGATGAG 59.816 47.826 14.09 0.00 43.03 2.90
3273 6122 3.555547 GTGTATGTGCATGCGTTCATAGA 59.444 43.478 21.64 19.21 0.00 1.98
3277 6126 1.807139 AGTGTATGTGCATGCGTTCA 58.193 45.000 14.09 12.44 0.00 3.18
3278 6127 2.900122 AAGTGTATGTGCATGCGTTC 57.100 45.000 14.09 6.79 0.00 3.95
3282 6131 3.312421 ACGGATAAAGTGTATGTGCATGC 59.688 43.478 11.82 11.82 0.00 4.06
3338 6189 2.027745 AGGCATCTGTGATGACTTCGTT 60.028 45.455 9.88 0.00 32.45 3.85
3356 6207 0.038159 ACTGCAGTCGACTACAAGGC 60.038 55.000 19.57 17.31 0.00 4.35
3367 6218 2.035961 TCCTACACTTCACACTGCAGTC 59.964 50.000 18.64 0.00 0.00 3.51
3369 6220 2.036475 AGTCCTACACTTCACACTGCAG 59.964 50.000 13.48 13.48 26.56 4.41
3371 6222 2.821991 AGTCCTACACTTCACACTGC 57.178 50.000 0.00 0.00 26.56 4.40
3408 6271 7.616935 AGATGGTTATGTTCTTTGTGATGGAAT 59.383 33.333 0.00 0.00 0.00 3.01
3412 6275 7.912250 GCTTAGATGGTTATGTTCTTTGTGATG 59.088 37.037 0.00 0.00 0.00 3.07
3479 6344 3.243643 GCACGTACGTCTACAACAAAGTT 59.756 43.478 19.94 0.00 0.00 2.66
3502 7023 0.730494 GCGCATGCTCACAAAGGTTC 60.730 55.000 17.13 0.00 38.39 3.62
3594 7115 6.632834 ACGTCGATCTTTGAACTTTTTCATTG 59.367 34.615 0.00 0.00 41.50 2.82
3760 7288 5.063880 AGAAATATGGCATTTCCTACGGTC 58.936 41.667 4.78 0.00 38.44 4.79
3898 7427 3.335579 GCAAACTAGTTAGACCACTGGG 58.664 50.000 8.92 0.00 41.29 4.45
3899 7428 2.993899 CGCAAACTAGTTAGACCACTGG 59.006 50.000 8.92 0.00 0.00 4.00
4034 7563 0.878961 GGTGTGACACGTTGAGGGAC 60.879 60.000 9.90 0.00 34.83 4.46
4048 7577 2.101415 TGATCGAGAGGCTATTGGTGTG 59.899 50.000 0.00 0.00 0.00 3.82
4214 7743 2.571757 CGGTGCTCCACGCTCTTA 59.428 61.111 5.52 0.00 40.11 2.10
4342 7871 1.327690 GGTCATCTCCGGGTACAGCA 61.328 60.000 0.00 0.00 0.00 4.41
4596 8127 1.063174 ACGTACGAGACTATTCCGTGC 59.937 52.381 24.41 0.00 37.69 5.34
4656 8187 7.447545 AGCAGTCTCACTAATTATATACGTCCA 59.552 37.037 0.00 0.00 0.00 4.02
4657 8188 7.818642 AGCAGTCTCACTAATTATATACGTCC 58.181 38.462 0.00 0.00 0.00 4.79
4778 8309 2.166254 CACACATATTGGCCAGGGAAAC 59.834 50.000 5.11 0.00 0.00 2.78
4990 8521 8.504005 CGTGGTTTCTACATTGAGTTAATTCTT 58.496 33.333 0.00 0.00 0.00 2.52
4991 8522 7.876068 TCGTGGTTTCTACATTGAGTTAATTCT 59.124 33.333 0.00 0.00 0.00 2.40
4992 8523 8.025243 TCGTGGTTTCTACATTGAGTTAATTC 57.975 34.615 0.00 0.00 0.00 2.17
4993 8524 7.972832 TCGTGGTTTCTACATTGAGTTAATT 57.027 32.000 0.00 0.00 0.00 1.40
4994 8525 7.822334 TGATCGTGGTTTCTACATTGAGTTAAT 59.178 33.333 0.00 0.00 0.00 1.40
4995 8526 7.156000 TGATCGTGGTTTCTACATTGAGTTAA 58.844 34.615 0.00 0.00 0.00 2.01
4996 8527 6.693466 TGATCGTGGTTTCTACATTGAGTTA 58.307 36.000 0.00 0.00 0.00 2.24
4997 8528 5.547465 TGATCGTGGTTTCTACATTGAGTT 58.453 37.500 0.00 0.00 0.00 3.01
4998 8529 5.147330 TGATCGTGGTTTCTACATTGAGT 57.853 39.130 0.00 0.00 0.00 3.41
4999 8530 5.812127 TCATGATCGTGGTTTCTACATTGAG 59.188 40.000 14.91 0.00 0.00 3.02
5000 8531 5.729510 TCATGATCGTGGTTTCTACATTGA 58.270 37.500 14.91 0.00 0.00 2.57
5001 8532 6.609237 ATCATGATCGTGGTTTCTACATTG 57.391 37.500 14.91 0.00 0.00 2.82
5002 8533 8.908786 AATATCATGATCGTGGTTTCTACATT 57.091 30.769 12.53 0.84 0.00 2.71
5003 8534 8.908786 AAATATCATGATCGTGGTTTCTACAT 57.091 30.769 12.53 1.41 0.00 2.29
5004 8535 8.204160 AGAAATATCATGATCGTGGTTTCTACA 58.796 33.333 25.47 5.65 34.12 2.74
5005 8536 8.491152 CAGAAATATCATGATCGTGGTTTCTAC 58.509 37.037 25.81 12.33 34.12 2.59
5006 8537 8.421002 TCAGAAATATCATGATCGTGGTTTCTA 58.579 33.333 25.81 18.03 34.12 2.10
5007 8538 7.275183 TCAGAAATATCATGATCGTGGTTTCT 58.725 34.615 23.38 23.38 35.68 2.52
5008 8539 7.439356 TCTCAGAAATATCATGATCGTGGTTTC 59.561 37.037 12.53 21.13 0.00 2.78
5009 8540 7.275183 TCTCAGAAATATCATGATCGTGGTTT 58.725 34.615 12.53 12.70 0.00 3.27
5010 8541 6.820335 TCTCAGAAATATCATGATCGTGGTT 58.180 36.000 12.53 5.90 0.00 3.67
5011 8542 6.410942 TCTCAGAAATATCATGATCGTGGT 57.589 37.500 12.53 10.60 0.00 4.16
5012 8543 6.146837 GGTTCTCAGAAATATCATGATCGTGG 59.853 42.308 12.53 0.00 0.00 4.94
5013 8544 6.146837 GGGTTCTCAGAAATATCATGATCGTG 59.853 42.308 12.53 8.74 0.00 4.35
5014 8545 6.042552 AGGGTTCTCAGAAATATCATGATCGT 59.957 38.462 12.53 0.00 0.00 3.73
5015 8546 6.462500 AGGGTTCTCAGAAATATCATGATCG 58.538 40.000 12.53 0.00 0.00 3.69
5016 8547 6.878389 GGAGGGTTCTCAGAAATATCATGATC 59.122 42.308 12.53 0.00 41.69 2.92
5017 8548 6.331042 TGGAGGGTTCTCAGAAATATCATGAT 59.669 38.462 13.81 13.81 41.69 2.45
5018 8549 5.667172 TGGAGGGTTCTCAGAAATATCATGA 59.333 40.000 0.00 0.00 41.69 3.07
5019 8550 5.933617 TGGAGGGTTCTCAGAAATATCATG 58.066 41.667 0.00 0.00 41.69 3.07
5020 8551 6.410157 CCTTGGAGGGTTCTCAGAAATATCAT 60.410 42.308 0.00 0.00 41.69 2.45
5021 8552 5.104360 CCTTGGAGGGTTCTCAGAAATATCA 60.104 44.000 0.00 0.00 41.69 2.15
5022 8553 5.372373 CCTTGGAGGGTTCTCAGAAATATC 58.628 45.833 0.00 0.00 41.69 1.63
5023 8554 5.379706 CCTTGGAGGGTTCTCAGAAATAT 57.620 43.478 0.00 0.00 41.69 1.28
5024 8555 4.844349 CCTTGGAGGGTTCTCAGAAATA 57.156 45.455 0.00 0.00 41.69 1.40
5025 8556 3.728385 CCTTGGAGGGTTCTCAGAAAT 57.272 47.619 0.00 0.00 41.69 2.17
5037 8568 4.453480 TTGGCTATAAATCCCTTGGAGG 57.547 45.455 0.00 0.00 34.05 4.30
5038 8569 5.634118 TGATTGGCTATAAATCCCTTGGAG 58.366 41.667 0.00 0.00 34.05 3.86
5039 8570 5.458069 CCTGATTGGCTATAAATCCCTTGGA 60.458 44.000 0.00 0.00 33.85 3.53
5040 8571 4.768968 CCTGATTGGCTATAAATCCCTTGG 59.231 45.833 0.00 0.00 33.85 3.61
5041 8572 5.388654 ACCTGATTGGCTATAAATCCCTTG 58.611 41.667 0.00 0.00 40.22 3.61
5042 8573 5.669798 ACCTGATTGGCTATAAATCCCTT 57.330 39.130 0.00 0.00 40.22 3.95
5043 8574 5.669798 AACCTGATTGGCTATAAATCCCT 57.330 39.130 0.00 0.00 40.22 4.20
5044 8575 6.731292 AAAACCTGATTGGCTATAAATCCC 57.269 37.500 0.00 0.00 40.22 3.85
5045 8576 6.479990 GCAAAAACCTGATTGGCTATAAATCC 59.520 38.462 0.00 0.00 40.22 3.01
5046 8577 6.479990 GGCAAAAACCTGATTGGCTATAAATC 59.520 38.462 5.00 0.00 45.55 2.17
5047 8578 6.348498 GGCAAAAACCTGATTGGCTATAAAT 58.652 36.000 5.00 0.00 45.55 1.40
5048 8579 5.729510 GGCAAAAACCTGATTGGCTATAAA 58.270 37.500 5.00 0.00 45.55 1.40
5049 8580 5.337578 GGCAAAAACCTGATTGGCTATAA 57.662 39.130 5.00 0.00 45.55 0.98
5051 8582 3.893326 GGCAAAAACCTGATTGGCTAT 57.107 42.857 5.00 0.00 45.55 2.97
5055 8586 1.276138 GAGGGGCAAAAACCTGATTGG 59.724 52.381 0.00 0.00 37.18 3.16
5056 8587 2.232208 GAGAGGGGCAAAAACCTGATTG 59.768 50.000 0.00 0.00 37.18 2.67
5057 8588 2.158325 TGAGAGGGGCAAAAACCTGATT 60.158 45.455 0.00 0.00 37.18 2.57
5058 8589 1.428912 TGAGAGGGGCAAAAACCTGAT 59.571 47.619 0.00 0.00 37.18 2.90
5059 8590 0.850100 TGAGAGGGGCAAAAACCTGA 59.150 50.000 0.00 0.00 37.18 3.86
5060 8591 1.821136 GATGAGAGGGGCAAAAACCTG 59.179 52.381 0.00 0.00 37.18 4.00
5061 8592 1.614317 CGATGAGAGGGGCAAAAACCT 60.614 52.381 0.00 0.00 40.54 3.50
5062 8593 0.811281 CGATGAGAGGGGCAAAAACC 59.189 55.000 0.00 0.00 0.00 3.27
5063 8594 0.811281 CCGATGAGAGGGGCAAAAAC 59.189 55.000 0.00 0.00 0.00 2.43
5064 8595 0.404040 ACCGATGAGAGGGGCAAAAA 59.596 50.000 0.00 0.00 0.00 1.94
5065 8596 0.322456 CACCGATGAGAGGGGCAAAA 60.322 55.000 0.00 0.00 0.00 2.44
5066 8597 1.299648 CACCGATGAGAGGGGCAAA 59.700 57.895 0.00 0.00 0.00 3.68
5067 8598 2.669133 CCACCGATGAGAGGGGCAA 61.669 63.158 0.00 0.00 0.00 4.52
5068 8599 3.083349 CCACCGATGAGAGGGGCA 61.083 66.667 0.00 0.00 0.00 5.36
5069 8600 4.554036 GCCACCGATGAGAGGGGC 62.554 72.222 0.00 0.00 37.72 5.80
5070 8601 3.083349 TGCCACCGATGAGAGGGG 61.083 66.667 0.00 0.00 0.00 4.79
5071 8602 1.043116 TAGTGCCACCGATGAGAGGG 61.043 60.000 0.00 0.00 0.00 4.30
5072 8603 1.000283 GATAGTGCCACCGATGAGAGG 60.000 57.143 0.00 0.00 0.00 3.69
5073 8604 1.335415 CGATAGTGCCACCGATGAGAG 60.335 57.143 0.00 0.00 0.00 3.20
5074 8605 0.668535 CGATAGTGCCACCGATGAGA 59.331 55.000 0.00 0.00 0.00 3.27
5075 8606 0.319040 CCGATAGTGCCACCGATGAG 60.319 60.000 0.00 0.00 0.00 2.90
5076 8607 1.040893 ACCGATAGTGCCACCGATGA 61.041 55.000 0.00 0.00 0.00 2.92
5077 8608 0.179084 AACCGATAGTGCCACCGATG 60.179 55.000 0.00 0.00 0.00 3.84
5078 8609 0.104304 GAACCGATAGTGCCACCGAT 59.896 55.000 0.00 0.00 0.00 4.18
5079 8610 1.252215 TGAACCGATAGTGCCACCGA 61.252 55.000 0.00 0.00 0.00 4.69
5080 8611 1.082117 GTGAACCGATAGTGCCACCG 61.082 60.000 0.00 0.00 30.66 4.94
5081 8612 0.743345 GGTGAACCGATAGTGCCACC 60.743 60.000 0.00 0.00 42.30 4.61
5082 8613 0.743345 GGGTGAACCGATAGTGCCAC 60.743 60.000 0.00 0.00 36.71 5.01
5083 8614 1.600107 GGGTGAACCGATAGTGCCA 59.400 57.895 0.00 0.00 36.71 4.92
5084 8615 1.153229 GGGGTGAACCGATAGTGCC 60.153 63.158 0.00 0.00 41.60 5.01
5085 8616 0.180406 ATGGGGTGAACCGATAGTGC 59.820 55.000 0.00 0.00 41.60 4.40
5086 8617 1.202651 GGATGGGGTGAACCGATAGTG 60.203 57.143 0.00 0.00 37.86 2.74
5087 8618 1.129058 GGATGGGGTGAACCGATAGT 58.871 55.000 0.00 0.00 37.86 2.12
5088 8619 0.396811 GGGATGGGGTGAACCGATAG 59.603 60.000 0.00 0.00 37.86 2.08
5089 8620 0.030501 AGGGATGGGGTGAACCGATA 60.031 55.000 0.00 0.00 37.86 2.92
5090 8621 1.307866 AGGGATGGGGTGAACCGAT 60.308 57.895 0.00 0.00 40.82 4.18
5091 8622 2.124085 AGGGATGGGGTGAACCGA 59.876 61.111 0.00 0.00 41.60 4.69
5092 8623 2.272146 CAGGGATGGGGTGAACCG 59.728 66.667 0.00 0.00 41.60 4.44
5093 8624 2.238701 ACCAGGGATGGGGTGAACC 61.239 63.158 0.00 0.00 35.67 3.62
5094 8625 3.508048 ACCAGGGATGGGGTGAAC 58.492 61.111 0.00 0.00 35.67 3.18
5099 8630 4.447342 GTGCCACCAGGGATGGGG 62.447 72.222 0.00 0.00 37.67 4.96
5100 8631 1.355718 ATAGTGCCACCAGGGATGGG 61.356 60.000 0.00 1.47 37.67 4.00
5101 8632 0.109342 GATAGTGCCACCAGGGATGG 59.891 60.000 0.00 0.00 37.67 3.51
5102 8633 0.250038 CGATAGTGCCACCAGGGATG 60.250 60.000 0.00 0.00 37.67 3.51
5103 8634 0.398522 TCGATAGTGCCACCAGGGAT 60.399 55.000 0.00 0.00 37.67 3.85
5104 8635 0.398522 ATCGATAGTGCCACCAGGGA 60.399 55.000 0.00 0.00 36.43 4.20
5105 8636 0.034059 GATCGATAGTGCCACCAGGG 59.966 60.000 0.00 0.00 37.20 4.45
5106 8637 1.043816 AGATCGATAGTGCCACCAGG 58.956 55.000 0.00 0.00 35.87 4.45
5107 8638 2.477825 CAAGATCGATAGTGCCACCAG 58.522 52.381 0.00 0.00 37.40 4.00
5108 8639 1.138859 CCAAGATCGATAGTGCCACCA 59.861 52.381 0.00 0.00 37.40 4.17
5109 8640 1.412710 TCCAAGATCGATAGTGCCACC 59.587 52.381 0.00 0.00 37.40 4.61
5110 8641 2.546795 CCTCCAAGATCGATAGTGCCAC 60.547 54.545 0.00 0.00 37.40 5.01
5111 8642 1.688735 CCTCCAAGATCGATAGTGCCA 59.311 52.381 0.00 0.00 37.40 4.92
5112 8643 1.689273 ACCTCCAAGATCGATAGTGCC 59.311 52.381 0.00 0.00 37.40 5.01
5113 8644 2.748605 CACCTCCAAGATCGATAGTGC 58.251 52.381 0.00 0.00 37.40 4.40
5114 8645 2.748605 GCACCTCCAAGATCGATAGTG 58.251 52.381 0.00 0.00 37.40 2.74
5115 8646 1.338337 CGCACCTCCAAGATCGATAGT 59.662 52.381 0.00 0.00 37.40 2.12
5116 8647 1.336332 CCGCACCTCCAAGATCGATAG 60.336 57.143 0.00 0.00 0.00 2.08
5117 8648 0.673985 CCGCACCTCCAAGATCGATA 59.326 55.000 0.00 0.00 0.00 2.92
5118 8649 1.443407 CCGCACCTCCAAGATCGAT 59.557 57.895 0.00 0.00 0.00 3.59
5119 8650 2.892640 CCGCACCTCCAAGATCGA 59.107 61.111 0.00 0.00 0.00 3.59
5120 8651 2.892425 GCCGCACCTCCAAGATCG 60.892 66.667 0.00 0.00 0.00 3.69
5121 8652 1.817099 CAGCCGCACCTCCAAGATC 60.817 63.158 0.00 0.00 0.00 2.75
5122 8653 1.630126 ATCAGCCGCACCTCCAAGAT 61.630 55.000 0.00 0.00 0.00 2.40
5123 8654 2.244117 GATCAGCCGCACCTCCAAGA 62.244 60.000 0.00 0.00 0.00 3.02
5124 8655 1.817099 GATCAGCCGCACCTCCAAG 60.817 63.158 0.00 0.00 0.00 3.61
5125 8656 2.268920 GATCAGCCGCACCTCCAA 59.731 61.111 0.00 0.00 0.00 3.53
5126 8657 3.785859 GGATCAGCCGCACCTCCA 61.786 66.667 0.00 0.00 0.00 3.86
5127 8658 4.554036 GGGATCAGCCGCACCTCC 62.554 72.222 0.00 0.00 37.63 4.30
5128 8659 4.899239 CGGGATCAGCCGCACCTC 62.899 72.222 0.00 0.00 37.63 3.85
5130 8661 4.778143 AACGGGATCAGCCGCACC 62.778 66.667 9.98 0.00 37.63 5.01
5131 8662 3.499737 CAACGGGATCAGCCGCAC 61.500 66.667 9.98 0.00 37.63 5.34
5132 8663 4.015406 ACAACGGGATCAGCCGCA 62.015 61.111 9.98 0.00 37.63 5.69
5133 8664 3.499737 CACAACGGGATCAGCCGC 61.500 66.667 9.98 0.00 37.63 6.53
5134 8665 1.671054 AACACAACGGGATCAGCCG 60.671 57.895 8.66 8.66 37.63 5.52
5135 8666 1.875963 CAACACAACGGGATCAGCC 59.124 57.895 0.00 0.00 0.00 4.85
5136 8667 1.210155 GCAACACAACGGGATCAGC 59.790 57.895 0.00 0.00 0.00 4.26
5137 8668 1.227999 ACGCAACACAACGGGATCAG 61.228 55.000 0.00 0.00 0.00 2.90
5138 8669 1.227704 ACGCAACACAACGGGATCA 60.228 52.632 0.00 0.00 0.00 2.92
5139 8670 1.206578 CACGCAACACAACGGGATC 59.793 57.895 0.00 0.00 33.57 3.36
5140 8671 1.525077 ACACGCAACACAACGGGAT 60.525 52.632 0.00 0.00 35.87 3.85
5141 8672 2.125065 ACACGCAACACAACGGGA 60.125 55.556 0.00 0.00 35.87 5.14
5142 8673 2.024022 CACACGCAACACAACGGG 59.976 61.111 0.00 0.00 39.03 5.28
5143 8674 2.024022 CCACACGCAACACAACGG 59.976 61.111 0.00 0.00 0.00 4.44
5144 8675 2.024022 CCCACACGCAACACAACG 59.976 61.111 0.00 0.00 0.00 4.10
5145 8676 1.355210 CTCCCACACGCAACACAAC 59.645 57.895 0.00 0.00 0.00 3.32
5146 8677 1.821759 CCTCCCACACGCAACACAA 60.822 57.895 0.00 0.00 0.00 3.33
5147 8678 2.203139 CCTCCCACACGCAACACA 60.203 61.111 0.00 0.00 0.00 3.72
5148 8679 2.978010 CCCTCCCACACGCAACAC 60.978 66.667 0.00 0.00 0.00 3.32
5149 8680 2.951475 GAACCCTCCCACACGCAACA 62.951 60.000 0.00 0.00 0.00 3.33
5150 8681 2.203294 AACCCTCCCACACGCAAC 60.203 61.111 0.00 0.00 0.00 4.17
5151 8682 2.112297 GAACCCTCCCACACGCAA 59.888 61.111 0.00 0.00 0.00 4.85
5152 8683 2.847234 AGAACCCTCCCACACGCA 60.847 61.111 0.00 0.00 0.00 5.24
5153 8684 2.047179 GAGAACCCTCCCACACGC 60.047 66.667 0.00 0.00 33.30 5.34
5154 8685 1.191535 TATGAGAACCCTCCCACACG 58.808 55.000 0.00 0.00 38.66 4.49
5155 8686 3.933861 AATATGAGAACCCTCCCACAC 57.066 47.619 0.00 0.00 38.66 3.82
5156 8687 4.111577 AGAAATATGAGAACCCTCCCACA 58.888 43.478 0.00 0.00 38.66 4.17
5157 8688 4.779993 AGAAATATGAGAACCCTCCCAC 57.220 45.455 0.00 0.00 38.66 4.61
5158 8689 5.796502 AAAGAAATATGAGAACCCTCCCA 57.203 39.130 0.00 0.00 38.66 4.37
5159 8690 6.126449 ACCTAAAGAAATATGAGAACCCTCCC 60.126 42.308 0.00 0.00 38.66 4.30
5160 8691 6.768381 CACCTAAAGAAATATGAGAACCCTCC 59.232 42.308 0.00 0.00 38.66 4.30
5161 8692 7.339482 ACACCTAAAGAAATATGAGAACCCTC 58.661 38.462 0.00 0.00 39.86 4.30
5162 8693 7.272144 ACACCTAAAGAAATATGAGAACCCT 57.728 36.000 0.00 0.00 0.00 4.34
5163 8694 7.939784 AACACCTAAAGAAATATGAGAACCC 57.060 36.000 0.00 0.00 0.00 4.11
5185 8716 3.955551 TCCCCAACCAAGACACTAAAAAC 59.044 43.478 0.00 0.00 0.00 2.43
5221 8752 4.902448 GGGGGACACTATTCTAACTCTGAT 59.098 45.833 0.00 0.00 0.00 2.90
5240 8771 1.426598 AGCATGAATAGGATGTGGGGG 59.573 52.381 0.00 0.00 0.00 5.40
5245 8776 2.374504 CTCCCCAGCATGAATAGGATGT 59.625 50.000 0.00 0.00 39.69 3.06
5248 8779 1.061424 TCCTCCCCAGCATGAATAGGA 60.061 52.381 0.00 0.00 39.69 2.94
5250 8781 2.038295 GTCTCCTCCCCAGCATGAATAG 59.962 54.545 0.00 0.00 39.69 1.73
5261 8792 1.268283 CCTCCAAGTGTCTCCTCCCC 61.268 65.000 0.00 0.00 0.00 4.81
5280 8811 1.376609 CCAAGTAGATGCGCCCCAAC 61.377 60.000 4.18 0.00 0.00 3.77
5284 8815 1.523938 GACCCAAGTAGATGCGCCC 60.524 63.158 4.18 0.00 0.00 6.13
5288 8819 1.555075 TGACTGGACCCAAGTAGATGC 59.445 52.381 0.00 0.00 0.00 3.91
5289 8820 4.194640 CAATGACTGGACCCAAGTAGATG 58.805 47.826 0.00 0.00 0.00 2.90
5299 8830 2.568623 AGACCAACAATGACTGGACC 57.431 50.000 11.87 4.85 36.49 4.46
5301 8832 3.882888 GTCAAAGACCAACAATGACTGGA 59.117 43.478 11.87 0.00 37.87 3.86
5302 8833 3.631686 TGTCAAAGACCAACAATGACTGG 59.368 43.478 5.88 4.93 40.70 4.00
5303 8834 4.261322 CCTGTCAAAGACCAACAATGACTG 60.261 45.833 5.88 5.25 40.70 3.51
5304 8835 3.885297 CCTGTCAAAGACCAACAATGACT 59.115 43.478 5.88 0.00 40.70 3.41
5305 8836 3.632145 ACCTGTCAAAGACCAACAATGAC 59.368 43.478 0.00 0.00 40.53 3.06
5306 8837 3.882888 GACCTGTCAAAGACCAACAATGA 59.117 43.478 0.00 0.00 0.00 2.57
5307 8838 3.885297 AGACCTGTCAAAGACCAACAATG 59.115 43.478 0.00 0.00 0.00 2.82
5308 8839 3.885297 CAGACCTGTCAAAGACCAACAAT 59.115 43.478 0.00 0.00 0.00 2.71
5326 8857 6.529829 CAGAGACAACTAGCAGATTTACAGAC 59.470 42.308 0.00 0.00 0.00 3.51
5332 8863 4.489810 CGTCAGAGACAACTAGCAGATTT 58.510 43.478 0.00 0.00 32.09 2.17
5333 8864 3.119316 CCGTCAGAGACAACTAGCAGATT 60.119 47.826 0.00 0.00 32.09 2.40
5335 8866 1.813178 CCGTCAGAGACAACTAGCAGA 59.187 52.381 0.00 0.00 32.09 4.26
5336 8867 1.813178 TCCGTCAGAGACAACTAGCAG 59.187 52.381 0.00 0.00 32.09 4.24
5338 8869 3.119459 TGAATCCGTCAGAGACAACTAGC 60.119 47.826 0.00 0.00 32.09 3.42
5339 8870 4.703645 TGAATCCGTCAGAGACAACTAG 57.296 45.455 0.00 0.00 32.09 2.57
5340 8871 4.462834 ACATGAATCCGTCAGAGACAACTA 59.537 41.667 0.00 0.00 40.43 2.24
5341 8872 3.259374 ACATGAATCCGTCAGAGACAACT 59.741 43.478 0.00 0.00 40.43 3.16
5364 8898 2.053865 CCATGCGCCCACCAAATCT 61.054 57.895 4.18 0.00 0.00 2.40
5366 8900 1.912763 AACCATGCGCCCACCAAAT 60.913 52.632 4.18 0.00 0.00 2.32
5371 8905 1.241315 ACTAACAACCATGCGCCCAC 61.241 55.000 4.18 0.00 0.00 4.61
5372 8906 1.074072 ACTAACAACCATGCGCCCA 59.926 52.632 4.18 0.00 0.00 5.36
5424 8960 5.591067 ACAACAAACGTCCCTGATAAAGAAA 59.409 36.000 0.00 0.00 0.00 2.52
5427 8963 5.432885 AACAACAAACGTCCCTGATAAAG 57.567 39.130 0.00 0.00 0.00 1.85
5430 8966 6.017770 CACTAAAACAACAAACGTCCCTGATA 60.018 38.462 0.00 0.00 0.00 2.15
5434 8970 3.181494 GCACTAAAACAACAAACGTCCCT 60.181 43.478 0.00 0.00 0.00 4.20
5436 8972 3.760537 TGCACTAAAACAACAAACGTCC 58.239 40.909 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.