AutoCloner

Multiple sequence alignment - TraesCS4D01G193800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G193800	chr4D	100.000	3292	0	0	1	3292	337045289	337041998	0.000000e+00	6080.0
1	TraesCS4D01G193800	chr4D	89.437	142	9	4	151	292	337050808	337050673	1.210000e-39	174.0
2	TraesCS4D01G193800	chr4A	90.881	2588	114	40	753	3278	136275441	136277968	0.000000e+00	3360.0
3	TraesCS4D01G193800	chr4A	91.694	602	31	6	1	590	136274652	136275246	0.000000e+00	817.0
4	TraesCS4D01G193800	chr4A	88.333	60	2	3	699	758	136275353	136275407	2.120000e-07	67.6
5	TraesCS4D01G193800	chr4B	93.247	2251	88	18	753	2964	415765547	415763322	0.000000e+00	3256.0
6	TraesCS4D01G193800	chr4B	90.718	905	58	15	2077	2964	415713255	415712360	0.000000e+00	1182.0
7	TraesCS4D01G193800	chr4B	90.652	706	32	12	1	704	415767348	415766675	0.000000e+00	907.0
8	TraesCS4D01G193800	chr4B	89.577	307	21	6	2986	3292	415763268	415762973	2.400000e-101	379.0
9	TraesCS4D01G193800	chr4B	89.251	307	22	6	2986	3292	415712306	415712011	1.120000e-99	374.0
10	TraesCS4D01G193800	chr4B	80.056	356	41	18	23	366	416105912	416105575	1.530000e-58	237.0
11	TraesCS4D01G193800	chr6B	92.806	278	11	1	1367	1635	1947104	1946827	8.560000e-106	394.0
12	TraesCS4D01G193800	chr3B	92.806	278	11	1	1367	1635	26533794	26533517	8.560000e-106	394.0
13	TraesCS4D01G193800	chr3B	92.339	248	13	3	1258	1499	783881622	783881375	6.760000e-92	348.0
14	TraesCS4D01G193800	chr3B	86.232	138	18	1	3155	3291	445118575	445118712	7.360000e-32	148.0
15	TraesCS4D01G193800	chr3B	83.594	128	18	3	3140	3267	13771021	13771145	2.080000e-22	117.0
16	TraesCS4D01G193800	chr3B	91.111	45	4	0	3248	3292	572791487	572791531	9.860000e-06	62.1
17	TraesCS4D01G193800	chr2A	93.548	248	10	3	1258	1499	378848036	378847789	6.710000e-97	364.0
18	TraesCS4D01G193800	chr7B	92.742	248	12	3	1258	1499	411414024	411414271	1.450000e-93	353.0
19	TraesCS4D01G193800	chr2B	92.713	247	12	3	1263	1503	598556346	598556100	5.230000e-93	351.0
20	TraesCS4D01G193800	chr2D	92.063	252	14	3	1258	1503	596991386	596991135	1.880000e-92	350.0
21	TraesCS4D01G193800	chr2D	81.752	137	25	0	3156	3292	634074714	634074578	7.460000e-22	115.0
22	TraesCS4D01G193800	chr3A	92.308	247	13	4	1263	1503	736252284	736252038	2.430000e-91	346.0
23	TraesCS4D01G193800	chr3A	87.719	114	11	3	3140	3253	547128726	547128616	2.670000e-26	130.0
24	TraesCS4D01G193800	chr5B	89.474	152	15	1	3141	3292	88332376	88332226	1.210000e-44	191.0
25	TraesCS4D01G193800	chr6D	86.184	152	20	1	3141	3292	29981596	29981746	2.630000e-36	163.0
26	TraesCS4D01G193800	chr1B	85.401	137	20	0	3156	3292	656424872	656424736	3.420000e-30	143.0
27	TraesCS4D01G193800	chr1B	81.699	153	26	2	3140	3292	625278221	625278371	3.450000e-25	126.0
28	TraesCS4D01G193800	chr7A	83.871	124	20	0	3156	3279	477027852	477027975	5.770000e-23	119.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G193800	chr4D	337041998	337045289	3291	True	6080.000000	6080	100.000000	1	3292	1	chr4D.!!$R1	3291
1	TraesCS4D01G193800	chr4A	136274652	136277968	3316	False	1414.866667	3360	90.302667	1	3278	3	chr4A.!!$F1	3277
2	TraesCS4D01G193800	chr4B	415762973	415767348	4375	True	1514.000000	3256	91.158667	1	3292	3	chr4B.!!$R3	3291
3	TraesCS4D01G193800	chr4B	415712011	415713255	1244	True	778.000000	1182	89.984500	2077	3292	2	chr4B.!!$R2	1215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
208	215	0.177604	GTGGAGATGGAGAGGCACAG	59.822	60.000	0.00	0.0	0.0	3.66	F
324	331	0.533308	ACAAGTCCGCGGCAACTAAA	60.533	50.000	23.51	0.0	0.0	1.85	F
375	387	1.051812	ATTCCCAGTCCTATCAGCGG	58.948	55.000	0.00	0.0	0.0	5.52	F
1755	2914	1.202582	GATACACACACCTCAGTCGCT	59.797	52.381	0.00	0.0	0.0	4.93	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1692	2851	2.498056	GGTGGCTGGGGTTTGTGTG	61.498	63.158	0.00	0.00	0.00	3.82	R
2220	3410	0.247736	AGGCGTGATCCTGAACAGAC	59.752	55.000	3.19	0.00	34.56	3.51	R
2250	3442	4.142622	TGTCAAAAAGCACAAGACAGACAG	60.143	41.667	0.00	0.00	34.59	3.51	R
3235	4473	0.108662	TCGTAGTCGTCGCTAGGTGA	60.109	55.000	12.67	4.11	38.33	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	92	1.775385	CTCAAGGAGGAGGAGGAGAC	58.225	60.000	0.00	0.00	0.00	3.36
93	94	1.040339	CAAGGAGGAGGAGGAGACCG	61.040	65.000	0.00	0.00	34.73	4.79
94	95	1.511316	AAGGAGGAGGAGGAGACCGT	61.511	60.000	0.00	0.00	34.73	4.83
95	96	1.755008	GGAGGAGGAGGAGACCGTG	60.755	68.421	0.00	0.00	34.73	4.94
96	97	1.303615	GAGGAGGAGGAGACCGTGA	59.696	63.158	0.00	0.00	34.73	4.35
97	98	0.323542	GAGGAGGAGGAGACCGTGAA	60.324	60.000	0.00	0.00	34.73	3.18
98	99	0.323908	AGGAGGAGGAGACCGTGAAG	60.324	60.000	0.00	0.00	34.73	3.02
208	215	0.177604	GTGGAGATGGAGAGGCACAG	59.822	60.000	0.00	0.00	0.00	3.66
214	221	0.617413	ATGGAGAGGCACAGGTTCAG	59.383	55.000	0.00	0.00	0.00	3.02
324	331	0.533308	ACAAGTCCGCGGCAACTAAA	60.533	50.000	23.51	0.00	0.00	1.85
375	387	1.051812	ATTCCCAGTCCTATCAGCGG	58.948	55.000	0.00	0.00	0.00	5.52
438	450	1.238439	ATTTTGTGTGCAGAGGGACG	58.762	50.000	0.00	0.00	38.35	4.79
484	496	2.416547	CGTGTAGGCTGAAAATCCAGTG	59.583	50.000	0.00	0.00	36.57	3.66
487	499	2.978156	AGGCTGAAAATCCAGTGGAA	57.022	45.000	17.71	0.00	34.34	3.53
491	503	4.228210	AGGCTGAAAATCCAGTGGAATAGA	59.772	41.667	17.71	0.00	34.34	1.98
492	504	4.578105	GGCTGAAAATCCAGTGGAATAGAG	59.422	45.833	17.71	9.76	34.34	2.43
493	505	5.431765	GCTGAAAATCCAGTGGAATAGAGA	58.568	41.667	17.71	0.00	34.34	3.10
535	548	7.870954	TCACTGTATCTTGTTTTACACCTAGTG	59.129	37.037	0.00	0.00	39.75	2.74
538	551	8.373048	TGTATCTTGTTTTACACCTAGTGTTG	57.627	34.615	5.59	0.00	45.08	3.33
590	603	5.529060	ACTTACCATGTACCGTAGCTAGTAC	59.471	44.000	13.70	13.70	39.44	2.73
604	619	8.229137	CCGTAGCTAGTACTAGTAATTAGCAAG	58.771	40.741	30.25	23.71	35.65	4.01
624	639	5.684704	CAAGCAAGAATCACCCCTAGATTA	58.315	41.667	0.00	0.00	35.93	1.75
631	646	8.597167	CAAGAATCACCCCTAGATTACATATCA	58.403	37.037	0.00	0.00	35.93	2.15
632	647	8.742125	AGAATCACCCCTAGATTACATATCAA	57.258	34.615	0.00	0.00	35.93	2.57
633	648	9.343994	AGAATCACCCCTAGATTACATATCAAT	57.656	33.333	0.00	0.00	35.93	2.57
634	649	9.388506	GAATCACCCCTAGATTACATATCAATG	57.611	37.037	0.00	0.00	35.93	2.82
758	1835	3.381590	AGACCTCTTGTTTGAAACCAAGC	59.618	43.478	5.50	0.00	0.00	4.01
760	1837	2.695147	CCTCTTGTTTGAAACCAAGCCT	59.305	45.455	5.50	0.00	0.00	4.58
1692	2851	1.433879	CATCTCCACCTCGGACGAC	59.566	63.158	0.00	0.00	39.64	4.34
1755	2914	1.202582	GATACACACACCTCAGTCGCT	59.797	52.381	0.00	0.00	0.00	4.93
1814	2973	3.982316	TTGCCTGAGCCCATCTGCG	62.982	63.158	0.00	0.00	38.69	5.18
1815	2974	4.479993	GCCTGAGCCCATCTGCGT	62.480	66.667	0.00	0.00	36.02	5.24
1819	2978	1.344438	CCTGAGCCCATCTGCGTATTA	59.656	52.381	0.00	0.00	36.02	0.98
1868	3027	3.724508	TTGAATTTGGACGCAACATGT	57.275	38.095	0.00	0.00	0.00	3.21
1894	3059	3.950869	TCTGCAATTGCTGAGAGCT	57.049	47.368	29.51	0.00	42.97	4.09
1917	3082	4.072839	CCAGCTTATGCATCATCATGAGT	58.927	43.478	0.19	0.00	42.74	3.41
2093	3261	3.935203	TGCTTTCTGCTTATGCTCTGTAC	59.065	43.478	1.96	0.00	43.37	2.90
2142	3310	6.183360	CCAACTGCAAGATTTTAGAGAGATGG	60.183	42.308	0.00	0.00	37.43	3.51
2220	3410	6.148948	TGTTGCTTTGAACAATTAGGAATCG	58.851	36.000	0.00	0.00	32.84	3.34
2250	3442	2.468831	GATCACGCCTCTCTGACATTC	58.531	52.381	0.00	0.00	0.00	2.67
2499	3691	4.135153	CGGTGCAGGACGAGGGAG	62.135	72.222	0.00	0.00	0.00	4.30
2500	3692	3.775654	GGTGCAGGACGAGGGAGG	61.776	72.222	0.00	0.00	0.00	4.30
2501	3693	3.775654	GTGCAGGACGAGGGAGGG	61.776	72.222	0.00	0.00	0.00	4.30
2585	3777	4.825634	GGTAATTTACTGCTGTAATCCCCC	59.174	45.833	15.83	10.63	38.31	5.40
2678	3872	1.271102	ACGAGTTCCAGAAGACTGCTC	59.729	52.381	0.00	0.00	42.25	4.26
2721	3915	0.240145	CTGCTGGTGTGTGCAATCTG	59.760	55.000	0.00	0.00	38.81	2.90
2722	3916	1.080974	GCTGGTGTGTGCAATCTGC	60.081	57.895	0.00	0.00	45.29	4.26
2766	3960	0.740868	TCCTCGCACATTGCTGTAGC	60.741	55.000	0.00	0.00	42.25	3.58
2891	4093	7.118101	GCCAATAATTTGAATGTTTCAGAAGCA	59.882	33.333	1.71	1.71	41.38	3.91
2894	4096	5.796424	ATTTGAATGTTTCAGAAGCACCT	57.204	34.783	1.18	0.00	41.38	4.00
2907	4109	2.877043	AGCACCTGCACTTTTTCTTG	57.123	45.000	0.00	0.00	45.16	3.02
2947	4150	3.411446	CACTTTGTTACTGAGCCATCCA	58.589	45.455	0.00	0.00	0.00	3.41
2948	4151	3.189287	CACTTTGTTACTGAGCCATCCAC	59.811	47.826	0.00	0.00	0.00	4.02
2959	4162	2.264480	CATCCACCGCCGACTTGA	59.736	61.111	0.00	0.00	0.00	3.02
2964	4167	1.569493	CACCGCCGACTTGACTTTG	59.431	57.895	0.00	0.00	0.00	2.77
2965	4168	2.251642	ACCGCCGACTTGACTTTGC	61.252	57.895	0.00	0.00	0.00	3.68
2966	4169	2.170985	CGCCGACTTGACTTTGCG	59.829	61.111	0.00	0.00	35.81	4.85
2967	4170	2.556287	GCCGACTTGACTTTGCGG	59.444	61.111	0.00	0.00	44.47	5.69
2968	4171	2.966309	GCCGACTTGACTTTGCGGG	61.966	63.158	0.00	0.00	42.09	6.13
2969	4172	2.325082	CCGACTTGACTTTGCGGGG	61.325	63.158	0.00	0.00	38.40	5.73
2971	4174	0.320073	CGACTTGACTTTGCGGGGTA	60.320	55.000	0.00	0.00	0.00	3.69
2972	4175	1.439679	GACTTGACTTTGCGGGGTAG	58.560	55.000	0.00	0.00	0.00	3.18
2973	4176	1.001633	GACTTGACTTTGCGGGGTAGA	59.998	52.381	0.00	0.00	0.00	2.59
2974	4177	1.418637	ACTTGACTTTGCGGGGTAGAA	59.581	47.619	0.00	0.00	0.00	2.10
2975	4178	2.076863	CTTGACTTTGCGGGGTAGAAG	58.923	52.381	0.00	0.00	0.00	2.85
2976	4179	0.321298	TGACTTTGCGGGGTAGAAGC	60.321	55.000	0.00	0.00	0.00	3.86
2978	4181	0.605589	ACTTTGCGGGGTAGAAGCAC	60.606	55.000	0.00	0.00	40.92	4.40
2979	4182	1.302993	TTTGCGGGGTAGAAGCACC	60.303	57.895	0.00	0.00	40.92	5.01
2981	4184	4.832608	GCGGGGTAGAAGCACCGG	62.833	72.222	8.87	0.00	46.04	5.28
2982	4185	4.832608	CGGGGTAGAAGCACCGGC	62.833	72.222	0.00	0.00	42.48	6.13
2983	4186	3.712907	GGGGTAGAAGCACCGGCA	61.713	66.667	0.00	0.00	44.61	5.69
2984	4187	2.436115	GGGTAGAAGCACCGGCAC	60.436	66.667	0.00	0.00	44.61	5.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	1.687996	GGTCTCCTCCTCCTCCTTGAG	60.688	61.905	0.00	0.00	0.00	3.02
88	89	4.379243	CGCAGCCCTTCACGGTCT	62.379	66.667	0.00	0.00	0.00	3.85
93	94	4.643387	ACACCCGCAGCCCTTCAC	62.643	66.667	0.00	0.00	0.00	3.18
94	95	4.641645	CACACCCGCAGCCCTTCA	62.642	66.667	0.00	0.00	0.00	3.02
95	96	4.329545	TCACACCCGCAGCCCTTC	62.330	66.667	0.00	0.00	0.00	3.46
96	97	4.335647	CTCACACCCGCAGCCCTT	62.336	66.667	0.00	0.00	0.00	3.95
98	99	4.643387	AACTCACACCCGCAGCCC	62.643	66.667	0.00	0.00	0.00	5.19
208	215	1.556911	TGAGCATCTCCTTCCTGAACC	59.443	52.381	0.00	0.00	34.92	3.62
214	221	3.834489	TCATCTTGAGCATCTCCTTCC	57.166	47.619	0.00	0.00	34.92	3.46
313	320	2.939460	ACCATGATTTTAGTTGCCGC	57.061	45.000	0.00	0.00	0.00	6.53
324	331	9.449719	AGAGATCGTTTAGTTTTTACCATGATT	57.550	29.630	0.00	0.00	0.00	2.57
343	355	3.169099	ACTGGGAATGGGATAGAGATCG	58.831	50.000	0.00	0.00	32.28	3.69
375	387	8.634475	AAGAAGAAGAAAACAAACTGTATTGC	57.366	30.769	3.66	0.00	33.52	3.56
438	450	1.380380	CCTGCAGACCAAATCCCCC	60.380	63.158	17.39	0.00	0.00	5.40
466	478	3.350219	TCCACTGGATTTTCAGCCTAC	57.650	47.619	0.00	0.00	38.26	3.18
484	496	6.166982	AGCACAAACACTACTTCTCTATTCC	58.833	40.000	0.00	0.00	0.00	3.01
487	499	6.647067	GTGAAGCACAAACACTACTTCTCTAT	59.353	38.462	0.00	0.00	38.04	1.98
491	503	4.572389	CAGTGAAGCACAAACACTACTTCT	59.428	41.667	0.00	0.00	41.93	2.85
492	504	4.332819	ACAGTGAAGCACAAACACTACTTC	59.667	41.667	0.00	0.00	41.93	3.01
493	505	4.261801	ACAGTGAAGCACAAACACTACTT	58.738	39.130	0.00	0.00	41.93	2.24
535	548	4.867608	ACAACCACAAATGCAGTAAACAAC	59.132	37.500	0.00	0.00	0.00	3.32
538	551	5.827666	AGTACAACCACAAATGCAGTAAAC	58.172	37.500	0.00	0.00	0.00	2.01
590	603	7.254932	GGGTGATTCTTGCTTGCTAATTACTAG	60.255	40.741	0.00	0.00	0.00	2.57
604	619	5.036117	TGTAATCTAGGGGTGATTCTTGC	57.964	43.478	0.00	0.00	35.90	4.01
670	691	1.965083	ACTCGATCGAGACACAAACG	58.035	50.000	42.97	20.50	44.53	3.60
736	1807	3.381590	GCTTGGTTTCAAACAAGAGGTCT	59.618	43.478	19.48	0.00	45.22	3.85
1692	2851	2.498056	GGTGGCTGGGGTTTGTGTG	61.498	63.158	0.00	0.00	0.00	3.82
1819	2978	8.362639	GCTAATCAACAATCATTAACCATGGAT	58.637	33.333	21.47	9.83	33.07	3.41
1894	3059	4.202430	ACTCATGATGATGCATAAGCTGGA	60.202	41.667	0.00	0.00	42.74	3.86
2014	3182	9.929180	TTAGAAATAATAGCATCGCATCTTAGT	57.071	29.630	0.00	0.00	0.00	2.24
2142	3310	5.941948	ACTTGTTAACAGTATTCAGTGCC	57.058	39.130	8.56	0.00	0.00	5.01
2220	3410	0.247736	AGGCGTGATCCTGAACAGAC	59.752	55.000	3.19	0.00	34.56	3.51
2250	3442	4.142622	TGTCAAAAAGCACAAGACAGACAG	60.143	41.667	0.00	0.00	34.59	3.51
2498	3690	1.134280	CATTCAGGCAATCGAGTCCCT	60.134	52.381	0.00	0.00	0.00	4.20
2499	3691	1.303309	CATTCAGGCAATCGAGTCCC	58.697	55.000	0.00	0.00	0.00	4.46
2500	3692	0.659957	GCATTCAGGCAATCGAGTCC	59.340	55.000	0.00	0.00	0.00	3.85
2501	3693	1.372582	TGCATTCAGGCAATCGAGTC	58.627	50.000	0.00	0.00	41.65	3.36
2585	3777	1.261619	GTTCGTCAGCTGGAAACACAG	59.738	52.381	15.13	1.42	41.41	3.66
2647	3839	7.280652	GTCTTCTGGAACTCGTAGAAGTAGTAT	59.719	40.741	15.89	0.00	44.75	2.12
2650	3842	5.644636	AGTCTTCTGGAACTCGTAGAAGTAG	59.355	44.000	15.89	0.00	44.75	2.57
2659	3853	1.543802	AGAGCAGTCTTCTGGAACTCG	59.456	52.381	0.00	0.00	41.57	4.18
2678	3872	5.853282	GCAAGCAAACACATAACAGAAGTAG	59.147	40.000	0.00	0.00	0.00	2.57
2722	3916	3.952675	ACACGCACAAAGCCGCAG	61.953	61.111	0.00	0.00	41.38	5.18
2766	3960	9.806203	TTGCCTGACAAAGATTTATCAATTATG	57.194	29.630	0.00	0.00	34.56	1.90
2891	4093	0.385390	CGCCAAGAAAAAGTGCAGGT	59.615	50.000	0.00	0.00	0.00	4.00
2894	4096	1.739049	CCCGCCAAGAAAAAGTGCA	59.261	52.632	0.00	0.00	0.00	4.57
2907	4109	2.501610	CAGAGCTTCTACCCCGCC	59.498	66.667	0.00	0.00	0.00	6.13
2947	4150	2.251642	GCAAAGTCAAGTCGGCGGT	61.252	57.895	7.21	0.00	0.00	5.68
2948	4151	2.556287	GCAAAGTCAAGTCGGCGG	59.444	61.111	7.21	0.00	0.00	6.13
2959	4162	0.605589	GTGCTTCTACCCCGCAAAGT	60.606	55.000	0.00	0.00	35.16	2.66
2964	4167	4.832608	CCGGTGCTTCTACCCCGC	62.833	72.222	0.00	0.00	39.12	6.13
2965	4168	4.832608	GCCGGTGCTTCTACCCCG	62.833	72.222	1.90	0.00	37.44	5.73
2966	4169	3.712907	TGCCGGTGCTTCTACCCC	61.713	66.667	1.90	0.00	37.44	4.95
2967	4170	2.436115	GTGCCGGTGCTTCTACCC	60.436	66.667	1.90	0.00	37.44	3.69
2968	4171	0.605589	AAAGTGCCGGTGCTTCTACC	60.606	55.000	1.90	0.00	38.71	3.18
2969	4172	0.517316	CAAAGTGCCGGTGCTTCTAC	59.483	55.000	1.90	0.00	38.71	2.59
2971	4174	2.555547	GCAAAGTGCCGGTGCTTCT	61.556	57.895	1.90	0.00	37.42	2.85
2972	4175	2.050077	GCAAAGTGCCGGTGCTTC	60.050	61.111	1.90	0.00	37.42	3.86
2981	4184	2.917172	CCACCAAATGGCAAAGTGC	58.083	52.632	0.00	0.00	43.24	4.40
3225	4463	2.229302	GTCGCTAGGTGATCTATGGGTC	59.771	54.545	0.00	0.00	0.00	4.46
3227	4465	1.200252	CGTCGCTAGGTGATCTATGGG	59.800	57.143	0.00	0.00	0.00	4.00
3230	4468	3.128852	AGTCGTCGCTAGGTGATCTAT	57.871	47.619	0.00	0.00	0.00	1.98
3235	4473	0.108662	TCGTAGTCGTCGCTAGGTGA	60.109	55.000	12.67	4.11	38.33	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.