Multiple sequence alignment - TraesCS4D01G194500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G194500 chr4D 100.000 5840 0 0 1 5840 337267011 337261172 0.000000e+00 10785.0
1 TraesCS4D01G194500 chr4D 97.959 49 1 0 3698 3746 337263266 337263218 1.040000e-12 86.1
2 TraesCS4D01G194500 chr4D 97.959 49 1 0 3746 3794 337263314 337263266 1.040000e-12 86.1
3 TraesCS4D01G194500 chr4A 96.528 1469 48 1 2278 3743 135344113 135345581 0.000000e+00 2427.0
4 TraesCS4D01G194500 chr4A 95.798 1404 53 6 645 2047 135342719 135344117 0.000000e+00 2261.0
5 TraesCS4D01G194500 chr4A 91.994 1449 70 24 3746 5184 135345536 135346948 0.000000e+00 1991.0
6 TraesCS4D01G194500 chr4A 93.383 665 26 10 5184 5840 135353574 135354228 0.000000e+00 968.0
7 TraesCS4D01G194500 chr4A 90.424 637 49 6 1 636 135320983 135321608 0.000000e+00 828.0
8 TraesCS4D01G194500 chr4B 96.259 1470 52 3 2278 3746 416444879 416443412 0.000000e+00 2407.0
9 TraesCS4D01G194500 chr4B 95.252 1411 52 8 645 2047 416446278 416444875 0.000000e+00 2220.0
10 TraesCS4D01G194500 chr4B 89.326 965 60 25 4513 5457 416442601 416441660 0.000000e+00 1171.0
11 TraesCS4D01G194500 chr4B 90.065 775 52 18 3746 4514 416443460 416442705 0.000000e+00 981.0
12 TraesCS4D01G194500 chr4B 94.141 256 14 1 5585 5840 416441539 416441285 7.100000e-104 388.0
13 TraesCS4D01G194500 chr4B 94.382 89 5 0 5470 5558 416441623 416441535 2.840000e-28 137.0
14 TraesCS4D01G194500 chr3B 88.125 640 43 13 1 638 12545588 12546196 0.000000e+00 730.0
15 TraesCS4D01G194500 chr3D 88.235 204 18 5 435 638 5544079 5543882 7.560000e-59 239.0
16 TraesCS4D01G194500 chr3D 95.385 130 4 2 304 433 5545517 5545390 7.670000e-49 206.0
17 TraesCS4D01G194500 chr7A 89.474 133 7 5 5218 5349 20999878 21000004 1.680000e-35 161.0
18 TraesCS4D01G194500 chr7B 76.094 297 57 10 136 423 125052334 125052625 6.100000e-30 143.0
19 TraesCS4D01G194500 chr6D 72.629 464 102 21 183 638 36578457 36578011 4.750000e-26 130.0
20 TraesCS4D01G194500 chr1B 75.304 247 48 10 327 571 671469184 671468949 8.000000e-19 106.0
21 TraesCS4D01G194500 chr2B 80.374 107 16 5 324 428 91151515 91151618 6.280000e-10 76.8
22 TraesCS4D01G194500 chr1D 71.548 239 61 7 182 417 251842212 251842446 2.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G194500 chr4D 337261172 337267011 5839 True 3652.400000 10785 98.639333 1 5840 3 chr4D.!!$R1 5839
1 TraesCS4D01G194500 chr4A 135342719 135346948 4229 False 2226.333333 2427 94.773333 645 5184 3 chr4A.!!$F3 4539
2 TraesCS4D01G194500 chr4A 135353574 135354228 654 False 968.000000 968 93.383000 5184 5840 1 chr4A.!!$F2 656
3 TraesCS4D01G194500 chr4A 135320983 135321608 625 False 828.000000 828 90.424000 1 636 1 chr4A.!!$F1 635
4 TraesCS4D01G194500 chr4B 416441285 416446278 4993 True 1217.333333 2407 93.237500 645 5840 6 chr4B.!!$R1 5195
5 TraesCS4D01G194500 chr3B 12545588 12546196 608 False 730.000000 730 88.125000 1 638 1 chr3B.!!$F1 637
6 TraesCS4D01G194500 chr3D 5543882 5545517 1635 True 222.500000 239 91.810000 304 638 2 chr3D.!!$R1 334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 275 0.038526 AACTCACGACGTGGATGTCC 60.039 55.0 26.55 0.0 35.40 4.02 F
570 1883 0.792640 CATGTGTCTTCGGAGTGTGC 59.207 55.0 0.00 0.0 0.00 4.57 F
2147 3467 0.101219 GCCAATTTTCCTAGCCGCTG 59.899 55.0 2.16 0.0 0.00 5.18 F
2241 3561 0.035820 TTTATTGGCTCGCCCTCGTT 60.036 50.0 5.33 0.0 36.96 3.85 F
2243 3563 0.742990 TATTGGCTCGCCCTCGTTTG 60.743 55.0 5.33 0.0 36.96 2.93 F
4125 5459 0.871722 TTGGCGTGAAGAATGTTCCG 59.128 50.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1115 2434 0.034574 ATACAGCCCCAAATCACGCA 60.035 50.0 0.00 0.0 0.00 5.24 R
2222 3542 0.035820 AACGAGGGCGAGCCAATAAA 60.036 50.0 16.65 0.0 41.64 1.40 R
4143 5477 0.179200 GTTGCACCTCGCCATTAACG 60.179 55.0 0.00 0.0 41.33 3.18 R
4152 5486 1.151668 CCTTCAGAAGTTGCACCTCG 58.848 55.0 9.41 0.0 0.00 4.63 R
4444 5778 0.863144 TCGTCAAACTGGCGTTAAGC 59.137 50.0 0.11 0.0 46.84 3.09 R
5257 6732 0.035820 TTTGTGAGGCCATCCCGTAC 60.036 55.0 5.01 0.0 39.21 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.992008 CAAATATTTGTGACCGGGTTATTAGT 58.008 34.615 18.32 0.00 33.59 2.24
120 121 3.464720 TCAGAGTGAGAAGTGGAGGAT 57.535 47.619 0.00 0.00 0.00 3.24
180 184 1.136305 CTAGCTAAGCAACTACGGGCA 59.864 52.381 0.00 0.00 0.00 5.36
263 267 3.431922 TTTCTCTTCAACTCACGACGT 57.568 42.857 0.00 0.00 0.00 4.34
270 274 1.060713 CAACTCACGACGTGGATGTC 58.939 55.000 26.55 0.00 33.87 3.06
271 275 0.038526 AACTCACGACGTGGATGTCC 60.039 55.000 26.55 0.00 35.40 4.02
273 277 2.125673 CACGACGTGGATGTCCCC 60.126 66.667 20.26 0.00 35.40 4.81
442 1755 5.782845 AGGAGATCAAGGACTCACTTAACTT 59.217 40.000 0.00 0.00 35.17 2.66
443 1756 6.271159 AGGAGATCAAGGACTCACTTAACTTT 59.729 38.462 0.00 0.00 35.17 2.66
510 1823 5.560966 AATAAGGTCGCACACATTTTAGG 57.439 39.130 0.00 0.00 29.85 2.69
526 1839 3.926058 TTAGGTAGGGAAGGTTGCATC 57.074 47.619 0.00 0.00 0.00 3.91
533 1846 3.782992 AGGGAAGGTTGCATCAAATCTT 58.217 40.909 0.00 0.00 0.00 2.40
570 1883 0.792640 CATGTGTCTTCGGAGTGTGC 59.207 55.000 0.00 0.00 0.00 4.57
619 1932 4.320935 GCCGTGAACATTGAATAAAGTGGT 60.321 41.667 0.00 0.00 0.00 4.16
621 1934 6.568844 GCCGTGAACATTGAATAAAGTGGTAA 60.569 38.462 0.00 0.00 0.00 2.85
637 1950 5.199723 AGTGGTAACGTTTTCCCCTAAAAA 58.800 37.500 5.91 0.00 38.76 1.94
638 1951 5.834742 AGTGGTAACGTTTTCCCCTAAAAAT 59.165 36.000 5.91 0.00 38.76 1.82
639 1952 7.003482 AGTGGTAACGTTTTCCCCTAAAAATA 58.997 34.615 5.91 0.00 38.76 1.40
640 1953 7.670979 AGTGGTAACGTTTTCCCCTAAAAATAT 59.329 33.333 5.91 0.00 38.76 1.28
641 1954 8.955388 GTGGTAACGTTTTCCCCTAAAAATATA 58.045 33.333 5.91 0.00 38.76 0.86
642 1955 9.697990 TGGTAACGTTTTCCCCTAAAAATATAT 57.302 29.630 5.91 0.00 38.76 0.86
813 2132 0.908505 GTCGCGAAACATCTCGAGTC 59.091 55.000 12.06 0.77 41.44 3.36
895 2214 0.811616 CCGCTTCCCTCCAAATCGAG 60.812 60.000 0.00 0.00 0.00 4.04
1109 2428 6.406624 CCCTACAAGGTGAGTGATTACGTAAT 60.407 42.308 20.46 20.46 31.93 1.89
1288 2607 7.148820 CCTTAATTTTGTTAATCAGTTGCCGTG 60.149 37.037 0.00 0.00 0.00 4.94
1374 2693 1.869767 GGCGTCCAGATGCTTATGAAG 59.130 52.381 11.42 0.00 42.72 3.02
1379 2698 3.559242 GTCCAGATGCTTATGAAGTCTGC 59.441 47.826 0.00 0.00 36.00 4.26
1414 2733 4.398319 ACATCAAGGTGTTAAGAAGGTGG 58.602 43.478 0.00 0.00 0.00 4.61
1477 2796 0.843309 TCTGGTTGCAGGTTCTTGGA 59.157 50.000 0.00 0.00 0.00 3.53
1602 2921 7.554835 ACCGTGATAGTTTAGCATCCAATTTTA 59.445 33.333 0.00 0.00 0.00 1.52
1716 3035 1.821216 AATGGTAAGACGCCCAACTG 58.179 50.000 0.00 0.00 33.66 3.16
1844 3163 7.807977 TCAAGCTTCCACCAAATATAGAATC 57.192 36.000 0.00 0.00 0.00 2.52
1963 3282 3.616956 TTCAGTTATCTCCAGGCACAG 57.383 47.619 0.00 0.00 0.00 3.66
2035 3355 9.685828 CTCTCCTATTTCTATTAAGAGAAACCG 57.314 37.037 23.64 17.37 45.70 4.44
2042 3362 8.780846 TTTCTATTAAGAGAAACCGCATTGTA 57.219 30.769 18.86 0.00 39.87 2.41
2043 3363 8.958119 TTCTATTAAGAGAAACCGCATTGTAT 57.042 30.769 10.05 0.00 32.46 2.29
2044 3364 8.958119 TCTATTAAGAGAAACCGCATTGTATT 57.042 30.769 0.00 0.00 0.00 1.89
2047 3367 7.548196 TTAAGAGAAACCGCATTGTATTAGG 57.452 36.000 0.00 0.00 0.00 2.69
2048 3368 4.451900 AGAGAAACCGCATTGTATTAGGG 58.548 43.478 0.00 0.00 0.00 3.53
2049 3369 4.080526 AGAGAAACCGCATTGTATTAGGGT 60.081 41.667 0.00 0.00 0.00 4.34
2050 3370 3.945285 AGAAACCGCATTGTATTAGGGTG 59.055 43.478 0.00 0.00 0.00 4.61
2051 3371 3.359695 AACCGCATTGTATTAGGGTGT 57.640 42.857 0.00 0.00 0.00 4.16
2052 3372 2.639065 ACCGCATTGTATTAGGGTGTG 58.361 47.619 0.00 0.00 0.00 3.82
2053 3373 2.026636 ACCGCATTGTATTAGGGTGTGT 60.027 45.455 0.00 0.00 0.00 3.72
2054 3374 3.013921 CCGCATTGTATTAGGGTGTGTT 58.986 45.455 0.00 0.00 0.00 3.32
2055 3375 3.442273 CCGCATTGTATTAGGGTGTGTTT 59.558 43.478 0.00 0.00 0.00 2.83
2056 3376 4.411327 CGCATTGTATTAGGGTGTGTTTG 58.589 43.478 0.00 0.00 0.00 2.93
2057 3377 4.674101 CGCATTGTATTAGGGTGTGTTTGG 60.674 45.833 0.00 0.00 0.00 3.28
2058 3378 4.461081 GCATTGTATTAGGGTGTGTTTGGA 59.539 41.667 0.00 0.00 0.00 3.53
2059 3379 5.127031 GCATTGTATTAGGGTGTGTTTGGAT 59.873 40.000 0.00 0.00 0.00 3.41
2060 3380 6.680378 GCATTGTATTAGGGTGTGTTTGGATC 60.680 42.308 0.00 0.00 0.00 3.36
2061 3381 4.509616 TGTATTAGGGTGTGTTTGGATCG 58.490 43.478 0.00 0.00 0.00 3.69
2062 3382 1.816074 TTAGGGTGTGTTTGGATCGC 58.184 50.000 0.00 0.00 0.00 4.58
2063 3383 0.687920 TAGGGTGTGTTTGGATCGCA 59.312 50.000 0.00 0.00 0.00 5.10
2064 3384 0.606401 AGGGTGTGTTTGGATCGCAG 60.606 55.000 0.00 0.00 0.00 5.18
2065 3385 1.210155 GGTGTGTTTGGATCGCAGC 59.790 57.895 0.00 0.00 36.83 5.25
2066 3386 1.210155 GTGTGTTTGGATCGCAGCC 59.790 57.895 0.00 0.00 0.00 4.85
2067 3387 1.228094 TGTGTTTGGATCGCAGCCA 60.228 52.632 0.00 0.00 0.00 4.75
2068 3388 0.608856 TGTGTTTGGATCGCAGCCAT 60.609 50.000 0.00 0.00 34.90 4.40
2069 3389 0.179156 GTGTTTGGATCGCAGCCATG 60.179 55.000 0.00 0.00 34.90 3.66
2070 3390 0.322366 TGTTTGGATCGCAGCCATGA 60.322 50.000 0.00 0.00 34.90 3.07
2071 3391 0.379669 GTTTGGATCGCAGCCATGAG 59.620 55.000 0.00 0.00 34.90 2.90
2072 3392 1.378882 TTTGGATCGCAGCCATGAGC 61.379 55.000 0.00 0.00 44.25 4.26
2083 3403 2.638480 GCCATGAGCTACCATACCAA 57.362 50.000 0.00 0.00 38.99 3.67
2084 3404 2.930950 GCCATGAGCTACCATACCAAA 58.069 47.619 0.00 0.00 38.99 3.28
2085 3405 3.287222 GCCATGAGCTACCATACCAAAA 58.713 45.455 0.00 0.00 38.99 2.44
2086 3406 3.699038 GCCATGAGCTACCATACCAAAAA 59.301 43.478 0.00 0.00 38.99 1.94
2102 3422 1.864565 AAAAATTGGCGTTGACTGGC 58.135 45.000 0.00 0.00 0.00 4.85
2103 3423 0.749649 AAAATTGGCGTTGACTGGCA 59.250 45.000 0.00 0.00 40.47 4.92
2104 3424 0.314935 AAATTGGCGTTGACTGGCAG 59.685 50.000 14.16 14.16 43.21 4.85
2105 3425 2.146073 AATTGGCGTTGACTGGCAGC 62.146 55.000 15.89 8.22 43.21 5.25
2106 3426 4.560743 TGGCGTTGACTGGCAGCA 62.561 61.111 15.89 10.97 36.93 4.41
2107 3427 3.058160 GGCGTTGACTGGCAGCAT 61.058 61.111 15.89 0.00 0.00 3.79
2108 3428 1.745115 GGCGTTGACTGGCAGCATA 60.745 57.895 15.89 0.00 0.00 3.14
2109 3429 1.709147 GGCGTTGACTGGCAGCATAG 61.709 60.000 15.89 11.06 0.00 2.23
2110 3430 1.709147 GCGTTGACTGGCAGCATAGG 61.709 60.000 15.89 6.55 0.00 2.57
2111 3431 1.709147 CGTTGACTGGCAGCATAGGC 61.709 60.000 15.89 0.00 41.61 3.93
2121 3441 2.100216 GCATAGGCGTGCGTTTGG 59.900 61.111 7.02 0.00 35.10 3.28
2122 3442 2.686816 GCATAGGCGTGCGTTTGGT 61.687 57.895 7.02 0.00 35.10 3.67
2123 3443 1.873165 CATAGGCGTGCGTTTGGTT 59.127 52.632 0.00 0.00 0.00 3.67
2124 3444 0.239879 CATAGGCGTGCGTTTGGTTT 59.760 50.000 0.00 0.00 0.00 3.27
2125 3445 0.239879 ATAGGCGTGCGTTTGGTTTG 59.760 50.000 0.00 0.00 0.00 2.93
2126 3446 1.787057 TAGGCGTGCGTTTGGTTTGG 61.787 55.000 0.00 0.00 0.00 3.28
2127 3447 2.103340 GCGTGCGTTTGGTTTGGT 59.897 55.556 0.00 0.00 0.00 3.67
2128 3448 2.227568 GCGTGCGTTTGGTTTGGTG 61.228 57.895 0.00 0.00 0.00 4.17
2129 3449 2.227568 CGTGCGTTTGGTTTGGTGC 61.228 57.895 0.00 0.00 0.00 5.01
2130 3450 1.880796 GTGCGTTTGGTTTGGTGCC 60.881 57.895 0.00 0.00 0.00 5.01
2131 3451 2.351244 TGCGTTTGGTTTGGTGCCA 61.351 52.632 0.00 0.00 0.00 4.92
2132 3452 1.153549 GCGTTTGGTTTGGTGCCAA 60.154 52.632 0.00 0.00 43.51 4.52
2133 3453 0.531753 GCGTTTGGTTTGGTGCCAAT 60.532 50.000 4.32 0.00 44.44 3.16
2134 3454 1.946745 CGTTTGGTTTGGTGCCAATT 58.053 45.000 4.32 0.00 44.44 2.32
2135 3455 2.284190 CGTTTGGTTTGGTGCCAATTT 58.716 42.857 4.32 0.00 44.44 1.82
2136 3456 2.680339 CGTTTGGTTTGGTGCCAATTTT 59.320 40.909 4.32 0.00 44.44 1.82
2137 3457 3.242576 CGTTTGGTTTGGTGCCAATTTTC 60.243 43.478 4.32 0.00 44.44 2.29
2138 3458 2.629336 TGGTTTGGTGCCAATTTTCC 57.371 45.000 4.32 6.34 35.70 3.13
2139 3459 2.122768 TGGTTTGGTGCCAATTTTCCT 58.877 42.857 4.32 0.00 35.70 3.36
2140 3460 3.309296 TGGTTTGGTGCCAATTTTCCTA 58.691 40.909 4.32 0.00 35.70 2.94
2141 3461 3.323403 TGGTTTGGTGCCAATTTTCCTAG 59.677 43.478 4.32 0.00 35.70 3.02
2142 3462 3.325870 GTTTGGTGCCAATTTTCCTAGC 58.674 45.455 4.32 0.00 35.70 3.42
2143 3463 1.555967 TGGTGCCAATTTTCCTAGCC 58.444 50.000 0.00 0.00 0.00 3.93
2144 3464 0.455815 GGTGCCAATTTTCCTAGCCG 59.544 55.000 0.00 0.00 0.00 5.52
2145 3465 0.179137 GTGCCAATTTTCCTAGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
2146 3466 0.323360 TGCCAATTTTCCTAGCCGCT 60.323 50.000 0.00 0.00 0.00 5.52
2147 3467 0.101219 GCCAATTTTCCTAGCCGCTG 59.899 55.000 2.16 0.00 0.00 5.18
2148 3468 0.101219 CCAATTTTCCTAGCCGCTGC 59.899 55.000 2.16 0.00 37.95 5.25
2149 3469 0.101219 CAATTTTCCTAGCCGCTGCC 59.899 55.000 2.16 0.00 38.69 4.85
2150 3470 0.323360 AATTTTCCTAGCCGCTGCCA 60.323 50.000 2.16 0.00 38.69 4.92
2151 3471 0.323360 ATTTTCCTAGCCGCTGCCAA 60.323 50.000 2.16 0.00 38.69 4.52
2152 3472 0.323360 TTTTCCTAGCCGCTGCCAAT 60.323 50.000 2.16 0.00 38.69 3.16
2153 3473 0.323360 TTTCCTAGCCGCTGCCAATT 60.323 50.000 2.16 0.00 38.69 2.32
2154 3474 0.323360 TTCCTAGCCGCTGCCAATTT 60.323 50.000 2.16 0.00 38.69 1.82
2155 3475 0.323360 TCCTAGCCGCTGCCAATTTT 60.323 50.000 2.16 0.00 38.69 1.82
2156 3476 0.532115 CCTAGCCGCTGCCAATTTTT 59.468 50.000 2.16 0.00 38.69 1.94
2177 3497 6.531503 TTTTGGTCACCAGTACATTTTTCA 57.468 33.333 0.00 0.00 33.81 2.69
2178 3498 5.508200 TTGGTCACCAGTACATTTTTCAC 57.492 39.130 0.00 0.00 33.81 3.18
2179 3499 3.562141 TGGTCACCAGTACATTTTTCACG 59.438 43.478 0.00 0.00 0.00 4.35
2180 3500 3.551551 GTCACCAGTACATTTTTCACGC 58.448 45.455 0.00 0.00 0.00 5.34
2181 3501 2.550606 TCACCAGTACATTTTTCACGCC 59.449 45.455 0.00 0.00 0.00 5.68
2182 3502 1.883926 ACCAGTACATTTTTCACGCCC 59.116 47.619 0.00 0.00 0.00 6.13
2183 3503 1.883275 CCAGTACATTTTTCACGCCCA 59.117 47.619 0.00 0.00 0.00 5.36
2184 3504 2.491693 CCAGTACATTTTTCACGCCCAT 59.508 45.455 0.00 0.00 0.00 4.00
2185 3505 3.500982 CAGTACATTTTTCACGCCCATG 58.499 45.455 0.00 0.00 0.00 3.66
2186 3506 2.094752 AGTACATTTTTCACGCCCATGC 60.095 45.455 0.00 0.00 0.00 4.06
2198 3518 3.646976 CCATGCGATGGCGAGCTG 61.647 66.667 0.00 0.00 44.70 4.24
2199 3519 3.646976 CATGCGATGGCGAGCTGG 61.647 66.667 0.00 0.00 44.10 4.85
2223 3543 3.513225 CGGATTCCTGCGCCAATT 58.487 55.556 4.18 0.00 0.00 2.32
2224 3544 1.809207 CGGATTCCTGCGCCAATTT 59.191 52.632 4.18 0.00 0.00 1.82
2225 3545 1.021202 CGGATTCCTGCGCCAATTTA 58.979 50.000 4.18 0.00 0.00 1.40
2226 3546 1.608590 CGGATTCCTGCGCCAATTTAT 59.391 47.619 4.18 0.00 0.00 1.40
2227 3547 2.034558 CGGATTCCTGCGCCAATTTATT 59.965 45.455 4.18 0.00 0.00 1.40
2228 3548 3.383761 GGATTCCTGCGCCAATTTATTG 58.616 45.455 4.18 0.00 37.52 1.90
2238 3558 2.781945 CAATTTATTGGCTCGCCCTC 57.218 50.000 5.33 0.00 34.22 4.30
2239 3559 1.002468 CAATTTATTGGCTCGCCCTCG 60.002 52.381 5.33 0.00 34.22 4.63
2240 3560 0.180406 ATTTATTGGCTCGCCCTCGT 59.820 50.000 5.33 0.00 36.96 4.18
2241 3561 0.035820 TTTATTGGCTCGCCCTCGTT 60.036 50.000 5.33 0.00 36.96 3.85
2242 3562 0.035820 TTATTGGCTCGCCCTCGTTT 60.036 50.000 5.33 0.00 36.96 3.60
2243 3563 0.742990 TATTGGCTCGCCCTCGTTTG 60.743 55.000 5.33 0.00 36.96 2.93
2244 3564 4.697756 TGGCTCGCCCTCGTTTGG 62.698 66.667 5.33 0.00 36.96 3.28
2245 3565 4.699522 GGCTCGCCCTCGTTTGGT 62.700 66.667 0.00 0.00 36.96 3.67
2246 3566 3.119096 GCTCGCCCTCGTTTGGTC 61.119 66.667 0.00 0.00 36.96 4.02
2247 3567 2.809601 CTCGCCCTCGTTTGGTCG 60.810 66.667 0.00 0.00 36.96 4.79
2248 3568 4.367023 TCGCCCTCGTTTGGTCGG 62.367 66.667 0.00 0.00 36.96 4.79
2251 3571 4.016706 CCCTCGTTTGGTCGGGCT 62.017 66.667 0.00 0.00 0.00 5.19
2252 3572 2.742372 CCTCGTTTGGTCGGGCTG 60.742 66.667 0.00 0.00 0.00 4.85
2253 3573 2.742372 CTCGTTTGGTCGGGCTGG 60.742 66.667 0.00 0.00 0.00 4.85
2256 3576 4.660938 GTTTGGTCGGGCTGGCCT 62.661 66.667 19.46 0.00 36.10 5.19
2257 3577 4.659172 TTTGGTCGGGCTGGCCTG 62.659 66.667 19.46 13.82 43.69 4.85
2269 3589 4.966787 GGCCTGGGCGACAACCAA 62.967 66.667 3.84 0.00 43.06 3.67
2270 3590 2.909965 GCCTGGGCGACAACCAAA 60.910 61.111 0.00 0.00 37.59 3.28
2271 3591 3.039134 CCTGGGCGACAACCAAAC 58.961 61.111 0.00 0.00 37.59 2.93
2272 3592 1.826054 CCTGGGCGACAACCAAACA 60.826 57.895 0.00 0.00 37.59 2.83
2273 3593 1.358759 CTGGGCGACAACCAAACAC 59.641 57.895 0.00 0.00 37.59 3.32
2274 3594 1.378646 TGGGCGACAACCAAACACA 60.379 52.632 0.00 0.00 34.44 3.72
2275 3595 1.065109 GGGCGACAACCAAACACAC 59.935 57.895 0.00 0.00 0.00 3.82
2276 3596 1.298041 GGCGACAACCAAACACACG 60.298 57.895 0.00 0.00 0.00 4.49
2319 3642 9.871238 AGAGCTAAATAGAAATAGAAAACGACA 57.129 29.630 0.00 0.00 0.00 4.35
2349 3672 5.190528 TGACCTAAAGGAGCAAGATGAGATT 59.809 40.000 2.23 0.00 38.94 2.40
2440 3763 2.768527 GACTCCAACTCCATCATCCTGA 59.231 50.000 0.00 0.00 0.00 3.86
2443 3766 3.453717 CTCCAACTCCATCATCCTGAGAA 59.546 47.826 0.00 0.00 0.00 2.87
2515 3838 3.690460 CCTTGAGCTTTTCAGGGTGTAT 58.310 45.455 0.00 0.00 45.53 2.29
2549 3872 8.251026 TGTACCTATTCATGTTCTTGTCTGTAG 58.749 37.037 0.00 0.00 0.00 2.74
2564 3887 8.780249 TCTTGTCTGTAGTTATTTTACCTTTGC 58.220 33.333 0.00 0.00 0.00 3.68
2624 3947 9.871238 GATTCTGTAACTCCTGTTAGTGAATTA 57.129 33.333 12.75 0.00 39.28 1.40
2776 4100 7.883391 AGAGGAAAAACTATGATCTCTACGA 57.117 36.000 0.00 0.00 0.00 3.43
3006 4330 3.500448 TCTCCAACATGTTTGCTGGTA 57.500 42.857 8.77 0.00 39.64 3.25
3185 4509 9.760660 CTTCTATTCTATACACAACAAGCAAAC 57.239 33.333 0.00 0.00 0.00 2.93
3357 4681 5.102313 GCTGGCAAGGTAAATTGTGATAAC 58.898 41.667 0.00 0.00 32.56 1.89
3423 4747 4.112634 CGGCTCGTCTCTTCATTTATTCA 58.887 43.478 0.00 0.00 0.00 2.57
3618 4942 1.064758 ACAAAGAAGGACACACCAGCA 60.065 47.619 0.00 0.00 42.04 4.41
3654 4978 1.003839 TGGGATGTTCCACAGTCGC 60.004 57.895 0.00 0.00 38.64 5.19
3682 5006 8.747471 TGATATTCTATGATGCAGAGGTAAGAG 58.253 37.037 0.00 0.00 0.00 2.85
3683 5007 4.862902 TCTATGATGCAGAGGTAAGAGC 57.137 45.455 0.00 0.00 0.00 4.09
3729 5053 5.827797 TGTTTGAGAAAATTAGGTCAGCACT 59.172 36.000 0.00 0.00 0.00 4.40
3730 5054 5.947228 TTGAGAAAATTAGGTCAGCACTG 57.053 39.130 0.00 0.00 0.00 3.66
3731 5055 4.326826 TGAGAAAATTAGGTCAGCACTGG 58.673 43.478 0.00 0.00 0.00 4.00
3732 5056 3.084786 AGAAAATTAGGTCAGCACTGGC 58.915 45.455 0.00 0.00 41.61 4.85
3742 5066 3.503363 GCACTGGCGCTGGTCATC 61.503 66.667 7.64 0.00 0.00 2.92
3743 5067 2.267006 CACTGGCGCTGGTCATCT 59.733 61.111 7.64 0.00 0.00 2.90
3744 5068 2.104859 CACTGGCGCTGGTCATCTG 61.105 63.158 7.64 0.00 0.00 2.90
3745 5069 3.200593 CTGGCGCTGGTCATCTGC 61.201 66.667 7.64 0.00 37.03 4.26
3746 5070 3.963687 CTGGCGCTGGTCATCTGCA 62.964 63.158 7.64 0.00 39.87 4.41
3747 5071 3.503363 GGCGCTGGTCATCTGCAC 61.503 66.667 7.64 0.00 39.87 4.57
3748 5072 2.435586 GCGCTGGTCATCTGCACT 60.436 61.111 0.00 0.00 39.87 4.40
3749 5073 2.747822 GCGCTGGTCATCTGCACTG 61.748 63.158 0.00 0.00 39.87 3.66
3750 5074 2.747822 CGCTGGTCATCTGCACTGC 61.748 63.158 0.00 0.00 39.87 4.40
3751 5075 1.376942 GCTGGTCATCTGCACTGCT 60.377 57.895 1.98 0.00 39.69 4.24
3752 5076 0.959372 GCTGGTCATCTGCACTGCTT 60.959 55.000 1.98 0.00 39.69 3.91
3753 5077 1.531423 CTGGTCATCTGCACTGCTTT 58.469 50.000 1.98 0.00 0.00 3.51
3754 5078 1.199327 CTGGTCATCTGCACTGCTTTG 59.801 52.381 1.98 0.00 0.00 2.77
3755 5079 1.242076 GGTCATCTGCACTGCTTTGT 58.758 50.000 1.98 0.00 0.00 2.83
3756 5080 1.610522 GGTCATCTGCACTGCTTTGTT 59.389 47.619 1.98 0.00 0.00 2.83
3757 5081 2.035066 GGTCATCTGCACTGCTTTGTTT 59.965 45.455 1.98 0.00 0.00 2.83
3758 5082 3.047796 GTCATCTGCACTGCTTTGTTTG 58.952 45.455 1.98 0.00 0.00 2.93
3759 5083 2.950975 TCATCTGCACTGCTTTGTTTGA 59.049 40.909 1.98 0.00 0.00 2.69
3760 5084 3.004002 TCATCTGCACTGCTTTGTTTGAG 59.996 43.478 1.98 0.00 0.00 3.02
3761 5085 2.642427 TCTGCACTGCTTTGTTTGAGA 58.358 42.857 1.98 0.00 0.00 3.27
3762 5086 3.016031 TCTGCACTGCTTTGTTTGAGAA 58.984 40.909 1.98 0.00 0.00 2.87
3763 5087 3.443329 TCTGCACTGCTTTGTTTGAGAAA 59.557 39.130 1.98 0.00 0.00 2.52
3764 5088 4.082300 TCTGCACTGCTTTGTTTGAGAAAA 60.082 37.500 1.98 0.00 0.00 2.29
3765 5089 4.757594 TGCACTGCTTTGTTTGAGAAAAT 58.242 34.783 1.98 0.00 0.00 1.82
3766 5090 5.177326 TGCACTGCTTTGTTTGAGAAAATT 58.823 33.333 1.98 0.00 0.00 1.82
3767 5091 6.336566 TGCACTGCTTTGTTTGAGAAAATTA 58.663 32.000 1.98 0.00 0.00 1.40
3768 5092 6.476380 TGCACTGCTTTGTTTGAGAAAATTAG 59.524 34.615 1.98 0.00 0.00 1.73
3769 5093 6.074142 GCACTGCTTTGTTTGAGAAAATTAGG 60.074 38.462 0.00 0.00 0.00 2.69
3770 5094 6.980397 CACTGCTTTGTTTGAGAAAATTAGGT 59.020 34.615 0.00 0.00 0.00 3.08
3771 5095 7.168135 CACTGCTTTGTTTGAGAAAATTAGGTC 59.832 37.037 0.00 0.00 0.00 3.85
3772 5096 7.106439 TGCTTTGTTTGAGAAAATTAGGTCA 57.894 32.000 0.00 0.00 0.00 4.02
3773 5097 7.202526 TGCTTTGTTTGAGAAAATTAGGTCAG 58.797 34.615 0.00 0.00 0.00 3.51
3774 5098 6.144563 GCTTTGTTTGAGAAAATTAGGTCAGC 59.855 38.462 0.00 0.00 0.00 4.26
3775 5099 6.707440 TTGTTTGAGAAAATTAGGTCAGCA 57.293 33.333 0.00 0.00 0.00 4.41
3776 5100 6.072112 TGTTTGAGAAAATTAGGTCAGCAC 57.928 37.500 0.00 0.00 0.00 4.40
3817 5141 1.897133 TCGTGTGTAGGCTTGGTACAT 59.103 47.619 0.00 0.00 39.30 2.29
3818 5142 3.090790 TCGTGTGTAGGCTTGGTACATA 58.909 45.455 0.00 0.00 39.30 2.29
3819 5143 3.510753 TCGTGTGTAGGCTTGGTACATAA 59.489 43.478 0.00 0.00 39.30 1.90
3820 5144 3.615496 CGTGTGTAGGCTTGGTACATAAC 59.385 47.826 0.00 0.00 39.30 1.89
3821 5145 4.619863 CGTGTGTAGGCTTGGTACATAACT 60.620 45.833 0.00 0.00 39.30 2.24
3857 5186 6.183359 GCATCGTGCGTTATAGATAGTCTTTC 60.183 42.308 0.00 0.00 31.71 2.62
3937 5267 3.863142 TTGTACCGAAAGAGGCTAGTC 57.137 47.619 0.00 0.00 33.69 2.59
3956 5286 4.942852 AGTCATAGCTGTGCTGTATCTTC 58.057 43.478 5.44 0.00 40.10 2.87
3965 5295 4.598062 TGTGCTGTATCTTCGATCTTACG 58.402 43.478 0.00 0.00 0.00 3.18
3970 5300 6.183360 TGCTGTATCTTCGATCTTACGGTAAA 60.183 38.462 1.79 0.00 0.00 2.01
3977 5307 7.967178 TCTTCGATCTTACGGTAAAATTTTCC 58.033 34.615 6.72 7.86 0.00 3.13
3982 5312 8.062448 CGATCTTACGGTAAAATTTTCCAGATC 58.938 37.037 20.90 20.90 32.84 2.75
3989 5319 6.039270 CGGTAAAATTTTCCAGATCAGCCATA 59.961 38.462 6.72 0.00 0.00 2.74
3991 5321 9.077885 GGTAAAATTTTCCAGATCAGCCATATA 57.922 33.333 6.72 0.00 0.00 0.86
3992 5322 9.899226 GTAAAATTTTCCAGATCAGCCATATAC 57.101 33.333 6.72 0.00 0.00 1.47
3993 5323 8.537728 AAAATTTTCCAGATCAGCCATATACA 57.462 30.769 0.00 0.00 0.00 2.29
4022 5356 8.177119 ACAATTAACAATTAAGGACAAGAGCA 57.823 30.769 0.00 0.00 0.00 4.26
4023 5357 8.806146 ACAATTAACAATTAAGGACAAGAGCAT 58.194 29.630 0.00 0.00 0.00 3.79
4024 5358 9.294030 CAATTAACAATTAAGGACAAGAGCATC 57.706 33.333 0.00 0.00 0.00 3.91
4086 5420 7.290110 CCTTTTTAAGGTTCAGGATGTTTCT 57.710 36.000 0.00 0.00 43.95 2.52
4098 5432 3.840666 AGGATGTTTCTCTTCCACTGCTA 59.159 43.478 0.00 0.00 41.23 3.49
4105 5439 2.037251 TCTCTTCCACTGCTAAAACGCT 59.963 45.455 0.00 0.00 0.00 5.07
4125 5459 0.871722 TTGGCGTGAAGAATGTTCCG 59.128 50.000 0.00 0.00 0.00 4.30
4132 5466 1.338294 TGAAGAATGTTCCGGCGCTTA 60.338 47.619 7.64 0.00 0.00 3.09
4137 5471 1.724582 ATGTTCCGGCGCTTATTGGC 61.725 55.000 7.64 0.00 0.00 4.52
4143 5477 2.407616 GCGCTTATTGGCCGAACC 59.592 61.111 0.00 0.00 39.84 3.62
4149 5483 2.356695 GCTTATTGGCCGAACCGTTAAT 59.643 45.455 0.00 0.00 43.94 1.40
4152 5486 1.587933 TTGGCCGAACCGTTAATGGC 61.588 55.000 13.92 11.44 43.94 4.40
4444 5778 1.071814 TCCGAGGTTTGTTTCCCCG 59.928 57.895 0.00 0.00 0.00 5.73
4450 5784 1.958579 AGGTTTGTTTCCCCGCTTAAC 59.041 47.619 0.00 0.00 0.00 2.01
4455 5789 1.673009 TTTCCCCGCTTAACGCCAG 60.673 57.895 0.00 0.00 41.76 4.85
4491 5825 3.300009 GAAGCATCAACCTGTTTGTTCG 58.700 45.455 0.00 0.00 36.49 3.95
4503 5837 0.685097 TTTGTTCGTCCTGCCTAGCT 59.315 50.000 0.00 0.00 0.00 3.32
4532 5971 5.830000 TCTAGCTTCTAACGCATGTCTTA 57.170 39.130 0.00 0.00 0.00 2.10
4536 5975 3.797256 GCTTCTAACGCATGTCTTATCGT 59.203 43.478 0.00 0.00 36.67 3.73
4541 5980 1.927174 ACGCATGTCTTATCGTCTTGC 59.073 47.619 0.00 0.00 0.00 4.01
4614 6053 1.970917 GCTCTGGGAACGCAATCACG 61.971 60.000 0.00 0.00 39.50 4.35
4671 6110 1.267261 CTGTCCTCGTTCGACAAGTCT 59.733 52.381 0.00 0.00 39.66 3.24
4845 6284 6.270231 AGAAGCCAGTTCTTAGGTAGAAGAAA 59.730 38.462 0.38 0.00 43.54 2.52
4847 6286 5.780793 AGCCAGTTCTTAGGTAGAAGAAAGA 59.219 40.000 0.38 0.00 44.83 2.52
4899 6338 6.744112 TCTCGAAATGGTTGCAAGTAATTTT 58.256 32.000 0.00 0.00 0.00 1.82
4902 6341 6.584563 TCGAAATGGTTGCAAGTAATTTTAGC 59.415 34.615 0.00 0.00 0.00 3.09
4984 6426 9.046296 AGACAAGAGAGTAAAATGTAAACTGTG 57.954 33.333 0.00 0.00 0.00 3.66
5144 6586 3.520290 TTAGTAGAACATCCTGTGGCG 57.480 47.619 0.00 0.00 0.00 5.69
5151 6593 2.315925 ACATCCTGTGGCGATAAGTG 57.684 50.000 0.00 0.00 0.00 3.16
5172 6647 1.007336 GGACCGCGTGTTCACTACAG 61.007 60.000 4.92 0.00 37.45 2.74
5239 6714 2.557924 CCAACAAGCTGCCTGATGTAAA 59.442 45.455 5.06 0.00 0.00 2.01
5240 6715 3.366679 CCAACAAGCTGCCTGATGTAAAG 60.367 47.826 5.06 0.00 0.00 1.85
5241 6716 1.815003 ACAAGCTGCCTGATGTAAAGC 59.185 47.619 5.06 0.00 0.00 3.51
5242 6717 1.814394 CAAGCTGCCTGATGTAAAGCA 59.186 47.619 0.00 0.00 36.32 3.91
5246 6721 2.703416 CTGCCTGATGTAAAGCAGTCA 58.297 47.619 0.00 0.00 46.00 3.41
5251 6726 1.702401 TGATGTAAAGCAGTCACCCCA 59.298 47.619 0.00 0.00 0.00 4.96
5252 6727 2.084546 GATGTAAAGCAGTCACCCCAC 58.915 52.381 0.00 0.00 0.00 4.61
5253 6728 1.136828 TGTAAAGCAGTCACCCCACT 58.863 50.000 0.00 0.00 0.00 4.00
5254 6729 2.331166 TGTAAAGCAGTCACCCCACTA 58.669 47.619 0.00 0.00 0.00 2.74
5255 6730 2.038033 TGTAAAGCAGTCACCCCACTAC 59.962 50.000 0.00 0.00 0.00 2.73
5256 6731 0.034896 AAAGCAGTCACCCCACTACG 59.965 55.000 0.00 0.00 0.00 3.51
5257 6732 1.827399 AAGCAGTCACCCCACTACGG 61.827 60.000 0.00 0.00 0.00 4.02
5290 6765 6.118852 GGCCTCACAAATTCTATCTCTTCTT 58.881 40.000 0.00 0.00 0.00 2.52
5291 6766 6.259829 GGCCTCACAAATTCTATCTCTTCTTC 59.740 42.308 0.00 0.00 0.00 2.87
5414 6889 2.310052 CCCACCCCTCTTCATCTTCTTT 59.690 50.000 0.00 0.00 0.00 2.52
5439 6925 1.698506 CCTCCTCGAGTTGCTAGGAT 58.301 55.000 12.31 0.00 37.78 3.24
5457 6943 2.160013 GGATTCGTGTCGTCGTTTGAAG 60.160 50.000 0.00 0.00 0.00 3.02
5458 6944 1.202203 TTCGTGTCGTCGTTTGAAGG 58.798 50.000 0.00 0.00 0.00 3.46
5459 6945 0.381445 TCGTGTCGTCGTTTGAAGGA 59.619 50.000 0.00 0.00 0.00 3.36
5460 6946 0.776451 CGTGTCGTCGTTTGAAGGAG 59.224 55.000 0.00 0.00 0.00 3.69
5577 7090 5.409520 TGAATGCTAACGCTATCATCCAATC 59.590 40.000 0.00 0.00 36.97 2.67
5587 7100 5.494724 GCTATCATCCAATCTAGGCATGAA 58.505 41.667 0.00 0.00 0.00 2.57
5590 7103 7.201714 GCTATCATCCAATCTAGGCATGAATTC 60.202 40.741 0.00 0.00 0.00 2.17
5634 7155 8.364142 GCTAGTTGTTGGACTATCTAGAATCAT 58.636 37.037 0.00 0.00 32.07 2.45
5635 7156 9.689976 CTAGTTGTTGGACTATCTAGAATCATG 57.310 37.037 0.00 0.00 32.07 3.07
5638 7159 5.604231 TGTTGGACTATCTAGAATCATGGCT 59.396 40.000 0.00 0.00 0.00 4.75
5690 7211 3.409026 ACTGAATCTTCGGTTCTTGCT 57.591 42.857 0.00 0.00 44.02 3.91
5711 7232 1.591158 GCAACCGGATGTGTATGTACG 59.409 52.381 9.46 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 2.940514 TGACCATCCTTCCTCTGGTA 57.059 50.000 0.00 0.00 43.23 3.25
154 156 3.673594 CGTAGTTGCTTAGCTAGTGCACT 60.674 47.826 25.12 25.12 42.74 4.40
180 184 3.288381 ACAGCTCCTCCCCCTCCT 61.288 66.667 0.00 0.00 0.00 3.69
215 219 2.352651 CACGATCCAGCGATGAATTTGT 59.647 45.455 0.06 0.00 34.83 2.83
247 251 1.026584 TCCACGTCGTGAGTTGAAGA 58.973 50.000 26.53 10.28 35.23 2.87
263 267 0.830648 CTTTAGCTCGGGGACATCCA 59.169 55.000 0.00 0.00 37.91 3.41
270 274 2.511600 CACGCCTTTAGCTCGGGG 60.512 66.667 10.80 10.80 40.39 5.73
271 275 3.195698 GCACGCCTTTAGCTCGGG 61.196 66.667 0.00 0.00 40.39 5.14
313 317 7.393515 GGATGACCTTTCTGTACCTGTATTTTT 59.606 37.037 0.00 0.00 0.00 1.94
314 318 6.884836 GGATGACCTTTCTGTACCTGTATTTT 59.115 38.462 0.00 0.00 0.00 1.82
319 323 3.521727 AGGATGACCTTTCTGTACCTGT 58.478 45.455 0.00 0.00 45.36 4.00
442 1755 2.884639 GCAACCCTGAGCTCTGTAAAAA 59.115 45.455 16.19 0.00 0.00 1.94
443 1756 2.106511 AGCAACCCTGAGCTCTGTAAAA 59.893 45.455 16.19 0.00 36.00 1.52
449 1762 1.377994 CCAAGCAACCCTGAGCTCT 59.622 57.895 16.19 0.00 40.90 4.09
453 1766 2.270986 GCACCCAAGCAACCCTGAG 61.271 63.158 0.00 0.00 0.00 3.35
459 1772 4.683334 GCGTCGCACCCAAGCAAC 62.683 66.667 13.44 0.00 0.00 4.17
481 1794 0.373716 GTGCGACCTTATTTGCCGAG 59.626 55.000 0.00 0.00 0.00 4.63
482 1795 0.320858 TGTGCGACCTTATTTGCCGA 60.321 50.000 0.00 0.00 0.00 5.54
483 1796 0.179200 GTGTGCGACCTTATTTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
484 1797 0.878416 TGTGTGCGACCTTATTTGCC 59.122 50.000 0.00 0.00 0.00 4.52
485 1798 2.919666 ATGTGTGCGACCTTATTTGC 57.080 45.000 0.00 0.00 0.00 3.68
510 1823 4.273318 AGATTTGATGCAACCTTCCCTAC 58.727 43.478 0.00 0.00 0.00 3.18
533 1846 6.402222 ACACATGAAGCCAAGTTTTACAAAA 58.598 32.000 0.00 0.00 0.00 2.44
570 1883 4.317529 GAGCAATCTCCGAGCTCG 57.682 61.111 29.06 29.06 44.37 5.03
598 1911 6.518395 CGTTACCACTTTATTCAATGTTCACG 59.482 38.462 0.00 0.00 0.00 4.35
659 1972 1.349357 GGATGGGGAGCATCTTAGACC 59.651 57.143 0.00 0.00 33.73 3.85
824 2143 0.951040 GCCGCCGATTATGGAGAAGG 60.951 60.000 0.00 0.00 0.00 3.46
895 2214 1.253100 TCCTCGGGTTGAATTTTGGC 58.747 50.000 0.00 0.00 0.00 4.52
1115 2434 0.034574 ATACAGCCCCAAATCACGCA 60.035 50.000 0.00 0.00 0.00 5.24
1288 2607 3.260884 TGTCAGTCCCTCTACATTTGGTC 59.739 47.826 0.00 0.00 0.00 4.02
1374 2693 1.559682 TGTTAAGAGGGGATGGCAGAC 59.440 52.381 0.00 0.00 0.00 3.51
1379 2698 3.203040 ACCTTGATGTTAAGAGGGGATGG 59.797 47.826 0.00 0.00 33.51 3.51
1477 2796 1.251251 GGCTGGCATTCTTGTCAACT 58.749 50.000 0.00 0.00 36.93 3.16
1602 2921 6.418057 TGTGGGCAACAGAAAATAGAAATT 57.582 33.333 0.00 0.00 33.78 1.82
1844 3163 7.712639 TGAAAATATGGAGAAGGAAGAATCGAG 59.287 37.037 0.00 0.00 0.00 4.04
1994 3314 3.844640 AGGAGAGGGAGCTCTCTTTATC 58.155 50.000 19.43 15.70 46.61 1.75
2035 3355 4.461081 TCCAAACACACCCTAATACAATGC 59.539 41.667 0.00 0.00 0.00 3.56
2042 3362 2.290641 TGCGATCCAAACACACCCTAAT 60.291 45.455 0.00 0.00 0.00 1.73
2043 3363 1.072489 TGCGATCCAAACACACCCTAA 59.928 47.619 0.00 0.00 0.00 2.69
2044 3364 0.687920 TGCGATCCAAACACACCCTA 59.312 50.000 0.00 0.00 0.00 3.53
2045 3365 0.606401 CTGCGATCCAAACACACCCT 60.606 55.000 0.00 0.00 0.00 4.34
2046 3366 1.875963 CTGCGATCCAAACACACCC 59.124 57.895 0.00 0.00 0.00 4.61
2047 3367 1.210155 GCTGCGATCCAAACACACC 59.790 57.895 0.00 0.00 0.00 4.16
2048 3368 1.210155 GGCTGCGATCCAAACACAC 59.790 57.895 0.00 0.00 0.00 3.82
2049 3369 0.608856 ATGGCTGCGATCCAAACACA 60.609 50.000 0.00 0.00 37.13 3.72
2050 3370 0.179156 CATGGCTGCGATCCAAACAC 60.179 55.000 0.00 0.00 37.13 3.32
2051 3371 0.322366 TCATGGCTGCGATCCAAACA 60.322 50.000 0.00 0.00 37.13 2.83
2052 3372 0.379669 CTCATGGCTGCGATCCAAAC 59.620 55.000 0.00 0.00 37.13 2.93
2053 3373 1.378882 GCTCATGGCTGCGATCCAAA 61.379 55.000 0.00 0.00 37.13 3.28
2054 3374 1.820906 GCTCATGGCTGCGATCCAA 60.821 57.895 0.00 0.00 37.13 3.53
2055 3375 2.203112 GCTCATGGCTGCGATCCA 60.203 61.111 0.00 0.00 38.06 3.41
2064 3384 2.638480 TTGGTATGGTAGCTCATGGC 57.362 50.000 0.00 0.00 42.19 4.40
2083 3403 1.137872 TGCCAGTCAACGCCAATTTTT 59.862 42.857 0.00 0.00 0.00 1.94
2084 3404 0.749649 TGCCAGTCAACGCCAATTTT 59.250 45.000 0.00 0.00 0.00 1.82
2085 3405 0.314935 CTGCCAGTCAACGCCAATTT 59.685 50.000 0.00 0.00 0.00 1.82
2086 3406 1.959085 CTGCCAGTCAACGCCAATT 59.041 52.632 0.00 0.00 0.00 2.32
2087 3407 2.629656 GCTGCCAGTCAACGCCAAT 61.630 57.895 0.00 0.00 0.00 3.16
2088 3408 3.286751 GCTGCCAGTCAACGCCAA 61.287 61.111 0.00 0.00 0.00 4.52
2089 3409 2.462125 TATGCTGCCAGTCAACGCCA 62.462 55.000 0.00 0.00 0.00 5.69
2090 3410 1.709147 CTATGCTGCCAGTCAACGCC 61.709 60.000 0.00 0.00 0.00 5.68
2091 3411 1.709147 CCTATGCTGCCAGTCAACGC 61.709 60.000 0.00 0.00 0.00 4.84
2092 3412 1.709147 GCCTATGCTGCCAGTCAACG 61.709 60.000 0.00 0.00 33.53 4.10
2093 3413 1.709147 CGCCTATGCTGCCAGTCAAC 61.709 60.000 0.00 0.00 34.43 3.18
2094 3414 1.450134 CGCCTATGCTGCCAGTCAA 60.450 57.895 0.00 0.00 34.43 3.18
2095 3415 2.187685 CGCCTATGCTGCCAGTCA 59.812 61.111 0.00 0.00 34.43 3.41
2096 3416 2.176273 CACGCCTATGCTGCCAGTC 61.176 63.158 0.00 0.00 34.43 3.51
2097 3417 2.124983 CACGCCTATGCTGCCAGT 60.125 61.111 0.00 0.00 34.43 4.00
2098 3418 3.580193 GCACGCCTATGCTGCCAG 61.580 66.667 0.00 0.00 42.62 4.85
2101 3421 3.039202 AAACGCACGCCTATGCTGC 62.039 57.895 0.00 0.00 43.80 5.25
2102 3422 1.226101 CAAACGCACGCCTATGCTG 60.226 57.895 1.31 0.00 43.80 4.41
2103 3423 2.398554 CCAAACGCACGCCTATGCT 61.399 57.895 1.31 0.00 43.80 3.79
2104 3424 2.100216 CCAAACGCACGCCTATGC 59.900 61.111 0.00 0.00 42.48 3.14
2105 3425 0.239879 AAACCAAACGCACGCCTATG 59.760 50.000 0.00 0.00 0.00 2.23
2106 3426 0.239879 CAAACCAAACGCACGCCTAT 59.760 50.000 0.00 0.00 0.00 2.57
2107 3427 1.649815 CAAACCAAACGCACGCCTA 59.350 52.632 0.00 0.00 0.00 3.93
2108 3428 2.411290 CAAACCAAACGCACGCCT 59.589 55.556 0.00 0.00 0.00 5.52
2109 3429 2.656973 CCAAACCAAACGCACGCC 60.657 61.111 0.00 0.00 0.00 5.68
2110 3430 2.103340 ACCAAACCAAACGCACGC 59.897 55.556 0.00 0.00 0.00 5.34
2111 3431 2.227568 GCACCAAACCAAACGCACG 61.228 57.895 0.00 0.00 0.00 5.34
2112 3432 1.880796 GGCACCAAACCAAACGCAC 60.881 57.895 0.00 0.00 0.00 5.34
2113 3433 1.888436 TTGGCACCAAACCAAACGCA 61.888 50.000 0.00 0.00 44.11 5.24
2114 3434 1.153549 TTGGCACCAAACCAAACGC 60.154 52.632 0.00 0.00 44.11 4.84
2119 3439 2.122768 AGGAAAATTGGCACCAAACCA 58.877 42.857 6.14 0.00 39.55 3.67
2120 3440 2.928801 AGGAAAATTGGCACCAAACC 57.071 45.000 6.14 7.94 39.55 3.27
2121 3441 3.325870 GCTAGGAAAATTGGCACCAAAC 58.674 45.455 6.14 0.00 39.55 2.93
2122 3442 2.301583 GGCTAGGAAAATTGGCACCAAA 59.698 45.455 6.14 0.00 39.55 3.28
2123 3443 1.899142 GGCTAGGAAAATTGGCACCAA 59.101 47.619 4.24 4.24 40.47 3.67
2124 3444 1.555967 GGCTAGGAAAATTGGCACCA 58.444 50.000 0.00 0.00 0.00 4.17
2125 3445 0.455815 CGGCTAGGAAAATTGGCACC 59.544 55.000 0.00 0.00 0.00 5.01
2126 3446 0.179137 GCGGCTAGGAAAATTGGCAC 60.179 55.000 0.00 0.00 0.00 5.01
2127 3447 0.323360 AGCGGCTAGGAAAATTGGCA 60.323 50.000 0.00 0.00 0.00 4.92
2128 3448 0.101219 CAGCGGCTAGGAAAATTGGC 59.899 55.000 0.26 0.00 0.00 4.52
2129 3449 0.101219 GCAGCGGCTAGGAAAATTGG 59.899 55.000 0.26 0.00 36.96 3.16
2130 3450 0.101219 GGCAGCGGCTAGGAAAATTG 59.899 55.000 9.17 0.00 40.87 2.32
2131 3451 0.323360 TGGCAGCGGCTAGGAAAATT 60.323 50.000 9.17 0.00 40.87 1.82
2132 3452 0.323360 TTGGCAGCGGCTAGGAAAAT 60.323 50.000 9.17 0.00 40.87 1.82
2133 3453 0.323360 ATTGGCAGCGGCTAGGAAAA 60.323 50.000 9.17 0.00 40.87 2.29
2134 3454 0.323360 AATTGGCAGCGGCTAGGAAA 60.323 50.000 9.17 0.00 40.87 3.13
2135 3455 0.323360 AAATTGGCAGCGGCTAGGAA 60.323 50.000 9.17 0.00 40.87 3.36
2136 3456 0.323360 AAAATTGGCAGCGGCTAGGA 60.323 50.000 9.17 0.00 40.87 2.94
2137 3457 0.532115 AAAAATTGGCAGCGGCTAGG 59.468 50.000 9.17 0.00 40.87 3.02
2153 3473 6.814146 GTGAAAAATGTACTGGTGACCAAAAA 59.186 34.615 5.53 0.00 30.80 1.94
2154 3474 6.334202 GTGAAAAATGTACTGGTGACCAAAA 58.666 36.000 5.53 0.00 30.80 2.44
2155 3475 5.449314 CGTGAAAAATGTACTGGTGACCAAA 60.449 40.000 5.53 0.00 30.80 3.28
2156 3476 4.035792 CGTGAAAAATGTACTGGTGACCAA 59.964 41.667 5.53 0.00 30.80 3.67
2157 3477 3.562141 CGTGAAAAATGTACTGGTGACCA 59.438 43.478 3.40 3.40 0.00 4.02
2158 3478 3.608474 GCGTGAAAAATGTACTGGTGACC 60.608 47.826 0.00 0.00 0.00 4.02
2159 3479 3.551551 GCGTGAAAAATGTACTGGTGAC 58.448 45.455 0.00 0.00 0.00 3.67
2160 3480 2.550606 GGCGTGAAAAATGTACTGGTGA 59.449 45.455 0.00 0.00 0.00 4.02
2161 3481 2.351350 GGGCGTGAAAAATGTACTGGTG 60.351 50.000 0.00 0.00 0.00 4.17
2162 3482 1.883926 GGGCGTGAAAAATGTACTGGT 59.116 47.619 0.00 0.00 0.00 4.00
2163 3483 1.883275 TGGGCGTGAAAAATGTACTGG 59.117 47.619 0.00 0.00 0.00 4.00
2164 3484 3.500982 CATGGGCGTGAAAAATGTACTG 58.499 45.455 0.00 0.00 0.00 2.74
2165 3485 2.094752 GCATGGGCGTGAAAAATGTACT 60.095 45.455 0.00 0.00 0.00 2.73
2166 3486 2.258755 GCATGGGCGTGAAAAATGTAC 58.741 47.619 0.00 0.00 0.00 2.90
2167 3487 2.645730 GCATGGGCGTGAAAAATGTA 57.354 45.000 0.00 0.00 0.00 2.29
2168 3488 3.512978 GCATGGGCGTGAAAAATGT 57.487 47.368 0.00 0.00 0.00 2.71
2182 3502 3.646976 CCAGCTCGCCATCGCATG 61.647 66.667 0.00 0.00 35.26 4.06
2206 3526 1.021202 TAAATTGGCGCAGGAATCCG 58.979 50.000 10.83 0.00 0.00 4.18
2207 3527 3.383761 CAATAAATTGGCGCAGGAATCC 58.616 45.455 10.83 0.00 34.22 3.01
2219 3539 1.002468 CGAGGGCGAGCCAATAAATTG 60.002 52.381 16.65 0.00 40.82 2.32
2220 3540 1.308998 CGAGGGCGAGCCAATAAATT 58.691 50.000 16.65 0.00 40.82 1.82
2221 3541 0.180406 ACGAGGGCGAGCCAATAAAT 59.820 50.000 16.65 0.00 41.64 1.40
2222 3542 0.035820 AACGAGGGCGAGCCAATAAA 60.036 50.000 16.65 0.00 41.64 1.40
2223 3543 0.035820 AAACGAGGGCGAGCCAATAA 60.036 50.000 16.65 0.00 41.64 1.40
2224 3544 0.742990 CAAACGAGGGCGAGCCAATA 60.743 55.000 16.65 0.00 41.64 1.90
2225 3545 2.040544 CAAACGAGGGCGAGCCAAT 61.041 57.895 16.65 3.48 41.64 3.16
2226 3546 2.668212 CAAACGAGGGCGAGCCAA 60.668 61.111 16.65 0.00 41.64 4.52
2227 3547 4.697756 CCAAACGAGGGCGAGCCA 62.698 66.667 16.65 0.00 41.64 4.75
2228 3548 4.699522 ACCAAACGAGGGCGAGCC 62.700 66.667 5.37 5.37 41.64 4.70
2229 3549 3.119096 GACCAAACGAGGGCGAGC 61.119 66.667 0.00 0.00 41.64 5.03
2234 3554 4.016706 AGCCCGACCAAACGAGGG 62.017 66.667 0.00 0.00 46.44 4.30
2235 3555 2.742372 CAGCCCGACCAAACGAGG 60.742 66.667 0.00 0.00 35.09 4.63
2236 3556 2.742372 CCAGCCCGACCAAACGAG 60.742 66.667 0.00 0.00 35.09 4.18
2239 3559 4.660938 AGGCCAGCCCGACCAAAC 62.661 66.667 5.01 0.00 39.21 2.93
2240 3560 4.659172 CAGGCCAGCCCGACCAAA 62.659 66.667 5.01 0.00 39.21 3.28
2252 3572 4.966787 TTGGTTGTCGCCCAGGCC 62.967 66.667 2.37 0.00 37.98 5.19
2253 3573 2.909965 TTTGGTTGTCGCCCAGGC 60.910 61.111 0.00 0.00 32.49 4.85
2254 3574 1.826054 TGTTTGGTTGTCGCCCAGG 60.826 57.895 0.00 0.00 32.49 4.45
2255 3575 1.358759 GTGTTTGGTTGTCGCCCAG 59.641 57.895 0.00 0.00 32.49 4.45
2256 3576 1.378646 TGTGTTTGGTTGTCGCCCA 60.379 52.632 0.00 0.00 0.00 5.36
2257 3577 1.065109 GTGTGTTTGGTTGTCGCCC 59.935 57.895 0.00 0.00 0.00 6.13
2258 3578 1.298041 CGTGTGTTTGGTTGTCGCC 60.298 57.895 0.00 0.00 0.00 5.54
2259 3579 1.937362 GCGTGTGTTTGGTTGTCGC 60.937 57.895 0.00 0.00 35.86 5.19
2260 3580 0.098025 AAGCGTGTGTTTGGTTGTCG 59.902 50.000 0.00 0.00 0.00 4.35
2261 3581 2.353579 ACTAAGCGTGTGTTTGGTTGTC 59.646 45.455 0.00 0.00 0.00 3.18
2262 3582 2.361789 ACTAAGCGTGTGTTTGGTTGT 58.638 42.857 0.00 0.00 0.00 3.32
2263 3583 3.414549 AACTAAGCGTGTGTTTGGTTG 57.585 42.857 0.00 0.00 38.29 3.77
2264 3584 3.940221 TGTAACTAAGCGTGTGTTTGGTT 59.060 39.130 0.16 0.16 41.51 3.67
2265 3585 3.533547 TGTAACTAAGCGTGTGTTTGGT 58.466 40.909 0.00 0.00 31.51 3.67
2266 3586 3.606153 GCTGTAACTAAGCGTGTGTTTGG 60.606 47.826 0.00 0.00 0.00 3.28
2267 3587 3.247648 AGCTGTAACTAAGCGTGTGTTTG 59.752 43.478 0.00 0.00 45.59 2.93
2268 3588 3.463944 AGCTGTAACTAAGCGTGTGTTT 58.536 40.909 0.00 0.00 45.59 2.83
2269 3589 3.107642 AGCTGTAACTAAGCGTGTGTT 57.892 42.857 0.00 0.00 45.59 3.32
2270 3590 2.814280 AGCTGTAACTAAGCGTGTGT 57.186 45.000 0.00 0.00 45.59 3.72
2271 3591 3.834610 AGTAGCTGTAACTAAGCGTGTG 58.165 45.455 0.00 0.00 45.59 3.82
2272 3592 4.940046 TCTAGTAGCTGTAACTAAGCGTGT 59.060 41.667 0.00 0.00 45.59 4.49
2273 3593 5.481200 TCTAGTAGCTGTAACTAAGCGTG 57.519 43.478 0.00 0.00 45.59 5.34
2274 3594 5.738118 CTCTAGTAGCTGTAACTAAGCGT 57.262 43.478 0.00 0.00 45.59 5.07
2302 3625 6.366604 TCATGCGTTGTCGTTTTCTATTTCTA 59.633 34.615 0.00 0.00 39.49 2.10
2319 3642 1.003118 TGCTCCTTTAGGTCATGCGTT 59.997 47.619 0.00 0.00 36.34 4.84
2349 3672 1.501170 TCTTTTGGGGTTGATGGGTGA 59.499 47.619 0.00 0.00 0.00 4.02
2406 3729 3.118038 AGTTGGAGTCTGTTGGCTTTGTA 60.118 43.478 0.00 0.00 0.00 2.41
2440 3763 4.293494 TGGAGATCTGGCTTGTAGATTCT 58.707 43.478 0.00 0.00 35.14 2.40
2443 3766 2.971330 CCTGGAGATCTGGCTTGTAGAT 59.029 50.000 0.00 0.00 37.59 1.98
2549 3872 7.651704 TGCAAAGAGAAGCAAAGGTAAAATAAC 59.348 33.333 0.00 0.00 37.90 1.89
2564 3887 9.286946 GACTGATAAATCAATTGCAAAGAGAAG 57.713 33.333 1.71 0.00 36.18 2.85
2776 4100 2.780010 CCTGGGTTACCCTTCTCATCAT 59.220 50.000 22.29 0.00 45.70 2.45
3006 4330 1.492176 CTGGCTACCACCCATTGATCT 59.508 52.381 0.00 0.00 0.00 2.75
3161 4485 7.064134 CCGTTTGCTTGTTGTGTATAGAATAGA 59.936 37.037 0.00 0.00 0.00 1.98
3185 4509 3.486841 CACTTTCAAGCACAAATTGACCG 59.513 43.478 0.00 0.00 36.44 4.79
3357 4681 0.673437 TCTTGCAAAGGGCCTTTTCG 59.327 50.000 28.54 19.05 46.24 3.46
3423 4747 2.355513 CCCTTTCTCTGCAGTGCTGTAT 60.356 50.000 17.60 0.00 0.00 2.29
3618 4942 0.952497 CACTGACTGCTCGCCACATT 60.952 55.000 0.00 0.00 0.00 2.71
3654 4978 9.368674 CTTACCTCTGCATCATAGAATATCAAG 57.631 37.037 0.00 0.00 0.00 3.02
3682 5006 1.734465 GCAGTGATGACAAGGTACAGC 59.266 52.381 0.00 0.00 0.00 4.40
3683 5007 3.325293 AGCAGTGATGACAAGGTACAG 57.675 47.619 0.00 0.00 0.00 2.74
3729 5053 4.019312 TGCAGATGACCAGCGCCA 62.019 61.111 2.29 0.00 0.00 5.69
3730 5054 3.503363 GTGCAGATGACCAGCGCC 61.503 66.667 2.29 0.00 32.93 6.53
3731 5055 2.435586 AGTGCAGATGACCAGCGC 60.436 61.111 0.00 0.00 38.96 5.92
3732 5056 2.747822 GCAGTGCAGATGACCAGCG 61.748 63.158 11.09 0.00 0.00 5.18
3733 5057 0.959372 AAGCAGTGCAGATGACCAGC 60.959 55.000 19.20 0.00 0.00 4.85
3734 5058 1.199327 CAAAGCAGTGCAGATGACCAG 59.801 52.381 19.20 0.00 0.00 4.00
3735 5059 1.241165 CAAAGCAGTGCAGATGACCA 58.759 50.000 19.20 0.00 0.00 4.02
3736 5060 1.242076 ACAAAGCAGTGCAGATGACC 58.758 50.000 19.20 0.00 0.00 4.02
3737 5061 3.047796 CAAACAAAGCAGTGCAGATGAC 58.952 45.455 19.20 0.00 0.00 3.06
3738 5062 2.950975 TCAAACAAAGCAGTGCAGATGA 59.049 40.909 19.20 12.88 0.00 2.92
3739 5063 3.004002 TCTCAAACAAAGCAGTGCAGATG 59.996 43.478 19.20 14.80 0.00 2.90
3740 5064 3.216800 TCTCAAACAAAGCAGTGCAGAT 58.783 40.909 19.20 0.00 0.00 2.90
3741 5065 2.642427 TCTCAAACAAAGCAGTGCAGA 58.358 42.857 19.20 5.63 0.00 4.26
3742 5066 3.425577 TTCTCAAACAAAGCAGTGCAG 57.574 42.857 19.20 9.27 0.00 4.41
3743 5067 3.865011 TTTCTCAAACAAAGCAGTGCA 57.135 38.095 19.20 0.00 0.00 4.57
3744 5068 5.723492 AATTTTCTCAAACAAAGCAGTGC 57.277 34.783 7.13 7.13 0.00 4.40
3745 5069 6.980397 ACCTAATTTTCTCAAACAAAGCAGTG 59.020 34.615 0.00 0.00 0.00 3.66
3746 5070 7.112452 ACCTAATTTTCTCAAACAAAGCAGT 57.888 32.000 0.00 0.00 0.00 4.40
3747 5071 7.202526 TGACCTAATTTTCTCAAACAAAGCAG 58.797 34.615 0.00 0.00 0.00 4.24
3748 5072 7.106439 TGACCTAATTTTCTCAAACAAAGCA 57.894 32.000 0.00 0.00 0.00 3.91
3749 5073 6.144563 GCTGACCTAATTTTCTCAAACAAAGC 59.855 38.462 0.00 0.00 0.00 3.51
3750 5074 7.168135 GTGCTGACCTAATTTTCTCAAACAAAG 59.832 37.037 0.00 0.00 0.00 2.77
3751 5075 6.978080 GTGCTGACCTAATTTTCTCAAACAAA 59.022 34.615 0.00 0.00 0.00 2.83
3752 5076 6.321181 AGTGCTGACCTAATTTTCTCAAACAA 59.679 34.615 0.00 0.00 0.00 2.83
3753 5077 5.827797 AGTGCTGACCTAATTTTCTCAAACA 59.172 36.000 0.00 0.00 0.00 2.83
3754 5078 6.145535 CAGTGCTGACCTAATTTTCTCAAAC 58.854 40.000 0.00 0.00 0.00 2.93
3755 5079 5.241506 CCAGTGCTGACCTAATTTTCTCAAA 59.758 40.000 0.02 0.00 0.00 2.69
3756 5080 4.761739 CCAGTGCTGACCTAATTTTCTCAA 59.238 41.667 0.02 0.00 0.00 3.02
3757 5081 4.326826 CCAGTGCTGACCTAATTTTCTCA 58.673 43.478 0.02 0.00 0.00 3.27
3758 5082 3.127721 GCCAGTGCTGACCTAATTTTCTC 59.872 47.826 0.02 0.00 33.53 2.87
3759 5083 3.084786 GCCAGTGCTGACCTAATTTTCT 58.915 45.455 0.02 0.00 33.53 2.52
3760 5084 2.159517 CGCCAGTGCTGACCTAATTTTC 60.160 50.000 0.02 0.00 34.43 2.29
3761 5085 1.812571 CGCCAGTGCTGACCTAATTTT 59.187 47.619 0.02 0.00 34.43 1.82
3762 5086 1.453155 CGCCAGTGCTGACCTAATTT 58.547 50.000 0.02 0.00 34.43 1.82
3763 5087 1.026718 GCGCCAGTGCTGACCTAATT 61.027 55.000 0.00 0.00 34.43 1.40
3764 5088 1.450312 GCGCCAGTGCTGACCTAAT 60.450 57.895 0.00 0.00 34.43 1.73
3765 5089 2.047274 GCGCCAGTGCTGACCTAA 60.047 61.111 0.00 0.00 34.43 2.69
3766 5090 2.997315 AGCGCCAGTGCTGACCTA 60.997 61.111 2.29 0.00 45.28 3.08
3773 5097 3.503363 GATGACCAGCGCCAGTGC 61.503 66.667 2.29 0.00 0.00 4.40
3774 5098 2.821366 GGATGACCAGCGCCAGTG 60.821 66.667 2.29 0.00 35.97 3.66
3775 5099 4.457496 CGGATGACCAGCGCCAGT 62.457 66.667 2.29 0.15 35.59 4.00
3817 5141 4.740268 CACGATGCCAGTACAGTAAGTTA 58.260 43.478 0.00 0.00 0.00 2.24
3818 5142 3.585862 CACGATGCCAGTACAGTAAGTT 58.414 45.455 0.00 0.00 0.00 2.66
3819 5143 2.674177 GCACGATGCCAGTACAGTAAGT 60.674 50.000 0.00 0.00 37.42 2.24
3820 5144 1.927174 GCACGATGCCAGTACAGTAAG 59.073 52.381 0.00 0.00 37.42 2.34
3821 5145 1.734377 CGCACGATGCCAGTACAGTAA 60.734 52.381 0.00 0.00 41.12 2.24
3905 5235 9.590451 CCTCTTTCGGTACAAACAATATTAGTA 57.410 33.333 0.00 0.00 0.00 1.82
3908 5238 7.107542 AGCCTCTTTCGGTACAAACAATATTA 58.892 34.615 0.00 0.00 0.00 0.98
3909 5239 5.944007 AGCCTCTTTCGGTACAAACAATATT 59.056 36.000 0.00 0.00 0.00 1.28
3915 5245 3.922910 ACTAGCCTCTTTCGGTACAAAC 58.077 45.455 0.00 0.00 0.00 2.93
3916 5246 3.575256 TGACTAGCCTCTTTCGGTACAAA 59.425 43.478 0.00 0.00 0.00 2.83
3920 5250 3.568853 GCTATGACTAGCCTCTTTCGGTA 59.431 47.826 0.00 0.00 43.90 4.02
3937 5267 3.969899 TCGAAGATACAGCACAGCTATG 58.030 45.455 0.00 0.00 36.40 2.23
3947 5277 8.798748 ATTTTACCGTAAGATCGAAGATACAG 57.201 34.615 0.00 0.00 45.12 2.74
3956 5286 7.298507 TCTGGAAAATTTTACCGTAAGATCG 57.701 36.000 10.68 0.00 43.02 3.69
3965 5295 5.659440 TGGCTGATCTGGAAAATTTTACC 57.341 39.130 10.68 10.67 0.00 2.85
3970 5300 7.293073 AGTGTATATGGCTGATCTGGAAAATT 58.707 34.615 1.46 0.00 0.00 1.82
3977 5307 8.613060 AATTGTTAGTGTATATGGCTGATCTG 57.387 34.615 0.00 0.00 0.00 2.90
4066 5400 6.715264 GGAAGAGAAACATCCTGAACCTTAAA 59.285 38.462 0.00 0.00 34.02 1.52
4086 5420 2.543777 AGCGTTTTAGCAGTGGAAGA 57.456 45.000 0.00 0.00 40.15 2.87
4105 5439 1.265635 CGGAACATTCTTCACGCCAAA 59.734 47.619 0.00 0.00 0.00 3.28
4125 5459 2.407616 GTTCGGCCAATAAGCGCC 59.592 61.111 2.29 0.00 42.05 6.53
4132 5466 1.099689 CCATTAACGGTTCGGCCAAT 58.900 50.000 2.24 0.00 36.97 3.16
4137 5471 1.426041 CCTCGCCATTAACGGTTCGG 61.426 60.000 0.00 0.00 0.00 4.30
4143 5477 0.179200 GTTGCACCTCGCCATTAACG 60.179 55.000 0.00 0.00 41.33 3.18
4149 5483 1.597854 CAGAAGTTGCACCTCGCCA 60.598 57.895 0.00 0.00 41.33 5.69
4152 5486 1.151668 CCTTCAGAAGTTGCACCTCG 58.848 55.000 9.41 0.00 0.00 4.63
4444 5778 0.863144 TCGTCAAACTGGCGTTAAGC 59.137 50.000 0.11 0.00 46.84 3.09
4455 5789 1.663643 TGCTTCCGCATATCGTCAAAC 59.336 47.619 0.00 0.00 42.25 2.93
4480 5814 0.535102 AGGCAGGACGAACAAACAGG 60.535 55.000 0.00 0.00 0.00 4.00
4491 5825 5.393678 GCTAGATAATGTAGCTAGGCAGGAC 60.394 48.000 9.06 0.00 43.22 3.85
4503 5837 7.658261 ACATGCGTTAGAAGCTAGATAATGTA 58.342 34.615 0.00 0.00 35.28 2.29
4532 5971 2.221169 TGCAGAAAACAGCAAGACGAT 58.779 42.857 0.00 0.00 37.90 3.73
4536 5975 2.555325 CTGGATGCAGAAAACAGCAAGA 59.445 45.455 8.85 0.00 44.88 3.02
4541 5980 6.053650 TGAGATATCTGGATGCAGAAAACAG 58.946 40.000 21.52 0.00 34.56 3.16
4602 6041 1.006832 AGGCATACGTGATTGCGTTC 58.993 50.000 0.00 0.00 43.04 3.95
4671 6110 3.243301 GCTTATCGGACGACTTGTATCCA 60.243 47.826 0.00 0.00 32.35 3.41
4845 6284 3.460648 GCGAGTTGCAACCCTATCT 57.539 52.632 25.62 6.19 45.45 1.98
4899 6338 3.709653 CACACTACATCCCCTAAAGGCTA 59.290 47.826 0.00 0.00 0.00 3.93
4902 6341 3.517901 TCACACACTACATCCCCTAAAGG 59.482 47.826 0.00 0.00 0.00 3.11
4961 6402 8.283291 GTCCACAGTTTACATTTTACTCTCTTG 58.717 37.037 0.00 0.00 0.00 3.02
4962 6403 8.211629 AGTCCACAGTTTACATTTTACTCTCTT 58.788 33.333 0.00 0.00 0.00 2.85
4963 6404 7.736893 AGTCCACAGTTTACATTTTACTCTCT 58.263 34.615 0.00 0.00 0.00 3.10
4964 6405 7.656137 TGAGTCCACAGTTTACATTTTACTCTC 59.344 37.037 0.00 0.00 32.75 3.20
4965 6406 7.506114 TGAGTCCACAGTTTACATTTTACTCT 58.494 34.615 0.00 0.00 32.75 3.24
4984 6426 2.616510 CCCAGTCCACAAATCTGAGTCC 60.617 54.545 0.00 0.00 0.00 3.85
5098 6540 6.183360 ACAAAGCCAGAGAATTGATTGTCAAA 60.183 34.615 4.05 0.00 40.12 2.69
5099 6541 5.302568 ACAAAGCCAGAGAATTGATTGTCAA 59.697 36.000 4.05 0.00 41.09 3.18
5100 6542 4.828939 ACAAAGCCAGAGAATTGATTGTCA 59.171 37.500 4.05 0.00 32.96 3.58
5101 6543 5.382618 ACAAAGCCAGAGAATTGATTGTC 57.617 39.130 0.00 0.00 0.00 3.18
5102 6544 5.796424 AACAAAGCCAGAGAATTGATTGT 57.204 34.783 0.00 0.00 0.00 2.71
5103 6545 7.373493 ACTAAACAAAGCCAGAGAATTGATTG 58.627 34.615 0.00 0.00 0.00 2.67
5104 6546 7.530426 ACTAAACAAAGCCAGAGAATTGATT 57.470 32.000 0.00 0.00 0.00 2.57
5105 6547 8.103305 TCTACTAAACAAAGCCAGAGAATTGAT 58.897 33.333 0.00 0.00 0.00 2.57
5106 6548 7.450074 TCTACTAAACAAAGCCAGAGAATTGA 58.550 34.615 0.00 0.00 0.00 2.57
5107 6549 7.672983 TCTACTAAACAAAGCCAGAGAATTG 57.327 36.000 0.00 0.00 0.00 2.32
5144 6586 0.389426 ACACGCGGTCCACACTTATC 60.389 55.000 12.47 0.00 0.00 1.75
5151 6593 1.007038 TAGTGAACACGCGGTCCAC 60.007 57.895 12.47 10.11 36.20 4.02
5239 6714 2.283529 CCGTAGTGGGGTGACTGCT 61.284 63.158 0.00 0.00 0.00 4.24
5240 6715 1.252904 TACCGTAGTGGGGTGACTGC 61.253 60.000 0.00 0.00 44.64 4.40
5241 6716 0.529378 GTACCGTAGTGGGGTGACTG 59.471 60.000 0.00 0.00 44.64 3.51
5242 6717 0.962356 CGTACCGTAGTGGGGTGACT 60.962 60.000 0.00 0.00 44.64 3.41
5243 6718 1.508088 CGTACCGTAGTGGGGTGAC 59.492 63.158 0.00 0.00 44.64 3.67
5244 6719 1.678635 CCGTACCGTAGTGGGGTGA 60.679 63.158 0.00 0.00 44.64 4.02
5245 6720 2.713967 CCCGTACCGTAGTGGGGTG 61.714 68.421 7.63 0.00 44.64 4.61
5246 6721 2.228841 ATCCCGTACCGTAGTGGGGT 62.229 60.000 13.51 5.99 44.64 4.95
5251 6726 2.129785 GGCCATCCCGTACCGTAGT 61.130 63.158 0.00 0.00 0.00 2.73
5252 6727 1.803366 GAGGCCATCCCGTACCGTAG 61.803 65.000 5.01 0.00 39.21 3.51
5253 6728 1.829533 GAGGCCATCCCGTACCGTA 60.830 63.158 5.01 0.00 39.21 4.02
5254 6729 3.152400 GAGGCCATCCCGTACCGT 61.152 66.667 5.01 0.00 39.21 4.83
5255 6730 3.151710 TGAGGCCATCCCGTACCG 61.152 66.667 5.01 0.00 39.21 4.02
5256 6731 1.906105 TTGTGAGGCCATCCCGTACC 61.906 60.000 5.01 0.00 39.21 3.34
5257 6732 0.035820 TTTGTGAGGCCATCCCGTAC 60.036 55.000 5.01 0.00 39.21 3.67
5373 6848 0.523519 GGAGCTTACTTTGGCAGTGC 59.476 55.000 6.55 6.55 35.97 4.40
5414 6889 1.258445 GCAACTCGAGGAGGGGAAGA 61.258 60.000 18.41 0.00 33.35 2.87
5439 6925 1.202203 CCTTCAAACGACGACACGAA 58.798 50.000 0.00 0.00 37.03 3.85
5457 6943 4.421948 CGGCATATCTTCCGTTATACTCC 58.578 47.826 0.00 0.00 40.72 3.85
5458 6944 4.421948 CCGGCATATCTTCCGTTATACTC 58.578 47.826 0.00 0.00 43.87 2.59
5459 6945 3.368116 GCCGGCATATCTTCCGTTATACT 60.368 47.826 24.80 0.00 43.87 2.12
5460 6946 2.928116 GCCGGCATATCTTCCGTTATAC 59.072 50.000 24.80 0.00 43.87 1.47
5489 7002 4.959757 GTGCACTAAACTCGTTACAACAAC 59.040 41.667 10.32 0.00 0.00 3.32
5577 7090 6.318144 ACTTGTCAAGATGAATTCATGCCTAG 59.682 38.462 25.37 11.23 36.57 3.02
5587 7100 3.760684 GCTGGGAACTTGTCAAGATGAAT 59.239 43.478 19.53 0.10 0.00 2.57
5590 7103 2.787994 AGCTGGGAACTTGTCAAGATG 58.212 47.619 19.53 0.00 0.00 2.90
5634 7155 3.735237 TTTCGCCAACAATTTTAGCCA 57.265 38.095 0.00 0.00 0.00 4.75
5635 7156 4.241681 TCATTTCGCCAACAATTTTAGCC 58.758 39.130 0.00 0.00 0.00 3.93
5638 7159 9.868277 AATTATCTCATTTCGCCAACAATTTTA 57.132 25.926 0.00 0.00 0.00 1.52
5689 7210 1.737838 ACATACACATCCGGTTGCAG 58.262 50.000 12.54 8.07 0.00 4.41
5690 7211 2.623535 GTACATACACATCCGGTTGCA 58.376 47.619 12.54 0.00 0.00 4.08
5778 7299 2.093447 AGCGGTTCCTATCTTGTGGAAG 60.093 50.000 0.00 0.00 42.27 3.46
5810 7331 0.829333 GAGCTCATTCTGAGGCCTCA 59.171 55.000 33.04 33.04 44.43 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.