Multiple sequence alignment - TraesCS4D01G195600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G195600 chr4D 100.000 4514 0 0 1 4514 339225295 339229808 0.000000e+00 8336.0
1 TraesCS4D01G195600 chr4D 96.078 204 8 0 1 204 104239600 104239397 2.600000e-87 333.0
2 TraesCS4D01G195600 chr4D 95.567 203 9 0 1 203 104250071 104249869 4.350000e-85 326.0
3 TraesCS4D01G195600 chr4B 92.864 3924 177 37 204 4077 418751233 418755103 0.000000e+00 5600.0
4 TraesCS4D01G195600 chr4B 90.753 292 15 2 4097 4386 418755163 418755444 3.300000e-101 379.0
5 TraesCS4D01G195600 chr4B 95.420 131 4 2 4384 4514 418755477 418755605 1.650000e-49 207.0
6 TraesCS4D01G195600 chr4A 93.922 2978 101 28 944 3889 132703443 132700514 0.000000e+00 4423.0
7 TraesCS4D01G195600 chr4A 92.053 302 11 9 4097 4386 132700108 132699808 3.250000e-111 412.0
8 TraesCS4D01G195600 chr4A 87.417 302 19 7 610 910 132703731 132703448 3.370000e-86 329.0
9 TraesCS4D01G195600 chr4A 93.617 141 6 3 3940 4077 132700308 132700168 1.650000e-49 207.0
10 TraesCS4D01G195600 chr4A 97.436 39 1 0 4387 4425 132699772 132699734 2.910000e-07 67.6
11 TraesCS4D01G195600 chr6D 96.078 204 8 0 1 204 422089517 422089314 2.600000e-87 333.0
12 TraesCS4D01G195600 chr6D 96.059 203 8 0 1 203 422166655 422166453 9.360000e-87 331.0
13 TraesCS4D01G195600 chr6D 92.683 41 2 1 1398 1438 368371959 368371920 1.750000e-04 58.4
14 TraesCS4D01G195600 chr7D 96.059 203 8 0 1 203 290838176 290838378 9.360000e-87 331.0
15 TraesCS4D01G195600 chr7D 95.050 202 9 1 3 203 244607872 244608073 2.620000e-82 316.0
16 TraesCS4D01G195600 chr2A 95.588 204 8 1 1 203 256134919 256134716 4.350000e-85 326.0
17 TraesCS4D01G195600 chr2A 90.667 75 7 0 1770 1844 38914722 38914648 2.870000e-17 100.0
18 TraesCS4D01G195600 chr1D 95.567 203 9 0 1 203 109079864 109079662 4.350000e-85 326.0
19 TraesCS4D01G195600 chr5D 92.273 220 15 2 1 218 517409834 517409615 1.220000e-80 311.0
20 TraesCS4D01G195600 chr2B 85.517 145 21 0 3061 3205 58844341 58844197 7.820000e-33 152.0
21 TraesCS4D01G195600 chr2B 89.024 82 8 1 1764 1844 58846010 58845929 2.870000e-17 100.0
22 TraesCS4D01G195600 chr2D 90.667 75 7 0 1770 1844 35685683 35685609 2.870000e-17 100.0
23 TraesCS4D01G195600 chr6B 92.683 41 2 1 1398 1438 553051071 553051110 1.750000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G195600 chr4D 339225295 339229808 4513 False 8336.00 8336 100.000000 1 4514 1 chr4D.!!$F1 4513
1 TraesCS4D01G195600 chr4B 418751233 418755605 4372 False 2062.00 5600 93.012333 204 4514 3 chr4B.!!$F1 4310
2 TraesCS4D01G195600 chr4A 132699734 132703731 3997 True 1087.72 4423 92.889000 610 4425 5 chr4A.!!$R1 3815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.365523 CAACGCACACGATTAGTCCG 59.634 55.0 0.0 0.0 43.93 4.79 F
342 344 0.539986 GCCTTATGACCTTCCCGTGA 59.460 55.0 0.0 0.0 0.00 4.35 F
1866 1894 0.320771 TGGCTCTTTGCTTCTCGGTC 60.321 55.0 0.0 0.0 42.39 4.79 F
2233 2261 0.395311 CATCCACTGCATCCTGGCTT 60.395 55.0 0.0 0.0 34.04 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 1796 0.636647 TCCTGTGGCTGATCCTCCTA 59.363 55.000 0.00 0.0 35.26 2.94 R
2233 2261 1.475034 GCGAGAACCCCTATCATTGCA 60.475 52.381 0.00 0.0 0.00 4.08 R
3133 3184 1.226101 GACATGCGTGCCAATGTCG 60.226 57.895 5.64 0.0 34.85 4.35 R
4179 4443 0.038166 TTCAGAGGGGGTGAATGTGC 59.962 55.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.124347 CTCTTGATAGTACGATGTCTCCTAC 57.876 44.000 0.00 0.00 0.00 3.18
25 26 5.695363 TCTTGATAGTACGATGTCTCCTACG 59.305 44.000 0.00 0.00 0.00 3.51
26 27 5.205759 TGATAGTACGATGTCTCCTACGA 57.794 43.478 0.00 0.00 0.00 3.43
27 28 4.987285 TGATAGTACGATGTCTCCTACGAC 59.013 45.833 0.00 0.00 34.52 4.34
28 29 3.540314 AGTACGATGTCTCCTACGACT 57.460 47.619 0.00 0.00 35.00 4.18
29 30 3.456280 AGTACGATGTCTCCTACGACTC 58.544 50.000 0.00 0.00 35.00 3.36
30 31 2.398252 ACGATGTCTCCTACGACTCA 57.602 50.000 0.00 0.00 35.00 3.41
31 32 2.708051 ACGATGTCTCCTACGACTCAA 58.292 47.619 0.00 0.00 35.00 3.02
32 33 2.678836 ACGATGTCTCCTACGACTCAAG 59.321 50.000 0.00 0.00 35.00 3.02
33 34 2.678836 CGATGTCTCCTACGACTCAAGT 59.321 50.000 0.00 0.00 35.00 3.16
34 35 3.242478 CGATGTCTCCTACGACTCAAGTC 60.242 52.174 0.00 0.00 41.47 3.01
35 36 2.434428 TGTCTCCTACGACTCAAGTCC 58.566 52.381 4.63 0.00 41.86 3.85
36 37 2.224695 TGTCTCCTACGACTCAAGTCCA 60.225 50.000 4.63 0.00 41.86 4.02
37 38 2.162008 GTCTCCTACGACTCAAGTCCAC 59.838 54.545 4.63 0.00 41.86 4.02
38 39 1.473278 CTCCTACGACTCAAGTCCACC 59.527 57.143 4.63 0.00 41.86 4.61
39 40 1.202964 TCCTACGACTCAAGTCCACCA 60.203 52.381 4.63 0.00 41.86 4.17
40 41 1.616865 CCTACGACTCAAGTCCACCAA 59.383 52.381 4.63 0.00 41.86 3.67
41 42 2.036733 CCTACGACTCAAGTCCACCAAA 59.963 50.000 4.63 0.00 41.86 3.28
42 43 1.949465 ACGACTCAAGTCCACCAAAC 58.051 50.000 4.63 0.00 41.86 2.93
43 44 1.226746 CGACTCAAGTCCACCAAACC 58.773 55.000 4.63 0.00 41.86 3.27
44 45 1.226746 GACTCAAGTCCACCAAACCG 58.773 55.000 0.00 0.00 39.07 4.44
45 46 0.834612 ACTCAAGTCCACCAAACCGA 59.165 50.000 0.00 0.00 0.00 4.69
46 47 1.210967 ACTCAAGTCCACCAAACCGAA 59.789 47.619 0.00 0.00 0.00 4.30
47 48 2.294074 CTCAAGTCCACCAAACCGAAA 58.706 47.619 0.00 0.00 0.00 3.46
48 49 2.884639 CTCAAGTCCACCAAACCGAAAT 59.115 45.455 0.00 0.00 0.00 2.17
49 50 2.621055 TCAAGTCCACCAAACCGAAATG 59.379 45.455 0.00 0.00 0.00 2.32
50 51 2.621055 CAAGTCCACCAAACCGAAATGA 59.379 45.455 0.00 0.00 0.00 2.57
51 52 2.938838 AGTCCACCAAACCGAAATGAA 58.061 42.857 0.00 0.00 0.00 2.57
52 53 3.292460 AGTCCACCAAACCGAAATGAAA 58.708 40.909 0.00 0.00 0.00 2.69
53 54 3.317993 AGTCCACCAAACCGAAATGAAAG 59.682 43.478 0.00 0.00 0.00 2.62
54 55 3.316868 GTCCACCAAACCGAAATGAAAGA 59.683 43.478 0.00 0.00 0.00 2.52
55 56 3.568007 TCCACCAAACCGAAATGAAAGAG 59.432 43.478 0.00 0.00 0.00 2.85
56 57 3.568007 CCACCAAACCGAAATGAAAGAGA 59.432 43.478 0.00 0.00 0.00 3.10
57 58 4.537015 CACCAAACCGAAATGAAAGAGAC 58.463 43.478 0.00 0.00 0.00 3.36
58 59 4.275936 CACCAAACCGAAATGAAAGAGACT 59.724 41.667 0.00 0.00 0.00 3.24
59 60 5.468746 CACCAAACCGAAATGAAAGAGACTA 59.531 40.000 0.00 0.00 0.00 2.59
60 61 5.469084 ACCAAACCGAAATGAAAGAGACTAC 59.531 40.000 0.00 0.00 0.00 2.73
61 62 5.468746 CCAAACCGAAATGAAAGAGACTACA 59.531 40.000 0.00 0.00 0.00 2.74
62 63 6.363473 CAAACCGAAATGAAAGAGACTACAC 58.637 40.000 0.00 0.00 0.00 2.90
63 64 4.566987 ACCGAAATGAAAGAGACTACACC 58.433 43.478 0.00 0.00 0.00 4.16
64 65 3.612860 CCGAAATGAAAGAGACTACACCG 59.387 47.826 0.00 0.00 0.00 4.94
65 66 4.235360 CGAAATGAAAGAGACTACACCGT 58.765 43.478 0.00 0.00 0.00 4.83
66 67 4.323868 CGAAATGAAAGAGACTACACCGTC 59.676 45.833 0.00 0.00 0.00 4.79
67 68 5.470047 AAATGAAAGAGACTACACCGTCT 57.530 39.130 0.00 0.00 46.39 4.18
68 69 5.470047 AATGAAAGAGACTACACCGTCTT 57.530 39.130 0.00 0.00 43.91 3.01
69 70 4.500603 TGAAAGAGACTACACCGTCTTC 57.499 45.455 0.00 0.00 43.91 2.87
70 71 3.887110 TGAAAGAGACTACACCGTCTTCA 59.113 43.478 0.00 0.00 43.91 3.02
71 72 3.919223 AAGAGACTACACCGTCTTCAC 57.081 47.619 0.00 0.00 43.91 3.18
72 73 2.860009 AGAGACTACACCGTCTTCACA 58.140 47.619 0.00 0.00 43.91 3.58
73 74 3.422796 AGAGACTACACCGTCTTCACAT 58.577 45.455 0.00 0.00 43.91 3.21
74 75 4.586884 AGAGACTACACCGTCTTCACATA 58.413 43.478 0.00 0.00 43.91 2.29
75 76 5.008331 AGAGACTACACCGTCTTCACATAA 58.992 41.667 0.00 0.00 43.91 1.90
76 77 5.475909 AGAGACTACACCGTCTTCACATAAA 59.524 40.000 0.00 0.00 43.91 1.40
77 78 5.710984 AGACTACACCGTCTTCACATAAAG 58.289 41.667 0.00 0.00 41.27 1.85
78 79 4.243270 ACTACACCGTCTTCACATAAAGC 58.757 43.478 0.00 0.00 0.00 3.51
79 80 3.402628 ACACCGTCTTCACATAAAGCT 57.597 42.857 0.00 0.00 0.00 3.74
80 81 3.326747 ACACCGTCTTCACATAAAGCTC 58.673 45.455 0.00 0.00 0.00 4.09
81 82 2.673368 CACCGTCTTCACATAAAGCTCC 59.327 50.000 0.00 0.00 0.00 4.70
82 83 1.927174 CCGTCTTCACATAAAGCTCCG 59.073 52.381 0.00 0.00 0.00 4.63
83 84 2.416836 CCGTCTTCACATAAAGCTCCGA 60.417 50.000 0.00 0.00 0.00 4.55
84 85 2.854777 CGTCTTCACATAAAGCTCCGAG 59.145 50.000 0.00 0.00 0.00 4.63
85 86 3.190874 GTCTTCACATAAAGCTCCGAGG 58.809 50.000 0.00 0.00 0.00 4.63
86 87 3.096852 TCTTCACATAAAGCTCCGAGGA 58.903 45.455 0.00 0.00 0.00 3.71
87 88 3.131223 TCTTCACATAAAGCTCCGAGGAG 59.869 47.826 14.53 14.53 44.56 3.69
88 89 2.735151 TCACATAAAGCTCCGAGGAGA 58.265 47.619 22.32 2.06 44.53 3.71
89 90 3.096852 TCACATAAAGCTCCGAGGAGAA 58.903 45.455 22.32 5.06 44.53 2.87
90 91 3.513912 TCACATAAAGCTCCGAGGAGAAA 59.486 43.478 22.32 4.73 44.53 2.52
91 92 3.868077 CACATAAAGCTCCGAGGAGAAAG 59.132 47.826 22.32 7.83 44.53 2.62
92 93 3.769844 ACATAAAGCTCCGAGGAGAAAGA 59.230 43.478 22.32 5.19 44.53 2.52
93 94 4.223032 ACATAAAGCTCCGAGGAGAAAGAA 59.777 41.667 22.32 4.06 44.53 2.52
94 95 3.990959 AAAGCTCCGAGGAGAAAGAAT 57.009 42.857 22.32 0.00 44.53 2.40
95 96 3.535280 AAGCTCCGAGGAGAAAGAATC 57.465 47.619 22.32 3.23 44.53 2.52
96 97 1.407258 AGCTCCGAGGAGAAAGAATCG 59.593 52.381 22.32 0.00 44.53 3.34
97 98 1.135333 GCTCCGAGGAGAAAGAATCGT 59.865 52.381 22.32 0.00 44.53 3.73
98 99 2.796735 GCTCCGAGGAGAAAGAATCGTC 60.797 54.545 22.32 0.00 44.53 4.20
99 100 2.685897 CTCCGAGGAGAAAGAATCGTCT 59.314 50.000 13.69 0.00 44.53 4.18
100 101 2.683867 TCCGAGGAGAAAGAATCGTCTC 59.316 50.000 8.03 8.03 39.70 3.36
101 102 2.539953 CCGAGGAGAAAGAATCGTCTCG 60.540 54.545 9.73 12.81 45.81 4.04
102 103 2.096174 CGAGGAGAAAGAATCGTCTCGT 59.904 50.000 10.47 10.47 43.62 4.18
103 104 3.430931 GAGGAGAAAGAATCGTCTCGTG 58.569 50.000 13.97 0.00 41.07 4.35
104 105 1.921230 GGAGAAAGAATCGTCTCGTGC 59.079 52.381 9.73 0.00 41.07 5.34
105 106 1.921230 GAGAAAGAATCGTCTCGTGCC 59.079 52.381 2.14 0.00 30.70 5.01
106 107 1.272490 AGAAAGAATCGTCTCGTGCCA 59.728 47.619 0.00 0.00 30.70 4.92
107 108 2.066262 GAAAGAATCGTCTCGTGCCAA 58.934 47.619 0.00 0.00 30.70 4.52
108 109 2.163818 AAGAATCGTCTCGTGCCAAA 57.836 45.000 0.00 0.00 30.70 3.28
109 110 1.714794 AGAATCGTCTCGTGCCAAAG 58.285 50.000 0.00 0.00 0.00 2.77
110 111 1.272490 AGAATCGTCTCGTGCCAAAGA 59.728 47.619 0.00 0.00 0.00 2.52
111 112 2.066262 GAATCGTCTCGTGCCAAAGAA 58.934 47.619 0.00 0.00 0.00 2.52
112 113 2.386661 ATCGTCTCGTGCCAAAGAAT 57.613 45.000 0.00 0.00 0.00 2.40
113 114 1.428448 TCGTCTCGTGCCAAAGAATG 58.572 50.000 0.00 0.00 0.00 2.67
114 115 1.000394 TCGTCTCGTGCCAAAGAATGA 60.000 47.619 0.00 0.00 0.00 2.57
115 116 1.798223 CGTCTCGTGCCAAAGAATGAA 59.202 47.619 0.00 0.00 0.00 2.57
116 117 2.416547 CGTCTCGTGCCAAAGAATGAAT 59.583 45.455 0.00 0.00 0.00 2.57
117 118 3.484229 CGTCTCGTGCCAAAGAATGAATC 60.484 47.826 0.00 0.00 0.00 2.52
118 119 3.686726 GTCTCGTGCCAAAGAATGAATCT 59.313 43.478 0.00 0.00 41.32 2.40
119 120 3.935203 TCTCGTGCCAAAGAATGAATCTC 59.065 43.478 0.00 0.00 37.42 2.75
120 121 3.937706 CTCGTGCCAAAGAATGAATCTCT 59.062 43.478 0.00 0.00 37.42 3.10
121 122 3.686241 TCGTGCCAAAGAATGAATCTCTG 59.314 43.478 0.00 0.00 37.42 3.35
122 123 3.686241 CGTGCCAAAGAATGAATCTCTGA 59.314 43.478 0.00 0.00 37.42 3.27
123 124 4.154737 CGTGCCAAAGAATGAATCTCTGAA 59.845 41.667 0.00 0.00 37.42 3.02
124 125 5.335113 CGTGCCAAAGAATGAATCTCTGAAA 60.335 40.000 0.00 0.00 37.42 2.69
125 126 6.624423 CGTGCCAAAGAATGAATCTCTGAAAT 60.624 38.462 0.00 0.00 37.42 2.17
126 127 7.414429 CGTGCCAAAGAATGAATCTCTGAAATA 60.414 37.037 0.00 0.00 37.42 1.40
127 128 7.699812 GTGCCAAAGAATGAATCTCTGAAATAC 59.300 37.037 0.00 0.00 37.42 1.89
128 129 7.613022 TGCCAAAGAATGAATCTCTGAAATACT 59.387 33.333 0.00 0.00 37.42 2.12
129 130 8.127954 GCCAAAGAATGAATCTCTGAAATACTC 58.872 37.037 0.00 0.00 37.42 2.59
130 131 9.170734 CCAAAGAATGAATCTCTGAAATACTCA 57.829 33.333 0.00 0.00 37.42 3.41
133 134 8.417780 AGAATGAATCTCTGAAATACTCAACG 57.582 34.615 0.00 0.00 30.46 4.10
134 135 6.595772 ATGAATCTCTGAAATACTCAACGC 57.404 37.500 0.00 0.00 32.17 4.84
135 136 5.478407 TGAATCTCTGAAATACTCAACGCA 58.522 37.500 0.00 0.00 32.17 5.24
136 137 5.348724 TGAATCTCTGAAATACTCAACGCAC 59.651 40.000 0.00 0.00 32.17 5.34
137 138 4.251543 TCTCTGAAATACTCAACGCACA 57.748 40.909 0.00 0.00 32.17 4.57
138 139 3.987868 TCTCTGAAATACTCAACGCACAC 59.012 43.478 0.00 0.00 32.17 3.82
140 141 2.729360 CTGAAATACTCAACGCACACGA 59.271 45.455 0.00 0.00 44.16 4.35
141 142 3.322369 TGAAATACTCAACGCACACGAT 58.678 40.909 0.00 0.00 43.93 3.73
142 143 3.743911 TGAAATACTCAACGCACACGATT 59.256 39.130 0.00 0.00 43.93 3.34
143 144 4.924462 TGAAATACTCAACGCACACGATTA 59.076 37.500 0.00 0.00 43.93 1.75
144 145 5.061684 TGAAATACTCAACGCACACGATTAG 59.938 40.000 0.00 0.00 43.93 1.73
145 146 2.433868 ACTCAACGCACACGATTAGT 57.566 45.000 0.00 0.00 43.93 2.24
146 147 2.325761 ACTCAACGCACACGATTAGTC 58.674 47.619 0.00 0.00 43.93 2.59
147 148 1.654105 CTCAACGCACACGATTAGTCC 59.346 52.381 0.00 0.00 43.93 3.85
148 149 0.365523 CAACGCACACGATTAGTCCG 59.634 55.000 0.00 0.00 43.93 4.79
149 150 1.349259 AACGCACACGATTAGTCCGC 61.349 55.000 0.00 0.00 43.93 5.54
150 151 1.803922 CGCACACGATTAGTCCGCA 60.804 57.895 0.00 0.00 43.93 5.69
151 152 1.348538 CGCACACGATTAGTCCGCAA 61.349 55.000 0.00 0.00 43.93 4.85
152 153 0.793861 GCACACGATTAGTCCGCAAA 59.206 50.000 0.00 0.00 0.00 3.68
153 154 1.195900 GCACACGATTAGTCCGCAAAA 59.804 47.619 0.00 0.00 0.00 2.44
154 155 2.724839 GCACACGATTAGTCCGCAAAAG 60.725 50.000 0.00 0.00 0.00 2.27
155 156 1.463444 ACACGATTAGTCCGCAAAAGC 59.537 47.619 0.00 0.00 0.00 3.51
156 157 1.463056 CACGATTAGTCCGCAAAAGCA 59.537 47.619 0.00 0.00 0.00 3.91
157 158 2.095853 CACGATTAGTCCGCAAAAGCAT 59.904 45.455 0.00 0.00 0.00 3.79
158 159 2.747446 ACGATTAGTCCGCAAAAGCATT 59.253 40.909 0.00 0.00 0.00 3.56
159 160 3.100817 CGATTAGTCCGCAAAAGCATTG 58.899 45.455 0.00 0.00 0.00 2.82
160 161 3.426159 CGATTAGTCCGCAAAAGCATTGT 60.426 43.478 4.47 0.00 0.00 2.71
161 162 3.552604 TTAGTCCGCAAAAGCATTGTC 57.447 42.857 4.47 0.00 0.00 3.18
162 163 1.317613 AGTCCGCAAAAGCATTGTCA 58.682 45.000 4.47 0.00 0.00 3.58
163 164 1.888512 AGTCCGCAAAAGCATTGTCAT 59.111 42.857 4.47 0.00 0.00 3.06
164 165 2.095059 AGTCCGCAAAAGCATTGTCATC 60.095 45.455 4.47 0.00 0.00 2.92
165 166 1.885233 TCCGCAAAAGCATTGTCATCA 59.115 42.857 4.47 0.00 0.00 3.07
166 167 2.295629 TCCGCAAAAGCATTGTCATCAA 59.704 40.909 4.47 0.00 37.98 2.57
167 168 3.056678 TCCGCAAAAGCATTGTCATCAAT 60.057 39.130 4.47 0.00 44.02 2.57
168 169 3.305094 CCGCAAAAGCATTGTCATCAATC 59.695 43.478 4.47 0.00 41.66 2.67
169 170 3.921630 CGCAAAAGCATTGTCATCAATCA 59.078 39.130 4.47 0.00 41.66 2.57
170 171 4.201551 CGCAAAAGCATTGTCATCAATCAC 60.202 41.667 4.47 0.00 41.66 3.06
171 172 4.092383 GCAAAAGCATTGTCATCAATCACC 59.908 41.667 4.47 0.00 41.66 4.02
172 173 5.231702 CAAAAGCATTGTCATCAATCACCA 58.768 37.500 0.00 0.00 41.66 4.17
173 174 5.471556 AAAGCATTGTCATCAATCACCAA 57.528 34.783 0.00 0.00 41.66 3.67
174 175 5.471556 AAGCATTGTCATCAATCACCAAA 57.528 34.783 0.00 0.00 41.66 3.28
175 176 5.471556 AGCATTGTCATCAATCACCAAAA 57.528 34.783 0.00 0.00 41.66 2.44
176 177 5.232463 AGCATTGTCATCAATCACCAAAAC 58.768 37.500 0.00 0.00 41.66 2.43
177 178 5.011329 AGCATTGTCATCAATCACCAAAACT 59.989 36.000 0.00 0.00 41.66 2.66
178 179 6.209192 AGCATTGTCATCAATCACCAAAACTA 59.791 34.615 0.00 0.00 41.66 2.24
179 180 6.308766 GCATTGTCATCAATCACCAAAACTAC 59.691 38.462 0.00 0.00 41.66 2.73
180 181 5.957842 TGTCATCAATCACCAAAACTACC 57.042 39.130 0.00 0.00 0.00 3.18
181 182 5.630121 TGTCATCAATCACCAAAACTACCT 58.370 37.500 0.00 0.00 0.00 3.08
182 183 6.774673 TGTCATCAATCACCAAAACTACCTA 58.225 36.000 0.00 0.00 0.00 3.08
183 184 6.878923 TGTCATCAATCACCAAAACTACCTAG 59.121 38.462 0.00 0.00 0.00 3.02
184 185 7.103641 GTCATCAATCACCAAAACTACCTAGA 58.896 38.462 0.00 0.00 0.00 2.43
185 186 7.278868 GTCATCAATCACCAAAACTACCTAGAG 59.721 40.741 0.00 0.00 0.00 2.43
186 187 6.928348 TCAATCACCAAAACTACCTAGAGA 57.072 37.500 0.00 0.00 0.00 3.10
187 188 6.936279 TCAATCACCAAAACTACCTAGAGAG 58.064 40.000 0.00 0.00 0.00 3.20
188 189 6.724441 TCAATCACCAAAACTACCTAGAGAGA 59.276 38.462 0.00 0.00 0.00 3.10
189 190 6.783708 ATCACCAAAACTACCTAGAGAGAG 57.216 41.667 0.00 0.00 0.00 3.20
190 191 5.888901 TCACCAAAACTACCTAGAGAGAGA 58.111 41.667 0.00 0.00 0.00 3.10
191 192 6.494952 TCACCAAAACTACCTAGAGAGAGAT 58.505 40.000 0.00 0.00 0.00 2.75
192 193 7.640313 TCACCAAAACTACCTAGAGAGAGATA 58.360 38.462 0.00 0.00 0.00 1.98
193 194 8.282982 TCACCAAAACTACCTAGAGAGAGATAT 58.717 37.037 0.00 0.00 0.00 1.63
194 195 8.356657 CACCAAAACTACCTAGAGAGAGATATG 58.643 40.741 0.00 0.00 0.00 1.78
195 196 7.014808 ACCAAAACTACCTAGAGAGAGATATGC 59.985 40.741 0.00 0.00 0.00 3.14
196 197 7.375053 CAAAACTACCTAGAGAGAGATATGCC 58.625 42.308 0.00 0.00 0.00 4.40
197 198 5.187621 ACTACCTAGAGAGAGATATGCCC 57.812 47.826 0.00 0.00 0.00 5.36
198 199 4.855599 ACTACCTAGAGAGAGATATGCCCT 59.144 45.833 0.00 0.00 0.00 5.19
199 200 6.033348 ACTACCTAGAGAGAGATATGCCCTA 58.967 44.000 0.00 0.00 0.00 3.53
200 201 5.869540 ACCTAGAGAGAGATATGCCCTAA 57.130 43.478 0.00 0.00 0.00 2.69
201 202 5.576128 ACCTAGAGAGAGATATGCCCTAAC 58.424 45.833 0.00 0.00 0.00 2.34
202 203 5.075205 ACCTAGAGAGAGATATGCCCTAACA 59.925 44.000 0.00 0.00 0.00 2.41
211 212 2.489938 ATGCCCTAACACACGTGAAT 57.510 45.000 25.01 10.06 0.00 2.57
214 215 2.147958 GCCCTAACACACGTGAATTGA 58.852 47.619 25.01 2.12 0.00 2.57
243 244 1.299620 GGCGGCAATGCATCACATC 60.300 57.895 7.79 0.00 38.34 3.06
257 259 3.469008 TCACATCTCCGTTTGTGTTCT 57.531 42.857 3.30 0.00 42.95 3.01
260 262 1.136252 CATCTCCGTTTGTGTTCTGCG 60.136 52.381 0.00 0.00 0.00 5.18
265 267 0.927537 CGTTTGTGTTCTGCGACAGA 59.072 50.000 5.59 5.59 38.87 3.41
294 296 2.361104 GGATTGCCACGGAAGCCA 60.361 61.111 0.00 0.00 0.00 4.75
317 319 5.827568 AAAAATGTGCAGCTTATCAAACG 57.172 34.783 0.00 0.00 0.00 3.60
323 325 1.529826 GCAGCTTATCAAACGCCTTCG 60.530 52.381 0.00 0.00 42.43 3.79
324 326 0.727398 AGCTTATCAAACGCCTTCGC 59.273 50.000 0.00 0.00 39.84 4.70
329 331 2.038387 ATCAAACGCCTTCGCCTTAT 57.962 45.000 0.00 0.00 39.84 1.73
341 343 0.810031 CGCCTTATGACCTTCCCGTG 60.810 60.000 0.00 0.00 0.00 4.94
342 344 0.539986 GCCTTATGACCTTCCCGTGA 59.460 55.000 0.00 0.00 0.00 4.35
343 345 1.065709 GCCTTATGACCTTCCCGTGAA 60.066 52.381 0.00 0.00 0.00 3.18
436 446 5.354792 CCCAAACATTTAGATTTTGCCCATG 59.645 40.000 0.00 0.00 0.00 3.66
476 486 0.969149 AGCAGTTGACACGAGGATGA 59.031 50.000 0.00 0.00 0.00 2.92
480 490 3.130633 CAGTTGACACGAGGATGACAAA 58.869 45.455 0.00 0.00 36.31 2.83
485 495 6.485313 AGTTGACACGAGGATGACAAATTTAA 59.515 34.615 0.00 0.00 36.31 1.52
552 564 1.847890 CGTGGGCAAAATCCGAACGT 61.848 55.000 0.00 0.00 34.31 3.99
562 574 2.412112 CCGAACGTCCGGGATCTC 59.588 66.667 4.80 0.00 45.43 2.75
566 578 0.815734 GAACGTCCGGGATCTCTTCA 59.184 55.000 0.00 0.00 0.00 3.02
567 579 1.203994 GAACGTCCGGGATCTCTTCAA 59.796 52.381 0.00 0.00 0.00 2.69
741 755 3.071602 CCAACTCCATAGTCCATACCCAG 59.928 52.174 0.00 0.00 33.75 4.45
782 796 2.939353 CCTTCCCCTTCCCCCGTT 60.939 66.667 0.00 0.00 0.00 4.44
930 954 1.215647 GGACGCACAAGATCCTCGT 59.784 57.895 0.00 0.00 35.98 4.18
933 957 1.874019 CGCACAAGATCCTCGTCGG 60.874 63.158 0.00 0.00 0.00 4.79
1528 1555 2.731572 CAAAGATTGGACCTCCATGCT 58.268 47.619 0.00 0.00 46.97 3.79
1713 1741 7.862372 TGAGTGCATGTTGTATTTTCTTCTTTC 59.138 33.333 0.00 0.00 0.00 2.62
1720 1748 6.978080 TGTTGTATTTTCTTCTTTCTTGTGGC 59.022 34.615 0.00 0.00 0.00 5.01
1747 1775 2.489938 TTGATGCTAAGAAAGGCGGT 57.510 45.000 0.00 0.00 0.00 5.68
1768 1796 5.277779 CGGTGTCTTGTGTGAATGTAATTGT 60.278 40.000 0.00 0.00 36.07 2.71
1866 1894 0.320771 TGGCTCTTTGCTTCTCGGTC 60.321 55.000 0.00 0.00 42.39 4.79
1891 1919 6.806739 CGATTCATGCATGCATAATTCTTCAT 59.193 34.615 31.73 8.01 34.91 2.57
1913 1941 1.443702 GGCGGCGTTTTGGTGAATC 60.444 57.895 9.37 0.00 0.00 2.52
2051 2079 2.443255 CCCCTTATACTTGGTGAGGCAT 59.557 50.000 0.00 0.00 0.00 4.40
2066 2094 3.379372 TGAGGCATAAAGCTGCTTGATTC 59.621 43.478 16.73 8.28 44.79 2.52
2122 2150 9.672086 TTTTCTAACATGGTAAATTCTTGTTCG 57.328 29.630 0.00 0.00 35.26 3.95
2182 2210 2.459060 TCAACCCGAACAGCGATTTA 57.541 45.000 0.00 0.00 44.57 1.40
2233 2261 0.395311 CATCCACTGCATCCTGGCTT 60.395 55.000 0.00 0.00 34.04 4.35
2242 2270 1.958579 GCATCCTGGCTTGCAATGATA 59.041 47.619 14.22 0.00 38.72 2.15
2251 2279 2.620585 GCTTGCAATGATAGGGGTTCTC 59.379 50.000 0.00 0.00 0.00 2.87
2284 2312 2.806945 TTGTGATGGGGCCTCTTAAG 57.193 50.000 3.07 0.00 0.00 1.85
2303 2331 7.275183 TCTTAAGATGCTAAAGCTCTATGCAA 58.725 34.615 0.00 0.00 45.94 4.08
2339 2367 3.015327 AGAGCTTCATGCCTTTCATCAC 58.985 45.455 0.00 0.00 44.23 3.06
2341 2369 3.362706 AGCTTCATGCCTTTCATCACAT 58.637 40.909 0.00 0.00 44.23 3.21
2389 2417 5.537300 TGGATAAGCCATCAAGAGAGTAC 57.463 43.478 0.00 0.00 43.33 2.73
2390 2418 4.962362 TGGATAAGCCATCAAGAGAGTACA 59.038 41.667 0.00 0.00 43.33 2.90
2391 2419 5.163405 TGGATAAGCCATCAAGAGAGTACAC 60.163 44.000 0.00 0.00 43.33 2.90
2392 2420 5.069781 GGATAAGCCATCAAGAGAGTACACT 59.930 44.000 0.00 0.00 35.11 3.55
2393 2421 3.883830 AGCCATCAAGAGAGTACACTG 57.116 47.619 0.00 0.00 0.00 3.66
2394 2422 3.169099 AGCCATCAAGAGAGTACACTGT 58.831 45.455 0.00 0.00 0.00 3.55
2395 2423 3.056250 AGCCATCAAGAGAGTACACTGTG 60.056 47.826 6.19 6.19 0.00 3.66
2396 2424 3.056536 GCCATCAAGAGAGTACACTGTGA 60.057 47.826 15.86 1.86 0.00 3.58
2397 2425 4.561530 GCCATCAAGAGAGTACACTGTGAA 60.562 45.833 15.86 0.00 0.00 3.18
2398 2426 5.167121 CCATCAAGAGAGTACACTGTGAAG 58.833 45.833 15.86 0.00 0.00 3.02
2399 2427 5.047731 CCATCAAGAGAGTACACTGTGAAGA 60.048 44.000 15.86 0.00 0.00 2.87
2400 2428 6.450545 CATCAAGAGAGTACACTGTGAAGAA 58.549 40.000 15.86 0.00 0.00 2.52
2401 2429 5.833082 TCAAGAGAGTACACTGTGAAGAAC 58.167 41.667 15.86 6.97 0.00 3.01
2402 2430 5.594725 TCAAGAGAGTACACTGTGAAGAACT 59.405 40.000 15.86 11.43 0.00 3.01
2403 2431 5.699097 AGAGAGTACACTGTGAAGAACTC 57.301 43.478 15.86 18.31 34.85 3.01
2404 2432 4.521256 AGAGAGTACACTGTGAAGAACTCC 59.479 45.833 15.86 13.23 35.13 3.85
2405 2433 4.215908 AGAGTACACTGTGAAGAACTCCA 58.784 43.478 15.86 0.00 35.13 3.86
2472 2501 5.119931 TGGATTTTGTCACATACTTGCAC 57.880 39.130 0.00 0.00 0.00 4.57
2546 2575 6.703319 TCATGGTTGAATCAGATTTGCAATT 58.297 32.000 0.00 0.00 0.00 2.32
2559 2588 8.255206 TCAGATTTGCAATTAATCAATGCTTCT 58.745 29.630 11.24 8.11 35.04 2.85
2563 2592 6.283544 TGCAATTAATCAATGCTTCTGGAA 57.716 33.333 10.98 0.00 0.00 3.53
2579 2608 6.707440 TTCTGGAAAACTGCTTAATGTTCA 57.293 33.333 0.00 0.00 0.00 3.18
2594 2624 7.612668 TTAATGTTCAAAATCAATGGCATGG 57.387 32.000 0.00 0.00 0.00 3.66
2716 2751 9.906660 CTTAAAGAAAATGGCAAACATAGTACA 57.093 29.630 0.00 0.00 39.40 2.90
2717 2752 9.906660 TTAAAGAAAATGGCAAACATAGTACAG 57.093 29.630 0.00 0.00 39.40 2.74
2718 2753 7.524717 AAGAAAATGGCAAACATAGTACAGT 57.475 32.000 0.00 0.00 39.40 3.55
2719 2754 8.630054 AAGAAAATGGCAAACATAGTACAGTA 57.370 30.769 0.00 0.00 39.40 2.74
2720 2755 8.807948 AGAAAATGGCAAACATAGTACAGTAT 57.192 30.769 0.00 0.00 39.40 2.12
2721 2756 9.899661 AGAAAATGGCAAACATAGTACAGTATA 57.100 29.630 0.00 0.00 39.40 1.47
2813 2849 8.703604 TTACATTTATTTCTGACTTCTCCTCG 57.296 34.615 0.00 0.00 0.00 4.63
2833 2869 5.701290 CCTCGAAATTGTTAGTTCTTCTGGT 59.299 40.000 0.00 0.00 0.00 4.00
2834 2870 6.128526 CCTCGAAATTGTTAGTTCTTCTGGTC 60.129 42.308 0.00 0.00 0.00 4.02
2835 2871 6.522054 TCGAAATTGTTAGTTCTTCTGGTCT 58.478 36.000 0.00 0.00 0.00 3.85
2836 2872 6.990349 TCGAAATTGTTAGTTCTTCTGGTCTT 59.010 34.615 0.00 0.00 0.00 3.01
2837 2873 7.170998 TCGAAATTGTTAGTTCTTCTGGTCTTC 59.829 37.037 0.00 0.00 0.00 2.87
2838 2874 7.171678 CGAAATTGTTAGTTCTTCTGGTCTTCT 59.828 37.037 0.00 0.00 0.00 2.85
2839 2875 7.736447 AATTGTTAGTTCTTCTGGTCTTCTG 57.264 36.000 0.00 0.00 0.00 3.02
2840 2876 5.871396 TGTTAGTTCTTCTGGTCTTCTGT 57.129 39.130 0.00 0.00 0.00 3.41
2858 2894 8.070769 GTCTTCTGTTCTGTAATTCAACCTTTC 58.929 37.037 0.00 0.00 0.00 2.62
2859 2895 7.993183 TCTTCTGTTCTGTAATTCAACCTTTCT 59.007 33.333 0.00 0.00 0.00 2.52
2896 2939 8.671987 ACTTAGATAGGTATCATGTTATGCCT 57.328 34.615 8.71 8.71 43.49 4.75
2902 2945 6.747414 AGGTATCATGTTATGCCTAAGTGA 57.253 37.500 2.64 1.16 39.86 3.41
2909 2952 5.309323 TGTTATGCCTAAGTGACAAATGC 57.691 39.130 0.00 0.00 0.00 3.56
2936 2980 6.069323 TCCTTCAGTCAGAGAGTAATCCTAGT 60.069 42.308 0.00 0.00 0.00 2.57
2937 2981 6.605594 CCTTCAGTCAGAGAGTAATCCTAGTT 59.394 42.308 0.00 0.00 0.00 2.24
2990 3034 4.826274 TCCAGTAGCTGCTTCAGTTTAT 57.174 40.909 7.79 0.00 33.43 1.40
3112 3163 0.815734 CACTTGATCGGGACTACGGT 59.184 55.000 0.00 0.00 0.00 4.83
3133 3184 5.219633 GGTTTGATCAACAACATACACCAC 58.780 41.667 7.89 0.00 38.29 4.16
3145 3196 0.946700 TACACCACGACATTGGCACG 60.947 55.000 0.00 0.00 40.77 5.34
3225 3276 1.143813 CACCATCCCCTGCTCCTTAT 58.856 55.000 0.00 0.00 0.00 1.73
3276 3327 7.795047 TCAAAATATGTGGCATTCTCTAGAGA 58.205 34.615 18.76 18.76 35.27 3.10
3278 3329 6.992664 AATATGTGGCATTCTCTAGAGACT 57.007 37.500 22.25 14.35 37.14 3.24
3279 3330 8.484214 AAATATGTGGCATTCTCTAGAGACTA 57.516 34.615 22.25 9.30 37.14 2.59
3280 3331 7.701539 ATATGTGGCATTCTCTAGAGACTAG 57.298 40.000 22.25 14.96 37.14 2.57
3281 3332 5.117406 TGTGGCATTCTCTAGAGACTAGA 57.883 43.478 22.25 8.15 37.14 2.43
3282 3333 5.129634 TGTGGCATTCTCTAGAGACTAGAG 58.870 45.833 22.25 22.34 41.72 2.43
3283 3334 4.023193 GTGGCATTCTCTAGAGACTAGAGC 60.023 50.000 22.25 18.76 40.52 4.09
3284 3335 4.141274 TGGCATTCTCTAGAGACTAGAGCT 60.141 45.833 22.25 14.03 40.52 4.09
3480 3531 7.088905 ACATAGTTTACTACCAAAGTGAGTCG 58.911 38.462 0.00 0.00 39.39 4.18
3529 3580 5.353400 TCTGATTGAGCTGAAACATTAGCAG 59.647 40.000 0.00 0.00 42.29 4.24
3530 3581 4.397103 TGATTGAGCTGAAACATTAGCAGG 59.603 41.667 0.00 0.00 42.29 4.85
3532 3583 3.754965 TGAGCTGAAACATTAGCAGGTT 58.245 40.909 0.00 0.00 42.29 3.50
3533 3584 4.144297 TGAGCTGAAACATTAGCAGGTTT 58.856 39.130 0.00 0.00 42.29 3.27
3534 3585 5.312895 TGAGCTGAAACATTAGCAGGTTTA 58.687 37.500 0.00 0.00 42.29 2.01
3535 3586 5.181245 TGAGCTGAAACATTAGCAGGTTTAC 59.819 40.000 0.00 0.00 42.29 2.01
3536 3587 5.316987 AGCTGAAACATTAGCAGGTTTACT 58.683 37.500 0.00 0.00 42.29 2.24
3537 3588 6.472887 AGCTGAAACATTAGCAGGTTTACTA 58.527 36.000 0.00 0.00 42.29 1.82
3538 3589 6.595716 AGCTGAAACATTAGCAGGTTTACTAG 59.404 38.462 0.00 0.00 42.29 2.57
3539 3590 6.183360 GCTGAAACATTAGCAGGTTTACTAGG 60.183 42.308 0.00 0.00 37.35 3.02
3540 3591 6.775708 TGAAACATTAGCAGGTTTACTAGGT 58.224 36.000 0.00 0.00 37.35 3.08
3541 3592 6.877322 TGAAACATTAGCAGGTTTACTAGGTC 59.123 38.462 0.00 0.00 37.35 3.85
3562 3622 2.175878 CCTCAGGAGGTTGTGACTTG 57.824 55.000 7.19 0.00 43.61 3.16
3750 3816 9.482175 GTCCCCTTGTACATCTTATCTCTATAT 57.518 37.037 0.00 0.00 0.00 0.86
3792 3858 0.693049 AATCTCAACTGTCGGGGCTT 59.307 50.000 0.00 0.00 0.00 4.35
3900 3966 0.960364 GGCTCCGATGCTTTGGACAA 60.960 55.000 4.42 0.00 31.64 3.18
4068 4292 3.126225 GGCTCTGCTGCTGCTCAC 61.126 66.667 17.00 3.83 40.48 3.51
4077 4301 0.245813 CTGCTGCTCACTGCTACTCA 59.754 55.000 0.00 0.00 43.37 3.41
4079 4303 0.037882 GCTGCTCACTGCTACTCACA 60.038 55.000 0.00 0.00 43.37 3.58
4080 4304 1.405256 GCTGCTCACTGCTACTCACAT 60.405 52.381 0.00 0.00 43.37 3.21
4081 4305 2.538437 CTGCTCACTGCTACTCACATC 58.462 52.381 0.00 0.00 43.37 3.06
4082 4306 2.166050 CTGCTCACTGCTACTCACATCT 59.834 50.000 0.00 0.00 43.37 2.90
4083 4307 2.165234 TGCTCACTGCTACTCACATCTC 59.835 50.000 0.00 0.00 43.37 2.75
4084 4308 2.794282 GCTCACTGCTACTCACATCTCG 60.794 54.545 0.00 0.00 38.95 4.04
4085 4309 2.421775 CTCACTGCTACTCACATCTCGT 59.578 50.000 0.00 0.00 0.00 4.18
4086 4310 3.606687 TCACTGCTACTCACATCTCGTA 58.393 45.455 0.00 0.00 0.00 3.43
4087 4311 4.200092 TCACTGCTACTCACATCTCGTAT 58.800 43.478 0.00 0.00 0.00 3.06
4088 4312 4.035675 TCACTGCTACTCACATCTCGTATG 59.964 45.833 0.00 0.00 0.00 2.39
4089 4313 3.243234 ACTGCTACTCACATCTCGTATGC 60.243 47.826 1.24 0.00 0.00 3.14
4090 4314 2.952310 TGCTACTCACATCTCGTATGCT 59.048 45.455 1.24 0.00 0.00 3.79
4091 4315 3.243201 TGCTACTCACATCTCGTATGCTG 60.243 47.826 1.24 0.78 0.00 4.41
4093 4317 3.428746 ACTCACATCTCGTATGCTGAC 57.571 47.619 1.24 0.00 0.00 3.51
4094 4318 2.099921 ACTCACATCTCGTATGCTGACC 59.900 50.000 1.24 0.00 0.00 4.02
4095 4319 2.360483 CTCACATCTCGTATGCTGACCT 59.640 50.000 1.24 0.00 0.00 3.85
4123 4387 2.287788 GGAGTGCATGTGTTCCTTGTTG 60.288 50.000 0.00 0.00 0.00 3.33
4171 4435 1.002430 GATGTCTGACCTGACTGCCAA 59.998 52.381 5.17 0.00 37.79 4.52
4172 4436 1.059098 TGTCTGACCTGACTGCCAAT 58.941 50.000 5.17 0.00 37.79 3.16
4173 4437 2.256306 TGTCTGACCTGACTGCCAATA 58.744 47.619 5.17 0.00 37.79 1.90
4174 4438 2.840038 TGTCTGACCTGACTGCCAATAT 59.160 45.455 5.17 0.00 37.79 1.28
4175 4439 3.201290 GTCTGACCTGACTGCCAATATG 58.799 50.000 0.00 0.00 34.39 1.78
4176 4440 3.106827 TCTGACCTGACTGCCAATATGA 58.893 45.455 0.00 0.00 0.00 2.15
4177 4441 3.519107 TCTGACCTGACTGCCAATATGAA 59.481 43.478 0.00 0.00 0.00 2.57
4178 4442 3.609853 TGACCTGACTGCCAATATGAAC 58.390 45.455 0.00 0.00 0.00 3.18
4179 4443 2.609459 GACCTGACTGCCAATATGAACG 59.391 50.000 0.00 0.00 0.00 3.95
4180 4444 1.331756 CCTGACTGCCAATATGAACGC 59.668 52.381 0.00 0.00 0.00 4.84
4295 4583 6.828785 ACTGAGTAAAGAAAGAAAGAAAGGCA 59.171 34.615 0.00 0.00 0.00 4.75
4321 4609 2.422127 CAGTTTCCCACACGACAAAACT 59.578 45.455 0.00 0.00 39.94 2.66
4325 4613 0.307760 CCCACACGACAAAACTGCTC 59.692 55.000 0.00 0.00 0.00 4.26
4351 4639 2.125912 CTCTGACCGCACCCTTCG 60.126 66.667 0.00 0.00 0.00 3.79
4354 4642 2.027625 CTGACCGCACCCTTCGAAC 61.028 63.158 0.00 0.00 0.00 3.95
4431 4754 2.124693 CAGCCTCCTCTCCTCGTCC 61.125 68.421 0.00 0.00 0.00 4.79
4462 4785 2.193127 ACCTCCCCGTCATATGAACAA 58.807 47.619 7.07 0.00 0.00 2.83
4474 4797 2.280592 GAACAACCGACCCGTGCT 60.281 61.111 0.00 0.00 0.00 4.40
4490 4813 2.345641 CGTGCTTACTGAATTCTGACGG 59.654 50.000 18.13 8.49 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.128769 CGTAGGAGACATCGTACTATCAAGAG 60.129 46.154 6.56 0.00 42.18 2.85
1 2 5.695363 CGTAGGAGACATCGTACTATCAAGA 59.305 44.000 6.56 0.00 42.18 3.02
2 3 5.695363 TCGTAGGAGACATCGTACTATCAAG 59.305 44.000 6.56 0.00 42.18 3.02
3 4 5.464722 GTCGTAGGAGACATCGTACTATCAA 59.535 44.000 6.56 0.00 42.18 2.57
4 5 4.987285 GTCGTAGGAGACATCGTACTATCA 59.013 45.833 6.56 0.00 42.18 2.15
5 6 5.229423 AGTCGTAGGAGACATCGTACTATC 58.771 45.833 6.56 0.00 42.18 2.08
6 7 5.212532 AGTCGTAGGAGACATCGTACTAT 57.787 43.478 6.56 0.00 42.18 2.12
7 8 4.098501 TGAGTCGTAGGAGACATCGTACTA 59.901 45.833 6.56 0.00 42.18 1.82
8 9 3.118847 TGAGTCGTAGGAGACATCGTACT 60.119 47.826 6.56 0.00 42.18 2.73
9 10 3.193263 TGAGTCGTAGGAGACATCGTAC 58.807 50.000 0.00 0.00 43.24 3.67
10 11 3.531934 TGAGTCGTAGGAGACATCGTA 57.468 47.619 0.00 0.00 43.24 3.43
11 12 2.398252 TGAGTCGTAGGAGACATCGT 57.602 50.000 0.00 0.00 43.24 3.73
12 13 2.678836 ACTTGAGTCGTAGGAGACATCG 59.321 50.000 0.00 0.00 43.24 3.84
13 14 3.065648 GGACTTGAGTCGTAGGAGACATC 59.934 52.174 5.16 0.00 45.65 3.06
14 15 3.018149 GGACTTGAGTCGTAGGAGACAT 58.982 50.000 5.16 0.00 45.65 3.06
15 16 2.224695 TGGACTTGAGTCGTAGGAGACA 60.225 50.000 5.16 0.00 45.65 3.41
16 17 2.162008 GTGGACTTGAGTCGTAGGAGAC 59.838 54.545 5.16 0.00 45.65 3.36
17 18 2.434428 GTGGACTTGAGTCGTAGGAGA 58.566 52.381 5.16 0.00 45.65 3.71
18 19 1.473278 GGTGGACTTGAGTCGTAGGAG 59.527 57.143 5.16 0.00 45.65 3.69
19 20 1.202964 TGGTGGACTTGAGTCGTAGGA 60.203 52.381 5.16 0.00 45.65 2.94
20 21 1.254026 TGGTGGACTTGAGTCGTAGG 58.746 55.000 5.16 0.00 45.65 3.18
21 22 3.057734 GTTTGGTGGACTTGAGTCGTAG 58.942 50.000 5.16 0.00 45.65 3.51
22 23 2.224113 GGTTTGGTGGACTTGAGTCGTA 60.224 50.000 5.16 0.00 45.65 3.43
23 24 1.474498 GGTTTGGTGGACTTGAGTCGT 60.474 52.381 5.16 0.00 45.65 4.34
24 25 1.226746 GGTTTGGTGGACTTGAGTCG 58.773 55.000 5.16 0.00 45.65 4.18
25 26 1.202604 TCGGTTTGGTGGACTTGAGTC 60.203 52.381 2.51 2.51 44.04 3.36
26 27 0.834612 TCGGTTTGGTGGACTTGAGT 59.165 50.000 0.00 0.00 0.00 3.41
27 28 1.961793 TTCGGTTTGGTGGACTTGAG 58.038 50.000 0.00 0.00 0.00 3.02
28 29 2.421751 TTTCGGTTTGGTGGACTTGA 57.578 45.000 0.00 0.00 0.00 3.02
29 30 2.621055 TCATTTCGGTTTGGTGGACTTG 59.379 45.455 0.00 0.00 0.00 3.16
30 31 2.938838 TCATTTCGGTTTGGTGGACTT 58.061 42.857 0.00 0.00 0.00 3.01
31 32 2.649531 TCATTTCGGTTTGGTGGACT 57.350 45.000 0.00 0.00 0.00 3.85
32 33 3.316868 TCTTTCATTTCGGTTTGGTGGAC 59.683 43.478 0.00 0.00 0.00 4.02
33 34 3.556999 TCTTTCATTTCGGTTTGGTGGA 58.443 40.909 0.00 0.00 0.00 4.02
34 35 3.568007 TCTCTTTCATTTCGGTTTGGTGG 59.432 43.478 0.00 0.00 0.00 4.61
35 36 4.275936 AGTCTCTTTCATTTCGGTTTGGTG 59.724 41.667 0.00 0.00 0.00 4.17
36 37 4.461198 AGTCTCTTTCATTTCGGTTTGGT 58.539 39.130 0.00 0.00 0.00 3.67
37 38 5.468746 TGTAGTCTCTTTCATTTCGGTTTGG 59.531 40.000 0.00 0.00 0.00 3.28
38 39 6.363473 GTGTAGTCTCTTTCATTTCGGTTTG 58.637 40.000 0.00 0.00 0.00 2.93
39 40 5.469084 GGTGTAGTCTCTTTCATTTCGGTTT 59.531 40.000 0.00 0.00 0.00 3.27
40 41 4.995487 GGTGTAGTCTCTTTCATTTCGGTT 59.005 41.667 0.00 0.00 0.00 4.44
41 42 4.566987 GGTGTAGTCTCTTTCATTTCGGT 58.433 43.478 0.00 0.00 0.00 4.69
42 43 3.612860 CGGTGTAGTCTCTTTCATTTCGG 59.387 47.826 0.00 0.00 0.00 4.30
43 44 4.235360 ACGGTGTAGTCTCTTTCATTTCG 58.765 43.478 0.00 0.00 0.00 3.46
44 45 5.765072 GACGGTGTAGTCTCTTTCATTTC 57.235 43.478 0.00 0.00 38.09 2.17
55 56 4.326548 GCTTTATGTGAAGACGGTGTAGTC 59.673 45.833 0.00 0.00 41.23 2.59
56 57 4.021368 AGCTTTATGTGAAGACGGTGTAGT 60.021 41.667 0.00 0.00 0.00 2.73
57 58 4.495422 AGCTTTATGTGAAGACGGTGTAG 58.505 43.478 0.00 0.00 0.00 2.74
58 59 4.491676 GAGCTTTATGTGAAGACGGTGTA 58.508 43.478 0.00 0.00 0.00 2.90
59 60 3.326747 GAGCTTTATGTGAAGACGGTGT 58.673 45.455 0.00 0.00 0.00 4.16
60 61 2.673368 GGAGCTTTATGTGAAGACGGTG 59.327 50.000 0.00 0.00 0.00 4.94
61 62 2.674177 CGGAGCTTTATGTGAAGACGGT 60.674 50.000 0.00 0.00 0.00 4.83
62 63 1.927174 CGGAGCTTTATGTGAAGACGG 59.073 52.381 0.00 0.00 0.00 4.79
63 64 2.854777 CTCGGAGCTTTATGTGAAGACG 59.145 50.000 0.00 0.00 0.00 4.18
64 65 3.119101 TCCTCGGAGCTTTATGTGAAGAC 60.119 47.826 0.00 0.00 0.00 3.01
65 66 3.096852 TCCTCGGAGCTTTATGTGAAGA 58.903 45.455 0.00 0.00 0.00 2.87
66 67 3.131223 TCTCCTCGGAGCTTTATGTGAAG 59.869 47.826 8.11 0.00 41.71 3.02
67 68 3.096852 TCTCCTCGGAGCTTTATGTGAA 58.903 45.455 8.11 0.00 41.71 3.18
68 69 2.735151 TCTCCTCGGAGCTTTATGTGA 58.265 47.619 8.11 0.00 41.71 3.58
69 70 3.526931 TTCTCCTCGGAGCTTTATGTG 57.473 47.619 8.11 0.00 41.71 3.21
70 71 3.769844 TCTTTCTCCTCGGAGCTTTATGT 59.230 43.478 8.11 0.00 41.71 2.29
71 72 4.392921 TCTTTCTCCTCGGAGCTTTATG 57.607 45.455 8.11 0.00 41.71 1.90
72 73 5.606505 GATTCTTTCTCCTCGGAGCTTTAT 58.393 41.667 8.11 0.00 41.71 1.40
73 74 4.440250 CGATTCTTTCTCCTCGGAGCTTTA 60.440 45.833 8.11 0.00 41.71 1.85
74 75 3.677424 CGATTCTTTCTCCTCGGAGCTTT 60.677 47.826 8.11 0.00 41.71 3.51
75 76 2.159170 CGATTCTTTCTCCTCGGAGCTT 60.159 50.000 8.11 0.00 41.71 3.74
76 77 1.407258 CGATTCTTTCTCCTCGGAGCT 59.593 52.381 8.11 0.00 41.71 4.09
77 78 1.135333 ACGATTCTTTCTCCTCGGAGC 59.865 52.381 8.11 0.00 41.71 4.70
78 79 2.685897 AGACGATTCTTTCTCCTCGGAG 59.314 50.000 6.63 6.63 43.21 4.63
79 80 2.683867 GAGACGATTCTTTCTCCTCGGA 59.316 50.000 0.00 0.00 35.52 4.55
80 81 2.539953 CGAGACGATTCTTTCTCCTCGG 60.540 54.545 0.00 0.00 38.83 4.63
81 82 2.096174 ACGAGACGATTCTTTCTCCTCG 59.904 50.000 0.00 0.00 43.46 4.63
82 83 3.430931 CACGAGACGATTCTTTCTCCTC 58.569 50.000 0.00 0.00 35.74 3.71
83 84 2.416162 GCACGAGACGATTCTTTCTCCT 60.416 50.000 0.00 0.00 35.74 3.69
84 85 1.921230 GCACGAGACGATTCTTTCTCC 59.079 52.381 0.00 0.00 35.74 3.71
85 86 1.921230 GGCACGAGACGATTCTTTCTC 59.079 52.381 0.00 3.24 35.80 2.87
86 87 1.272490 TGGCACGAGACGATTCTTTCT 59.728 47.619 0.00 0.00 29.47 2.52
87 88 1.710013 TGGCACGAGACGATTCTTTC 58.290 50.000 0.00 0.00 29.47 2.62
88 89 2.163818 TTGGCACGAGACGATTCTTT 57.836 45.000 0.00 0.00 29.47 2.52
89 90 2.069273 CTTTGGCACGAGACGATTCTT 58.931 47.619 0.00 0.00 29.47 2.52
90 91 1.272490 TCTTTGGCACGAGACGATTCT 59.728 47.619 0.00 0.00 33.37 2.40
91 92 1.710013 TCTTTGGCACGAGACGATTC 58.290 50.000 0.00 0.00 0.00 2.52
92 93 2.163818 TTCTTTGGCACGAGACGATT 57.836 45.000 0.00 0.00 0.00 3.34
93 94 2.002586 CATTCTTTGGCACGAGACGAT 58.997 47.619 0.00 0.00 0.00 3.73
94 95 1.000394 TCATTCTTTGGCACGAGACGA 60.000 47.619 0.00 0.00 0.00 4.20
95 96 1.428448 TCATTCTTTGGCACGAGACG 58.572 50.000 0.00 0.00 0.00 4.18
96 97 3.686726 AGATTCATTCTTTGGCACGAGAC 59.313 43.478 0.00 0.00 0.00 3.36
97 98 3.935203 GAGATTCATTCTTTGGCACGAGA 59.065 43.478 0.00 0.00 33.74 4.04
98 99 3.937706 AGAGATTCATTCTTTGGCACGAG 59.062 43.478 0.00 0.00 33.74 4.18
99 100 3.686241 CAGAGATTCATTCTTTGGCACGA 59.314 43.478 0.00 0.00 33.85 4.35
100 101 3.686241 TCAGAGATTCATTCTTTGGCACG 59.314 43.478 0.00 0.00 37.22 5.34
101 102 5.633830 TTCAGAGATTCATTCTTTGGCAC 57.366 39.130 0.00 0.00 37.22 5.01
102 103 6.845758 ATTTCAGAGATTCATTCTTTGGCA 57.154 33.333 0.00 0.00 37.22 4.92
103 104 7.994194 AGTATTTCAGAGATTCATTCTTTGGC 58.006 34.615 0.00 0.00 37.22 4.52
104 105 9.170734 TGAGTATTTCAGAGATTCATTCTTTGG 57.829 33.333 0.00 0.00 37.22 3.28
107 108 8.877779 CGTTGAGTATTTCAGAGATTCATTCTT 58.122 33.333 0.00 0.00 37.07 2.52
108 109 7.010923 GCGTTGAGTATTTCAGAGATTCATTCT 59.989 37.037 0.00 0.00 37.07 2.40
109 110 7.122550 GCGTTGAGTATTTCAGAGATTCATTC 58.877 38.462 0.00 0.00 37.07 2.67
110 111 6.595326 TGCGTTGAGTATTTCAGAGATTCATT 59.405 34.615 0.00 0.00 37.07 2.57
111 112 6.036517 GTGCGTTGAGTATTTCAGAGATTCAT 59.963 38.462 0.00 0.00 37.07 2.57
112 113 5.348724 GTGCGTTGAGTATTTCAGAGATTCA 59.651 40.000 0.00 0.00 37.07 2.57
113 114 5.348724 TGTGCGTTGAGTATTTCAGAGATTC 59.651 40.000 0.00 0.00 37.07 2.52
114 115 5.120830 GTGTGCGTTGAGTATTTCAGAGATT 59.879 40.000 0.00 0.00 37.07 2.40
115 116 4.627467 GTGTGCGTTGAGTATTTCAGAGAT 59.373 41.667 0.00 0.00 37.07 2.75
116 117 3.987868 GTGTGCGTTGAGTATTTCAGAGA 59.012 43.478 0.00 0.00 37.07 3.10
117 118 3.181540 CGTGTGCGTTGAGTATTTCAGAG 60.182 47.826 0.00 0.00 37.07 3.35
118 119 2.729360 CGTGTGCGTTGAGTATTTCAGA 59.271 45.455 0.00 0.00 37.07 3.27
119 120 2.729360 TCGTGTGCGTTGAGTATTTCAG 59.271 45.455 0.00 0.00 39.49 3.02
120 121 2.745102 TCGTGTGCGTTGAGTATTTCA 58.255 42.857 0.00 0.00 39.49 2.69
121 122 3.991605 ATCGTGTGCGTTGAGTATTTC 57.008 42.857 0.00 0.00 39.49 2.17
122 123 4.927425 ACTAATCGTGTGCGTTGAGTATTT 59.073 37.500 0.00 0.00 39.49 1.40
123 124 4.491676 ACTAATCGTGTGCGTTGAGTATT 58.508 39.130 0.00 0.00 39.49 1.89
124 125 4.103357 GACTAATCGTGTGCGTTGAGTAT 58.897 43.478 0.00 0.00 39.49 2.12
125 126 3.495193 GACTAATCGTGTGCGTTGAGTA 58.505 45.455 0.00 0.00 39.49 2.59
126 127 2.325761 GACTAATCGTGTGCGTTGAGT 58.674 47.619 0.00 0.00 39.49 3.41
127 128 1.654105 GGACTAATCGTGTGCGTTGAG 59.346 52.381 0.00 0.00 39.49 3.02
128 129 1.705256 GGACTAATCGTGTGCGTTGA 58.295 50.000 0.00 0.00 39.49 3.18
129 130 0.365523 CGGACTAATCGTGTGCGTTG 59.634 55.000 0.00 0.00 42.68 4.10
130 131 2.733127 CGGACTAATCGTGTGCGTT 58.267 52.632 0.00 0.00 42.68 4.84
131 132 4.470876 CGGACTAATCGTGTGCGT 57.529 55.556 0.00 0.00 42.68 5.24
133 134 0.793861 TTTGCGGACTAATCGTGTGC 59.206 50.000 0.00 0.00 0.00 4.57
134 135 2.724839 GCTTTTGCGGACTAATCGTGTG 60.725 50.000 0.00 0.00 34.86 3.82
135 136 1.463444 GCTTTTGCGGACTAATCGTGT 59.537 47.619 0.00 0.00 34.86 4.49
136 137 2.159467 GCTTTTGCGGACTAATCGTG 57.841 50.000 0.00 0.00 34.86 4.35
141 142 9.392705 ATTGATGACAATGCTTTTGCGGACTAA 62.393 37.037 0.00 0.00 43.90 2.24
142 143 8.013948 ATTGATGACAATGCTTTTGCGGACTA 62.014 38.462 0.00 0.00 43.90 2.59
143 144 7.293939 ATTGATGACAATGCTTTTGCGGACT 62.294 40.000 0.00 0.00 43.90 3.85
144 145 5.147208 ATTGATGACAATGCTTTTGCGGAC 61.147 41.667 0.00 0.00 43.90 4.79
145 146 3.056678 ATTGATGACAATGCTTTTGCGGA 60.057 39.130 0.00 0.00 43.90 5.54
146 147 3.255725 ATTGATGACAATGCTTTTGCGG 58.744 40.909 0.00 0.00 43.90 5.69
147 148 3.921630 TGATTGATGACAATGCTTTTGCG 59.078 39.130 0.00 0.00 45.30 4.85
148 149 4.092383 GGTGATTGATGACAATGCTTTTGC 59.908 41.667 0.00 0.00 45.30 3.68
149 150 5.231702 TGGTGATTGATGACAATGCTTTTG 58.768 37.500 0.00 0.00 45.30 2.44
150 151 5.471556 TGGTGATTGATGACAATGCTTTT 57.528 34.783 0.00 0.00 45.30 2.27
151 152 5.471556 TTGGTGATTGATGACAATGCTTT 57.528 34.783 0.00 0.00 45.30 3.51
152 153 5.471556 TTTGGTGATTGATGACAATGCTT 57.528 34.783 0.00 0.00 45.30 3.91
153 154 5.011329 AGTTTTGGTGATTGATGACAATGCT 59.989 36.000 0.00 0.00 45.30 3.79
154 155 5.232463 AGTTTTGGTGATTGATGACAATGC 58.768 37.500 0.00 0.00 45.30 3.56
155 156 6.808212 GGTAGTTTTGGTGATTGATGACAATG 59.192 38.462 0.00 0.00 45.30 2.82
157 158 6.068010 AGGTAGTTTTGGTGATTGATGACAA 58.932 36.000 0.00 0.00 40.42 3.18
158 159 5.630121 AGGTAGTTTTGGTGATTGATGACA 58.370 37.500 0.00 0.00 0.00 3.58
159 160 7.103641 TCTAGGTAGTTTTGGTGATTGATGAC 58.896 38.462 0.00 0.00 0.00 3.06
160 161 7.180229 TCTCTAGGTAGTTTTGGTGATTGATGA 59.820 37.037 0.00 0.00 0.00 2.92
161 162 7.331026 TCTCTAGGTAGTTTTGGTGATTGATG 58.669 38.462 0.00 0.00 0.00 3.07
162 163 7.400339 TCTCTCTAGGTAGTTTTGGTGATTGAT 59.600 37.037 0.00 0.00 0.00 2.57
163 164 6.724441 TCTCTCTAGGTAGTTTTGGTGATTGA 59.276 38.462 0.00 0.00 0.00 2.57
164 165 6.936279 TCTCTCTAGGTAGTTTTGGTGATTG 58.064 40.000 0.00 0.00 0.00 2.67
165 166 6.954684 TCTCTCTCTAGGTAGTTTTGGTGATT 59.045 38.462 0.00 0.00 0.00 2.57
166 167 6.494952 TCTCTCTCTAGGTAGTTTTGGTGAT 58.505 40.000 0.00 0.00 0.00 3.06
167 168 5.888901 TCTCTCTCTAGGTAGTTTTGGTGA 58.111 41.667 0.00 0.00 0.00 4.02
168 169 6.783708 ATCTCTCTCTAGGTAGTTTTGGTG 57.216 41.667 0.00 0.00 0.00 4.17
169 170 7.014808 GCATATCTCTCTCTAGGTAGTTTTGGT 59.985 40.741 0.00 0.00 0.00 3.67
170 171 7.375053 GCATATCTCTCTCTAGGTAGTTTTGG 58.625 42.308 0.00 0.00 0.00 3.28
171 172 7.375053 GGCATATCTCTCTCTAGGTAGTTTTG 58.625 42.308 0.00 0.00 0.00 2.44
172 173 6.495526 GGGCATATCTCTCTCTAGGTAGTTTT 59.504 42.308 0.00 0.00 0.00 2.43
173 174 6.014012 GGGCATATCTCTCTCTAGGTAGTTT 58.986 44.000 0.00 0.00 0.00 2.66
174 175 5.314841 AGGGCATATCTCTCTCTAGGTAGTT 59.685 44.000 0.00 0.00 0.00 2.24
175 176 4.855599 AGGGCATATCTCTCTCTAGGTAGT 59.144 45.833 0.00 0.00 0.00 2.73
176 177 5.450818 AGGGCATATCTCTCTCTAGGTAG 57.549 47.826 0.00 0.00 0.00 3.18
177 178 6.274908 TGTTAGGGCATATCTCTCTCTAGGTA 59.725 42.308 0.00 0.00 0.00 3.08
178 179 5.075205 TGTTAGGGCATATCTCTCTCTAGGT 59.925 44.000 0.00 0.00 0.00 3.08
179 180 5.417580 GTGTTAGGGCATATCTCTCTCTAGG 59.582 48.000 0.00 0.00 0.00 3.02
180 181 6.007076 TGTGTTAGGGCATATCTCTCTCTAG 58.993 44.000 0.00 0.00 0.00 2.43
181 182 5.770663 GTGTGTTAGGGCATATCTCTCTCTA 59.229 44.000 0.00 0.00 0.00 2.43
182 183 4.586841 GTGTGTTAGGGCATATCTCTCTCT 59.413 45.833 0.00 0.00 0.00 3.10
183 184 4.557695 CGTGTGTTAGGGCATATCTCTCTC 60.558 50.000 0.00 0.00 0.00 3.20
184 185 3.319405 CGTGTGTTAGGGCATATCTCTCT 59.681 47.826 0.00 0.00 0.00 3.10
185 186 3.068307 ACGTGTGTTAGGGCATATCTCTC 59.932 47.826 0.00 0.00 0.00 3.20
186 187 3.031736 ACGTGTGTTAGGGCATATCTCT 58.968 45.455 0.00 0.00 0.00 3.10
187 188 3.123804 CACGTGTGTTAGGGCATATCTC 58.876 50.000 7.58 0.00 0.00 2.75
188 189 2.764010 TCACGTGTGTTAGGGCATATCT 59.236 45.455 16.51 0.00 0.00 1.98
189 190 3.173668 TCACGTGTGTTAGGGCATATC 57.826 47.619 16.51 0.00 0.00 1.63
190 191 3.620427 TTCACGTGTGTTAGGGCATAT 57.380 42.857 16.51 0.00 0.00 1.78
191 192 3.620427 ATTCACGTGTGTTAGGGCATA 57.380 42.857 16.51 0.00 0.00 3.14
192 193 2.487762 CAATTCACGTGTGTTAGGGCAT 59.512 45.455 16.51 0.00 0.00 4.40
193 194 1.876799 CAATTCACGTGTGTTAGGGCA 59.123 47.619 16.51 0.00 0.00 5.36
194 195 2.095919 GTCAATTCACGTGTGTTAGGGC 60.096 50.000 16.51 0.00 0.00 5.19
195 196 3.135225 TGTCAATTCACGTGTGTTAGGG 58.865 45.455 16.51 0.51 0.00 3.53
196 197 4.804608 TTGTCAATTCACGTGTGTTAGG 57.195 40.909 16.51 2.10 0.00 2.69
197 198 7.305935 CCAAAATTGTCAATTCACGTGTGTTAG 60.306 37.037 16.51 3.58 0.00 2.34
198 199 6.473778 CCAAAATTGTCAATTCACGTGTGTTA 59.526 34.615 16.51 0.10 0.00 2.41
199 200 5.290643 CCAAAATTGTCAATTCACGTGTGTT 59.709 36.000 16.51 8.81 0.00 3.32
200 201 4.803088 CCAAAATTGTCAATTCACGTGTGT 59.197 37.500 16.51 2.29 0.00 3.72
201 202 4.803088 ACCAAAATTGTCAATTCACGTGTG 59.197 37.500 16.51 6.89 0.00 3.82
202 203 4.803088 CACCAAAATTGTCAATTCACGTGT 59.197 37.500 16.51 0.00 0.00 4.49
211 212 0.249657 GCCGCCACCAAAATTGTCAA 60.250 50.000 0.00 0.00 0.00 3.18
214 215 0.396060 ATTGCCGCCACCAAAATTGT 59.604 45.000 0.00 0.00 0.00 2.71
243 244 0.232303 GTCGCAGAACACAAACGGAG 59.768 55.000 0.00 0.00 39.69 4.63
257 259 0.324614 ATGTCCAACCATCTGTCGCA 59.675 50.000 0.00 0.00 0.00 5.10
260 262 2.787473 TCCATGTCCAACCATCTGTC 57.213 50.000 0.00 0.00 0.00 3.51
265 267 1.273154 TGGCAATCCATGTCCAACCAT 60.273 47.619 0.00 0.00 37.47 3.55
299 301 1.133025 GGCGTTTGATAAGCTGCACAT 59.867 47.619 1.02 0.00 0.00 3.21
300 302 0.521291 GGCGTTTGATAAGCTGCACA 59.479 50.000 1.02 0.00 0.00 4.57
301 303 0.804989 AGGCGTTTGATAAGCTGCAC 59.195 50.000 1.02 0.00 0.00 4.57
323 325 0.539986 TCACGGGAAGGTCATAAGGC 59.460 55.000 0.00 0.00 0.00 4.35
324 326 3.343941 TTTCACGGGAAGGTCATAAGG 57.656 47.619 0.00 0.00 33.82 2.69
457 467 0.969149 TCATCCTCGTGTCAACTGCT 59.031 50.000 0.00 0.00 0.00 4.24
534 546 0.109919 GACGTTCGGATTTTGCCCAC 60.110 55.000 0.00 0.00 0.00 4.61
536 548 1.504900 GGACGTTCGGATTTTGCCC 59.495 57.895 0.00 0.00 0.00 5.36
547 559 0.815734 TGAAGAGATCCCGGACGTTC 59.184 55.000 0.73 4.07 0.00 3.95
548 560 1.263356 TTGAAGAGATCCCGGACGTT 58.737 50.000 0.73 0.00 0.00 3.99
741 755 2.584970 TCGGCATCGCGATGGAAC 60.585 61.111 40.84 27.83 39.16 3.62
1455 1482 1.590147 GTCGTGTCCCAGGACGAAT 59.410 57.895 12.08 0.00 45.55 3.34
1720 1748 6.415867 CGCCTTTCTTAGCATCAATAACAATG 59.584 38.462 0.00 0.00 0.00 2.82
1747 1775 7.220740 TCCTACAATTACATTCACACAAGACA 58.779 34.615 0.00 0.00 0.00 3.41
1768 1796 0.636647 TCCTGTGGCTGATCCTCCTA 59.363 55.000 0.00 0.00 35.26 2.94
1866 1894 6.146898 TGAAGAATTATGCATGCATGAATCG 58.853 36.000 37.43 3.47 37.82 3.34
1891 1919 1.669760 CACCAAAACGCCGCCTCTA 60.670 57.895 0.00 0.00 0.00 2.43
1913 1941 4.627611 ATTCAAGGAATCATCAAGCACG 57.372 40.909 0.00 0.00 0.00 5.34
2051 2079 3.932710 CGTGGTAGAATCAAGCAGCTTTA 59.067 43.478 4.38 0.00 0.00 1.85
2066 2094 1.724623 CCAATTCACACGTCGTGGTAG 59.275 52.381 27.77 17.23 46.36 3.18
2122 2150 2.970974 GCTCCTCGCAAACTGCACC 61.971 63.158 0.00 0.00 45.36 5.01
2182 2210 7.675619 ACATCCTTTTTCTCATTAGGTTGGAAT 59.324 33.333 0.00 0.00 33.67 3.01
2233 2261 1.475034 GCGAGAACCCCTATCATTGCA 60.475 52.381 0.00 0.00 0.00 4.08
2242 2270 2.120718 AGACCTGCGAGAACCCCT 59.879 61.111 0.00 0.00 0.00 4.79
2284 2312 4.155644 GGGATTGCATAGAGCTTTAGCATC 59.844 45.833 4.33 0.00 45.94 3.91
2378 2406 5.594725 AGTTCTTCACAGTGTACTCTCTTGA 59.405 40.000 0.00 0.00 0.00 3.02
2379 2407 5.837437 AGTTCTTCACAGTGTACTCTCTTG 58.163 41.667 0.00 0.00 0.00 3.02
2380 2408 5.010213 GGAGTTCTTCACAGTGTACTCTCTT 59.990 44.000 18.17 0.00 34.08 2.85
2381 2409 4.521256 GGAGTTCTTCACAGTGTACTCTCT 59.479 45.833 18.17 4.93 34.08 3.10
2382 2410 4.278669 TGGAGTTCTTCACAGTGTACTCTC 59.721 45.833 18.17 11.41 34.08 3.20
2383 2411 4.215908 TGGAGTTCTTCACAGTGTACTCT 58.784 43.478 18.17 0.00 34.08 3.24
2384 2412 4.038162 ACTGGAGTTCTTCACAGTGTACTC 59.962 45.833 12.75 12.75 42.14 2.59
2385 2413 3.961408 ACTGGAGTTCTTCACAGTGTACT 59.039 43.478 0.00 0.00 42.14 2.73
2386 2414 4.323553 ACTGGAGTTCTTCACAGTGTAC 57.676 45.455 0.00 0.00 42.14 2.90
2390 2418 4.696479 AATCACTGGAGTTCTTCACAGT 57.304 40.909 0.00 0.00 44.36 3.55
2391 2419 7.678947 AATTAATCACTGGAGTTCTTCACAG 57.321 36.000 0.00 0.00 37.01 3.66
2392 2420 8.352201 CAAAATTAATCACTGGAGTTCTTCACA 58.648 33.333 0.00 0.00 0.00 3.58
2393 2421 7.809806 CCAAAATTAATCACTGGAGTTCTTCAC 59.190 37.037 5.00 0.00 0.00 3.18
2394 2422 7.505585 ACCAAAATTAATCACTGGAGTTCTTCA 59.494 33.333 14.28 0.00 0.00 3.02
2395 2423 7.809806 CACCAAAATTAATCACTGGAGTTCTTC 59.190 37.037 14.28 0.00 0.00 2.87
2396 2424 7.505585 TCACCAAAATTAATCACTGGAGTTCTT 59.494 33.333 14.28 0.00 0.00 2.52
2397 2425 7.004086 TCACCAAAATTAATCACTGGAGTTCT 58.996 34.615 14.28 0.00 0.00 3.01
2398 2426 7.214467 TCACCAAAATTAATCACTGGAGTTC 57.786 36.000 14.28 0.00 0.00 3.01
2399 2427 7.433680 GTTCACCAAAATTAATCACTGGAGTT 58.566 34.615 14.28 0.00 0.00 3.01
2400 2428 6.015434 GGTTCACCAAAATTAATCACTGGAGT 60.015 38.462 14.28 0.00 35.64 3.85
2401 2429 6.389906 GGTTCACCAAAATTAATCACTGGAG 58.610 40.000 14.28 8.61 35.64 3.86
2402 2430 5.245075 GGGTTCACCAAAATTAATCACTGGA 59.755 40.000 14.28 0.00 39.85 3.86
2403 2431 5.245977 AGGGTTCACCAAAATTAATCACTGG 59.754 40.000 0.00 8.25 43.89 4.00
2404 2432 6.158598 CAGGGTTCACCAAAATTAATCACTG 58.841 40.000 0.00 0.00 43.89 3.66
2405 2433 5.838521 ACAGGGTTCACCAAAATTAATCACT 59.161 36.000 0.00 0.00 43.89 3.41
2472 2501 3.630769 CCTTGTCTTCATGACCATGATGG 59.369 47.826 10.53 10.53 46.12 3.51
2546 2575 5.477984 AGCAGTTTTCCAGAAGCATTGATTA 59.522 36.000 0.00 0.00 0.00 1.75
2559 2588 7.984050 TGATTTTGAACATTAAGCAGTTTTCCA 59.016 29.630 0.00 0.00 0.00 3.53
2563 2592 8.776470 CCATTGATTTTGAACATTAAGCAGTTT 58.224 29.630 0.00 0.00 0.00 2.66
2654 2684 6.339730 TGTTTAGTTTTCTGTTCTCCACGTA 58.660 36.000 0.00 0.00 0.00 3.57
2656 2686 5.728351 TGTTTAGTTTTCTGTTCTCCACG 57.272 39.130 0.00 0.00 0.00 4.94
2739 2774 2.092323 GTGCCCTTATGAACCTTCCAC 58.908 52.381 0.00 0.00 0.00 4.02
2813 2849 8.286097 CAGAAGACCAGAAGAACTAACAATTTC 58.714 37.037 0.00 0.00 0.00 2.17
2833 2869 7.993183 AGAAAGGTTGAATTACAGAACAGAAGA 59.007 33.333 0.00 0.00 0.00 2.87
2834 2870 8.159344 AGAAAGGTTGAATTACAGAACAGAAG 57.841 34.615 0.00 0.00 0.00 2.85
2835 2871 9.052759 GTAGAAAGGTTGAATTACAGAACAGAA 57.947 33.333 0.00 0.00 0.00 3.02
2836 2872 8.208224 TGTAGAAAGGTTGAATTACAGAACAGA 58.792 33.333 0.00 0.00 0.00 3.41
2837 2873 8.378172 TGTAGAAAGGTTGAATTACAGAACAG 57.622 34.615 0.00 0.00 0.00 3.16
2838 2874 8.783093 CATGTAGAAAGGTTGAATTACAGAACA 58.217 33.333 0.00 0.00 0.00 3.18
2839 2875 8.784043 ACATGTAGAAAGGTTGAATTACAGAAC 58.216 33.333 0.00 0.00 0.00 3.01
2840 2876 8.783093 CACATGTAGAAAGGTTGAATTACAGAA 58.217 33.333 0.00 0.00 0.00 3.02
2858 2894 7.584122 ACCTATCTAAGTACCACACATGTAG 57.416 40.000 0.00 0.00 0.00 2.74
2859 2895 9.293404 GATACCTATCTAAGTACCACACATGTA 57.707 37.037 0.00 0.00 0.00 2.29
2896 2939 5.376625 ACTGAAGGAAGCATTTGTCACTTA 58.623 37.500 0.00 0.00 0.00 2.24
2902 2945 4.070716 CTCTGACTGAAGGAAGCATTTGT 58.929 43.478 0.00 0.00 0.00 2.83
2909 2952 5.656416 AGGATTACTCTCTGACTGAAGGAAG 59.344 44.000 0.00 0.00 0.00 3.46
2965 3009 4.026356 ACTGAAGCAGCTACTGGAAAAT 57.974 40.909 0.00 0.00 34.37 1.82
3041 3092 7.255104 CCATTCCTATTAGTTTGCAAAGCGATA 60.255 37.037 13.26 9.62 29.71 2.92
3112 3163 4.816925 TCGTGGTGTATGTTGTTGATCAAA 59.183 37.500 10.35 0.00 37.81 2.69
3133 3184 1.226101 GACATGCGTGCCAATGTCG 60.226 57.895 5.64 0.00 34.85 4.35
3145 3196 5.287226 GGGAAAAGATGATGAATGACATGC 58.713 41.667 0.00 0.00 39.56 4.06
3225 3276 3.897239 TGTTCCAGAAAAAGGCAAGAGA 58.103 40.909 0.00 0.00 0.00 3.10
3276 3327 6.424883 TCTAGTTAGCAAAGGTAGCTCTAGT 58.575 40.000 0.00 0.00 42.32 2.57
3278 3329 6.834451 ACATCTAGTTAGCAAAGGTAGCTCTA 59.166 38.462 0.00 0.00 42.32 2.43
3279 3330 5.659079 ACATCTAGTTAGCAAAGGTAGCTCT 59.341 40.000 0.00 0.00 42.32 4.09
3280 3331 5.908341 ACATCTAGTTAGCAAAGGTAGCTC 58.092 41.667 0.00 0.00 42.32 4.09
3281 3332 5.941555 ACATCTAGTTAGCAAAGGTAGCT 57.058 39.130 0.00 0.00 45.77 3.32
3282 3333 5.294552 CCAACATCTAGTTAGCAAAGGTAGC 59.705 44.000 0.00 0.00 38.74 3.58
3283 3334 6.407202 ACCAACATCTAGTTAGCAAAGGTAG 58.593 40.000 0.00 0.00 38.74 3.18
3284 3335 6.368779 ACCAACATCTAGTTAGCAAAGGTA 57.631 37.500 0.00 0.00 38.74 3.08
3480 3531 2.206750 TGTGCACAAGTACTCGTTTCC 58.793 47.619 19.28 0.00 0.00 3.13
3529 3580 3.438183 TCCTGAGGTGACCTAGTAAACC 58.562 50.000 2.97 0.00 31.76 3.27
3530 3581 3.447944 CCTCCTGAGGTGACCTAGTAAAC 59.552 52.174 2.97 0.00 43.61 2.01
3532 3583 3.383698 CCTCCTGAGGTGACCTAGTAA 57.616 52.381 2.97 0.00 43.61 2.24
3562 3622 3.557264 CCTGGTCAGGGTGTTTAACTCTC 60.557 52.174 9.08 0.00 37.59 3.20
3662 3728 4.588805 GCAATTGCTCTTTTACAATGGC 57.411 40.909 23.21 0.00 43.79 4.40
3900 3966 8.679100 CATTTACTGTTCTGTACTAGTAGCTCT 58.321 37.037 1.87 0.00 0.00 4.09
3946 4167 5.220567 GGAAACAATCGATCTTTCTCTCTGC 60.221 44.000 20.00 6.52 0.00 4.26
4034 4255 5.403466 GCAGAGCCACAAACTAAAAAGATTG 59.597 40.000 0.00 0.00 0.00 2.67
4042 4266 1.202806 AGCAGCAGAGCCACAAACTAA 60.203 47.619 0.00 0.00 34.23 2.24
4068 4292 3.004210 AGCATACGAGATGTGAGTAGCAG 59.996 47.826 0.00 0.00 0.00 4.24
4077 4301 5.339008 TTTTAGGTCAGCATACGAGATGT 57.661 39.130 0.00 0.00 0.00 3.06
4079 4303 6.493802 TCCTATTTTAGGTCAGCATACGAGAT 59.506 38.462 0.00 0.00 46.32 2.75
4080 4304 5.831525 TCCTATTTTAGGTCAGCATACGAGA 59.168 40.000 0.00 0.00 46.32 4.04
4081 4305 6.085555 TCCTATTTTAGGTCAGCATACGAG 57.914 41.667 0.00 0.00 46.32 4.18
4082 4306 5.597182 ACTCCTATTTTAGGTCAGCATACGA 59.403 40.000 0.00 0.00 46.32 3.43
4083 4307 5.692204 CACTCCTATTTTAGGTCAGCATACG 59.308 44.000 0.72 0.00 46.32 3.06
4084 4308 5.467063 GCACTCCTATTTTAGGTCAGCATAC 59.533 44.000 0.72 0.00 46.32 2.39
4085 4309 5.130311 TGCACTCCTATTTTAGGTCAGCATA 59.870 40.000 10.31 0.00 46.32 3.14
4086 4310 4.080356 TGCACTCCTATTTTAGGTCAGCAT 60.080 41.667 10.31 0.00 46.32 3.79
4087 4311 3.263170 TGCACTCCTATTTTAGGTCAGCA 59.737 43.478 10.31 10.31 46.32 4.41
4088 4312 3.873910 TGCACTCCTATTTTAGGTCAGC 58.126 45.455 0.72 4.38 46.32 4.26
4089 4313 5.295292 CACATGCACTCCTATTTTAGGTCAG 59.705 44.000 0.00 0.00 46.32 3.51
4090 4314 5.185454 CACATGCACTCCTATTTTAGGTCA 58.815 41.667 0.00 0.00 46.32 4.02
4091 4315 5.186198 ACACATGCACTCCTATTTTAGGTC 58.814 41.667 0.00 0.00 46.32 3.85
4094 4318 5.882557 AGGAACACATGCACTCCTATTTTAG 59.117 40.000 8.02 0.00 36.51 1.85
4095 4319 5.815581 AGGAACACATGCACTCCTATTTTA 58.184 37.500 8.02 0.00 36.51 1.52
4123 4387 4.570930 AGAGAAATCCCGTCTTTCTGTTC 58.429 43.478 8.34 0.00 41.73 3.18
4171 4435 2.297701 GGGGTGAATGTGCGTTCATAT 58.702 47.619 9.66 0.00 39.99 1.78
4172 4436 1.680555 GGGGGTGAATGTGCGTTCATA 60.681 52.381 9.66 0.00 39.99 2.15
4173 4437 0.965363 GGGGGTGAATGTGCGTTCAT 60.965 55.000 9.66 0.00 39.99 2.57
4174 4438 1.602323 GGGGGTGAATGTGCGTTCA 60.602 57.895 2.98 2.98 35.84 3.18
4175 4439 1.303317 AGGGGGTGAATGTGCGTTC 60.303 57.895 0.00 0.00 0.00 3.95
4176 4440 1.303317 GAGGGGGTGAATGTGCGTT 60.303 57.895 0.00 0.00 0.00 4.84
4177 4441 2.224159 AGAGGGGGTGAATGTGCGT 61.224 57.895 0.00 0.00 0.00 5.24
4178 4442 1.746615 CAGAGGGGGTGAATGTGCG 60.747 63.158 0.00 0.00 0.00 5.34
4179 4443 0.038166 TTCAGAGGGGGTGAATGTGC 59.962 55.000 0.00 0.00 0.00 4.57
4180 4444 2.648059 GATTCAGAGGGGGTGAATGTG 58.352 52.381 3.13 0.00 43.26 3.21
4295 4583 0.250124 TCGTGTGGGAAACTGCGAAT 60.250 50.000 0.00 0.00 35.24 3.34
4321 4609 1.615651 GGTCAGAGTCAGAGAGGAGCA 60.616 57.143 0.00 0.00 0.00 4.26
4325 4613 0.962855 TGCGGTCAGAGTCAGAGAGG 60.963 60.000 0.00 0.00 0.00 3.69
4351 4639 9.283420 CAAAAGAAAGAAGAAAGTCTGAAGTTC 57.717 33.333 0.00 0.00 0.00 3.01
4354 4642 9.448294 CATCAAAAGAAAGAAGAAAGTCTGAAG 57.552 33.333 0.00 0.00 0.00 3.02
4396 4719 2.810887 GCGATGCTGCTGTGACGA 60.811 61.111 0.00 0.00 0.00 4.20
4431 4754 2.432628 GGGAGGTTGCGACGTCAG 60.433 66.667 24.33 9.59 41.32 3.51
4462 4785 1.466025 TTCAGTAAGCACGGGTCGGT 61.466 55.000 0.00 0.00 0.00 4.69
4474 4797 2.602878 GTCGCCGTCAGAATTCAGTAA 58.397 47.619 8.44 0.00 0.00 2.24
4490 4813 2.112297 TGGGACACAAAGGGTCGC 59.888 61.111 9.24 9.24 45.35 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.