Multiple sequence alignment - TraesCS4D01G194800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G194800 chr4D 100.000 5396 0 0 1 5396 337522850 337517455 0.000000e+00 9965.0
1 TraesCS4D01G194800 chr4D 89.431 123 9 4 3443 3563 337519288 337519408 9.360000e-33 152.0
2 TraesCS4D01G194800 chr4D 90.909 66 4 2 3442 3507 319254524 319254461 2.680000e-13 87.9
3 TraesCS4D01G194800 chr4D 85.714 63 9 0 2134 2196 463681461 463681399 3.490000e-07 67.6
4 TraesCS4D01G194800 chr4D 100.000 30 0 0 2151 2180 382329947 382329976 7.550000e-04 56.5
5 TraesCS4D01G194800 chr4B 93.521 3380 155 29 899 4252 416643808 416640467 0.000000e+00 4970.0
6 TraesCS4D01G194800 chr4B 93.598 453 14 6 4712 5158 416639513 416639070 0.000000e+00 662.0
7 TraesCS4D01G194800 chr4B 90.150 467 14 8 4254 4720 416640411 416639977 3.620000e-161 579.0
8 TraesCS4D01G194800 chr4B 94.472 199 6 4 5203 5396 416638965 416638767 8.780000e-78 302.0
9 TraesCS4D01G194800 chr4B 83.959 293 37 7 13 303 416646993 416646709 6.890000e-69 272.0
10 TraesCS4D01G194800 chr4B 87.402 127 8 4 3443 3563 416641156 416641280 7.290000e-29 139.0
11 TraesCS4D01G194800 chr4B 100.000 32 0 0 5158 5189 416639043 416639012 5.840000e-05 60.2
12 TraesCS4D01G194800 chr4A 94.328 1146 48 11 3504 4635 134538666 134539808 0.000000e+00 1740.0
13 TraesCS4D01G194800 chr4A 89.637 1293 60 23 828 2086 134535987 134537239 0.000000e+00 1578.0
14 TraesCS4D01G194800 chr4A 88.612 922 69 15 2232 3132 134537382 134538288 0.000000e+00 1088.0
15 TraesCS4D01G194800 chr4A 96.838 253 5 3 3127 3378 134538374 134538624 2.320000e-113 420.0
16 TraesCS4D01G194800 chr4A 83.553 456 31 16 4716 5158 134539968 134540392 2.360000e-103 387.0
17 TraesCS4D01G194800 chr4A 83.333 324 38 8 3 321 134535573 134535885 8.850000e-73 285.0
18 TraesCS4D01G194800 chr4A 88.235 221 16 2 378 598 615701361 615701151 6.940000e-64 255.0
19 TraesCS4D01G194800 chr6D 86.047 473 34 10 374 823 347404881 347404418 3.780000e-131 479.0
20 TraesCS4D01G194800 chr6D 97.143 35 1 0 3344 3378 175718979 175719013 5.840000e-05 60.2
21 TraesCS4D01G194800 chr6D 92.683 41 2 1 2099 2138 433114672 433114632 2.100000e-04 58.4
22 TraesCS4D01G194800 chr3D 82.090 469 50 12 378 823 114083301 114083758 2.370000e-98 370.0
23 TraesCS4D01G194800 chr3D 90.141 213 20 1 611 823 474662160 474662371 5.320000e-70 276.0
24 TraesCS4D01G194800 chr3D 90.110 91 6 2 2096 2183 374014752 374014662 1.230000e-21 115.0
25 TraesCS4D01G194800 chr3D 97.222 36 1 0 3344 3379 373324977 373325012 1.620000e-05 62.1
26 TraesCS4D01G194800 chr7D 91.827 208 17 0 616 823 619818629 619818836 1.900000e-74 291.0
27 TraesCS4D01G194800 chr7D 89.286 224 14 3 378 600 245404972 245405186 6.890000e-69 272.0
28 TraesCS4D01G194800 chr7D 89.157 83 9 0 2099 2181 549516441 549516523 2.660000e-18 104.0
29 TraesCS4D01G194800 chr7D 82.222 90 9 3 2096 2184 576296132 576296215 2.700000e-08 71.3
30 TraesCS4D01G194800 chr2D 90.141 213 21 0 611 823 139743612 139743824 1.480000e-70 278.0
31 TraesCS4D01G194800 chr2D 88.263 213 23 2 611 823 531966415 531966625 2.490000e-63 254.0
32 TraesCS4D01G194800 chr2D 88.000 75 7 2 2096 2169 430003151 430003224 2.680000e-13 87.9
33 TraesCS4D01G194800 chr2D 89.706 68 5 2 3440 3506 345078512 345078578 9.630000e-13 86.1
34 TraesCS4D01G194800 chr2D 84.615 78 9 3 2110 2186 482662709 482662634 2.080000e-09 75.0
35 TraesCS4D01G194800 chr2B 90.244 205 20 0 611 815 102924202 102924406 8.910000e-68 268.0
36 TraesCS4D01G194800 chr2B 86.957 92 8 3 2091 2180 4837459 4837548 3.440000e-17 100.0
37 TraesCS4D01G194800 chr1B 89.202 213 23 0 611 823 262925938 262926150 3.200000e-67 267.0
38 TraesCS4D01G194800 chr1B 87.793 213 24 1 611 823 61017657 61017867 1.160000e-61 248.0
39 TraesCS4D01G194800 chr1B 85.022 227 20 6 377 600 262926153 262925938 9.100000e-53 219.0
40 TraesCS4D01G194800 chr1B 92.958 71 5 0 2110 2180 68285225 68285295 2.660000e-18 104.0
41 TraesCS4D01G194800 chr1B 93.548 62 3 1 3445 3506 38277626 38277566 2.070000e-14 91.6
42 TraesCS4D01G194800 chr1B 89.041 73 8 0 2110 2182 156850429 156850357 2.070000e-14 91.6
43 TraesCS4D01G194800 chr3B 89.423 208 21 1 617 823 657582861 657583068 1.490000e-65 261.0
44 TraesCS4D01G194800 chr3B 90.566 106 7 1 3453 3555 239920946 239920841 2.620000e-28 137.0
45 TraesCS4D01G194800 chr3B 88.073 109 10 3 3450 3555 239920841 239920949 5.670000e-25 126.0
46 TraesCS4D01G194800 chr3B 97.222 36 1 0 3343 3378 108816073 108816108 1.620000e-05 62.1
47 TraesCS4D01G194800 chr6B 88.106 227 15 4 376 600 126608398 126608614 5.360000e-65 259.0
48 TraesCS4D01G194800 chr6B 85.135 222 23 3 378 599 624466322 624466533 9.100000e-53 219.0
49 TraesCS4D01G194800 chr6B 88.889 72 6 2 3435 3506 15719405 15719474 2.680000e-13 87.9
50 TraesCS4D01G194800 chr6B 92.982 57 4 0 3507 3563 15719467 15719411 3.460000e-12 84.2
51 TraesCS4D01G194800 chrUn 87.013 231 16 6 373 600 176734 176515 1.160000e-61 248.0
52 TraesCS4D01G194800 chr5B 86.977 215 17 4 379 592 476814320 476814116 1.170000e-56 231.0
53 TraesCS4D01G194800 chr5B 87.097 93 10 2 2088 2180 654756541 654756631 2.660000e-18 104.0
54 TraesCS4D01G194800 chr5B 87.356 87 9 2 2095 2180 1421233 1421318 1.240000e-16 99.0
55 TraesCS4D01G194800 chr5B 87.209 86 11 0 2096 2181 144802570 144802655 1.240000e-16 99.0
56 TraesCS4D01G194800 chr5A 95.181 83 2 2 2099 2180 430490872 430490791 4.390000e-26 130.0
57 TraesCS4D01G194800 chr5A 90.323 62 6 0 3507 3568 413419534 413419473 1.250000e-11 82.4
58 TraesCS4D01G194800 chr1D 94.366 71 4 0 2110 2180 180152407 180152477 5.710000e-20 110.0
59 TraesCS4D01G194800 chr1D 86.486 74 8 2 2110 2182 349811372 349811300 4.480000e-11 80.5
60 TraesCS4D01G194800 chr1D 86.486 74 4 5 2096 2166 257365282 257365352 5.800000e-10 76.8
61 TraesCS4D01G194800 chr1D 83.333 72 11 1 2110 2181 15297058 15296988 1.250000e-06 65.8
62 TraesCS4D01G194800 chr1D 97.297 37 1 0 2144 2180 22557790 22557826 4.510000e-06 63.9
63 TraesCS4D01G194800 chr1D 97.222 36 1 0 2149 2184 325484525 325484490 1.620000e-05 62.1
64 TraesCS4D01G194800 chr1D 92.683 41 3 0 2142 2182 95869172 95869212 5.840000e-05 60.2
65 TraesCS4D01G194800 chr1D 97.143 35 1 0 3344 3378 201495065 201495031 5.840000e-05 60.2
66 TraesCS4D01G194800 chr5D 93.750 64 4 0 2110 2173 39101894 39101957 4.450000e-16 97.1
67 TraesCS4D01G194800 chr7A 85.556 90 11 2 2096 2184 667224721 667224809 5.750000e-15 93.5
68 TraesCS4D01G194800 chr7B 94.737 57 2 1 3507 3563 707709604 707709549 2.680000e-13 87.9
69 TraesCS4D01G194800 chr1A 88.732 71 7 1 2110 2180 330769305 330769236 9.630000e-13 86.1
70 TraesCS4D01G194800 chr1A 94.444 54 2 1 2137 2189 241319495 241319548 1.250000e-11 82.4
71 TraesCS4D01G194800 chr6A 97.143 35 1 0 3344 3378 237755219 237755253 5.840000e-05 60.2
72 TraesCS4D01G194800 chr6A 97.143 35 1 0 3344 3378 237755304 237755270 5.840000e-05 60.2
73 TraesCS4D01G194800 chr6A 97.143 35 1 0 3344 3378 237756248 237756282 5.840000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G194800 chr4D 337517455 337522850 5395 True 9965.000000 9965 100.000000 1 5396 1 chr4D.!!$R2 5395
1 TraesCS4D01G194800 chr4B 416638767 416646993 8226 True 1140.866667 4970 92.616667 13 5396 6 chr4B.!!$R1 5383
2 TraesCS4D01G194800 chr4A 134535573 134540392 4819 False 916.333333 1740 89.383500 3 5158 6 chr4A.!!$F1 5155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 593 0.034059 ACACTACACTGTGCAGAGCC 59.966 55.000 14.72 0.0 41.30 4.70 F
597 684 0.036483 TCAATGTGCAGCGCCTAAGA 60.036 50.000 2.29 0.0 0.00 2.10 F
1344 4208 0.038618 CCATCGACGTGGTCAAGACA 60.039 55.000 0.00 0.0 34.46 3.41 F
1700 4580 0.108804 TCCCAGATCGTTCGTGCTTC 60.109 55.000 0.00 0.0 0.00 3.86 F
2277 5165 1.135024 CACCGGCCCTGATTTCATTTG 60.135 52.381 0.00 0.0 0.00 2.32 F
3828 6897 0.678048 GGTCTGGAGCATCACCAACC 60.678 60.000 0.00 0.0 36.95 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 5410 0.770499 TTGGTGCCTGTTCTGGATGA 59.230 50.000 0.00 0.0 0.00 2.92 R
2460 5411 1.475280 CATTGGTGCCTGTTCTGGATG 59.525 52.381 0.00 0.0 0.00 3.51 R
3260 6315 0.861837 GAACACTGCACTTCCAGTCG 59.138 55.000 0.00 0.0 43.85 4.18 R
3389 6445 1.069513 CCTCCGTCTTGGTGTAACACA 59.930 52.381 0.00 0.0 39.98 3.72 R
4219 7288 0.251165 AAGCAGGCGGGTTACACATT 60.251 50.000 0.00 0.0 34.93 2.71 R
5024 8728 0.108585 AGCACCGGAGCTTTTTCTCA 59.891 50.000 21.59 0.0 43.70 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.733960 CGGTCGAGCGTGAGGACA 61.734 66.667 27.67 0.00 32.39 4.02
68 69 7.407337 GCCTATTTTTACTACTGATTTGGTCG 58.593 38.462 0.00 0.00 0.00 4.79
94 95 9.807649 GATAGATCAATGTGCTTTTTGGTAAAT 57.192 29.630 0.00 0.00 0.00 1.40
122 123 6.492007 AAGAAGTGCAAACATATCTCACTG 57.508 37.500 0.00 0.00 37.96 3.66
130 131 5.503683 GCAAACATATCTCACTGCAGCTAAG 60.504 44.000 15.27 8.95 0.00 2.18
136 137 3.926616 TCTCACTGCAGCTAAGTTTACC 58.073 45.455 15.27 0.00 0.00 2.85
143 144 5.048013 ACTGCAGCTAAGTTTACCCAATTTC 60.048 40.000 15.27 0.00 0.00 2.17
145 146 5.048083 TGCAGCTAAGTTTACCCAATTTCTG 60.048 40.000 0.00 0.00 0.00 3.02
146 147 5.183140 GCAGCTAAGTTTACCCAATTTCTGA 59.817 40.000 0.00 0.00 0.00 3.27
147 148 6.294508 GCAGCTAAGTTTACCCAATTTCTGAA 60.295 38.462 0.00 0.00 0.00 3.02
148 149 7.657336 CAGCTAAGTTTACCCAATTTCTGAAA 58.343 34.615 5.15 5.15 0.00 2.69
149 150 8.306761 CAGCTAAGTTTACCCAATTTCTGAAAT 58.693 33.333 9.76 9.76 0.00 2.17
150 151 8.306761 AGCTAAGTTTACCCAATTTCTGAAATG 58.693 33.333 15.80 10.04 0.00 2.32
182 183 1.273606 TGAAAGAGAGGAGAACCGCTG 59.726 52.381 0.00 0.00 45.86 5.18
190 191 2.032681 AGAACCGCTGGCTTGTCC 59.967 61.111 0.00 0.00 0.00 4.02
262 263 1.147473 CCCCGCAAAAGCAAATCAAC 58.853 50.000 0.00 0.00 0.00 3.18
265 266 1.601663 CCGCAAAAGCAAATCAACGGA 60.602 47.619 0.00 0.00 41.86 4.69
266 267 2.327568 CGCAAAAGCAAATCAACGGAT 58.672 42.857 0.00 0.00 34.43 4.18
267 268 2.090967 CGCAAAAGCAAATCAACGGATG 59.909 45.455 0.00 0.00 32.92 3.51
327 414 4.744795 ATCAATCGAAGTAGCAACCTCT 57.255 40.909 0.00 0.00 0.00 3.69
328 415 4.537135 TCAATCGAAGTAGCAACCTCTT 57.463 40.909 0.00 0.00 0.00 2.85
329 416 4.245660 TCAATCGAAGTAGCAACCTCTTG 58.754 43.478 0.00 0.00 0.00 3.02
330 417 2.743636 TCGAAGTAGCAACCTCTTGG 57.256 50.000 0.00 0.00 39.83 3.61
339 426 2.918248 ACCTCTTGGTGCACTGCA 59.082 55.556 17.98 3.98 46.51 4.41
340 427 1.457604 ACCTCTTGGTGCACTGCAT 59.542 52.632 17.98 0.00 46.51 3.96
341 428 0.692476 ACCTCTTGGTGCACTGCATA 59.308 50.000 17.98 0.00 46.51 3.14
342 429 1.339438 ACCTCTTGGTGCACTGCATAG 60.339 52.381 17.98 8.12 46.51 2.23
343 430 0.731417 CTCTTGGTGCACTGCATAGC 59.269 55.000 17.98 3.74 41.91 2.97
344 431 0.677731 TCTTGGTGCACTGCATAGCC 60.678 55.000 17.98 4.59 41.91 3.93
345 432 1.985447 CTTGGTGCACTGCATAGCCG 61.985 60.000 17.98 0.00 41.91 5.52
346 433 3.880846 GGTGCACTGCATAGCCGC 61.881 66.667 17.98 0.00 41.91 6.53
347 434 3.880846 GTGCACTGCATAGCCGCC 61.881 66.667 10.32 0.00 41.91 6.13
348 435 4.407245 TGCACTGCATAGCCGCCA 62.407 61.111 0.00 0.00 31.71 5.69
349 436 3.880846 GCACTGCATAGCCGCCAC 61.881 66.667 0.00 0.00 0.00 5.01
350 437 3.566853 CACTGCATAGCCGCCACG 61.567 66.667 0.00 0.00 0.00 4.94
355 442 4.241999 CATAGCCGCCACGCAAGC 62.242 66.667 0.00 0.00 45.62 4.01
394 481 7.826260 CCGTGTAGGCAAATTTGATAATTTT 57.174 32.000 22.31 1.36 40.97 1.82
395 482 7.674564 CCGTGTAGGCAAATTTGATAATTTTG 58.325 34.615 22.31 4.61 40.97 2.44
396 483 7.543868 CCGTGTAGGCAAATTTGATAATTTTGA 59.456 33.333 22.31 0.00 40.97 2.69
397 484 8.372521 CGTGTAGGCAAATTTGATAATTTTGAC 58.627 33.333 22.31 8.93 40.97 3.18
398 485 8.655970 GTGTAGGCAAATTTGATAATTTTGACC 58.344 33.333 22.31 8.93 40.97 4.02
399 486 8.592809 TGTAGGCAAATTTGATAATTTTGACCT 58.407 29.630 22.31 15.21 40.97 3.85
400 487 7.910441 AGGCAAATTTGATAATTTTGACCTG 57.090 32.000 22.31 0.00 40.97 4.00
401 488 7.452562 AGGCAAATTTGATAATTTTGACCTGT 58.547 30.769 22.31 0.00 40.97 4.00
402 489 7.388500 AGGCAAATTTGATAATTTTGACCTGTG 59.612 33.333 22.31 0.00 40.97 3.66
403 490 7.361116 GGCAAATTTGATAATTTTGACCTGTGG 60.361 37.037 22.31 0.00 40.97 4.17
404 491 7.387397 GCAAATTTGATAATTTTGACCTGTGGA 59.613 33.333 22.31 0.00 40.97 4.02
405 492 9.439500 CAAATTTGATAATTTTGACCTGTGGAT 57.561 29.630 13.08 0.00 40.97 3.41
406 493 9.439500 AAATTTGATAATTTTGACCTGTGGATG 57.561 29.630 0.00 0.00 40.22 3.51
407 494 7.773489 TTTGATAATTTTGACCTGTGGATGA 57.227 32.000 0.00 0.00 0.00 2.92
408 495 7.773489 TTGATAATTTTGACCTGTGGATGAA 57.227 32.000 0.00 0.00 0.00 2.57
409 496 7.773489 TGATAATTTTGACCTGTGGATGAAA 57.227 32.000 0.00 0.00 0.00 2.69
410 497 8.365060 TGATAATTTTGACCTGTGGATGAAAT 57.635 30.769 0.00 0.00 0.00 2.17
411 498 8.469200 TGATAATTTTGACCTGTGGATGAAATC 58.531 33.333 0.00 0.00 44.55 2.17
439 526 8.553459 TTCACAAAATGAACTGCCTTTAAAAA 57.447 26.923 0.00 0.00 42.62 1.94
456 543 3.643159 AAAAATTTCACTCGGCTGACC 57.357 42.857 0.00 0.00 0.00 4.02
457 544 2.568623 AAATTTCACTCGGCTGACCT 57.431 45.000 0.00 0.00 0.00 3.85
458 545 2.568623 AATTTCACTCGGCTGACCTT 57.431 45.000 0.00 0.00 0.00 3.50
459 546 2.568623 ATTTCACTCGGCTGACCTTT 57.431 45.000 0.00 0.00 0.00 3.11
460 547 2.341846 TTTCACTCGGCTGACCTTTT 57.658 45.000 0.00 0.00 0.00 2.27
461 548 2.341846 TTCACTCGGCTGACCTTTTT 57.658 45.000 0.00 0.00 0.00 1.94
462 549 1.593196 TCACTCGGCTGACCTTTTTG 58.407 50.000 0.00 0.00 0.00 2.44
463 550 1.140052 TCACTCGGCTGACCTTTTTGA 59.860 47.619 0.00 0.00 0.00 2.69
464 551 1.532868 CACTCGGCTGACCTTTTTGAG 59.467 52.381 0.00 0.00 0.00 3.02
465 552 1.141053 ACTCGGCTGACCTTTTTGAGT 59.859 47.619 0.00 0.00 29.71 3.41
466 553 1.532868 CTCGGCTGACCTTTTTGAGTG 59.467 52.381 0.00 0.00 0.00 3.51
467 554 0.593128 CGGCTGACCTTTTTGAGTGG 59.407 55.000 0.00 0.00 0.00 4.00
468 555 0.315251 GGCTGACCTTTTTGAGTGGC 59.685 55.000 0.00 0.00 0.00 5.01
469 556 0.040067 GCTGACCTTTTTGAGTGGCG 60.040 55.000 0.00 0.00 0.00 5.69
470 557 0.040067 CTGACCTTTTTGAGTGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
471 558 1.285950 GACCTTTTTGAGTGGCGCC 59.714 57.895 22.73 22.73 0.00 6.53
472 559 2.142357 GACCTTTTTGAGTGGCGCCC 62.142 60.000 26.77 15.80 0.00 6.13
473 560 2.255252 CTTTTTGAGTGGCGCCCG 59.745 61.111 26.77 0.00 0.00 6.13
474 561 2.203224 TTTTTGAGTGGCGCCCGA 60.203 55.556 26.77 2.06 0.00 5.14
475 562 2.458006 CTTTTTGAGTGGCGCCCGAC 62.458 60.000 26.77 17.18 0.00 4.79
476 563 3.758973 TTTTGAGTGGCGCCCGACA 62.759 57.895 26.77 17.83 0.00 4.35
486 573 4.754667 GCCCGACACGAAGACCCC 62.755 72.222 0.00 0.00 0.00 4.95
487 574 3.307906 CCCGACACGAAGACCCCA 61.308 66.667 0.00 0.00 0.00 4.96
488 575 2.048503 CCGACACGAAGACCCCAC 60.049 66.667 0.00 0.00 0.00 4.61
489 576 2.732016 CGACACGAAGACCCCACA 59.268 61.111 0.00 0.00 0.00 4.17
490 577 1.663702 CGACACGAAGACCCCACAC 60.664 63.158 0.00 0.00 0.00 3.82
491 578 1.746517 GACACGAAGACCCCACACT 59.253 57.895 0.00 0.00 0.00 3.55
492 579 0.963962 GACACGAAGACCCCACACTA 59.036 55.000 0.00 0.00 0.00 2.74
493 580 0.677842 ACACGAAGACCCCACACTAC 59.322 55.000 0.00 0.00 0.00 2.73
494 581 0.677288 CACGAAGACCCCACACTACA 59.323 55.000 0.00 0.00 0.00 2.74
495 582 0.677842 ACGAAGACCCCACACTACAC 59.322 55.000 0.00 0.00 0.00 2.90
496 583 0.966920 CGAAGACCCCACACTACACT 59.033 55.000 0.00 0.00 0.00 3.55
497 584 1.336887 CGAAGACCCCACACTACACTG 60.337 57.143 0.00 0.00 0.00 3.66
498 585 1.692519 GAAGACCCCACACTACACTGT 59.307 52.381 0.00 0.00 0.00 3.55
499 586 1.048601 AGACCCCACACTACACTGTG 58.951 55.000 6.19 6.19 41.19 3.66
500 587 0.602905 GACCCCACACTACACTGTGC 60.603 60.000 7.90 0.00 40.33 4.57
501 588 1.341913 ACCCCACACTACACTGTGCA 61.342 55.000 7.90 0.00 40.33 4.57
502 589 0.603707 CCCCACACTACACTGTGCAG 60.604 60.000 7.90 7.13 40.33 4.41
503 590 0.392706 CCCACACTACACTGTGCAGA 59.607 55.000 14.72 0.00 40.33 4.26
504 591 1.606480 CCCACACTACACTGTGCAGAG 60.606 57.143 14.72 9.74 40.33 3.35
505 592 1.143305 CACACTACACTGTGCAGAGC 58.857 55.000 14.72 0.00 41.30 4.09
506 593 0.034059 ACACTACACTGTGCAGAGCC 59.966 55.000 14.72 0.00 41.30 4.70
507 594 0.319728 CACTACACTGTGCAGAGCCT 59.680 55.000 14.72 0.00 0.00 4.58
508 595 0.319728 ACTACACTGTGCAGAGCCTG 59.680 55.000 14.72 5.32 34.12 4.85
509 596 0.605083 CTACACTGTGCAGAGCCTGA 59.395 55.000 11.42 0.00 32.44 3.86
510 597 0.318441 TACACTGTGCAGAGCCTGAC 59.682 55.000 11.42 3.23 32.44 3.51
511 598 1.370437 CACTGTGCAGAGCCTGACT 59.630 57.895 11.42 0.00 32.44 3.41
512 599 0.949588 CACTGTGCAGAGCCTGACTG 60.950 60.000 11.42 0.00 38.27 3.51
513 600 1.117749 ACTGTGCAGAGCCTGACTGA 61.118 55.000 11.42 0.00 37.54 3.41
514 601 0.669932 CTGTGCAGAGCCTGACTGAC 60.670 60.000 0.00 0.00 37.54 3.51
515 602 1.368950 GTGCAGAGCCTGACTGACA 59.631 57.895 6.40 0.00 37.54 3.58
516 603 0.669932 GTGCAGAGCCTGACTGACAG 60.670 60.000 0.00 0.00 45.36 3.51
523 610 3.117171 CTGACTGACAGGCGCTGC 61.117 66.667 7.64 0.00 42.39 5.25
524 611 3.871248 CTGACTGACAGGCGCTGCA 62.871 63.158 7.64 5.71 42.39 4.41
525 612 3.117171 GACTGACAGGCGCTGCAG 61.117 66.667 10.11 10.11 39.57 4.41
526 613 4.694233 ACTGACAGGCGCTGCAGG 62.694 66.667 17.12 6.85 38.73 4.85
552 639 2.202810 GCCTAGCCAGCGTCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
553 640 2.496817 CCTAGCCAGCGTCTCACC 59.503 66.667 0.00 0.00 0.00 4.02
554 641 2.496817 CTAGCCAGCGTCTCACCC 59.503 66.667 0.00 0.00 0.00 4.61
555 642 3.417275 CTAGCCAGCGTCTCACCCG 62.417 68.421 0.00 0.00 0.00 5.28
558 645 3.461773 CCAGCGTCTCACCCGGAT 61.462 66.667 0.73 0.00 0.00 4.18
559 646 2.202797 CAGCGTCTCACCCGGATG 60.203 66.667 0.73 0.00 0.00 3.51
560 647 2.362503 AGCGTCTCACCCGGATGA 60.363 61.111 0.73 0.00 0.00 2.92
561 648 1.758514 AGCGTCTCACCCGGATGAT 60.759 57.895 0.00 0.00 0.00 2.45
562 649 1.300233 GCGTCTCACCCGGATGATC 60.300 63.158 0.00 0.00 0.00 2.92
563 650 1.364171 CGTCTCACCCGGATGATCC 59.636 63.158 0.00 0.08 0.00 3.36
564 651 1.391933 CGTCTCACCCGGATGATCCA 61.392 60.000 12.67 0.00 35.91 3.41
565 652 0.830648 GTCTCACCCGGATGATCCAA 59.169 55.000 12.67 0.00 35.91 3.53
566 653 1.209504 GTCTCACCCGGATGATCCAAA 59.790 52.381 12.67 0.00 35.91 3.28
567 654 1.912731 TCTCACCCGGATGATCCAAAA 59.087 47.619 12.67 0.00 35.91 2.44
568 655 2.307392 TCTCACCCGGATGATCCAAAAA 59.693 45.455 12.67 0.00 35.91 1.94
590 677 7.510428 AAAATTATTAAGTCAATGTGCAGCG 57.490 32.000 0.00 0.00 0.00 5.18
591 678 2.549633 ATTAAGTCAATGTGCAGCGC 57.450 45.000 0.00 0.00 0.00 5.92
592 679 0.521291 TTAAGTCAATGTGCAGCGCC 59.479 50.000 2.29 0.00 0.00 6.53
593 680 0.321564 TAAGTCAATGTGCAGCGCCT 60.322 50.000 2.29 0.00 0.00 5.52
594 681 0.321564 AAGTCAATGTGCAGCGCCTA 60.322 50.000 2.29 0.00 0.00 3.93
595 682 0.321564 AGTCAATGTGCAGCGCCTAA 60.322 50.000 2.29 0.00 0.00 2.69
596 683 0.097674 GTCAATGTGCAGCGCCTAAG 59.902 55.000 2.29 0.00 0.00 2.18
597 684 0.036483 TCAATGTGCAGCGCCTAAGA 60.036 50.000 2.29 0.00 0.00 2.10
598 685 0.376152 CAATGTGCAGCGCCTAAGAG 59.624 55.000 2.29 0.00 0.00 2.85
599 686 1.372087 AATGTGCAGCGCCTAAGAGC 61.372 55.000 2.29 0.00 39.42 4.09
600 687 3.198489 GTGCAGCGCCTAAGAGCC 61.198 66.667 2.29 0.00 40.09 4.70
601 688 3.393970 TGCAGCGCCTAAGAGCCT 61.394 61.111 2.29 0.00 40.09 4.58
602 689 2.894387 GCAGCGCCTAAGAGCCTG 60.894 66.667 2.29 0.00 40.09 4.85
603 690 2.894387 CAGCGCCTAAGAGCCTGC 60.894 66.667 2.29 0.00 40.09 4.85
604 691 3.393970 AGCGCCTAAGAGCCTGCA 61.394 61.111 2.29 0.00 40.09 4.41
605 692 2.894387 GCGCCTAAGAGCCTGCAG 60.894 66.667 6.78 6.78 31.75 4.41
606 693 2.894387 CGCCTAAGAGCCTGCAGC 60.894 66.667 8.66 3.91 44.25 5.25
615 702 3.270839 GCCTGCAGCGATGCTCTC 61.271 66.667 27.55 11.28 36.40 3.20
616 703 2.186125 CCTGCAGCGATGCTCTCA 59.814 61.111 27.55 5.07 36.40 3.27
617 704 1.883544 CCTGCAGCGATGCTCTCAG 60.884 63.158 27.55 15.27 36.40 3.35
618 705 1.883544 CTGCAGCGATGCTCTCAGG 60.884 63.158 27.55 6.11 36.40 3.86
619 706 3.270839 GCAGCGATGCTCTCAGGC 61.271 66.667 20.22 0.00 36.40 4.85
620 707 2.960659 CAGCGATGCTCTCAGGCG 60.961 66.667 0.00 0.00 36.40 5.52
621 708 3.456365 AGCGATGCTCTCAGGCGT 61.456 61.111 0.00 0.00 30.62 5.68
622 709 2.510238 GCGATGCTCTCAGGCGTT 60.510 61.111 0.00 0.00 34.52 4.84
623 710 2.806856 GCGATGCTCTCAGGCGTTG 61.807 63.158 0.00 0.00 36.12 4.10
624 711 2.806856 CGATGCTCTCAGGCGTTGC 61.807 63.158 0.00 0.00 34.52 4.17
625 712 1.742880 GATGCTCTCAGGCGTTGCA 60.743 57.895 0.00 0.00 38.05 4.08
626 713 1.975363 GATGCTCTCAGGCGTTGCAC 61.975 60.000 0.00 0.00 36.44 4.57
627 714 2.666190 GCTCTCAGGCGTTGCACA 60.666 61.111 0.00 0.00 0.00 4.57
628 715 2.959357 GCTCTCAGGCGTTGCACAC 61.959 63.158 0.00 0.00 0.00 3.82
629 716 1.301244 CTCTCAGGCGTTGCACACT 60.301 57.895 0.00 0.00 0.00 3.55
630 717 1.563435 CTCTCAGGCGTTGCACACTG 61.563 60.000 0.00 0.00 0.00 3.66
631 718 1.595109 CTCAGGCGTTGCACACTGA 60.595 57.895 8.11 8.11 37.61 3.41
632 719 1.835483 CTCAGGCGTTGCACACTGAC 61.835 60.000 5.10 0.00 35.24 3.51
633 720 1.889105 CAGGCGTTGCACACTGACT 60.889 57.895 0.00 0.00 32.86 3.41
634 721 1.153168 AGGCGTTGCACACTGACTT 60.153 52.632 0.00 0.00 0.00 3.01
635 722 0.105964 AGGCGTTGCACACTGACTTA 59.894 50.000 0.00 0.00 0.00 2.24
636 723 0.512952 GGCGTTGCACACTGACTTAG 59.487 55.000 0.00 0.00 0.00 2.18
637 724 1.217882 GCGTTGCACACTGACTTAGT 58.782 50.000 0.00 0.00 41.36 2.24
638 725 2.400399 GCGTTGCACACTGACTTAGTA 58.600 47.619 0.00 0.00 37.60 1.82
639 726 2.798283 GCGTTGCACACTGACTTAGTAA 59.202 45.455 0.00 0.00 37.60 2.24
640 727 3.432252 GCGTTGCACACTGACTTAGTAAT 59.568 43.478 0.00 0.00 37.60 1.89
641 728 4.084013 GCGTTGCACACTGACTTAGTAATT 60.084 41.667 0.00 0.00 37.60 1.40
642 729 5.560183 GCGTTGCACACTGACTTAGTAATTT 60.560 40.000 0.00 0.00 37.60 1.82
643 730 6.427150 CGTTGCACACTGACTTAGTAATTTT 58.573 36.000 0.00 0.00 37.60 1.82
644 731 6.910433 CGTTGCACACTGACTTAGTAATTTTT 59.090 34.615 0.00 0.00 37.60 1.94
645 732 7.097047 CGTTGCACACTGACTTAGTAATTTTTG 60.097 37.037 0.00 0.00 37.60 2.44
646 733 6.734137 TGCACACTGACTTAGTAATTTTTGG 58.266 36.000 0.00 0.00 37.60 3.28
647 734 6.149633 GCACACTGACTTAGTAATTTTTGGG 58.850 40.000 0.00 0.00 37.60 4.12
648 735 6.149633 CACACTGACTTAGTAATTTTTGGGC 58.850 40.000 0.00 0.00 37.60 5.36
649 736 5.830991 ACACTGACTTAGTAATTTTTGGGCA 59.169 36.000 0.00 0.00 37.60 5.36
650 737 6.016276 ACACTGACTTAGTAATTTTTGGGCAG 60.016 38.462 0.00 0.00 37.60 4.85
651 738 6.016276 CACTGACTTAGTAATTTTTGGGCAGT 60.016 38.462 1.26 1.26 37.60 4.40
652 739 6.549736 ACTGACTTAGTAATTTTTGGGCAGTT 59.450 34.615 1.26 0.00 38.04 3.16
653 740 6.977213 TGACTTAGTAATTTTTGGGCAGTTC 58.023 36.000 0.00 0.00 0.00 3.01
654 741 6.009115 ACTTAGTAATTTTTGGGCAGTTCG 57.991 37.500 0.00 0.00 0.00 3.95
655 742 3.934457 AGTAATTTTTGGGCAGTTCGG 57.066 42.857 0.00 0.00 0.00 4.30
656 743 2.560981 AGTAATTTTTGGGCAGTTCGGG 59.439 45.455 0.00 0.00 0.00 5.14
657 744 0.684535 AATTTTTGGGCAGTTCGGGG 59.315 50.000 0.00 0.00 0.00 5.73
658 745 0.471022 ATTTTTGGGCAGTTCGGGGT 60.471 50.000 0.00 0.00 0.00 4.95
659 746 1.395826 TTTTTGGGCAGTTCGGGGTG 61.396 55.000 0.00 0.00 0.00 4.61
660 747 4.966787 TTGGGCAGTTCGGGGTGC 62.967 66.667 0.00 0.00 39.08 5.01
663 750 4.778143 GGCAGTTCGGGGTGCGAT 62.778 66.667 0.00 0.00 40.82 4.58
664 751 3.499737 GCAGTTCGGGGTGCGATG 61.500 66.667 0.00 0.00 0.00 3.84
665 752 2.047274 CAGTTCGGGGTGCGATGT 60.047 61.111 0.00 0.00 0.00 3.06
666 753 1.671054 CAGTTCGGGGTGCGATGTT 60.671 57.895 0.00 0.00 0.00 2.71
667 754 1.671054 AGTTCGGGGTGCGATGTTG 60.671 57.895 0.00 0.00 0.00 3.33
668 755 2.359354 TTCGGGGTGCGATGTTGG 60.359 61.111 0.00 0.00 0.00 3.77
672 759 3.443045 GGGTGCGATGTTGGCCAG 61.443 66.667 5.11 0.00 0.00 4.85
673 760 2.359850 GGTGCGATGTTGGCCAGA 60.360 61.111 5.11 0.00 0.00 3.86
674 761 2.690778 GGTGCGATGTTGGCCAGAC 61.691 63.158 5.11 8.34 0.00 3.51
675 762 2.741985 TGCGATGTTGGCCAGACG 60.742 61.111 5.11 11.73 0.00 4.18
676 763 2.742372 GCGATGTTGGCCAGACGT 60.742 61.111 5.11 9.02 32.13 4.34
677 764 3.027170 GCGATGTTGGCCAGACGTG 62.027 63.158 5.11 0.00 32.13 4.49
678 765 1.667830 CGATGTTGGCCAGACGTGT 60.668 57.895 5.11 0.00 0.00 4.49
679 766 0.389296 CGATGTTGGCCAGACGTGTA 60.389 55.000 5.11 0.00 0.00 2.90
680 767 1.359848 GATGTTGGCCAGACGTGTAG 58.640 55.000 5.11 0.00 0.00 2.74
681 768 0.673644 ATGTTGGCCAGACGTGTAGC 60.674 55.000 5.11 0.00 0.00 3.58
683 770 4.735132 TGGCCAGACGTGTAGCGC 62.735 66.667 0.00 0.00 46.11 5.92
685 772 4.436998 GCCAGACGTGTAGCGCCT 62.437 66.667 2.29 0.00 46.11 5.52
687 774 2.258591 CAGACGTGTAGCGCCTGT 59.741 61.111 2.29 0.00 44.32 4.00
688 775 1.801913 CAGACGTGTAGCGCCTGTC 60.802 63.158 2.29 5.33 44.32 3.51
689 776 2.257371 GACGTGTAGCGCCTGTCA 59.743 61.111 2.29 0.00 46.11 3.58
690 777 1.801913 GACGTGTAGCGCCTGTCAG 60.802 63.158 2.29 0.00 46.11 3.51
691 778 2.258591 CGTGTAGCGCCTGTCAGT 59.741 61.111 2.29 0.00 0.00 3.41
692 779 1.801913 CGTGTAGCGCCTGTCAGTC 60.802 63.158 2.29 0.00 0.00 3.51
693 780 1.289066 GTGTAGCGCCTGTCAGTCA 59.711 57.895 2.29 0.00 0.00 3.41
694 781 0.734253 GTGTAGCGCCTGTCAGTCAG 60.734 60.000 2.29 0.00 43.27 3.51
695 782 0.893727 TGTAGCGCCTGTCAGTCAGA 60.894 55.000 2.29 0.00 46.27 3.27
696 783 0.456995 GTAGCGCCTGTCAGTCAGAC 60.457 60.000 2.29 0.00 46.27 3.51
704 791 2.971997 GTCAGTCAGACGTTGCACA 58.028 52.632 0.00 0.00 37.53 4.57
705 792 0.855349 GTCAGTCAGACGTTGCACAG 59.145 55.000 0.00 0.00 37.53 3.66
706 793 0.459899 TCAGTCAGACGTTGCACAGT 59.540 50.000 0.00 0.00 0.00 3.55
707 794 0.578683 CAGTCAGACGTTGCACAGTG 59.421 55.000 0.00 0.00 0.00 3.66
708 795 0.175760 AGTCAGACGTTGCACAGTGT 59.824 50.000 1.61 0.00 0.00 3.55
709 796 1.407618 AGTCAGACGTTGCACAGTGTA 59.592 47.619 1.61 0.00 0.00 2.90
710 797 1.787155 GTCAGACGTTGCACAGTGTAG 59.213 52.381 1.61 0.00 0.00 2.74
711 798 1.407618 TCAGACGTTGCACAGTGTAGT 59.592 47.619 1.61 0.00 0.00 2.73
712 799 1.522676 CAGACGTTGCACAGTGTAGTG 59.477 52.381 1.61 0.00 42.37 2.74
713 800 1.136305 AGACGTTGCACAGTGTAGTGT 59.864 47.619 1.61 0.00 41.52 3.55
715 802 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
716 803 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
717 804 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
718 805 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
719 806 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
720 807 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
721 808 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
722 809 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
723 810 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
724 811 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
725 812 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
726 813 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
727 814 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
739 826 4.337060 CGTGTCGGACGCCACTCA 62.337 66.667 15.48 0.00 42.21 3.41
740 827 2.028484 GTGTCGGACGCCACTCAA 59.972 61.111 10.54 0.00 0.00 3.02
741 828 1.593209 GTGTCGGACGCCACTCAAA 60.593 57.895 10.54 0.00 0.00 2.69
742 829 1.144276 TGTCGGACGCCACTCAAAA 59.856 52.632 3.34 0.00 0.00 2.44
743 830 0.462225 TGTCGGACGCCACTCAAAAA 60.462 50.000 3.34 0.00 0.00 1.94
763 850 6.705863 AAAAAGTCAGCTGAGTGAAATTCT 57.294 33.333 24.53 9.04 0.00 2.40
764 851 6.705863 AAAAGTCAGCTGAGTGAAATTCTT 57.294 33.333 24.53 14.50 0.00 2.52
765 852 6.705863 AAAGTCAGCTGAGTGAAATTCTTT 57.294 33.333 24.53 19.09 0.00 2.52
766 853 6.705863 AAGTCAGCTGAGTGAAATTCTTTT 57.294 33.333 24.53 2.00 0.00 2.27
767 854 7.807977 AAGTCAGCTGAGTGAAATTCTTTTA 57.192 32.000 24.53 0.00 0.00 1.52
768 855 7.432350 AGTCAGCTGAGTGAAATTCTTTTAG 57.568 36.000 23.30 0.00 0.00 1.85
769 856 7.220030 AGTCAGCTGAGTGAAATTCTTTTAGA 58.780 34.615 23.30 0.00 0.00 2.10
770 857 7.716998 AGTCAGCTGAGTGAAATTCTTTTAGAA 59.283 33.333 23.30 0.00 38.78 2.10
771 858 8.345565 GTCAGCTGAGTGAAATTCTTTTAGAAA 58.654 33.333 18.89 0.00 37.82 2.52
772 859 8.345565 TCAGCTGAGTGAAATTCTTTTAGAAAC 58.654 33.333 13.74 0.00 37.82 2.78
773 860 8.131100 CAGCTGAGTGAAATTCTTTTAGAAACA 58.869 33.333 8.42 0.00 37.82 2.83
774 861 8.348507 AGCTGAGTGAAATTCTTTTAGAAACAG 58.651 33.333 0.00 0.00 37.82 3.16
775 862 8.131731 GCTGAGTGAAATTCTTTTAGAAACAGT 58.868 33.333 0.00 0.00 37.82 3.55
823 910 9.883142 TTCAGAGGTTAAAATTGTCAAATTTGT 57.117 25.926 17.47 0.00 43.63 2.83
824 911 9.528018 TCAGAGGTTAAAATTGTCAAATTTGTC 57.472 29.630 17.47 12.75 43.63 3.18
825 912 8.479280 CAGAGGTTAAAATTGTCAAATTTGTCG 58.521 33.333 17.47 0.00 43.63 4.35
826 913 8.410141 AGAGGTTAAAATTGTCAAATTTGTCGA 58.590 29.630 17.47 12.34 43.63 4.20
827 914 8.574196 AGGTTAAAATTGTCAAATTTGTCGAG 57.426 30.769 17.47 0.00 43.63 4.04
828 915 8.194769 AGGTTAAAATTGTCAAATTTGTCGAGT 58.805 29.630 17.47 8.73 43.63 4.18
829 916 8.265998 GGTTAAAATTGTCAAATTTGTCGAGTG 58.734 33.333 17.47 0.00 43.63 3.51
830 917 6.826893 AAAATTGTCAAATTTGTCGAGTGG 57.173 33.333 17.47 0.00 43.63 4.00
831 918 3.347958 TTGTCAAATTTGTCGAGTGGC 57.652 42.857 17.47 0.00 0.00 5.01
832 919 2.293170 TGTCAAATTTGTCGAGTGGCA 58.707 42.857 17.47 0.00 0.00 4.92
833 920 2.032799 TGTCAAATTTGTCGAGTGGCAC 59.967 45.455 17.47 10.29 0.00 5.01
834 921 2.032799 GTCAAATTTGTCGAGTGGCACA 59.967 45.455 21.41 0.00 0.00 4.57
853 940 3.465403 CCTCCGTGGCTCAGAGGG 61.465 72.222 10.37 0.00 42.98 4.30
855 942 4.704103 TCCGTGGCTCAGAGGGCT 62.704 66.667 0.00 0.00 0.00 5.19
856 943 4.154347 CCGTGGCTCAGAGGGCTC 62.154 72.222 0.00 0.00 0.00 4.70
858 945 4.154347 GTGGCTCAGAGGGCTCCG 62.154 72.222 0.00 0.00 0.00 4.63
900 3437 0.105964 CTCTGACGTGTGGGTCCAAA 59.894 55.000 0.00 0.00 36.07 3.28
901 3438 0.105964 TCTGACGTGTGGGTCCAAAG 59.894 55.000 0.00 0.00 36.07 2.77
975 3838 1.633945 ACCATAGACCAAACCCTGACC 59.366 52.381 0.00 0.00 0.00 4.02
1012 3875 1.414919 ACAAGTACGTGCCCTTCTTCA 59.585 47.619 8.83 0.00 0.00 3.02
1016 3879 2.567615 AGTACGTGCCCTTCTTCATTCT 59.432 45.455 0.00 0.00 0.00 2.40
1344 4208 0.038618 CCATCGACGTGGTCAAGACA 60.039 55.000 0.00 0.00 34.46 3.41
1633 4497 1.134699 TCGAGGTCAGATTGCACATCC 60.135 52.381 0.00 0.00 0.00 3.51
1643 4513 4.461781 CAGATTGCACATCCCTCTTCTTTT 59.538 41.667 0.00 0.00 0.00 2.27
1700 4580 0.108804 TCCCAGATCGTTCGTGCTTC 60.109 55.000 0.00 0.00 0.00 3.86
1731 4611 6.427150 GTGAGTACGATGTGTTCACATTTTT 58.573 36.000 17.64 9.11 38.36 1.94
1772 4652 3.181456 ACAGCTCTAGATGATTCCTTGCC 60.181 47.826 1.62 0.00 35.09 4.52
1794 4674 5.292834 GCCGGGATCTTAAAGTGTAGTTTAC 59.707 44.000 2.18 0.00 0.00 2.01
1799 4679 8.416329 GGGATCTTAAAGTGTAGTTTACCGATA 58.584 37.037 0.00 0.00 0.00 2.92
1800 4680 9.242477 GGATCTTAAAGTGTAGTTTACCGATAC 57.758 37.037 0.00 0.00 0.00 2.24
1817 4697 4.707563 CGATACAAAAGTTGCATCGTTCA 58.292 39.130 13.10 0.00 46.56 3.18
1818 4698 5.143660 CGATACAAAAGTTGCATCGTTCAA 58.856 37.500 13.10 0.00 46.56 2.69
1819 4699 5.623264 CGATACAAAAGTTGCATCGTTCAAA 59.377 36.000 13.10 0.00 46.56 2.69
1820 4700 6.305399 CGATACAAAAGTTGCATCGTTCAAAT 59.695 34.615 13.10 0.00 46.56 2.32
1821 4701 7.148983 CGATACAAAAGTTGCATCGTTCAAATT 60.149 33.333 13.10 0.00 46.56 1.82
1822 4702 9.123709 GATACAAAAGTTGCATCGTTCAAATTA 57.876 29.630 0.00 0.00 32.40 1.40
1824 4704 6.074356 ACAAAAGTTGCATCGTTCAAATTAGC 60.074 34.615 0.00 0.00 32.40 3.09
1825 4705 4.764679 AGTTGCATCGTTCAAATTAGCA 57.235 36.364 0.00 0.00 0.00 3.49
1827 4707 6.435430 AGTTGCATCGTTCAAATTAGCATA 57.565 33.333 0.00 0.00 0.00 3.14
1828 4708 7.031226 AGTTGCATCGTTCAAATTAGCATAT 57.969 32.000 0.00 0.00 0.00 1.78
1829 4709 7.134815 AGTTGCATCGTTCAAATTAGCATATC 58.865 34.615 0.00 0.00 0.00 1.63
1830 4710 6.866010 TGCATCGTTCAAATTAGCATATCT 57.134 33.333 0.00 0.00 0.00 1.98
1831 4711 6.661669 TGCATCGTTCAAATTAGCATATCTG 58.338 36.000 0.00 0.00 0.00 2.90
1887 4767 4.911610 CGGCAGCTATTTAATATTGTGTGC 59.088 41.667 0.00 0.00 0.00 4.57
1888 4768 5.505489 CGGCAGCTATTTAATATTGTGTGCA 60.505 40.000 0.00 0.00 0.00 4.57
1918 4798 2.229543 TGATGCATTTCTGACAACCTGC 59.770 45.455 0.00 0.00 0.00 4.85
2092 4975 6.582636 TCTTGTTAATGATGTCCGCTAGAAT 58.417 36.000 0.00 0.00 0.00 2.40
2093 4976 6.479990 TCTTGTTAATGATGTCCGCTAGAATG 59.520 38.462 0.00 0.00 0.00 2.67
2107 4993 6.153000 TCCGCTAGAATGATATTACCTCCTTC 59.847 42.308 0.00 0.00 0.00 3.46
2277 5165 1.135024 CACCGGCCCTGATTTCATTTG 60.135 52.381 0.00 0.00 0.00 2.32
2278 5166 1.272425 ACCGGCCCTGATTTCATTTGA 60.272 47.619 0.00 0.00 0.00 2.69
2279 5167 2.034124 CCGGCCCTGATTTCATTTGAT 58.966 47.619 0.00 0.00 0.00 2.57
2280 5168 2.035066 CCGGCCCTGATTTCATTTGATC 59.965 50.000 0.00 0.00 0.00 2.92
2427 5378 6.925165 AGGTAGAAATAAAAGTCACGAACGAA 59.075 34.615 0.14 0.00 0.00 3.85
2448 5399 5.164061 CGAATTGCTGTTTACATCAAAAGCC 60.164 40.000 3.59 0.00 35.88 4.35
2458 5409 4.090761 ACATCAAAAGCCAGACAGAAGA 57.909 40.909 0.00 0.00 0.00 2.87
2459 5410 4.660168 ACATCAAAAGCCAGACAGAAGAT 58.340 39.130 0.00 0.00 0.00 2.40
2460 5411 4.699257 ACATCAAAAGCCAGACAGAAGATC 59.301 41.667 0.00 0.00 0.00 2.75
2579 5533 1.973281 CCTCCTGCGCCAACATTGT 60.973 57.895 4.18 0.00 0.00 2.71
2588 5542 3.194861 GCGCCAACATTGTCAGTCTATA 58.805 45.455 0.00 0.00 0.00 1.31
2681 5644 2.779429 TATTGGTGGTATCTCCCGGA 57.221 50.000 0.73 0.00 34.77 5.14
2751 5714 2.048444 AGATAGCAGCCACACCAATG 57.952 50.000 0.00 0.00 0.00 2.82
2764 5727 5.815222 GCCACACCAATGTTAAGAAACTTTT 59.185 36.000 0.00 0.00 36.72 2.27
2791 5754 7.384115 TGTCTCTTCCTACAGAAACATTAAACG 59.616 37.037 0.00 0.00 32.88 3.60
3060 6023 6.672218 TGAATATTGGTTCTGAGGTTCCTCTA 59.328 38.462 18.07 5.60 34.42 2.43
3103 6066 5.769662 CCTGCCTAATTATACTGCATGGAAA 59.230 40.000 0.00 0.00 0.00 3.13
3300 6355 6.476706 TGTTCTATAGTTGAATCATCAGTGCG 59.523 38.462 0.00 0.00 36.78 5.34
3301 6356 4.984785 TCTATAGTTGAATCATCAGTGCGC 59.015 41.667 0.00 0.00 36.78 6.09
3391 6447 5.590530 TTTTCAGTTACACCAAGCATTGT 57.409 34.783 0.00 0.00 46.99 2.71
3392 6448 4.566545 TTCAGTTACACCAAGCATTGTG 57.433 40.909 0.00 0.00 46.99 3.33
3393 6449 3.550820 TCAGTTACACCAAGCATTGTGT 58.449 40.909 4.15 4.15 46.99 3.72
3394 6450 3.951037 TCAGTTACACCAAGCATTGTGTT 59.049 39.130 4.01 0.00 46.99 3.32
3397 6453 4.884744 AGTTACACCAAGCATTGTGTTACA 59.115 37.500 14.96 0.00 46.99 2.41
3398 6454 3.708563 ACACCAAGCATTGTGTTACAC 57.291 42.857 8.76 8.76 46.99 2.90
3400 6456 2.360483 CACCAAGCATTGTGTTACACCA 59.640 45.455 13.29 1.88 46.99 4.17
3401 6457 3.027412 ACCAAGCATTGTGTTACACCAA 58.973 40.909 13.29 7.78 46.99 3.67
3406 6471 2.350388 GCATTGTGTTACACCAAGACGG 60.350 50.000 13.29 0.00 42.50 4.79
3427 6492 7.830201 AGACGGAGGTAGTATTAGATATTCCAG 59.170 40.741 0.00 0.00 0.00 3.86
3428 6493 6.890814 ACGGAGGTAGTATTAGATATTCCAGG 59.109 42.308 0.00 0.00 0.00 4.45
3431 6496 8.973182 GGAGGTAGTATTAGATATTCCAGGAAG 58.027 40.741 8.20 0.00 0.00 3.46
3445 6510 5.137412 TCCAGGAAGGAAAAGAGGAAAAA 57.863 39.130 0.00 0.00 45.65 1.94
3447 6512 6.143206 TCCAGGAAGGAAAAGAGGAAAAATT 58.857 36.000 0.00 0.00 45.65 1.82
3448 6513 7.302184 TCCAGGAAGGAAAAGAGGAAAAATTA 58.698 34.615 0.00 0.00 45.65 1.40
3449 6514 7.955750 TCCAGGAAGGAAAAGAGGAAAAATTAT 59.044 33.333 0.00 0.00 45.65 1.28
3450 6515 9.255029 CCAGGAAGGAAAAGAGGAAAAATTATA 57.745 33.333 0.00 0.00 41.22 0.98
3497 6562 6.903534 AGACCTTTTAGAGATTCCACTATGGA 59.096 38.462 0.00 0.00 46.61 3.41
3594 6663 7.112122 TGTTGCTGTACCTTCTCATATTCATT 58.888 34.615 0.00 0.00 0.00 2.57
3668 6737 5.738783 GCTTGTTTTGTTGAGGGAATTGCTA 60.739 40.000 0.00 0.00 0.00 3.49
3741 6810 2.226962 AAGGACTAAGCACGGACCTA 57.773 50.000 0.00 0.00 0.00 3.08
3771 6840 2.819984 AAGGGCCCATACACTGTGCG 62.820 60.000 27.56 0.00 0.00 5.34
3828 6897 0.678048 GGTCTGGAGCATCACCAACC 60.678 60.000 0.00 0.00 36.95 3.77
3912 6981 3.176411 TCTCTGGAAGAAGCATGAAGGA 58.824 45.455 0.00 0.00 46.34 3.36
4002 7071 3.932483 ACCGGGCCTTTCGACGTT 61.932 61.111 6.32 0.00 0.00 3.99
4219 7288 2.287608 CGAACATATCTGCAGTCGGCTA 60.288 50.000 14.67 0.00 45.15 3.93
4221 7290 4.310769 GAACATATCTGCAGTCGGCTAAT 58.689 43.478 14.67 0.00 45.15 1.73
4370 7496 7.497595 CAATGAGCCCATGTACTTTAGTAGTA 58.502 38.462 0.00 0.00 34.13 1.82
4444 7574 7.851228 TGACTGACTGTTATGGATAAGAATGT 58.149 34.615 0.00 0.00 0.00 2.71
4469 7603 6.393171 TCTGATGACTGACTGTTATGTGAAG 58.607 40.000 0.00 0.00 0.00 3.02
4540 7674 1.410083 GCCATGGGCCAGATGTAAGAA 60.410 52.381 15.13 0.00 44.06 2.52
4687 7873 3.388024 TCAACTTTCACTCAGTAGGCAGT 59.612 43.478 0.00 0.00 0.00 4.40
4720 8407 3.726557 AGATTCAGCAACCTCATGGAA 57.273 42.857 0.00 0.00 37.04 3.53
4747 8435 2.998949 GACATGGGGGTCCCTGAC 59.001 66.667 8.15 0.00 45.70 3.51
4847 8535 2.048597 TTGCGCACTACCTGACCG 60.049 61.111 11.12 0.00 0.00 4.79
4871 8569 2.357465 CCTCAGAAGGCATCCAATTCCA 60.357 50.000 0.00 0.00 35.37 3.53
4970 8674 3.405831 TCTCCTTCTGTTGTTGCAGATG 58.594 45.455 0.00 0.00 43.99 2.90
4994 8698 0.400213 TCGTTCAGCCATTCAACCCT 59.600 50.000 0.00 0.00 0.00 4.34
4995 8699 0.523072 CGTTCAGCCATTCAACCCTG 59.477 55.000 0.00 0.00 0.00 4.45
4996 8700 1.620822 GTTCAGCCATTCAACCCTGT 58.379 50.000 0.00 0.00 0.00 4.00
4997 8701 1.541588 GTTCAGCCATTCAACCCTGTC 59.458 52.381 0.00 0.00 0.00 3.51
4998 8702 0.038166 TCAGCCATTCAACCCTGTCC 59.962 55.000 0.00 0.00 0.00 4.02
4999 8703 0.251297 CAGCCATTCAACCCTGTCCA 60.251 55.000 0.00 0.00 0.00 4.02
5020 8724 2.144078 TCCTCGCCACAAACCCTCA 61.144 57.895 0.00 0.00 0.00 3.86
5021 8725 1.672356 CCTCGCCACAAACCCTCAG 60.672 63.158 0.00 0.00 0.00 3.35
5022 8726 2.281484 TCGCCACAAACCCTCAGC 60.281 61.111 0.00 0.00 0.00 4.26
5024 8728 1.898574 CGCCACAAACCCTCAGCTT 60.899 57.895 0.00 0.00 0.00 3.74
5025 8729 1.662044 GCCACAAACCCTCAGCTTG 59.338 57.895 0.00 0.00 0.00 4.01
5026 8730 0.823356 GCCACAAACCCTCAGCTTGA 60.823 55.000 0.00 0.00 0.00 3.02
5027 8731 1.242076 CCACAAACCCTCAGCTTGAG 58.758 55.000 6.28 6.28 43.91 3.02
5043 8747 0.108585 TGAGAAAAAGCTCCGGTGCT 59.891 50.000 24.87 24.87 46.40 4.40
5189 8922 3.706373 GAGGAACGGAGCCCAGCA 61.706 66.667 0.00 0.00 0.00 4.41
5190 8923 3.672295 GAGGAACGGAGCCCAGCAG 62.672 68.421 0.00 0.00 0.00 4.24
5193 8926 4.269523 AACGGAGCCCAGCAGCAA 62.270 61.111 0.00 0.00 34.23 3.91
5220 8986 3.721035 TCGGTAGATGCATGAATCAGTG 58.279 45.455 16.33 3.03 0.00 3.66
5221 8987 3.132824 TCGGTAGATGCATGAATCAGTGT 59.867 43.478 16.33 0.00 0.00 3.55
5222 8988 3.873361 CGGTAGATGCATGAATCAGTGTT 59.127 43.478 16.33 0.00 0.00 3.32
5223 8989 5.049828 CGGTAGATGCATGAATCAGTGTTA 58.950 41.667 16.33 0.00 0.00 2.41
5224 8990 5.698089 CGGTAGATGCATGAATCAGTGTTAT 59.302 40.000 16.33 0.00 0.00 1.89
5225 8991 6.868339 CGGTAGATGCATGAATCAGTGTTATA 59.132 38.462 16.33 0.00 0.00 0.98
5226 8992 7.148738 CGGTAGATGCATGAATCAGTGTTATAC 60.149 40.741 16.33 7.33 0.00 1.47
5227 8993 7.875041 GGTAGATGCATGAATCAGTGTTATACT 59.125 37.037 16.33 0.00 41.36 2.12
5229 8995 8.743085 AGATGCATGAATCAGTGTTATACTTT 57.257 30.769 16.33 0.00 37.60 2.66
5230 8996 8.834465 AGATGCATGAATCAGTGTTATACTTTC 58.166 33.333 16.33 0.00 37.60 2.62
5244 9015 0.620556 ACTTTCCTCGATGGCCACAT 59.379 50.000 8.16 0.00 40.85 3.21
5261 9032 4.381932 GCCACATATGTTTCTTTCCCCTTG 60.382 45.833 5.37 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.429141 TCCTCACGCTCGACCGAC 61.429 66.667 7.21 0.00 0.00 4.79
1 2 3.429141 GTCCTCACGCTCGACCGA 61.429 66.667 7.21 0.00 0.00 4.69
2 3 2.921538 GATGTCCTCACGCTCGACCG 62.922 65.000 0.00 0.00 0.00 4.79
3 4 1.226717 GATGTCCTCACGCTCGACC 60.227 63.158 0.00 0.00 0.00 4.79
4 5 0.109272 TTGATGTCCTCACGCTCGAC 60.109 55.000 0.00 0.00 32.17 4.20
5 6 0.817654 ATTGATGTCCTCACGCTCGA 59.182 50.000 0.00 0.00 32.17 4.04
6 7 2.492019 TATTGATGTCCTCACGCTCG 57.508 50.000 0.00 0.00 32.17 5.03
7 8 7.426929 AAATTATATTGATGTCCTCACGCTC 57.573 36.000 0.00 0.00 32.17 5.03
8 9 7.807977 AAAATTATATTGATGTCCTCACGCT 57.192 32.000 0.00 0.00 32.17 5.07
9 10 8.774586 ACTAAAATTATATTGATGTCCTCACGC 58.225 33.333 0.00 0.00 32.17 5.34
68 69 9.807649 ATTTACCAAAAAGCACATTGATCTATC 57.192 29.630 0.00 0.00 0.00 2.08
87 88 9.606631 ATGTTTGCACTTCTTTTTAATTTACCA 57.393 25.926 0.00 0.00 0.00 3.25
94 95 9.677567 GTGAGATATGTTTGCACTTCTTTTTAA 57.322 29.630 0.00 0.00 0.00 1.52
122 123 5.183140 TCAGAAATTGGGTAAACTTAGCTGC 59.817 40.000 0.00 0.00 0.00 5.25
136 137 7.229106 ACCCACATTTTTCATTTCAGAAATTGG 59.771 33.333 5.58 8.47 37.35 3.16
143 144 6.985645 TCTTTCACCCACATTTTTCATTTCAG 59.014 34.615 0.00 0.00 0.00 3.02
145 146 7.209475 TCTCTTTCACCCACATTTTTCATTTC 58.791 34.615 0.00 0.00 0.00 2.17
146 147 7.123355 TCTCTTTCACCCACATTTTTCATTT 57.877 32.000 0.00 0.00 0.00 2.32
147 148 6.239402 CCTCTCTTTCACCCACATTTTTCATT 60.239 38.462 0.00 0.00 0.00 2.57
148 149 5.244626 CCTCTCTTTCACCCACATTTTTCAT 59.755 40.000 0.00 0.00 0.00 2.57
149 150 4.584325 CCTCTCTTTCACCCACATTTTTCA 59.416 41.667 0.00 0.00 0.00 2.69
150 151 4.827284 TCCTCTCTTTCACCCACATTTTTC 59.173 41.667 0.00 0.00 0.00 2.29
182 183 4.135306 GGCTAATTTAGTAGGGACAAGCC 58.865 47.826 5.38 0.00 40.11 4.35
190 191 4.765856 TCTCTAGGCGGCTAATTTAGTAGG 59.234 45.833 20.17 5.04 0.00 3.18
262 263 1.937846 CGAACCGTCGCTACATCCG 60.938 63.158 0.00 0.00 41.08 4.18
327 414 2.039974 CGGCTATGCAGTGCACCAA 61.040 57.895 22.44 8.23 43.04 3.67
328 415 2.436469 CGGCTATGCAGTGCACCA 60.436 61.111 22.44 10.62 43.04 4.17
329 416 3.880846 GCGGCTATGCAGTGCACC 61.881 66.667 22.44 16.47 43.04 5.01
330 417 3.880846 GGCGGCTATGCAGTGCAC 61.881 66.667 22.44 9.40 43.04 4.57
331 418 4.407245 TGGCGGCTATGCAGTGCA 62.407 61.111 22.22 22.22 44.86 4.57
332 419 3.880846 GTGGCGGCTATGCAGTGC 61.881 66.667 8.58 8.58 36.28 4.40
333 420 3.566853 CGTGGCGGCTATGCAGTG 61.567 66.667 11.43 0.00 36.28 3.66
337 424 4.241999 CTTGCGTGGCGGCTATGC 62.242 66.667 21.85 21.85 0.00 3.14
338 425 4.241999 GCTTGCGTGGCGGCTATG 62.242 66.667 11.43 0.00 0.00 2.23
346 433 3.043713 TTGCTCTCGCTTGCGTGG 61.044 61.111 14.70 9.17 36.97 4.94
347 434 2.171940 GTTGCTCTCGCTTGCGTG 59.828 61.111 14.70 12.39 36.97 5.34
348 435 3.044305 GGTTGCTCTCGCTTGCGT 61.044 61.111 14.70 0.00 36.97 5.24
349 436 3.793144 GGGTTGCTCTCGCTTGCG 61.793 66.667 8.87 8.87 36.97 4.85
350 437 3.793144 CGGGTTGCTCTCGCTTGC 61.793 66.667 0.00 0.00 36.97 4.01
351 438 3.121030 CCGGGTTGCTCTCGCTTG 61.121 66.667 0.00 0.00 38.93 4.01
352 439 4.394712 CCCGGGTTGCTCTCGCTT 62.395 66.667 14.18 0.00 38.93 4.68
361 448 4.770874 CCTACACGGCCCGGGTTG 62.771 72.222 19.92 16.10 42.45 3.77
379 466 8.830201 TCCACAGGTCAAAATTATCAAATTTG 57.170 30.769 12.15 12.15 43.04 2.32
380 467 9.439500 CATCCACAGGTCAAAATTATCAAATTT 57.561 29.630 0.00 0.00 45.20 1.82
381 468 8.814931 TCATCCACAGGTCAAAATTATCAAATT 58.185 29.630 0.00 0.00 36.87 1.82
382 469 8.365060 TCATCCACAGGTCAAAATTATCAAAT 57.635 30.769 0.00 0.00 0.00 2.32
383 470 7.773489 TCATCCACAGGTCAAAATTATCAAA 57.227 32.000 0.00 0.00 0.00 2.69
384 471 7.773489 TTCATCCACAGGTCAAAATTATCAA 57.227 32.000 0.00 0.00 0.00 2.57
385 472 7.773489 TTTCATCCACAGGTCAAAATTATCA 57.227 32.000 0.00 0.00 0.00 2.15
386 473 8.469200 TGATTTCATCCACAGGTCAAAATTATC 58.531 33.333 0.00 0.00 0.00 1.75
388 475 7.773489 TGATTTCATCCACAGGTCAAAATTA 57.227 32.000 0.00 0.00 0.00 1.40
389 476 6.669125 TGATTTCATCCACAGGTCAAAATT 57.331 33.333 0.00 0.00 0.00 1.82
390 477 6.862469 ATGATTTCATCCACAGGTCAAAAT 57.138 33.333 0.00 0.00 28.78 1.82
391 478 6.669125 AATGATTTCATCCACAGGTCAAAA 57.331 33.333 0.00 0.00 35.10 2.44
392 479 6.267242 TGAAATGATTTCATCCACAGGTCAAA 59.733 34.615 16.04 0.00 44.21 2.69
393 480 5.774184 TGAAATGATTTCATCCACAGGTCAA 59.226 36.000 16.04 0.00 44.21 3.18
394 481 5.323581 TGAAATGATTTCATCCACAGGTCA 58.676 37.500 16.04 0.00 44.21 4.02
395 482 5.902613 TGAAATGATTTCATCCACAGGTC 57.097 39.130 16.04 0.00 44.21 3.85
414 501 8.553459 TTTTTAAAGGCAGTTCATTTTGTGAA 57.447 26.923 0.00 0.00 44.36 3.18
436 523 3.222603 AGGTCAGCCGAGTGAAATTTTT 58.777 40.909 0.00 0.00 40.50 1.94
437 524 2.863809 AGGTCAGCCGAGTGAAATTTT 58.136 42.857 0.00 0.00 40.50 1.82
438 525 2.568623 AGGTCAGCCGAGTGAAATTT 57.431 45.000 0.00 0.00 40.50 1.82
439 526 2.568623 AAGGTCAGCCGAGTGAAATT 57.431 45.000 0.00 0.00 40.50 1.82
440 527 2.568623 AAAGGTCAGCCGAGTGAAAT 57.431 45.000 0.00 0.00 40.50 2.17
441 528 2.341846 AAAAGGTCAGCCGAGTGAAA 57.658 45.000 0.00 0.00 40.50 2.69
442 529 1.946768 CAAAAAGGTCAGCCGAGTGAA 59.053 47.619 0.00 0.00 40.50 3.18
443 530 1.140052 TCAAAAAGGTCAGCCGAGTGA 59.860 47.619 0.00 0.00 40.50 3.41
444 531 1.532868 CTCAAAAAGGTCAGCCGAGTG 59.467 52.381 0.00 0.00 40.50 3.51
445 532 1.141053 ACTCAAAAAGGTCAGCCGAGT 59.859 47.619 0.00 0.00 40.50 4.18
446 533 1.532868 CACTCAAAAAGGTCAGCCGAG 59.467 52.381 0.00 0.00 40.50 4.63
447 534 1.593196 CACTCAAAAAGGTCAGCCGA 58.407 50.000 0.00 0.00 40.50 5.54
448 535 0.593128 CCACTCAAAAAGGTCAGCCG 59.407 55.000 0.00 0.00 40.50 5.52
449 536 0.315251 GCCACTCAAAAAGGTCAGCC 59.685 55.000 0.00 0.00 0.00 4.85
450 537 0.040067 CGCCACTCAAAAAGGTCAGC 60.040 55.000 0.00 0.00 0.00 4.26
451 538 0.040067 GCGCCACTCAAAAAGGTCAG 60.040 55.000 0.00 0.00 0.00 3.51
452 539 1.452145 GGCGCCACTCAAAAAGGTCA 61.452 55.000 24.80 0.00 0.00 4.02
453 540 1.285950 GGCGCCACTCAAAAAGGTC 59.714 57.895 24.80 0.00 0.00 3.85
454 541 2.200337 GGGCGCCACTCAAAAAGGT 61.200 57.895 30.85 0.00 0.00 3.50
455 542 2.650778 GGGCGCCACTCAAAAAGG 59.349 61.111 30.85 0.00 0.00 3.11
456 543 2.255252 CGGGCGCCACTCAAAAAG 59.745 61.111 30.85 3.27 0.00 2.27
457 544 2.203224 TCGGGCGCCACTCAAAAA 60.203 55.556 30.85 0.05 0.00 1.94
458 545 2.975799 GTCGGGCGCCACTCAAAA 60.976 61.111 30.85 1.26 0.00 2.44
459 546 4.243008 TGTCGGGCGCCACTCAAA 62.243 61.111 30.85 5.09 0.00 2.69
460 547 4.980805 GTGTCGGGCGCCACTCAA 62.981 66.667 30.85 6.35 0.00 3.02
469 556 4.754667 GGGGTCTTCGTGTCGGGC 62.755 72.222 0.00 0.00 0.00 6.13
470 557 3.307906 TGGGGTCTTCGTGTCGGG 61.308 66.667 0.00 0.00 0.00 5.14
471 558 2.048503 GTGGGGTCTTCGTGTCGG 60.049 66.667 0.00 0.00 0.00 4.79
472 559 1.663702 GTGTGGGGTCTTCGTGTCG 60.664 63.158 0.00 0.00 0.00 4.35
473 560 0.963962 TAGTGTGGGGTCTTCGTGTC 59.036 55.000 0.00 0.00 0.00 3.67
474 561 0.677842 GTAGTGTGGGGTCTTCGTGT 59.322 55.000 0.00 0.00 0.00 4.49
475 562 0.677288 TGTAGTGTGGGGTCTTCGTG 59.323 55.000 0.00 0.00 0.00 4.35
476 563 0.677842 GTGTAGTGTGGGGTCTTCGT 59.322 55.000 0.00 0.00 0.00 3.85
477 564 0.966920 AGTGTAGTGTGGGGTCTTCG 59.033 55.000 0.00 0.00 0.00 3.79
478 565 1.692519 ACAGTGTAGTGTGGGGTCTTC 59.307 52.381 0.00 0.00 0.00 2.87
479 566 1.416401 CACAGTGTAGTGTGGGGTCTT 59.584 52.381 11.17 0.00 43.56 3.01
480 567 1.048601 CACAGTGTAGTGTGGGGTCT 58.951 55.000 11.17 0.00 43.56 3.85
481 568 0.602905 GCACAGTGTAGTGTGGGGTC 60.603 60.000 18.52 1.81 46.73 4.46
482 569 1.341913 TGCACAGTGTAGTGTGGGGT 61.342 55.000 18.52 0.00 46.73 4.95
483 570 0.603707 CTGCACAGTGTAGTGTGGGG 60.604 60.000 18.52 0.00 46.73 4.96
484 571 0.392706 TCTGCACAGTGTAGTGTGGG 59.607 55.000 17.26 0.00 46.73 4.61
485 572 1.788258 CTCTGCACAGTGTAGTGTGG 58.212 55.000 17.26 6.03 46.73 4.17
487 574 0.034059 GGCTCTGCACAGTGTAGTGT 59.966 55.000 17.26 0.00 41.52 3.55
488 575 0.319728 AGGCTCTGCACAGTGTAGTG 59.680 55.000 17.26 15.77 42.37 2.74
489 576 0.319728 CAGGCTCTGCACAGTGTAGT 59.680 55.000 17.26 0.00 31.74 2.73
490 577 0.605083 TCAGGCTCTGCACAGTGTAG 59.395 55.000 12.26 12.26 0.00 2.74
491 578 0.318441 GTCAGGCTCTGCACAGTGTA 59.682 55.000 1.61 0.00 0.00 2.90
492 579 1.070445 GTCAGGCTCTGCACAGTGT 59.930 57.895 1.61 0.00 0.00 3.55
493 580 0.949588 CAGTCAGGCTCTGCACAGTG 60.950 60.000 0.00 0.00 0.00 3.66
494 581 1.117749 TCAGTCAGGCTCTGCACAGT 61.118 55.000 0.00 0.00 33.48 3.55
495 582 0.669932 GTCAGTCAGGCTCTGCACAG 60.670 60.000 0.00 0.00 33.48 3.66
496 583 1.368950 GTCAGTCAGGCTCTGCACA 59.631 57.895 0.00 0.00 33.48 4.57
497 584 0.669932 CTGTCAGTCAGGCTCTGCAC 60.670 60.000 0.00 0.30 40.23 4.57
498 585 1.670015 CTGTCAGTCAGGCTCTGCA 59.330 57.895 0.00 0.00 40.23 4.41
499 586 4.594367 CTGTCAGTCAGGCTCTGC 57.406 61.111 0.00 0.00 40.23 4.26
506 593 3.117171 GCAGCGCCTGTCAGTCAG 61.117 66.667 2.29 0.00 43.27 3.51
507 594 3.871248 CTGCAGCGCCTGTCAGTCA 62.871 63.158 2.29 0.00 33.94 3.41
508 595 3.117171 CTGCAGCGCCTGTCAGTC 61.117 66.667 2.29 0.00 33.94 3.51
509 596 4.694233 CCTGCAGCGCCTGTCAGT 62.694 66.667 8.66 0.00 35.49 3.41
535 622 2.202810 GTGAGACGCTGGCTAGGC 60.203 66.667 9.85 9.85 0.00 3.93
536 623 2.496817 GGTGAGACGCTGGCTAGG 59.503 66.667 0.00 0.00 0.00 3.02
537 624 2.496817 GGGTGAGACGCTGGCTAG 59.503 66.667 0.00 0.00 0.00 3.42
538 625 3.449227 CGGGTGAGACGCTGGCTA 61.449 66.667 0.00 0.00 0.00 3.93
541 628 3.461773 ATCCGGGTGAGACGCTGG 61.462 66.667 0.00 0.00 0.00 4.85
542 629 2.021068 ATCATCCGGGTGAGACGCTG 62.021 60.000 24.15 0.00 0.00 5.18
543 630 1.739338 GATCATCCGGGTGAGACGCT 61.739 60.000 24.15 5.36 0.00 5.07
544 631 1.300233 GATCATCCGGGTGAGACGC 60.300 63.158 24.15 8.63 0.00 5.19
545 632 1.364171 GGATCATCCGGGTGAGACG 59.636 63.158 24.15 0.00 0.00 4.18
546 633 0.830648 TTGGATCATCCGGGTGAGAC 59.169 55.000 24.15 17.98 40.17 3.36
547 634 1.578897 TTTGGATCATCCGGGTGAGA 58.421 50.000 24.15 6.66 40.17 3.27
548 635 2.418368 TTTTGGATCATCCGGGTGAG 57.582 50.000 24.15 0.00 40.17 3.51
549 636 2.889170 TTTTTGGATCATCCGGGTGA 57.111 45.000 22.11 22.11 40.17 4.02
565 652 7.411804 GCGCTGCACATTGACTTAATAATTTTT 60.412 33.333 0.00 0.00 0.00 1.94
566 653 6.034898 GCGCTGCACATTGACTTAATAATTTT 59.965 34.615 0.00 0.00 0.00 1.82
567 654 5.516339 GCGCTGCACATTGACTTAATAATTT 59.484 36.000 0.00 0.00 0.00 1.82
568 655 5.036737 GCGCTGCACATTGACTTAATAATT 58.963 37.500 0.00 0.00 0.00 1.40
569 656 4.498009 GGCGCTGCACATTGACTTAATAAT 60.498 41.667 7.64 0.00 0.00 1.28
570 657 3.181501 GGCGCTGCACATTGACTTAATAA 60.182 43.478 7.64 0.00 0.00 1.40
571 658 2.354510 GGCGCTGCACATTGACTTAATA 59.645 45.455 7.64 0.00 0.00 0.98
572 659 1.133025 GGCGCTGCACATTGACTTAAT 59.867 47.619 7.64 0.00 0.00 1.40
573 660 0.521291 GGCGCTGCACATTGACTTAA 59.479 50.000 7.64 0.00 0.00 1.85
574 661 0.321564 AGGCGCTGCACATTGACTTA 60.322 50.000 7.64 0.00 0.00 2.24
575 662 0.321564 TAGGCGCTGCACATTGACTT 60.322 50.000 7.64 0.00 0.00 3.01
576 663 0.321564 TTAGGCGCTGCACATTGACT 60.322 50.000 7.64 0.00 0.00 3.41
577 664 0.097674 CTTAGGCGCTGCACATTGAC 59.902 55.000 7.64 0.00 0.00 3.18
578 665 0.036483 TCTTAGGCGCTGCACATTGA 60.036 50.000 7.64 0.00 0.00 2.57
579 666 0.376152 CTCTTAGGCGCTGCACATTG 59.624 55.000 7.64 0.00 0.00 2.82
580 667 1.372087 GCTCTTAGGCGCTGCACATT 61.372 55.000 7.64 0.00 0.00 2.71
581 668 1.817099 GCTCTTAGGCGCTGCACAT 60.817 57.895 7.64 0.00 0.00 3.21
582 669 2.434884 GCTCTTAGGCGCTGCACA 60.435 61.111 7.64 0.00 0.00 4.57
583 670 3.198489 GGCTCTTAGGCGCTGCAC 61.198 66.667 7.64 0.00 0.00 4.57
584 671 3.393970 AGGCTCTTAGGCGCTGCA 61.394 61.111 7.64 0.00 46.58 4.41
585 672 2.894387 CAGGCTCTTAGGCGCTGC 60.894 66.667 7.64 2.46 46.58 5.25
586 673 2.894387 GCAGGCTCTTAGGCGCTG 60.894 66.667 7.64 0.00 46.58 5.18
587 674 3.382803 CTGCAGGCTCTTAGGCGCT 62.383 63.158 7.64 0.00 46.58 5.92
588 675 2.894387 CTGCAGGCTCTTAGGCGC 60.894 66.667 5.57 0.00 46.58 6.53
589 676 2.894387 GCTGCAGGCTCTTAGGCG 60.894 66.667 17.12 0.00 46.58 5.52
590 677 2.657102 ATCGCTGCAGGCTCTTAGGC 62.657 60.000 17.12 0.00 41.73 3.93
591 678 0.879400 CATCGCTGCAGGCTCTTAGG 60.879 60.000 17.12 0.00 39.13 2.69
592 679 2.602738 CATCGCTGCAGGCTCTTAG 58.397 57.895 17.12 0.00 39.13 2.18
593 680 4.842292 CATCGCTGCAGGCTCTTA 57.158 55.556 17.12 0.00 39.13 2.10
603 690 2.960659 CGCCTGAGAGCATCGCTG 60.961 66.667 0.00 0.00 39.88 5.18
604 691 3.011635 AACGCCTGAGAGCATCGCT 62.012 57.895 0.00 0.00 43.88 4.93
605 692 2.510238 AACGCCTGAGAGCATCGC 60.510 61.111 0.00 0.00 42.67 4.58
606 693 2.806856 GCAACGCCTGAGAGCATCG 61.807 63.158 0.00 0.00 42.67 3.84
607 694 1.742880 TGCAACGCCTGAGAGCATC 60.743 57.895 0.00 0.00 0.00 3.91
608 695 2.037136 GTGCAACGCCTGAGAGCAT 61.037 57.895 0.00 0.00 37.56 3.79
609 696 2.666190 GTGCAACGCCTGAGAGCA 60.666 61.111 0.00 0.00 0.00 4.26
610 697 2.666190 TGTGCAACGCCTGAGAGC 60.666 61.111 0.00 0.00 42.39 4.09
611 698 3.248029 GTGTGCAACGCCTGAGAG 58.752 61.111 0.00 0.00 42.76 3.20
619 706 5.591643 AATTACTAAGTCAGTGTGCAACG 57.408 39.130 0.00 0.00 42.39 4.10
620 707 7.167468 CCAAAAATTACTAAGTCAGTGTGCAAC 59.833 37.037 0.00 0.00 38.24 4.17
621 708 7.199766 CCAAAAATTACTAAGTCAGTGTGCAA 58.800 34.615 0.00 0.00 38.24 4.08
622 709 6.238897 CCCAAAAATTACTAAGTCAGTGTGCA 60.239 38.462 0.00 0.00 38.24 4.57
623 710 6.149633 CCCAAAAATTACTAAGTCAGTGTGC 58.850 40.000 0.00 0.00 38.24 4.57
624 711 6.149633 GCCCAAAAATTACTAAGTCAGTGTG 58.850 40.000 0.00 0.00 38.24 3.82
625 712 5.830991 TGCCCAAAAATTACTAAGTCAGTGT 59.169 36.000 0.00 0.00 38.24 3.55
626 713 6.016276 ACTGCCCAAAAATTACTAAGTCAGTG 60.016 38.462 0.00 0.00 38.24 3.66
627 714 6.068670 ACTGCCCAAAAATTACTAAGTCAGT 58.931 36.000 0.00 0.00 41.62 3.41
628 715 6.575162 ACTGCCCAAAAATTACTAAGTCAG 57.425 37.500 0.00 0.00 0.00 3.51
629 716 6.293735 CGAACTGCCCAAAAATTACTAAGTCA 60.294 38.462 0.00 0.00 0.00 3.41
630 717 6.084277 CGAACTGCCCAAAAATTACTAAGTC 58.916 40.000 0.00 0.00 0.00 3.01
631 718 5.048294 CCGAACTGCCCAAAAATTACTAAGT 60.048 40.000 0.00 0.00 0.00 2.24
632 719 5.399013 CCGAACTGCCCAAAAATTACTAAG 58.601 41.667 0.00 0.00 0.00 2.18
633 720 4.218852 CCCGAACTGCCCAAAAATTACTAA 59.781 41.667 0.00 0.00 0.00 2.24
634 721 3.759618 CCCGAACTGCCCAAAAATTACTA 59.240 43.478 0.00 0.00 0.00 1.82
635 722 2.560981 CCCGAACTGCCCAAAAATTACT 59.439 45.455 0.00 0.00 0.00 2.24
636 723 2.353307 CCCCGAACTGCCCAAAAATTAC 60.353 50.000 0.00 0.00 0.00 1.89
637 724 1.896465 CCCCGAACTGCCCAAAAATTA 59.104 47.619 0.00 0.00 0.00 1.40
638 725 0.684535 CCCCGAACTGCCCAAAAATT 59.315 50.000 0.00 0.00 0.00 1.82
639 726 0.471022 ACCCCGAACTGCCCAAAAAT 60.471 50.000 0.00 0.00 0.00 1.82
640 727 1.075896 ACCCCGAACTGCCCAAAAA 60.076 52.632 0.00 0.00 0.00 1.94
641 728 1.830408 CACCCCGAACTGCCCAAAA 60.830 57.895 0.00 0.00 0.00 2.44
642 729 2.203422 CACCCCGAACTGCCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
643 730 4.966787 GCACCCCGAACTGCCCAA 62.967 66.667 0.00 0.00 0.00 4.12
655 742 3.443045 CTGGCCAACATCGCACCC 61.443 66.667 7.01 0.00 0.00 4.61
656 743 2.359850 TCTGGCCAACATCGCACC 60.360 61.111 7.01 0.00 0.00 5.01
657 744 2.870372 GTCTGGCCAACATCGCAC 59.130 61.111 7.01 0.00 0.00 5.34
658 745 2.741985 CGTCTGGCCAACATCGCA 60.742 61.111 7.01 0.00 0.00 5.10
659 746 2.742372 ACGTCTGGCCAACATCGC 60.742 61.111 7.01 0.00 32.32 4.58
660 747 0.389296 TACACGTCTGGCCAACATCG 60.389 55.000 7.01 11.66 34.25 3.84
661 748 1.359848 CTACACGTCTGGCCAACATC 58.640 55.000 7.01 0.00 0.00 3.06
662 749 0.673644 GCTACACGTCTGGCCAACAT 60.674 55.000 7.01 0.00 0.00 2.71
663 750 1.301401 GCTACACGTCTGGCCAACA 60.301 57.895 7.01 0.00 0.00 3.33
664 751 2.380410 CGCTACACGTCTGGCCAAC 61.380 63.158 7.01 7.45 36.87 3.77
665 752 2.048597 CGCTACACGTCTGGCCAA 60.049 61.111 7.01 0.00 36.87 4.52
666 753 4.735132 GCGCTACACGTCTGGCCA 62.735 66.667 4.71 4.71 46.11 5.36
673 760 2.258591 CTGACAGGCGCTACACGT 59.741 61.111 7.64 0.00 46.11 4.49
675 762 0.734253 CTGACTGACAGGCGCTACAC 60.734 60.000 7.64 0.00 42.39 2.90
676 763 0.893727 TCTGACTGACAGGCGCTACA 60.894 55.000 7.64 1.72 45.76 2.74
677 764 0.456995 GTCTGACTGACAGGCGCTAC 60.457 60.000 7.64 0.00 45.76 3.58
678 765 1.883732 GTCTGACTGACAGGCGCTA 59.116 57.895 7.64 0.00 45.76 4.26
679 766 2.653702 GTCTGACTGACAGGCGCT 59.346 61.111 7.64 0.00 45.76 5.92
682 769 1.560860 GCAACGTCTGACTGACAGGC 61.561 60.000 7.51 3.88 46.51 4.85
683 770 0.249447 TGCAACGTCTGACTGACAGG 60.249 55.000 7.51 2.85 45.60 4.00
684 771 0.855349 GTGCAACGTCTGACTGACAG 59.145 55.000 12.33 0.00 45.60 3.51
685 772 0.174617 TGTGCAACGTCTGACTGACA 59.825 50.000 12.33 3.10 45.60 3.58
686 773 0.855349 CTGTGCAACGTCTGACTGAC 59.145 55.000 6.21 2.52 42.39 3.51
687 774 0.459899 ACTGTGCAACGTCTGACTGA 59.540 50.000 6.21 0.00 42.39 3.41
688 775 0.578683 CACTGTGCAACGTCTGACTG 59.421 55.000 6.21 0.00 42.39 3.51
689 776 0.175760 ACACTGTGCAACGTCTGACT 59.824 50.000 7.90 0.00 42.39 3.41
690 777 1.787155 CTACACTGTGCAACGTCTGAC 59.213 52.381 7.90 0.00 42.39 3.51
691 778 1.407618 ACTACACTGTGCAACGTCTGA 59.592 47.619 7.90 0.00 42.39 3.27
692 779 1.522676 CACTACACTGTGCAACGTCTG 59.477 52.381 7.90 0.00 42.39 3.51
693 780 1.136305 ACACTACACTGTGCAACGTCT 59.864 47.619 7.90 0.00 42.39 4.18
694 781 1.257936 CACACTACACTGTGCAACGTC 59.742 52.381 7.90 0.00 42.39 4.34
695 782 1.286501 CACACTACACTGTGCAACGT 58.713 50.000 7.90 0.00 42.39 3.99
696 783 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
697 784 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
698 785 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
699 786 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
700 787 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
701 788 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
702 789 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
703 790 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
704 791 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
705 792 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
706 793 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
707 794 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
708 795 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
709 796 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
710 797 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
724 811 0.462225 TTTTTGAGTGGCGTCCGACA 60.462 50.000 0.00 0.00 0.00 4.35
725 812 2.313267 TTTTTGAGTGGCGTCCGAC 58.687 52.632 0.00 0.00 0.00 4.79
726 813 4.859400 TTTTTGAGTGGCGTCCGA 57.141 50.000 0.00 0.00 0.00 4.55
740 827 6.705863 AGAATTTCACTCAGCTGACTTTTT 57.294 33.333 13.74 2.00 0.00 1.94
741 828 6.705863 AAGAATTTCACTCAGCTGACTTTT 57.294 33.333 13.74 0.89 0.00 2.27
742 829 6.705863 AAAGAATTTCACTCAGCTGACTTT 57.294 33.333 13.74 14.68 27.08 2.66
743 830 6.705863 AAAAGAATTTCACTCAGCTGACTT 57.294 33.333 13.74 9.18 37.28 3.01
744 831 7.220030 TCTAAAAGAATTTCACTCAGCTGACT 58.780 34.615 13.74 2.52 37.28 3.41
745 832 7.426929 TCTAAAAGAATTTCACTCAGCTGAC 57.573 36.000 13.74 0.00 37.28 3.51
746 833 8.345565 GTTTCTAAAAGAATTTCACTCAGCTGA 58.654 33.333 17.19 17.19 37.28 4.26
747 834 8.131100 TGTTTCTAAAAGAATTTCACTCAGCTG 58.869 33.333 7.63 7.63 37.28 4.24
748 835 8.225603 TGTTTCTAAAAGAATTTCACTCAGCT 57.774 30.769 0.00 0.00 37.28 4.24
749 836 8.131731 ACTGTTTCTAAAAGAATTTCACTCAGC 58.868 33.333 0.00 0.00 37.28 4.26
797 884 9.883142 ACAAATTTGACAATTTTAACCTCTGAA 57.117 25.926 24.64 0.00 40.09 3.02
798 885 9.528018 GACAAATTTGACAATTTTAACCTCTGA 57.472 29.630 24.64 0.00 40.09 3.27
799 886 8.479280 CGACAAATTTGACAATTTTAACCTCTG 58.521 33.333 24.64 0.00 40.09 3.35
800 887 8.410141 TCGACAAATTTGACAATTTTAACCTCT 58.590 29.630 24.64 0.00 40.09 3.69
801 888 8.568732 TCGACAAATTTGACAATTTTAACCTC 57.431 30.769 24.64 5.93 40.09 3.85
802 889 8.194769 ACTCGACAAATTTGACAATTTTAACCT 58.805 29.630 24.64 0.00 40.09 3.50
803 890 8.265998 CACTCGACAAATTTGACAATTTTAACC 58.734 33.333 24.64 1.49 40.09 2.85
804 891 8.265998 CCACTCGACAAATTTGACAATTTTAAC 58.734 33.333 24.64 5.09 40.09 2.01
805 892 7.043059 GCCACTCGACAAATTTGACAATTTTAA 60.043 33.333 24.64 0.00 40.09 1.52
806 893 6.419413 GCCACTCGACAAATTTGACAATTTTA 59.581 34.615 24.64 0.90 40.09 1.52
807 894 5.234116 GCCACTCGACAAATTTGACAATTTT 59.766 36.000 24.64 0.00 40.09 1.82
808 895 4.744631 GCCACTCGACAAATTTGACAATTT 59.255 37.500 24.64 0.44 42.37 1.82
809 896 4.202101 TGCCACTCGACAAATTTGACAATT 60.202 37.500 24.64 1.23 33.72 2.32
810 897 3.317711 TGCCACTCGACAAATTTGACAAT 59.682 39.130 24.64 1.64 0.00 2.71
811 898 2.685388 TGCCACTCGACAAATTTGACAA 59.315 40.909 24.64 2.98 0.00 3.18
812 899 2.032799 GTGCCACTCGACAAATTTGACA 59.967 45.455 24.64 8.51 0.00 3.58
813 900 2.032799 TGTGCCACTCGACAAATTTGAC 59.967 45.455 24.64 17.07 0.00 3.18
814 901 2.032799 GTGTGCCACTCGACAAATTTGA 59.967 45.455 24.64 1.45 0.00 2.69
815 902 2.384382 GTGTGCCACTCGACAAATTTG 58.616 47.619 16.67 16.67 0.00 2.32
816 903 1.336755 GGTGTGCCACTCGACAAATTT 59.663 47.619 0.00 0.00 34.40 1.82
817 904 0.951558 GGTGTGCCACTCGACAAATT 59.048 50.000 0.00 0.00 34.40 1.82
818 905 0.889186 GGGTGTGCCACTCGACAAAT 60.889 55.000 0.00 0.00 34.40 2.32
819 906 1.525077 GGGTGTGCCACTCGACAAA 60.525 57.895 0.00 0.00 34.40 2.83
820 907 2.110213 GGGTGTGCCACTCGACAA 59.890 61.111 0.00 0.00 34.40 3.18
821 908 2.842462 AGGGTGTGCCACTCGACA 60.842 61.111 0.00 0.00 40.24 4.35
822 909 2.048127 GAGGGTGTGCCACTCGAC 60.048 66.667 0.00 0.00 40.24 4.20
823 910 3.311110 GGAGGGTGTGCCACTCGA 61.311 66.667 0.00 0.00 40.24 4.04
824 911 4.742201 CGGAGGGTGTGCCACTCG 62.742 72.222 0.00 2.55 40.24 4.18
825 912 3.626924 ACGGAGGGTGTGCCACTC 61.627 66.667 0.00 1.70 34.61 3.51
826 913 3.941188 CACGGAGGGTGTGCCACT 61.941 66.667 0.00 0.00 41.89 4.00
840 927 4.154347 GGAGCCCTCTGAGCCACG 62.154 72.222 0.00 0.00 0.00 4.94
855 942 0.614294 TCGGTAAGGAATTTGGCGGA 59.386 50.000 0.00 0.00 0.00 5.54
856 943 1.455248 TTCGGTAAGGAATTTGGCGG 58.545 50.000 0.00 0.00 0.00 6.13
858 945 3.780902 CCAATTCGGTAAGGAATTTGGC 58.219 45.455 0.00 0.00 42.41 4.52
881 3418 0.105964 TTTGGACCCACACGTCAGAG 59.894 55.000 0.00 0.00 34.24 3.35
888 3425 2.140717 CGTAACTCTTTGGACCCACAC 58.859 52.381 0.00 0.00 0.00 3.82
900 3437 1.080025 GTTGCGGAGGCGTAACTCT 60.080 57.895 0.00 0.00 44.10 3.24
901 3438 0.947180 TTGTTGCGGAGGCGTAACTC 60.947 55.000 0.00 0.00 44.10 3.01
1012 3875 1.207089 TGGAATCGGCGAGACAAGAAT 59.793 47.619 17.22 0.00 0.00 2.40
1016 3879 4.304110 GTTATATGGAATCGGCGAGACAA 58.696 43.478 17.22 5.66 0.00 3.18
1074 3938 2.222027 CTCCGTTGCTCTTTTTCACCT 58.778 47.619 0.00 0.00 0.00 4.00
1344 4208 4.749310 CGGTCGAGCTGCAGCCTT 62.749 66.667 34.39 18.30 43.38 4.35
1663 4540 6.598503 TCTGGGAACTCATAGAAGTACGATA 58.401 40.000 0.00 0.00 0.00 2.92
1666 4543 5.561145 CGATCTGGGAACTCATAGAAGTACG 60.561 48.000 0.00 0.00 0.00 3.67
1670 4550 4.927978 ACGATCTGGGAACTCATAGAAG 57.072 45.455 0.00 0.00 0.00 2.85
1731 4611 9.244292 AGAGCTGTCCAGATTATATACGAATAA 57.756 33.333 0.00 0.00 0.00 1.40
1746 4626 3.896888 AGGAATCATCTAGAGCTGTCCAG 59.103 47.826 14.45 0.00 0.00 3.86
1772 4652 5.517770 CGGTAAACTACACTTTAAGATCCCG 59.482 44.000 0.00 0.00 0.00 5.14
1799 4679 6.074356 GCTAATTTGAACGATGCAACTTTTGT 60.074 34.615 0.00 0.00 0.00 2.83
1800 4680 6.074409 TGCTAATTTGAACGATGCAACTTTTG 60.074 34.615 0.00 0.00 0.00 2.44
1887 4767 5.515270 GTCAGAAATGCATCAACATCATGTG 59.485 40.000 0.00 0.00 0.00 3.21
1888 4768 5.184287 TGTCAGAAATGCATCAACATCATGT 59.816 36.000 0.00 0.00 0.00 3.21
1918 4798 4.792521 TTCATGTTTTAATCCCAACGGG 57.207 40.909 0.00 0.00 46.11 5.28
2107 4993 9.301153 GCCTACCAAAATGTCTTATATTTTGTG 57.699 33.333 17.03 12.56 46.45 3.33
2133 5019 4.457949 AGACGTTTTGGTAGGCCATTTTAG 59.542 41.667 5.01 0.00 45.56 1.85
2134 5020 4.400120 AGACGTTTTGGTAGGCCATTTTA 58.600 39.130 5.01 0.00 45.56 1.52
2136 5022 2.871453 AGACGTTTTGGTAGGCCATTT 58.129 42.857 5.01 0.00 45.56 2.32
2137 5023 2.579410 AGACGTTTTGGTAGGCCATT 57.421 45.000 5.01 0.00 45.56 3.16
2138 5024 2.579410 AAGACGTTTTGGTAGGCCAT 57.421 45.000 5.01 0.00 45.56 4.40
2140 5026 6.688637 AAATATAAGACGTTTTGGTAGGCC 57.311 37.500 0.83 0.00 0.00 5.19
2279 5167 9.376075 GTGATACTTCTCTGATTTCTGAAATGA 57.624 33.333 19.59 10.95 0.00 2.57
2280 5168 9.159364 TGTGATACTTCTCTGATTTCTGAAATG 57.841 33.333 19.59 7.17 0.00 2.32
2417 5368 3.556365 TGTAAACAGCAATTCGTTCGTGA 59.444 39.130 0.00 0.00 0.00 4.35
2448 5399 5.082251 TGTTCTGGATGATCTTCTGTCTG 57.918 43.478 8.38 0.00 0.00 3.51
2458 5409 0.994247 TGGTGCCTGTTCTGGATGAT 59.006 50.000 0.00 0.00 0.00 2.45
2459 5410 0.770499 TTGGTGCCTGTTCTGGATGA 59.230 50.000 0.00 0.00 0.00 2.92
2460 5411 1.475280 CATTGGTGCCTGTTCTGGATG 59.525 52.381 0.00 0.00 0.00 3.51
2579 5533 2.251818 GGCAGGGATGCTATAGACTGA 58.748 52.381 3.21 0.00 34.73 3.41
2588 5542 4.349503 TGTTGCGGCAGGGATGCT 62.350 61.111 1.67 0.00 34.73 3.79
2600 5554 1.172180 TGCAGTAAGGTGGCTGTTGC 61.172 55.000 0.00 0.00 35.33 4.17
2671 5634 1.138859 CAATGTGTGCTCCGGGAGATA 59.861 52.381 27.95 12.49 0.00 1.98
2681 5644 8.836268 ATAAAATCATGTTTTCAATGTGTGCT 57.164 26.923 2.31 0.00 0.00 4.40
2718 5681 3.048600 TGCTATCTTCTGGGCCTTATGT 58.951 45.455 4.53 0.00 0.00 2.29
2764 5727 9.052759 GTTTAATGTTTCTGTAGGAAGAGACAA 57.947 33.333 2.23 0.00 42.54 3.18
2813 5776 4.839121 AGTGAAACATAAGCCGGTGAATA 58.161 39.130 1.90 0.00 41.43 1.75
2916 5879 5.953571 TCTGATCCTAGCACCTTATCACTA 58.046 41.667 0.00 0.00 0.00 2.74
2918 5881 5.537300 TTCTGATCCTAGCACCTTATCAC 57.463 43.478 0.00 0.00 0.00 3.06
3021 5984 5.209977 CCAATATTCACAATGCATCACTCG 58.790 41.667 0.00 0.00 0.00 4.18
3060 6023 2.626743 AGGCACTCTACACGTAAACACT 59.373 45.455 0.00 0.00 0.00 3.55
3260 6315 0.861837 GAACACTGCACTTCCAGTCG 59.138 55.000 0.00 0.00 43.85 4.18
3300 6355 2.032290 GGTGTAACACAGTTTTCCTCGC 60.032 50.000 0.00 0.00 39.98 5.03
3301 6356 3.199677 TGGTGTAACACAGTTTTCCTCG 58.800 45.455 0.00 0.00 39.98 4.63
3379 6435 2.360483 TGGTGTAACACAATGCTTGGTG 59.640 45.455 5.59 5.59 39.98 4.17
3381 6437 3.317711 TCTTGGTGTAACACAATGCTTGG 59.682 43.478 0.00 0.00 39.98 3.61
3382 6438 4.290155 GTCTTGGTGTAACACAATGCTTG 58.710 43.478 0.00 0.00 39.98 4.01
3383 6439 3.003275 CGTCTTGGTGTAACACAATGCTT 59.997 43.478 0.00 0.00 39.98 3.91
3384 6440 2.548057 CGTCTTGGTGTAACACAATGCT 59.452 45.455 0.00 0.00 39.98 3.79
3385 6441 2.350388 CCGTCTTGGTGTAACACAATGC 60.350 50.000 0.00 0.00 39.98 3.56
3386 6442 3.135225 TCCGTCTTGGTGTAACACAATG 58.865 45.455 0.00 0.00 39.98 2.82
3387 6443 3.399330 CTCCGTCTTGGTGTAACACAAT 58.601 45.455 0.00 0.00 39.98 2.71
3388 6444 2.484065 CCTCCGTCTTGGTGTAACACAA 60.484 50.000 0.00 0.00 39.98 3.33
3389 6445 1.069513 CCTCCGTCTTGGTGTAACACA 59.930 52.381 0.00 0.00 39.98 3.72
3390 6446 1.069668 ACCTCCGTCTTGGTGTAACAC 59.930 52.381 0.00 0.00 39.98 3.32
3391 6447 1.416243 ACCTCCGTCTTGGTGTAACA 58.584 50.000 0.00 0.00 39.98 2.41
3392 6448 2.560105 ACTACCTCCGTCTTGGTGTAAC 59.440 50.000 0.00 0.00 39.52 2.50
3393 6449 2.880443 ACTACCTCCGTCTTGGTGTAA 58.120 47.619 0.00 0.00 39.52 2.41
3394 6450 2.592102 ACTACCTCCGTCTTGGTGTA 57.408 50.000 0.00 0.00 39.52 2.90
3397 6453 5.121380 TCTAATACTACCTCCGTCTTGGT 57.879 43.478 0.00 0.00 39.52 3.67
3398 6454 7.941431 ATATCTAATACTACCTCCGTCTTGG 57.059 40.000 0.00 0.00 40.09 3.61
3400 6456 8.168725 TGGAATATCTAATACTACCTCCGTCTT 58.831 37.037 0.00 0.00 0.00 3.01
3401 6457 7.696981 TGGAATATCTAATACTACCTCCGTCT 58.303 38.462 0.00 0.00 0.00 4.18
3406 6471 8.973182 CCTTCCTGGAATATCTAATACTACCTC 58.027 40.741 10.03 0.00 38.35 3.85
3440 6505 7.818997 AGGAACGGAGGGAATATAATTTTTC 57.181 36.000 0.00 0.00 0.00 2.29
3448 6513 9.556772 TCTTATATTTAGGAACGGAGGGAATAT 57.443 33.333 0.00 0.00 0.00 1.28
3449 6514 8.810041 GTCTTATATTTAGGAACGGAGGGAATA 58.190 37.037 0.00 0.00 0.00 1.75
3450 6515 7.256583 GGTCTTATATTTAGGAACGGAGGGAAT 60.257 40.741 0.00 0.00 0.00 3.01
3451 6516 6.042437 GGTCTTATATTTAGGAACGGAGGGAA 59.958 42.308 0.00 0.00 0.00 3.97
3472 6537 6.903534 TCCATAGTGGAATCTCTAAAAGGTCT 59.096 38.462 0.00 0.00 45.00 3.85
3568 6637 6.653020 TGAATATGAGAAGGTACAGCAACAT 58.347 36.000 0.00 0.00 0.00 2.71
3594 6663 6.980593 CAGAATGTACATTTCAGTTTTCCCA 58.019 36.000 21.63 0.00 0.00 4.37
3668 6737 9.404848 CCTGCATCCATCATATAGAAACATTAT 57.595 33.333 0.00 0.00 0.00 1.28
3741 6810 6.068670 GTGTATGGGCCCTTTATATTTCAGT 58.931 40.000 25.70 0.00 0.00 3.41
3771 6840 4.083802 CCTTCCTCACGAACAATTGTCTTC 60.084 45.833 12.39 5.87 0.00 2.87
3828 6897 5.517566 GGTTTGTACCGTTACGCATGACG 62.518 52.174 0.00 1.93 40.64 4.35
3912 6981 1.674057 CTGGAGAACCTTGCCGTCT 59.326 57.895 0.00 0.00 37.04 4.18
3942 7011 1.272147 GCAAGGAACCCAGAGACCATT 60.272 52.381 0.00 0.00 0.00 3.16
4002 7071 0.325933 CCATCAGCCTGGTCTTCACA 59.674 55.000 0.00 0.00 0.00 3.58
4219 7288 0.251165 AAGCAGGCGGGTTACACATT 60.251 50.000 0.00 0.00 34.93 2.71
4221 7290 0.887387 GAAAGCAGGCGGGTTACACA 60.887 55.000 1.83 0.00 35.85 3.72
4252 7324 3.930848 GACGACTAACCAATCAATTCGGT 59.069 43.478 0.00 0.00 33.32 4.69
4370 7496 8.318412 GGAAGGGGTTTAATCATTATTTGTTGT 58.682 33.333 0.00 0.00 0.00 3.32
4373 7499 8.442660 TTGGAAGGGGTTTAATCATTATTTGT 57.557 30.769 0.00 0.00 0.00 2.83
4374 7500 9.904198 AATTGGAAGGGGTTTAATCATTATTTG 57.096 29.630 0.00 0.00 0.00 2.32
4444 7574 6.345096 TCACATAACAGTCAGTCATCAGAA 57.655 37.500 0.00 0.00 0.00 3.02
4540 7674 1.299541 CGTCATGGGCTTTTATCGCT 58.700 50.000 0.00 0.00 0.00 4.93
4687 7873 3.861840 GCTGAATCTACAGTACAGCCAA 58.138 45.455 8.96 0.00 45.19 4.52
4720 8407 0.684153 CCCCCATGTCGCAAGGAAAT 60.684 55.000 3.21 0.00 38.47 2.17
4747 8435 1.550524 TGTCTCGGATTTGGAGGTCAG 59.449 52.381 0.00 0.00 32.34 3.51
4847 8535 0.620556 TTGGATGCCTTCTGAGGTCC 59.379 55.000 0.00 0.00 45.44 4.46
4941 8645 4.013267 ACAACAGAAGGAGAACCAGATG 57.987 45.455 0.00 0.00 38.94 2.90
4970 8674 2.370281 TGAATGGCTGAACGACTCTC 57.630 50.000 0.00 0.00 0.00 3.20
4994 8698 1.763546 TTGTGGCGAGGACATGGACA 61.764 55.000 0.00 0.00 0.00 4.02
4995 8699 0.605319 TTTGTGGCGAGGACATGGAC 60.605 55.000 0.00 0.00 0.00 4.02
4996 8700 0.605319 GTTTGTGGCGAGGACATGGA 60.605 55.000 0.00 0.00 0.00 3.41
4997 8701 1.586154 GGTTTGTGGCGAGGACATGG 61.586 60.000 0.00 0.00 0.00 3.66
4998 8702 1.586154 GGGTTTGTGGCGAGGACATG 61.586 60.000 0.00 0.00 0.00 3.21
4999 8703 1.303317 GGGTTTGTGGCGAGGACAT 60.303 57.895 0.00 0.00 0.00 3.06
5022 8726 1.068954 GCACCGGAGCTTTTTCTCAAG 60.069 52.381 17.33 0.00 34.84 3.02
5024 8728 0.108585 AGCACCGGAGCTTTTTCTCA 59.891 50.000 21.59 0.00 43.70 3.27
5025 8729 2.934083 AGCACCGGAGCTTTTTCTC 58.066 52.632 21.59 0.00 43.70 2.87
5189 8922 1.672881 GCATCTACCGATTTGCTTGCT 59.327 47.619 0.00 0.00 0.00 3.91
5190 8923 1.401552 TGCATCTACCGATTTGCTTGC 59.598 47.619 0.00 0.00 0.00 4.01
5191 8924 3.313249 TCATGCATCTACCGATTTGCTTG 59.687 43.478 0.00 0.00 31.00 4.01
5193 8926 3.198409 TCATGCATCTACCGATTTGCT 57.802 42.857 0.00 0.00 0.00 3.91
5196 8929 5.237996 CACTGATTCATGCATCTACCGATTT 59.762 40.000 6.89 0.00 0.00 2.17
5197 8930 4.753610 CACTGATTCATGCATCTACCGATT 59.246 41.667 6.89 0.00 0.00 3.34
5198 8931 4.202295 ACACTGATTCATGCATCTACCGAT 60.202 41.667 6.89 0.00 0.00 4.18
5201 8934 7.875041 AGTATAACACTGATTCATGCATCTACC 59.125 37.037 6.89 0.00 35.62 3.18
5220 8986 3.808174 GTGGCCATCGAGGAAAGTATAAC 59.192 47.826 9.72 0.00 41.22 1.89
5221 8987 3.452990 TGTGGCCATCGAGGAAAGTATAA 59.547 43.478 9.72 0.00 41.22 0.98
5222 8988 3.035363 TGTGGCCATCGAGGAAAGTATA 58.965 45.455 9.72 0.00 41.22 1.47
5223 8989 1.837439 TGTGGCCATCGAGGAAAGTAT 59.163 47.619 9.72 0.00 41.22 2.12
5224 8990 1.271856 TGTGGCCATCGAGGAAAGTA 58.728 50.000 9.72 0.00 41.22 2.24
5225 8991 0.620556 ATGTGGCCATCGAGGAAAGT 59.379 50.000 9.72 0.00 41.22 2.66
5226 8992 2.620251 TATGTGGCCATCGAGGAAAG 57.380 50.000 9.72 0.00 41.22 2.62
5227 8993 2.172505 ACATATGTGGCCATCGAGGAAA 59.827 45.455 9.72 0.00 41.22 3.13
5229 8995 1.423584 ACATATGTGGCCATCGAGGA 58.576 50.000 9.72 0.00 41.22 3.71
5230 8996 2.260844 AACATATGTGGCCATCGAGG 57.739 50.000 9.72 0.58 41.84 4.63
5244 9015 6.133356 AGAAACACAAGGGGAAAGAAACATA 58.867 36.000 0.00 0.00 0.00 2.29
5278 9049 2.365582 GGCGCTGAAGATTCCCTTTAA 58.634 47.619 7.64 0.00 34.68 1.52
5311 9082 2.050269 CACTCTGGTGAGGGTTCGT 58.950 57.895 0.00 0.00 45.61 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.