Multiple sequence alignment - TraesCS4D01G193200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G193200 chr4D 100.000 4535 0 0 1 4535 336531673 336536207 0.000000e+00 8375
1 TraesCS4D01G193200 chr4D 87.786 262 26 5 1 257 75772918 75772658 7.370000e-78 302
2 TraesCS4D01G193200 chr4B 95.889 2384 71 12 1586 3957 414793599 414795967 0.000000e+00 3834
3 TraesCS4D01G193200 chr4B 91.708 1206 61 19 264 1438 414792257 414793454 0.000000e+00 1637
4 TraesCS4D01G193200 chr4B 87.667 300 12 9 3957 4240 414796006 414796296 4.380000e-85 326
5 TraesCS4D01G193200 chr4B 87.405 262 27 5 1 257 516868097 516868357 3.430000e-76 296
6 TraesCS4D01G193200 chr4B 86.222 225 28 3 4307 4530 424285222 424285444 1.630000e-59 241
7 TraesCS4D01G193200 chr4B 85.153 229 31 3 4304 4531 16082506 16082280 9.810000e-57 231
8 TraesCS4D01G193200 chr4A 91.750 2715 116 47 1590 4229 136801407 136798726 0.000000e+00 3674
9 TraesCS4D01G193200 chr4A 88.980 1216 50 25 263 1432 136802742 136801565 0.000000e+00 1426
10 TraesCS4D01G193200 chr1A 90.588 255 21 3 1 253 561698152 561697899 7.270000e-88 335
11 TraesCS4D01G193200 chr5D 89.655 261 22 4 1 257 344690414 344690155 1.220000e-85 327
12 TraesCS4D01G193200 chr5D 89.683 252 23 3 1 250 217061264 217061514 7.320000e-83 318
13 TraesCS4D01G193200 chr5D 88.760 258 24 5 2 257 35278503 35278249 1.230000e-80 311
14 TraesCS4D01G193200 chr2D 89.062 256 25 3 1 254 77412635 77412889 9.470000e-82 315
15 TraesCS4D01G193200 chr7A 87.938 257 25 4 3 257 90391445 90391193 9.540000e-77 298
16 TraesCS4D01G193200 chr7B 87.597 258 26 5 1 253 240025024 240024768 1.230000e-75 294
17 TraesCS4D01G193200 chr2B 87.156 218 26 2 4314 4530 766171365 766171149 3.500000e-61 246
18 TraesCS4D01G193200 chr5B 86.697 218 27 2 4314 4530 445179611 445179395 1.630000e-59 241
19 TraesCS4D01G193200 chr5B 85.217 230 31 3 4302 4530 276825630 276825403 2.730000e-57 233
20 TraesCS4D01G193200 chr3D 86.758 219 25 4 4314 4531 553334250 553334035 1.630000e-59 241
21 TraesCS4D01G193200 chr3B 85.903 227 28 3 4305 4530 62389261 62389484 5.860000e-59 239
22 TraesCS4D01G193200 chr3B 85.778 225 30 2 4307 4530 825271085 825271308 2.110000e-58 237
23 TraesCS4D01G193200 chr6B 85.408 233 29 5 4300 4530 260601316 260601087 2.110000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G193200 chr4D 336531673 336536207 4534 False 8375.000000 8375 100.000000 1 4535 1 chr4D.!!$F1 4534
1 TraesCS4D01G193200 chr4B 414792257 414796296 4039 False 1932.333333 3834 91.754667 264 4240 3 chr4B.!!$F3 3976
2 TraesCS4D01G193200 chr4A 136798726 136802742 4016 True 2550.000000 3674 90.365000 263 4229 2 chr4A.!!$R1 3966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.039256 TGCCGACTCAAATGCAAAGC 60.039 50.0 0.0 0.00 0.0 3.51 F
184 185 0.242017 GCCGACTCAAATGCAAAGCT 59.758 50.0 0.0 0.00 0.0 3.74 F
188 189 0.319405 ACTCAAATGCAAAGCTGGGC 59.681 50.0 0.0 3.03 0.0 5.36 F
2149 2250 0.546747 TTCCCACTCCCCTACCACAG 60.547 60.0 0.0 0.00 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1538 2.031157 GCTTGATGGCAAACACTAACGT 60.031 45.455 0.00 0.00 32.73 3.99 R
1693 1794 2.172372 GCTCAGTGCAGGCTGATCG 61.172 63.158 20.86 2.85 43.61 3.69 R
2164 2265 2.497675 GGTCTGCCACTCATCTACTGAA 59.502 50.000 0.00 0.00 31.52 3.02 R
3864 4031 1.597663 ACTGTGCAGTTAGTTCGTTGC 59.402 47.619 0.00 0.00 38.83 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.698029 GCATGAACTGCGGTGATATTT 57.302 42.857 0.00 0.00 41.97 1.40
33 34 4.032703 GCATGAACTGCGGTGATATTTT 57.967 40.909 0.00 0.00 41.97 1.82
34 35 3.792956 GCATGAACTGCGGTGATATTTTG 59.207 43.478 0.00 0.00 41.97 2.44
35 36 4.353737 CATGAACTGCGGTGATATTTTGG 58.646 43.478 0.00 0.00 0.00 3.28
36 37 3.680490 TGAACTGCGGTGATATTTTGGA 58.320 40.909 0.00 0.00 0.00 3.53
37 38 4.075682 TGAACTGCGGTGATATTTTGGAA 58.924 39.130 0.00 0.00 0.00 3.53
38 39 4.155826 TGAACTGCGGTGATATTTTGGAAG 59.844 41.667 0.00 0.00 0.00 3.46
39 40 2.423538 ACTGCGGTGATATTTTGGAAGC 59.576 45.455 0.00 0.00 0.00 3.86
40 41 1.748493 TGCGGTGATATTTTGGAAGCC 59.252 47.619 0.00 0.00 0.00 4.35
41 42 1.268539 GCGGTGATATTTTGGAAGCCG 60.269 52.381 0.00 0.00 40.72 5.52
42 43 1.333619 CGGTGATATTTTGGAAGCCGG 59.666 52.381 0.00 0.00 34.97 6.13
43 44 1.067060 GGTGATATTTTGGAAGCCGGC 59.933 52.381 21.89 21.89 0.00 6.13
44 45 1.748493 GTGATATTTTGGAAGCCGGCA 59.252 47.619 31.54 5.89 0.00 5.69
45 46 2.165437 GTGATATTTTGGAAGCCGGCAA 59.835 45.455 31.54 13.75 0.00 4.52
46 47 3.030291 TGATATTTTGGAAGCCGGCAAT 58.970 40.909 31.54 20.16 0.00 3.56
47 48 2.957491 TATTTTGGAAGCCGGCAATG 57.043 45.000 31.54 0.00 0.00 2.82
48 49 0.975887 ATTTTGGAAGCCGGCAATGT 59.024 45.000 31.54 10.83 0.00 2.71
49 50 1.621992 TTTTGGAAGCCGGCAATGTA 58.378 45.000 31.54 7.95 0.00 2.29
50 51 1.846007 TTTGGAAGCCGGCAATGTAT 58.154 45.000 31.54 2.66 0.00 2.29
51 52 1.102154 TTGGAAGCCGGCAATGTATG 58.898 50.000 31.54 0.00 0.00 2.39
60 61 2.328989 CAATGTATGCCGGCGCTG 59.671 61.111 23.90 9.96 35.36 5.18
61 62 2.901840 AATGTATGCCGGCGCTGG 60.902 61.111 31.57 31.57 35.36 4.85
75 76 2.438975 CTGGCATGGTGTCGGCAT 60.439 61.111 0.00 0.00 37.05 4.40
76 77 2.751036 TGGCATGGTGTCGGCATG 60.751 61.111 0.00 0.00 32.00 4.06
77 78 2.438254 GGCATGGTGTCGGCATGA 60.438 61.111 0.00 0.00 0.00 3.07
78 79 1.825191 GGCATGGTGTCGGCATGAT 60.825 57.895 0.00 0.00 0.00 2.45
79 80 1.650912 GCATGGTGTCGGCATGATC 59.349 57.895 0.00 0.00 0.00 2.92
80 81 0.816825 GCATGGTGTCGGCATGATCT 60.817 55.000 0.00 0.00 0.00 2.75
81 82 1.541015 GCATGGTGTCGGCATGATCTA 60.541 52.381 0.00 0.00 0.00 1.98
82 83 2.873245 GCATGGTGTCGGCATGATCTAT 60.873 50.000 0.00 0.00 0.00 1.98
83 84 2.531522 TGGTGTCGGCATGATCTATG 57.468 50.000 0.00 0.00 39.88 2.23
84 85 1.070601 TGGTGTCGGCATGATCTATGG 59.929 52.381 0.00 0.00 37.26 2.74
89 90 4.709840 GCATGATCTATGGCCGCT 57.290 55.556 0.00 0.00 37.26 5.52
90 91 2.168947 GCATGATCTATGGCCGCTG 58.831 57.895 0.00 0.00 37.26 5.18
91 92 1.303799 GCATGATCTATGGCCGCTGG 61.304 60.000 0.00 0.00 37.26 4.85
102 103 3.417601 CCGCTGGCATGATCTGTG 58.582 61.111 0.00 0.00 0.00 3.66
103 104 2.184830 CCGCTGGCATGATCTGTGG 61.185 63.158 0.00 4.31 0.00 4.17
104 105 2.831366 CGCTGGCATGATCTGTGGC 61.831 63.158 15.11 15.11 41.99 5.01
105 106 2.487532 GCTGGCATGATCTGTGGCC 61.488 63.158 17.87 13.88 46.58 5.36
107 108 3.589881 GGCATGATCTGTGGCCGC 61.590 66.667 10.11 10.11 36.58 6.53
108 109 3.945434 GCATGATCTGTGGCCGCG 61.945 66.667 12.58 0.00 0.00 6.46
109 110 3.274586 CATGATCTGTGGCCGCGG 61.275 66.667 24.05 24.05 0.00 6.46
110 111 4.552365 ATGATCTGTGGCCGCGGG 62.552 66.667 29.38 13.59 0.00 6.13
120 121 2.574399 GCCGCGGGCCATTTTTAA 59.426 55.556 29.38 0.00 44.06 1.52
121 122 1.079750 GCCGCGGGCCATTTTTAAA 60.080 52.632 29.38 0.00 44.06 1.52
122 123 0.670854 GCCGCGGGCCATTTTTAAAA 60.671 50.000 29.38 0.00 44.06 1.52
123 124 1.797025 CCGCGGGCCATTTTTAAAAA 58.203 45.000 20.10 15.38 0.00 1.94
124 125 2.351455 CCGCGGGCCATTTTTAAAAAT 58.649 42.857 20.10 18.40 39.07 1.82
125 126 2.744741 CCGCGGGCCATTTTTAAAAATT 59.255 40.909 20.10 6.61 36.52 1.82
126 127 3.425492 CCGCGGGCCATTTTTAAAAATTG 60.425 43.478 20.10 18.58 36.52 2.32
127 128 3.433615 CGCGGGCCATTTTTAAAAATTGA 59.566 39.130 22.40 1.37 36.52 2.57
128 129 4.435386 CGCGGGCCATTTTTAAAAATTGAG 60.435 41.667 22.40 15.61 36.52 3.02
129 130 4.454161 GCGGGCCATTTTTAAAAATTGAGT 59.546 37.500 22.40 3.93 36.52 3.41
130 131 5.616645 GCGGGCCATTTTTAAAAATTGAGTG 60.617 40.000 22.40 13.88 36.52 3.51
131 132 5.616645 CGGGCCATTTTTAAAAATTGAGTGC 60.617 40.000 22.40 17.95 36.52 4.40
132 133 5.381477 GGCCATTTTTAAAAATTGAGTGCG 58.619 37.500 22.40 11.49 36.52 5.34
133 134 5.381477 GCCATTTTTAAAAATTGAGTGCGG 58.619 37.500 22.40 18.46 36.52 5.69
134 135 5.178438 GCCATTTTTAAAAATTGAGTGCGGA 59.822 36.000 22.40 0.00 36.52 5.54
135 136 6.589454 CCATTTTTAAAAATTGAGTGCGGAC 58.411 36.000 20.92 0.00 36.52 4.79
136 137 6.201806 CCATTTTTAAAAATTGAGTGCGGACA 59.798 34.615 20.92 0.00 36.52 4.02
137 138 7.095271 CCATTTTTAAAAATTGAGTGCGGACAT 60.095 33.333 20.92 0.00 36.52 3.06
138 139 6.761731 TTTTAAAAATTGAGTGCGGACATG 57.238 33.333 10.52 0.00 0.00 3.21
139 140 5.697473 TTAAAAATTGAGTGCGGACATGA 57.303 34.783 10.52 0.00 0.00 3.07
140 141 4.582701 AAAAATTGAGTGCGGACATGAA 57.417 36.364 10.52 0.00 0.00 2.57
141 142 4.582701 AAAATTGAGTGCGGACATGAAA 57.417 36.364 10.52 0.00 0.00 2.69
142 143 4.789012 AAATTGAGTGCGGACATGAAAT 57.211 36.364 10.52 0.34 0.00 2.17
143 144 5.895636 AAATTGAGTGCGGACATGAAATA 57.104 34.783 10.52 0.00 0.00 1.40
144 145 5.490139 AATTGAGTGCGGACATGAAATAG 57.510 39.130 10.52 0.00 0.00 1.73
145 146 2.905075 TGAGTGCGGACATGAAATAGG 58.095 47.619 10.52 0.00 0.00 2.57
146 147 2.236146 TGAGTGCGGACATGAAATAGGT 59.764 45.455 10.52 0.00 0.00 3.08
147 148 2.866762 GAGTGCGGACATGAAATAGGTC 59.133 50.000 10.52 0.00 39.31 3.85
148 149 1.593006 GTGCGGACATGAAATAGGTCG 59.407 52.381 0.63 0.00 40.89 4.79
149 150 1.217882 GCGGACATGAAATAGGTCGG 58.782 55.000 0.00 0.00 40.89 4.79
150 151 1.217882 CGGACATGAAATAGGTCGGC 58.782 55.000 0.00 0.00 40.89 5.54
151 152 1.217882 GGACATGAAATAGGTCGGCG 58.782 55.000 0.00 0.00 40.89 6.46
152 153 0.582005 GACATGAAATAGGTCGGCGC 59.418 55.000 0.00 0.00 29.60 6.53
153 154 1.151777 ACATGAAATAGGTCGGCGCG 61.152 55.000 0.00 0.00 0.00 6.86
154 155 1.143183 ATGAAATAGGTCGGCGCGT 59.857 52.632 8.43 1.54 0.00 6.01
155 156 0.461339 ATGAAATAGGTCGGCGCGTT 60.461 50.000 8.43 0.00 0.00 4.84
156 157 1.347221 GAAATAGGTCGGCGCGTTG 59.653 57.895 8.43 0.00 0.00 4.10
157 158 2.032185 GAAATAGGTCGGCGCGTTGG 62.032 60.000 8.43 0.00 0.00 3.77
158 159 4.524318 ATAGGTCGGCGCGTTGGG 62.524 66.667 8.43 0.00 0.00 4.12
175 176 3.345808 GCGCACTGCCGACTCAAA 61.346 61.111 0.30 0.00 37.76 2.69
176 177 2.680913 GCGCACTGCCGACTCAAAT 61.681 57.895 0.30 0.00 37.76 2.32
177 178 1.133253 CGCACTGCCGACTCAAATG 59.867 57.895 0.00 0.00 0.00 2.32
178 179 1.154150 GCACTGCCGACTCAAATGC 60.154 57.895 0.00 0.00 0.00 3.56
179 180 1.855213 GCACTGCCGACTCAAATGCA 61.855 55.000 0.00 0.00 31.84 3.96
180 181 0.592637 CACTGCCGACTCAAATGCAA 59.407 50.000 0.00 0.00 32.58 4.08
181 182 1.001487 CACTGCCGACTCAAATGCAAA 60.001 47.619 0.00 0.00 32.58 3.68
182 183 1.267806 ACTGCCGACTCAAATGCAAAG 59.732 47.619 0.00 0.00 32.58 2.77
183 184 0.039256 TGCCGACTCAAATGCAAAGC 60.039 50.000 0.00 0.00 0.00 3.51
184 185 0.242017 GCCGACTCAAATGCAAAGCT 59.758 50.000 0.00 0.00 0.00 3.74
185 186 1.973138 CCGACTCAAATGCAAAGCTG 58.027 50.000 0.00 0.00 0.00 4.24
186 187 1.401931 CCGACTCAAATGCAAAGCTGG 60.402 52.381 0.00 0.00 0.00 4.85
187 188 1.401931 CGACTCAAATGCAAAGCTGGG 60.402 52.381 0.00 0.00 0.00 4.45
188 189 0.319405 ACTCAAATGCAAAGCTGGGC 59.681 50.000 0.00 3.03 0.00 5.36
189 190 0.734942 CTCAAATGCAAAGCTGGGCG 60.735 55.000 0.00 0.00 0.00 6.13
190 191 1.738830 CAAATGCAAAGCTGGGCGG 60.739 57.895 0.00 0.00 0.00 6.13
191 192 1.907807 AAATGCAAAGCTGGGCGGA 60.908 52.632 0.00 0.00 0.00 5.54
192 193 2.158561 AAATGCAAAGCTGGGCGGAC 62.159 55.000 0.00 0.00 0.00 4.79
220 221 3.140814 GGCCGAGCCCAAATGGAC 61.141 66.667 0.00 0.00 44.06 4.02
221 222 2.361104 GCCGAGCCCAAATGGACA 60.361 61.111 0.00 0.00 37.39 4.02
222 223 1.976474 GCCGAGCCCAAATGGACAA 60.976 57.895 0.00 0.00 37.39 3.18
223 224 1.531739 GCCGAGCCCAAATGGACAAA 61.532 55.000 0.00 0.00 37.39 2.83
224 225 0.965439 CCGAGCCCAAATGGACAAAA 59.035 50.000 0.00 0.00 37.39 2.44
225 226 1.342819 CCGAGCCCAAATGGACAAAAA 59.657 47.619 0.00 0.00 37.39 1.94
226 227 2.610232 CCGAGCCCAAATGGACAAAAAG 60.610 50.000 0.00 0.00 37.39 2.27
227 228 2.416747 GAGCCCAAATGGACAAAAAGC 58.583 47.619 0.00 0.00 37.39 3.51
228 229 1.147473 GCCCAAATGGACAAAAAGCG 58.853 50.000 0.00 0.00 37.39 4.68
229 230 1.794512 CCCAAATGGACAAAAAGCGG 58.205 50.000 0.00 0.00 37.39 5.52
230 231 1.342819 CCCAAATGGACAAAAAGCGGA 59.657 47.619 0.00 0.00 37.39 5.54
231 232 2.028203 CCCAAATGGACAAAAAGCGGAT 60.028 45.455 0.00 0.00 37.39 4.18
232 233 3.194542 CCCAAATGGACAAAAAGCGGATA 59.805 43.478 0.00 0.00 37.39 2.59
233 234 4.322349 CCCAAATGGACAAAAAGCGGATAA 60.322 41.667 0.00 0.00 37.39 1.75
234 235 5.233988 CCAAATGGACAAAAAGCGGATAAA 58.766 37.500 0.00 0.00 37.39 1.40
235 236 5.874261 CCAAATGGACAAAAAGCGGATAAAT 59.126 36.000 0.00 0.00 37.39 1.40
236 237 7.038659 CCAAATGGACAAAAAGCGGATAAATA 58.961 34.615 0.00 0.00 37.39 1.40
237 238 7.010091 CCAAATGGACAAAAAGCGGATAAATAC 59.990 37.037 0.00 0.00 37.39 1.89
238 239 5.224562 TGGACAAAAAGCGGATAAATACG 57.775 39.130 0.00 0.00 37.13 3.06
245 246 2.427360 CGGATAAATACGCCGTCCG 58.573 57.895 0.00 0.00 44.72 4.79
254 255 4.020378 CGCCGTCCGTTTGGGTTG 62.020 66.667 0.00 0.00 37.00 3.77
255 256 3.666253 GCCGTCCGTTTGGGTTGG 61.666 66.667 0.00 0.00 37.00 3.77
256 257 3.666253 CCGTCCGTTTGGGTTGGC 61.666 66.667 0.00 0.00 37.00 4.52
257 258 2.593436 CGTCCGTTTGGGTTGGCT 60.593 61.111 0.00 0.00 37.00 4.75
258 259 2.903547 CGTCCGTTTGGGTTGGCTG 61.904 63.158 0.00 0.00 37.00 4.85
259 260 2.909965 TCCGTTTGGGTTGGCTGC 60.910 61.111 0.00 0.00 37.00 5.25
260 261 2.912025 CCGTTTGGGTTGGCTGCT 60.912 61.111 0.00 0.00 0.00 4.24
261 262 2.644992 CGTTTGGGTTGGCTGCTC 59.355 61.111 0.00 0.00 0.00 4.26
288 289 5.268544 GTGCTAATCACTTGCATACACATG 58.731 41.667 0.00 0.00 42.38 3.21
309 311 3.374988 TGCAGTGTGTGAGACAAAAAGAG 59.625 43.478 0.00 0.00 35.91 2.85
338 340 4.338964 TCATACATACAAGGGCATTTGCAG 59.661 41.667 4.74 0.00 44.36 4.41
355 357 4.860802 TGCAGGGAATCTCATCCTTAAA 57.139 40.909 0.00 0.00 39.57 1.52
357 359 5.769835 TGCAGGGAATCTCATCCTTAAATT 58.230 37.500 0.00 0.00 39.57 1.82
485 487 1.990614 GTCCTCCACCTCCACCTCC 60.991 68.421 0.00 0.00 0.00 4.30
611 638 3.728292 CTCCTGCCCCATTCCAGCC 62.728 68.421 0.00 0.00 0.00 4.85
779 809 4.802918 GCTTCACCTACTCCTTTTGCAGTA 60.803 45.833 0.00 0.00 0.00 2.74
877 907 2.426738 CCATCCTTTTTGCGCCTATTCA 59.573 45.455 4.18 0.00 0.00 2.57
887 932 2.006888 GCGCCTATTCAGCACAAGTTA 58.993 47.619 0.00 0.00 0.00 2.24
890 935 2.683362 GCCTATTCAGCACAAGTTACCC 59.317 50.000 0.00 0.00 0.00 3.69
933 988 1.317613 TCTTGTCAGCAATTTGGCGT 58.682 45.000 0.00 0.00 39.27 5.68
1416 1471 1.007734 GTGAGCGACCGTGTTCTCA 60.008 57.895 0.00 0.00 33.64 3.27
1417 1472 0.596600 GTGAGCGACCGTGTTCTCAA 60.597 55.000 0.00 0.00 37.33 3.02
1439 1494 2.292267 AGTTCTGCAACAGTGGAAGTG 58.708 47.619 0.00 0.00 44.80 3.16
1440 1495 1.024271 TTCTGCAACAGTGGAAGTGC 58.976 50.000 0.00 0.00 42.38 4.40
1441 1496 0.819259 TCTGCAACAGTGGAAGTGCC 60.819 55.000 0.00 0.00 42.38 5.01
1442 1497 1.077140 TGCAACAGTGGAAGTGCCA 60.077 52.632 0.00 0.00 46.96 4.92
1452 1507 3.557228 TGGAAGTGCCAAAATTTTGCT 57.443 38.095 22.90 13.19 45.87 3.91
1453 1508 3.204526 TGGAAGTGCCAAAATTTTGCTG 58.795 40.909 22.90 12.85 45.87 4.41
1454 1509 2.031769 GGAAGTGCCAAAATTTTGCTGC 60.032 45.455 22.90 20.92 36.86 5.25
1455 1510 2.328819 AGTGCCAAAATTTTGCTGCA 57.671 40.000 22.89 22.89 36.86 4.41
1456 1511 2.641305 AGTGCCAAAATTTTGCTGCAA 58.359 38.095 26.23 11.69 37.19 4.08
1457 1512 3.215975 AGTGCCAAAATTTTGCTGCAAT 58.784 36.364 26.23 23.84 37.19 3.56
1458 1513 3.251487 AGTGCCAAAATTTTGCTGCAATC 59.749 39.130 26.23 18.55 37.19 2.67
1459 1514 3.003482 GTGCCAAAATTTTGCTGCAATCA 59.997 39.130 26.23 6.57 37.19 2.57
1460 1515 3.630769 TGCCAAAATTTTGCTGCAATCAA 59.369 34.783 23.89 8.93 34.15 2.57
1461 1516 3.976306 GCCAAAATTTTGCTGCAATCAAC 59.024 39.130 22.90 0.00 36.86 3.18
1462 1517 4.497674 GCCAAAATTTTGCTGCAATCAACA 60.498 37.500 22.90 0.00 36.86 3.33
1463 1518 5.764131 CCAAAATTTTGCTGCAATCAACAT 58.236 33.333 22.90 1.27 36.86 2.71
1466 1521 7.535940 CCAAAATTTTGCTGCAATCAACATTAG 59.464 33.333 22.90 2.18 36.86 1.73
1467 1522 7.733402 AAATTTTGCTGCAATCAACATTAGT 57.267 28.000 16.77 0.00 0.00 2.24
1468 1523 8.830201 AAATTTTGCTGCAATCAACATTAGTA 57.170 26.923 16.77 0.00 0.00 1.82
1469 1524 8.470040 AATTTTGCTGCAATCAACATTAGTAG 57.530 30.769 16.77 0.00 0.00 2.57
1470 1525 6.816134 TTTGCTGCAATCAACATTAGTAGA 57.184 33.333 16.77 0.00 0.00 2.59
1471 1526 7.395190 TTTGCTGCAATCAACATTAGTAGAT 57.605 32.000 16.77 0.00 0.00 1.98
1472 1527 6.367686 TGCTGCAATCAACATTAGTAGATG 57.632 37.500 0.00 0.00 0.00 2.90
1473 1528 5.882000 TGCTGCAATCAACATTAGTAGATGT 59.118 36.000 0.00 0.00 41.83 3.06
1474 1529 6.037500 TGCTGCAATCAACATTAGTAGATGTC 59.962 38.462 0.00 0.00 39.25 3.06
1475 1530 6.037500 GCTGCAATCAACATTAGTAGATGTCA 59.962 38.462 0.00 0.00 39.25 3.58
1476 1531 7.414429 GCTGCAATCAACATTAGTAGATGTCAA 60.414 37.037 0.00 0.00 39.25 3.18
1477 1532 7.977904 TGCAATCAACATTAGTAGATGTCAAG 58.022 34.615 0.00 0.00 39.25 3.02
1478 1533 7.607607 TGCAATCAACATTAGTAGATGTCAAGT 59.392 33.333 0.00 0.00 39.25 3.16
1479 1534 8.454106 GCAATCAACATTAGTAGATGTCAAGTT 58.546 33.333 0.00 0.00 39.25 2.66
1483 1538 9.990360 TCAACATTAGTAGATGTCAAGTTTACA 57.010 29.630 0.00 0.00 39.25 2.41
1485 1540 8.462143 ACATTAGTAGATGTCAAGTTTACACG 57.538 34.615 0.00 0.00 35.39 4.49
1486 1541 8.086522 ACATTAGTAGATGTCAAGTTTACACGT 58.913 33.333 0.00 0.00 35.39 4.49
1487 1542 8.922676 CATTAGTAGATGTCAAGTTTACACGTT 58.077 33.333 0.00 0.00 0.00 3.99
1489 1544 9.616634 TTAGTAGATGTCAAGTTTACACGTTAG 57.383 33.333 0.00 0.00 0.00 2.34
1490 1545 7.655490 AGTAGATGTCAAGTTTACACGTTAGT 58.345 34.615 0.00 0.00 0.00 2.24
1502 1557 3.617540 CACGTTAGTGTTTGCCATCAA 57.382 42.857 0.00 0.00 43.15 2.57
1503 1558 3.554524 CACGTTAGTGTTTGCCATCAAG 58.445 45.455 0.00 0.00 43.15 3.02
1504 1559 2.031157 ACGTTAGTGTTTGCCATCAAGC 60.031 45.455 0.00 0.00 33.12 4.01
1505 1560 2.226437 CGTTAGTGTTTGCCATCAAGCT 59.774 45.455 0.00 0.00 34.92 3.74
1527 1583 4.287238 ACTTAAACTGCTTCCGTGTTTG 57.713 40.909 0.00 0.00 35.77 2.93
1890 1991 2.079925 GAGAGGATTGACACTTGGTGC 58.920 52.381 0.00 0.00 36.98 5.01
2149 2250 0.546747 TTCCCACTCCCCTACCACAG 60.547 60.000 0.00 0.00 0.00 3.66
2164 2265 3.620488 ACCACAGTCATCAGTGTTTGTT 58.380 40.909 0.00 0.00 33.52 2.83
2371 2472 2.031516 CCGTCAGGACTTGCTGCAG 61.032 63.158 10.11 10.11 41.02 4.41
2452 2553 0.471617 ATGGCCTCTGCATAGTGACC 59.528 55.000 3.32 0.00 40.13 4.02
2467 2568 1.839994 GTGACCAGGATGATGGAAGGA 59.160 52.381 0.00 0.00 43.57 3.36
2507 2608 7.774157 ACATCATTATGCAGAGAAACAAGAGAT 59.226 33.333 0.00 0.00 36.50 2.75
2695 2796 1.469423 GCTGGCGAGGTTACTGAGTAC 60.469 57.143 0.00 0.00 0.00 2.73
2752 2853 9.827411 GAGGTTAGTTTTCATGACTTGATTTAC 57.173 33.333 0.00 0.00 33.34 2.01
2753 2854 9.349713 AGGTTAGTTTTCATGACTTGATTTACA 57.650 29.630 0.00 0.00 33.34 2.41
2866 2989 6.128363 GGATCTTCAAGTAACCCAGTAAAACG 60.128 42.308 0.00 0.00 0.00 3.60
2870 2993 0.798159 GTAACCCAGTAAAACGGCGG 59.202 55.000 13.24 0.00 0.00 6.13
2890 3013 4.411327 CGGCATTAACGATGAAACATGTT 58.589 39.130 4.92 4.92 38.03 2.71
2940 3064 5.482175 AGCACATAGAACTCTAGGACAAACT 59.518 40.000 5.47 0.00 34.61 2.66
3113 3247 4.020543 GTCCACTCAGTAGTCAGGAATCT 58.979 47.826 0.00 0.00 31.48 2.40
3156 3290 5.713025 ACCAATTTTGTGCTGCTATTGTAG 58.287 37.500 0.00 0.00 0.00 2.74
3312 3449 0.801067 GCAACGTCTACAGCTACGGG 60.801 60.000 11.18 4.43 43.25 5.28
3742 3892 6.075762 TGCATGCATCTTGGATTATGTTAC 57.924 37.500 18.46 0.00 0.00 2.50
3756 3906 6.499350 GGATTATGTTACTAGGTCCCCACATA 59.501 42.308 0.00 0.00 0.00 2.29
3758 3908 5.825593 ATGTTACTAGGTCCCCACATATG 57.174 43.478 0.00 0.00 0.00 1.78
3803 3959 6.538021 TCAAGAGAGAGCATCAAAGATTTAGC 59.462 38.462 0.00 0.00 37.82 3.09
3804 3960 5.987098 AGAGAGAGCATCAAAGATTTAGCA 58.013 37.500 0.00 0.00 37.82 3.49
3864 4031 3.956848 TGCTCTCCATATCCTATCATCCG 59.043 47.826 0.00 0.00 0.00 4.18
3952 4128 5.278169 GCTGCTATAAACAATGGTGGATCTG 60.278 44.000 0.00 0.00 0.00 2.90
4033 4256 1.243902 GGGTCCAAATTTGACGAGCA 58.756 50.000 19.86 0.00 0.00 4.26
4034 4257 1.611491 GGGTCCAAATTTGACGAGCAA 59.389 47.619 19.86 0.00 33.88 3.91
4035 4258 2.607038 GGGTCCAAATTTGACGAGCAAC 60.607 50.000 19.86 4.00 35.91 4.17
4036 4259 2.293399 GGTCCAAATTTGACGAGCAACT 59.707 45.455 19.86 0.00 35.91 3.16
4039 4262 5.335661 GGTCCAAATTTGACGAGCAACTAAT 60.336 40.000 19.86 0.00 35.91 1.73
4094 4317 4.598062 CGATTAATCAGTGACTGAGCGTA 58.402 43.478 20.90 9.90 44.08 4.42
4095 4318 5.034797 CGATTAATCAGTGACTGAGCGTAA 58.965 41.667 20.90 17.13 44.08 3.18
4096 4319 5.687730 CGATTAATCAGTGACTGAGCGTAAT 59.312 40.000 20.90 20.38 44.08 1.89
4097 4320 6.345329 CGATTAATCAGTGACTGAGCGTAATG 60.345 42.308 20.90 13.12 44.08 1.90
4098 4321 3.876274 ATCAGTGACTGAGCGTAATGT 57.124 42.857 20.90 0.00 44.08 2.71
4231 4461 6.424883 AGATGATGATGCTTTCTCTTTTCCT 58.575 36.000 0.00 0.00 0.00 3.36
4232 4462 6.543100 AGATGATGATGCTTTCTCTTTTCCTC 59.457 38.462 0.00 0.00 0.00 3.71
4233 4463 5.813383 TGATGATGCTTTCTCTTTTCCTCT 58.187 37.500 0.00 0.00 0.00 3.69
4235 4465 5.954296 TGATGCTTTCTCTTTTCCTCTTG 57.046 39.130 0.00 0.00 0.00 3.02
4236 4466 5.380043 TGATGCTTTCTCTTTTCCTCTTGT 58.620 37.500 0.00 0.00 0.00 3.16
4237 4467 5.829924 TGATGCTTTCTCTTTTCCTCTTGTT 59.170 36.000 0.00 0.00 0.00 2.83
4238 4468 5.505173 TGCTTTCTCTTTTCCTCTTGTTG 57.495 39.130 0.00 0.00 0.00 3.33
4239 4469 5.192927 TGCTTTCTCTTTTCCTCTTGTTGA 58.807 37.500 0.00 0.00 0.00 3.18
4240 4470 5.297776 TGCTTTCTCTTTTCCTCTTGTTGAG 59.702 40.000 0.00 0.00 42.30 3.02
4241 4471 5.529060 GCTTTCTCTTTTCCTCTTGTTGAGA 59.471 40.000 0.00 0.00 45.39 3.27
4242 4472 6.038714 GCTTTCTCTTTTCCTCTTGTTGAGAA 59.961 38.462 0.00 0.00 45.39 2.87
4243 4473 7.255416 GCTTTCTCTTTTCCTCTTGTTGAGAAT 60.255 37.037 0.00 0.00 45.39 2.40
4244 4474 7.502120 TTCTCTTTTCCTCTTGTTGAGAATG 57.498 36.000 0.00 0.00 45.39 2.67
4245 4475 6.595682 TCTCTTTTCCTCTTGTTGAGAATGT 58.404 36.000 0.00 0.00 45.39 2.71
4246 4476 7.735917 TCTCTTTTCCTCTTGTTGAGAATGTA 58.264 34.615 0.00 0.00 45.39 2.29
4247 4477 7.875041 TCTCTTTTCCTCTTGTTGAGAATGTAG 59.125 37.037 0.00 0.00 45.39 2.74
4248 4478 7.735917 TCTTTTCCTCTTGTTGAGAATGTAGA 58.264 34.615 0.00 0.00 45.39 2.59
4249 4479 8.210946 TCTTTTCCTCTTGTTGAGAATGTAGAA 58.789 33.333 0.00 0.00 45.39 2.10
4250 4480 7.730364 TTTCCTCTTGTTGAGAATGTAGAAC 57.270 36.000 0.00 0.00 45.39 3.01
4251 4481 5.794894 TCCTCTTGTTGAGAATGTAGAACC 58.205 41.667 0.00 0.00 45.39 3.62
4252 4482 5.544176 TCCTCTTGTTGAGAATGTAGAACCT 59.456 40.000 0.00 0.00 45.39 3.50
4253 4483 6.724441 TCCTCTTGTTGAGAATGTAGAACCTA 59.276 38.462 0.00 0.00 45.39 3.08
4254 4484 6.814146 CCTCTTGTTGAGAATGTAGAACCTAC 59.186 42.308 0.00 0.00 45.39 3.18
4255 4485 6.387465 TCTTGTTGAGAATGTAGAACCTACG 58.613 40.000 0.00 0.00 0.00 3.51
4256 4486 4.491676 TGTTGAGAATGTAGAACCTACGC 58.508 43.478 0.00 0.00 0.00 4.42
4257 4487 4.219944 TGTTGAGAATGTAGAACCTACGCT 59.780 41.667 0.00 0.00 0.00 5.07
4258 4488 4.371855 TGAGAATGTAGAACCTACGCTG 57.628 45.455 0.00 0.00 0.00 5.18
4259 4489 3.117046 GAGAATGTAGAACCTACGCTGC 58.883 50.000 0.00 0.00 0.00 5.25
4260 4490 2.496070 AGAATGTAGAACCTACGCTGCA 59.504 45.455 0.00 0.00 0.00 4.41
4261 4491 3.133003 AGAATGTAGAACCTACGCTGCAT 59.867 43.478 0.00 0.00 38.77 3.96
4262 4492 2.579207 TGTAGAACCTACGCTGCATC 57.421 50.000 0.00 0.00 0.00 3.91
4263 4493 2.100197 TGTAGAACCTACGCTGCATCT 58.900 47.619 0.00 0.00 0.00 2.90
4264 4494 2.496070 TGTAGAACCTACGCTGCATCTT 59.504 45.455 0.00 0.00 0.00 2.40
4265 4495 3.697542 TGTAGAACCTACGCTGCATCTTA 59.302 43.478 0.00 0.00 0.00 2.10
4266 4496 3.166489 AGAACCTACGCTGCATCTTAC 57.834 47.619 0.00 0.00 0.00 2.34
4267 4497 2.496070 AGAACCTACGCTGCATCTTACA 59.504 45.455 0.00 0.00 0.00 2.41
4268 4498 3.133003 AGAACCTACGCTGCATCTTACAT 59.867 43.478 0.00 0.00 0.00 2.29
4269 4499 2.826428 ACCTACGCTGCATCTTACATG 58.174 47.619 0.00 0.00 0.00 3.21
4270 4500 2.138320 CCTACGCTGCATCTTACATGG 58.862 52.381 0.00 0.00 0.00 3.66
4271 4501 2.224042 CCTACGCTGCATCTTACATGGA 60.224 50.000 0.00 0.00 0.00 3.41
4272 4502 2.627515 ACGCTGCATCTTACATGGAT 57.372 45.000 0.00 0.00 0.00 3.41
4273 4503 2.923121 ACGCTGCATCTTACATGGATT 58.077 42.857 0.00 0.00 0.00 3.01
4274 4504 2.874701 ACGCTGCATCTTACATGGATTC 59.125 45.455 0.00 0.00 0.00 2.52
4275 4505 2.225019 CGCTGCATCTTACATGGATTCC 59.775 50.000 0.00 0.00 0.00 3.01
4276 4506 3.484407 GCTGCATCTTACATGGATTCCT 58.516 45.455 3.95 0.00 0.00 3.36
4277 4507 3.887716 GCTGCATCTTACATGGATTCCTT 59.112 43.478 3.95 0.00 0.00 3.36
4278 4508 4.261489 GCTGCATCTTACATGGATTCCTTG 60.261 45.833 15.20 15.20 35.21 3.61
4279 4509 4.209538 TGCATCTTACATGGATTCCTTGG 58.790 43.478 19.55 5.63 33.63 3.61
4280 4510 4.079844 TGCATCTTACATGGATTCCTTGGA 60.080 41.667 19.55 10.85 33.63 3.53
4281 4511 4.889409 GCATCTTACATGGATTCCTTGGAA 59.111 41.667 19.55 16.78 33.63 3.53
4282 4512 5.537674 GCATCTTACATGGATTCCTTGGAAT 59.462 40.000 19.55 14.09 32.24 3.01
4283 4513 6.294397 GCATCTTACATGGATTCCTTGGAATC 60.294 42.308 26.08 26.08 39.99 2.52
4289 4519 2.744352 GATTCCTTGGAATCCAGGCT 57.256 50.000 24.51 0.84 36.00 4.58
4290 4520 2.305009 GATTCCTTGGAATCCAGGCTG 58.695 52.381 24.51 7.75 36.00 4.85
4291 4521 1.371467 TTCCTTGGAATCCAGGCTGA 58.629 50.000 17.94 2.24 33.81 4.26
4292 4522 1.600058 TCCTTGGAATCCAGGCTGAT 58.400 50.000 17.94 4.81 33.81 2.90
4293 4523 2.775418 TCCTTGGAATCCAGGCTGATA 58.225 47.619 17.94 3.75 33.81 2.15
4294 4524 3.330198 TCCTTGGAATCCAGGCTGATAT 58.670 45.455 17.94 6.27 33.81 1.63
4295 4525 4.502415 TCCTTGGAATCCAGGCTGATATA 58.498 43.478 17.94 0.00 33.81 0.86
4296 4526 4.913355 TCCTTGGAATCCAGGCTGATATAA 59.087 41.667 17.94 2.66 33.81 0.98
4297 4527 5.006386 CCTTGGAATCCAGGCTGATATAAC 58.994 45.833 17.94 6.42 33.81 1.89
4298 4528 4.640771 TGGAATCCAGGCTGATATAACC 57.359 45.455 17.94 14.96 0.00 2.85
4299 4529 4.242811 TGGAATCCAGGCTGATATAACCT 58.757 43.478 17.94 0.00 0.00 3.50
4300 4530 4.665009 TGGAATCCAGGCTGATATAACCTT 59.335 41.667 17.94 0.00 0.00 3.50
4301 4531 5.134339 TGGAATCCAGGCTGATATAACCTTT 59.866 40.000 17.94 0.00 0.00 3.11
4302 4532 6.071320 GGAATCCAGGCTGATATAACCTTTT 58.929 40.000 17.94 0.00 0.00 2.27
4303 4533 6.551227 GGAATCCAGGCTGATATAACCTTTTT 59.449 38.462 17.94 0.00 0.00 1.94
4364 4594 9.624697 TTAATCTTTTAATCATGACAGTGCAAC 57.375 29.630 0.00 0.00 0.00 4.17
4365 4595 5.688823 TCTTTTAATCATGACAGTGCAACG 58.311 37.500 0.00 0.00 45.86 4.10
4366 4596 5.468409 TCTTTTAATCATGACAGTGCAACGA 59.532 36.000 0.00 0.00 45.86 3.85
4367 4597 5.681337 TTTAATCATGACAGTGCAACGAA 57.319 34.783 0.00 0.00 45.86 3.85
4368 4598 3.542712 AATCATGACAGTGCAACGAAC 57.457 42.857 0.00 0.00 45.86 3.95
4369 4599 1.225855 TCATGACAGTGCAACGAACC 58.774 50.000 0.00 0.00 45.86 3.62
4370 4600 0.238289 CATGACAGTGCAACGAACCC 59.762 55.000 0.00 0.00 45.86 4.11
4371 4601 0.179032 ATGACAGTGCAACGAACCCA 60.179 50.000 0.00 0.00 45.86 4.51
4372 4602 0.179032 TGACAGTGCAACGAACCCAT 60.179 50.000 0.00 0.00 45.86 4.00
4373 4603 1.070914 TGACAGTGCAACGAACCCATA 59.929 47.619 0.00 0.00 45.86 2.74
4374 4604 2.147958 GACAGTGCAACGAACCCATAA 58.852 47.619 0.00 0.00 45.86 1.90
4375 4605 2.550606 GACAGTGCAACGAACCCATAAA 59.449 45.455 0.00 0.00 45.86 1.40
4376 4606 3.153919 ACAGTGCAACGAACCCATAAAT 58.846 40.909 0.00 0.00 45.86 1.40
4377 4607 4.328536 ACAGTGCAACGAACCCATAAATA 58.671 39.130 0.00 0.00 45.86 1.40
4378 4608 4.762765 ACAGTGCAACGAACCCATAAATAA 59.237 37.500 0.00 0.00 45.86 1.40
4379 4609 5.417580 ACAGTGCAACGAACCCATAAATAAT 59.582 36.000 0.00 0.00 45.86 1.28
4380 4610 6.600032 ACAGTGCAACGAACCCATAAATAATA 59.400 34.615 0.00 0.00 45.86 0.98
4381 4611 7.121463 ACAGTGCAACGAACCCATAAATAATAA 59.879 33.333 0.00 0.00 45.86 1.40
4382 4612 7.971168 CAGTGCAACGAACCCATAAATAATAAA 59.029 33.333 0.00 0.00 45.86 1.40
4383 4613 8.524487 AGTGCAACGAACCCATAAATAATAAAA 58.476 29.630 0.00 0.00 45.86 1.52
4384 4614 9.141400 GTGCAACGAACCCATAAATAATAAAAA 57.859 29.630 0.00 0.00 0.00 1.94
4385 4615 9.877178 TGCAACGAACCCATAAATAATAAAAAT 57.123 25.926 0.00 0.00 0.00 1.82
4405 4635 8.697507 AAAAATTACATCCAGATCCATAGACC 57.302 34.615 0.00 0.00 0.00 3.85
4406 4636 7.392766 AAATTACATCCAGATCCATAGACCA 57.607 36.000 0.00 0.00 0.00 4.02
4407 4637 5.808366 TTACATCCAGATCCATAGACCAC 57.192 43.478 0.00 0.00 0.00 4.16
4408 4638 2.975489 ACATCCAGATCCATAGACCACC 59.025 50.000 0.00 0.00 0.00 4.61
4409 4639 1.704641 TCCAGATCCATAGACCACCG 58.295 55.000 0.00 0.00 0.00 4.94
4410 4640 1.216930 TCCAGATCCATAGACCACCGA 59.783 52.381 0.00 0.00 0.00 4.69
4411 4641 1.615883 CCAGATCCATAGACCACCGAG 59.384 57.143 0.00 0.00 0.00 4.63
4412 4642 1.000283 CAGATCCATAGACCACCGAGC 60.000 57.143 0.00 0.00 0.00 5.03
4413 4643 0.039074 GATCCATAGACCACCGAGCG 60.039 60.000 0.00 0.00 0.00 5.03
4414 4644 0.467474 ATCCATAGACCACCGAGCGA 60.467 55.000 0.00 0.00 0.00 4.93
4415 4645 1.065928 CCATAGACCACCGAGCGAC 59.934 63.158 0.00 0.00 0.00 5.19
4416 4646 1.298413 CATAGACCACCGAGCGACG 60.298 63.158 0.00 0.00 42.18 5.12
4417 4647 1.450848 ATAGACCACCGAGCGACGA 60.451 57.895 0.00 0.00 45.77 4.20
4418 4648 1.437772 ATAGACCACCGAGCGACGAG 61.438 60.000 0.00 1.71 45.77 4.18
4419 4649 2.793160 TAGACCACCGAGCGACGAGT 62.793 60.000 0.00 2.97 45.77 4.18
4420 4650 2.359107 ACCACCGAGCGACGAGTA 60.359 61.111 0.00 0.00 45.77 2.59
4421 4651 2.099831 CCACCGAGCGACGAGTAC 59.900 66.667 0.00 0.00 45.77 2.73
4422 4652 2.683859 CCACCGAGCGACGAGTACA 61.684 63.158 0.00 0.00 45.77 2.90
4423 4653 1.208358 CACCGAGCGACGAGTACAA 59.792 57.895 0.00 0.00 45.77 2.41
4424 4654 0.386352 CACCGAGCGACGAGTACAAA 60.386 55.000 0.00 0.00 45.77 2.83
4425 4655 0.386478 ACCGAGCGACGAGTACAAAC 60.386 55.000 0.00 0.00 45.77 2.93
4426 4656 0.386352 CCGAGCGACGAGTACAAACA 60.386 55.000 0.00 0.00 45.77 2.83
4427 4657 0.701303 CGAGCGACGAGTACAAACAC 59.299 55.000 0.00 0.00 45.77 3.32
4428 4658 1.662309 CGAGCGACGAGTACAAACACT 60.662 52.381 0.00 0.00 45.77 3.55
4429 4659 2.411935 CGAGCGACGAGTACAAACACTA 60.412 50.000 0.00 0.00 45.77 2.74
4430 4660 3.558505 GAGCGACGAGTACAAACACTAA 58.441 45.455 0.00 0.00 0.00 2.24
4431 4661 3.968649 AGCGACGAGTACAAACACTAAA 58.031 40.909 0.00 0.00 0.00 1.85
4432 4662 3.979495 AGCGACGAGTACAAACACTAAAG 59.021 43.478 0.00 0.00 0.00 1.85
4433 4663 3.421440 GCGACGAGTACAAACACTAAAGC 60.421 47.826 0.00 0.00 0.00 3.51
4434 4664 3.181556 CGACGAGTACAAACACTAAAGCG 60.182 47.826 0.00 0.00 0.00 4.68
4435 4665 3.968649 ACGAGTACAAACACTAAAGCGA 58.031 40.909 0.00 0.00 0.00 4.93
4436 4666 3.979495 ACGAGTACAAACACTAAAGCGAG 59.021 43.478 0.00 0.00 0.00 5.03
4437 4667 3.181543 CGAGTACAAACACTAAAGCGAGC 60.182 47.826 0.00 0.00 0.00 5.03
4438 4668 3.064931 AGTACAAACACTAAAGCGAGCC 58.935 45.455 0.00 0.00 0.00 4.70
4439 4669 1.235724 ACAAACACTAAAGCGAGCCC 58.764 50.000 0.00 0.00 0.00 5.19
4440 4670 1.234821 CAAACACTAAAGCGAGCCCA 58.765 50.000 0.00 0.00 0.00 5.36
4441 4671 1.606668 CAAACACTAAAGCGAGCCCAA 59.393 47.619 0.00 0.00 0.00 4.12
4442 4672 1.523758 AACACTAAAGCGAGCCCAAG 58.476 50.000 0.00 0.00 0.00 3.61
4443 4673 0.321653 ACACTAAAGCGAGCCCAAGG 60.322 55.000 0.00 0.00 0.00 3.61
4470 4700 4.883354 GGCATTGCCCCTCCCTCG 62.883 72.222 17.28 0.00 44.06 4.63
4472 4702 4.883354 CATTGCCCCTCCCTCGCC 62.883 72.222 0.00 0.00 0.00 5.54
4489 4719 4.707791 CGGAGCCGGGTAAAACTT 57.292 55.556 5.91 0.00 35.56 2.66
4490 4720 2.168054 CGGAGCCGGGTAAAACTTG 58.832 57.895 5.91 0.00 35.56 3.16
4491 4721 0.604511 CGGAGCCGGGTAAAACTTGT 60.605 55.000 5.91 0.00 35.56 3.16
4492 4722 1.612676 GGAGCCGGGTAAAACTTGTT 58.387 50.000 5.91 0.00 0.00 2.83
4493 4723 1.268625 GGAGCCGGGTAAAACTTGTTG 59.731 52.381 5.91 0.00 0.00 3.33
4494 4724 1.951602 GAGCCGGGTAAAACTTGTTGT 59.048 47.619 5.91 0.00 0.00 3.32
4495 4725 2.359848 GAGCCGGGTAAAACTTGTTGTT 59.640 45.455 5.91 0.00 41.29 2.83
4496 4726 2.100087 AGCCGGGTAAAACTTGTTGTTG 59.900 45.455 3.10 0.00 39.13 3.33
4497 4727 2.159212 GCCGGGTAAAACTTGTTGTTGT 60.159 45.455 2.18 0.00 39.13 3.32
4498 4728 3.066481 GCCGGGTAAAACTTGTTGTTGTA 59.934 43.478 2.18 0.00 39.13 2.41
4499 4729 4.790444 GCCGGGTAAAACTTGTTGTTGTAG 60.790 45.833 2.18 0.00 39.13 2.74
4500 4730 4.575645 CCGGGTAAAACTTGTTGTTGTAGA 59.424 41.667 0.00 0.00 39.13 2.59
4501 4731 5.239963 CCGGGTAAAACTTGTTGTTGTAGAT 59.760 40.000 0.00 0.00 39.13 1.98
4502 4732 6.427547 CCGGGTAAAACTTGTTGTTGTAGATA 59.572 38.462 0.00 0.00 39.13 1.98
4503 4733 7.360607 CCGGGTAAAACTTGTTGTTGTAGATAG 60.361 40.741 0.00 0.00 39.13 2.08
4504 4734 7.172019 CGGGTAAAACTTGTTGTTGTAGATAGT 59.828 37.037 0.00 0.00 39.13 2.12
4505 4735 8.501580 GGGTAAAACTTGTTGTTGTAGATAGTC 58.498 37.037 0.00 0.00 39.13 2.59
4506 4736 8.501580 GGTAAAACTTGTTGTTGTAGATAGTCC 58.498 37.037 0.00 0.00 39.13 3.85
4507 4737 6.780706 AAACTTGTTGTTGTAGATAGTCCG 57.219 37.500 0.00 0.00 39.13 4.79
4508 4738 4.817517 ACTTGTTGTTGTAGATAGTCCGG 58.182 43.478 0.00 0.00 0.00 5.14
4509 4739 4.525487 ACTTGTTGTTGTAGATAGTCCGGA 59.475 41.667 0.00 0.00 0.00 5.14
4510 4740 5.011329 ACTTGTTGTTGTAGATAGTCCGGAA 59.989 40.000 5.23 0.00 0.00 4.30
4511 4741 5.068234 TGTTGTTGTAGATAGTCCGGAAG 57.932 43.478 5.23 0.00 0.00 3.46
4512 4742 4.525487 TGTTGTTGTAGATAGTCCGGAAGT 59.475 41.667 5.23 0.00 0.00 3.01
4513 4743 4.978083 TGTTGTAGATAGTCCGGAAGTC 57.022 45.455 5.23 4.63 0.00 3.01
4514 4744 3.376234 TGTTGTAGATAGTCCGGAAGTCG 59.624 47.826 5.23 0.00 38.88 4.18
4515 4745 3.272574 TGTAGATAGTCCGGAAGTCGT 57.727 47.619 5.23 0.00 37.11 4.34
4516 4746 3.614092 TGTAGATAGTCCGGAAGTCGTT 58.386 45.455 5.23 0.00 37.11 3.85
4517 4747 3.376234 TGTAGATAGTCCGGAAGTCGTTG 59.624 47.826 5.23 0.00 37.11 4.10
4518 4748 2.444421 AGATAGTCCGGAAGTCGTTGT 58.556 47.619 5.23 0.00 37.11 3.32
4519 4749 2.163815 AGATAGTCCGGAAGTCGTTGTG 59.836 50.000 5.23 0.00 37.11 3.33
4520 4750 0.038892 TAGTCCGGAAGTCGTTGTGC 60.039 55.000 5.23 0.00 37.11 4.57
4521 4751 1.300697 GTCCGGAAGTCGTTGTGCT 60.301 57.895 5.23 0.00 37.11 4.40
4522 4752 0.038892 GTCCGGAAGTCGTTGTGCTA 60.039 55.000 5.23 0.00 37.11 3.49
4523 4753 0.675083 TCCGGAAGTCGTTGTGCTAA 59.325 50.000 0.00 0.00 37.11 3.09
4524 4754 1.068474 CCGGAAGTCGTTGTGCTAAG 58.932 55.000 0.00 0.00 37.11 2.18
4525 4755 1.068474 CGGAAGTCGTTGTGCTAAGG 58.932 55.000 0.00 0.00 0.00 2.69
4526 4756 0.796927 GGAAGTCGTTGTGCTAAGGC 59.203 55.000 0.00 0.00 39.26 4.35
4527 4757 0.796927 GAAGTCGTTGTGCTAAGGCC 59.203 55.000 0.00 0.00 37.74 5.19
4528 4758 0.605589 AAGTCGTTGTGCTAAGGCCC 60.606 55.000 0.00 0.00 37.74 5.80
4529 4759 2.038837 GTCGTTGTGCTAAGGCCCC 61.039 63.158 0.00 0.00 37.74 5.80
4530 4760 2.033448 CGTTGTGCTAAGGCCCCA 59.967 61.111 0.00 0.00 37.74 4.96
4531 4761 2.332654 CGTTGTGCTAAGGCCCCAC 61.333 63.158 0.00 2.51 37.74 4.61
4532 4762 2.033448 TTGTGCTAAGGCCCCACG 59.967 61.111 0.00 0.00 37.74 4.94
4533 4763 3.561120 TTGTGCTAAGGCCCCACGG 62.561 63.158 0.00 0.00 37.74 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.096231 TCCAAAATATCACCGCAGTTCATG 59.904 41.667 0.00 0.00 0.00 3.07
14 15 4.269183 TCCAAAATATCACCGCAGTTCAT 58.731 39.130 0.00 0.00 0.00 2.57
15 16 3.680490 TCCAAAATATCACCGCAGTTCA 58.320 40.909 0.00 0.00 0.00 3.18
16 17 4.662145 CTTCCAAAATATCACCGCAGTTC 58.338 43.478 0.00 0.00 0.00 3.01
17 18 3.119495 GCTTCCAAAATATCACCGCAGTT 60.119 43.478 0.00 0.00 0.00 3.16
18 19 2.423538 GCTTCCAAAATATCACCGCAGT 59.576 45.455 0.00 0.00 0.00 4.40
19 20 2.223572 GGCTTCCAAAATATCACCGCAG 60.224 50.000 0.00 0.00 0.00 5.18
20 21 1.748493 GGCTTCCAAAATATCACCGCA 59.252 47.619 0.00 0.00 0.00 5.69
21 22 1.268539 CGGCTTCCAAAATATCACCGC 60.269 52.381 0.00 0.00 32.10 5.68
22 23 1.333619 CCGGCTTCCAAAATATCACCG 59.666 52.381 0.00 0.00 39.11 4.94
23 24 1.067060 GCCGGCTTCCAAAATATCACC 59.933 52.381 22.15 0.00 0.00 4.02
24 25 1.748493 TGCCGGCTTCCAAAATATCAC 59.252 47.619 29.70 0.00 0.00 3.06
25 26 2.136298 TGCCGGCTTCCAAAATATCA 57.864 45.000 29.70 0.00 0.00 2.15
26 27 3.181476 ACATTGCCGGCTTCCAAAATATC 60.181 43.478 29.70 0.00 0.00 1.63
27 28 2.765699 ACATTGCCGGCTTCCAAAATAT 59.234 40.909 29.70 3.60 0.00 1.28
28 29 2.175202 ACATTGCCGGCTTCCAAAATA 58.825 42.857 29.70 0.00 0.00 1.40
29 30 0.975887 ACATTGCCGGCTTCCAAAAT 59.024 45.000 29.70 14.95 0.00 1.82
30 31 1.621992 TACATTGCCGGCTTCCAAAA 58.378 45.000 29.70 13.02 0.00 2.44
31 32 1.476085 CATACATTGCCGGCTTCCAAA 59.524 47.619 29.70 13.86 0.00 3.28
32 33 1.102154 CATACATTGCCGGCTTCCAA 58.898 50.000 29.70 14.30 0.00 3.53
33 34 1.383456 GCATACATTGCCGGCTTCCA 61.383 55.000 29.70 9.46 46.15 3.53
34 35 1.360192 GCATACATTGCCGGCTTCC 59.640 57.895 29.70 0.00 46.15 3.46
43 44 2.328989 CAGCGCCGGCATACATTG 59.671 61.111 28.98 9.29 43.41 2.82
44 45 2.901840 CCAGCGCCGGCATACATT 60.902 61.111 28.98 0.92 43.41 2.71
58 59 2.438975 ATGCCGACACCATGCCAG 60.439 61.111 0.00 0.00 0.00 4.85
59 60 2.555302 ATCATGCCGACACCATGCCA 62.555 55.000 0.00 0.00 39.83 4.92
60 61 1.789078 GATCATGCCGACACCATGCC 61.789 60.000 0.00 0.00 39.83 4.40
61 62 0.816825 AGATCATGCCGACACCATGC 60.817 55.000 0.00 0.00 39.83 4.06
62 63 2.531522 TAGATCATGCCGACACCATG 57.468 50.000 0.00 0.00 41.03 3.66
63 64 2.289882 CCATAGATCATGCCGACACCAT 60.290 50.000 0.00 0.00 32.84 3.55
64 65 1.070601 CCATAGATCATGCCGACACCA 59.929 52.381 0.00 0.00 32.84 4.17
65 66 1.800805 CCATAGATCATGCCGACACC 58.199 55.000 0.00 0.00 32.84 4.16
66 67 1.151668 GCCATAGATCATGCCGACAC 58.848 55.000 0.00 0.00 32.84 3.67
67 68 0.035317 GGCCATAGATCATGCCGACA 59.965 55.000 0.00 0.00 32.84 4.35
68 69 2.846371 GGCCATAGATCATGCCGAC 58.154 57.895 0.00 0.00 32.84 4.79
70 71 3.880591 CGGCCATAGATCATGCCG 58.119 61.111 18.33 18.33 43.16 5.69
71 72 1.002868 AGCGGCCATAGATCATGCC 60.003 57.895 2.24 0.00 32.84 4.40
72 73 1.303799 CCAGCGGCCATAGATCATGC 61.304 60.000 2.24 0.00 32.84 4.06
73 74 1.303799 GCCAGCGGCCATAGATCATG 61.304 60.000 2.24 0.00 44.06 3.07
74 75 1.002868 GCCAGCGGCCATAGATCAT 60.003 57.895 2.24 0.00 44.06 2.45
75 76 2.427320 GCCAGCGGCCATAGATCA 59.573 61.111 2.24 0.00 44.06 2.92
85 86 2.184830 CCACAGATCATGCCAGCGG 61.185 63.158 0.00 0.00 0.00 5.52
86 87 2.831366 GCCACAGATCATGCCAGCG 61.831 63.158 0.00 0.00 0.00 5.18
87 88 2.487532 GGCCACAGATCATGCCAGC 61.488 63.158 0.00 0.72 43.46 4.85
88 89 2.184830 CGGCCACAGATCATGCCAG 61.185 63.158 2.24 4.76 44.22 4.85
89 90 2.124612 CGGCCACAGATCATGCCA 60.125 61.111 2.24 0.00 44.22 4.92
90 91 3.589881 GCGGCCACAGATCATGCC 61.590 66.667 2.24 0.00 40.54 4.40
91 92 3.945434 CGCGGCCACAGATCATGC 61.945 66.667 2.24 0.00 0.00 4.06
92 93 3.274586 CCGCGGCCACAGATCATG 61.275 66.667 14.67 0.00 0.00 3.07
93 94 4.552365 CCCGCGGCCACAGATCAT 62.552 66.667 22.85 0.00 0.00 2.45
103 104 3.509549 ATTTTTAAAAATGGCCCGCGGC 61.510 45.455 22.85 15.74 38.17 6.53
104 105 1.797025 TTTTTAAAAATGGCCCGCGG 58.203 45.000 21.04 21.04 0.00 6.46
105 106 3.433615 TCAATTTTTAAAAATGGCCCGCG 59.566 39.130 23.34 0.00 38.53 6.46
106 107 4.454161 ACTCAATTTTTAAAAATGGCCCGC 59.546 37.500 23.34 0.00 38.53 6.13
107 108 5.616645 GCACTCAATTTTTAAAAATGGCCCG 60.617 40.000 23.34 14.97 38.53 6.13
108 109 5.616645 CGCACTCAATTTTTAAAAATGGCCC 60.617 40.000 23.34 11.18 38.53 5.80
109 110 5.381477 CGCACTCAATTTTTAAAAATGGCC 58.619 37.500 23.34 0.00 38.53 5.36
110 111 5.178438 TCCGCACTCAATTTTTAAAAATGGC 59.822 36.000 23.34 19.16 38.53 4.40
111 112 6.201806 TGTCCGCACTCAATTTTTAAAAATGG 59.798 34.615 23.34 20.82 38.53 3.16
112 113 7.171447 TGTCCGCACTCAATTTTTAAAAATG 57.829 32.000 23.34 17.35 38.53 2.32
113 114 7.655328 TCATGTCCGCACTCAATTTTTAAAAAT 59.345 29.630 18.40 18.40 40.15 1.82
114 115 6.980978 TCATGTCCGCACTCAATTTTTAAAAA 59.019 30.769 15.38 15.38 0.00 1.94
115 116 6.507900 TCATGTCCGCACTCAATTTTTAAAA 58.492 32.000 0.00 0.00 0.00 1.52
116 117 6.078202 TCATGTCCGCACTCAATTTTTAAA 57.922 33.333 0.00 0.00 0.00 1.52
117 118 5.697473 TCATGTCCGCACTCAATTTTTAA 57.303 34.783 0.00 0.00 0.00 1.52
118 119 5.697473 TTCATGTCCGCACTCAATTTTTA 57.303 34.783 0.00 0.00 0.00 1.52
119 120 4.582701 TTCATGTCCGCACTCAATTTTT 57.417 36.364 0.00 0.00 0.00 1.94
120 121 4.582701 TTTCATGTCCGCACTCAATTTT 57.417 36.364 0.00 0.00 0.00 1.82
121 122 4.789012 ATTTCATGTCCGCACTCAATTT 57.211 36.364 0.00 0.00 0.00 1.82
122 123 4.336433 CCTATTTCATGTCCGCACTCAATT 59.664 41.667 0.00 0.00 0.00 2.32
123 124 3.879295 CCTATTTCATGTCCGCACTCAAT 59.121 43.478 0.00 0.00 0.00 2.57
124 125 3.270027 CCTATTTCATGTCCGCACTCAA 58.730 45.455 0.00 0.00 0.00 3.02
125 126 2.236146 ACCTATTTCATGTCCGCACTCA 59.764 45.455 0.00 0.00 0.00 3.41
126 127 2.866762 GACCTATTTCATGTCCGCACTC 59.133 50.000 0.00 0.00 0.00 3.51
127 128 2.738643 CGACCTATTTCATGTCCGCACT 60.739 50.000 0.00 0.00 0.00 4.40
128 129 1.593006 CGACCTATTTCATGTCCGCAC 59.407 52.381 0.00 0.00 0.00 5.34
129 130 1.472552 CCGACCTATTTCATGTCCGCA 60.473 52.381 0.00 0.00 0.00 5.69
130 131 1.217882 CCGACCTATTTCATGTCCGC 58.782 55.000 0.00 0.00 0.00 5.54
131 132 1.217882 GCCGACCTATTTCATGTCCG 58.782 55.000 0.00 0.00 0.00 4.79
132 133 1.217882 CGCCGACCTATTTCATGTCC 58.782 55.000 0.00 0.00 0.00 4.02
133 134 0.582005 GCGCCGACCTATTTCATGTC 59.418 55.000 0.00 0.00 0.00 3.06
134 135 1.151777 CGCGCCGACCTATTTCATGT 61.152 55.000 0.00 0.00 0.00 3.21
135 136 1.151777 ACGCGCCGACCTATTTCATG 61.152 55.000 5.73 0.00 0.00 3.07
136 137 0.461339 AACGCGCCGACCTATTTCAT 60.461 50.000 5.73 0.00 0.00 2.57
137 138 1.079681 AACGCGCCGACCTATTTCA 60.080 52.632 5.73 0.00 0.00 2.69
138 139 1.347221 CAACGCGCCGACCTATTTC 59.653 57.895 5.73 0.00 0.00 2.17
139 140 2.104253 CCAACGCGCCGACCTATTT 61.104 57.895 5.73 0.00 0.00 1.40
140 141 2.510691 CCAACGCGCCGACCTATT 60.511 61.111 5.73 0.00 0.00 1.73
141 142 4.524318 CCCAACGCGCCGACCTAT 62.524 66.667 5.73 0.00 0.00 2.57
158 159 2.680913 ATTTGAGTCGGCAGTGCGC 61.681 57.895 9.45 0.00 41.28 6.09
159 160 1.133253 CATTTGAGTCGGCAGTGCG 59.867 57.895 9.45 4.79 0.00 5.34
160 161 1.154150 GCATTTGAGTCGGCAGTGC 60.154 57.895 6.55 6.55 0.00 4.40
161 162 0.592637 TTGCATTTGAGTCGGCAGTG 59.407 50.000 0.00 0.00 37.59 3.66
162 163 1.267806 CTTTGCATTTGAGTCGGCAGT 59.732 47.619 0.00 0.00 37.59 4.40
163 164 1.973138 CTTTGCATTTGAGTCGGCAG 58.027 50.000 0.00 0.00 37.59 4.85
164 165 0.039256 GCTTTGCATTTGAGTCGGCA 60.039 50.000 0.00 0.00 0.00 5.69
165 166 0.242017 AGCTTTGCATTTGAGTCGGC 59.758 50.000 0.00 0.00 0.00 5.54
166 167 1.401931 CCAGCTTTGCATTTGAGTCGG 60.402 52.381 0.00 0.00 0.00 4.79
167 168 1.401931 CCCAGCTTTGCATTTGAGTCG 60.402 52.381 0.00 0.00 0.00 4.18
168 169 1.670967 GCCCAGCTTTGCATTTGAGTC 60.671 52.381 0.00 0.00 0.00 3.36
169 170 0.319405 GCCCAGCTTTGCATTTGAGT 59.681 50.000 0.00 0.00 0.00 3.41
170 171 0.734942 CGCCCAGCTTTGCATTTGAG 60.735 55.000 5.18 0.00 0.00 3.02
171 172 1.289694 CGCCCAGCTTTGCATTTGA 59.710 52.632 5.18 0.00 0.00 2.69
172 173 1.738830 CCGCCCAGCTTTGCATTTG 60.739 57.895 5.18 0.00 0.00 2.32
173 174 1.907807 TCCGCCCAGCTTTGCATTT 60.908 52.632 5.18 0.00 0.00 2.32
174 175 2.283101 TCCGCCCAGCTTTGCATT 60.283 55.556 5.18 0.00 0.00 3.56
175 176 3.064324 GTCCGCCCAGCTTTGCAT 61.064 61.111 5.18 0.00 0.00 3.96
204 205 1.531739 TTTGTCCATTTGGGCTCGGC 61.532 55.000 2.43 0.00 41.34 5.54
205 206 0.965439 TTTTGTCCATTTGGGCTCGG 59.035 50.000 2.43 0.00 41.34 4.63
206 207 2.676076 CTTTTTGTCCATTTGGGCTCG 58.324 47.619 2.43 0.00 41.34 5.03
207 208 2.416747 GCTTTTTGTCCATTTGGGCTC 58.583 47.619 2.43 0.00 41.34 4.70
208 209 1.270252 CGCTTTTTGTCCATTTGGGCT 60.270 47.619 2.43 0.00 41.34 5.19
209 210 1.147473 CGCTTTTTGTCCATTTGGGC 58.853 50.000 0.00 0.00 41.09 5.36
210 211 1.342819 TCCGCTTTTTGTCCATTTGGG 59.657 47.619 0.00 0.00 35.41 4.12
211 212 2.810439 TCCGCTTTTTGTCCATTTGG 57.190 45.000 0.00 0.00 0.00 3.28
212 213 6.966435 ATTTATCCGCTTTTTGTCCATTTG 57.034 33.333 0.00 0.00 0.00 2.32
213 214 6.750039 CGTATTTATCCGCTTTTTGTCCATTT 59.250 34.615 0.00 0.00 0.00 2.32
214 215 6.262601 CGTATTTATCCGCTTTTTGTCCATT 58.737 36.000 0.00 0.00 0.00 3.16
215 216 5.732247 GCGTATTTATCCGCTTTTTGTCCAT 60.732 40.000 0.00 0.00 46.08 3.41
216 217 4.437659 GCGTATTTATCCGCTTTTTGTCCA 60.438 41.667 0.00 0.00 46.08 4.02
217 218 4.033019 GCGTATTTATCCGCTTTTTGTCC 58.967 43.478 0.00 0.00 46.08 4.02
226 227 1.611592 CGGACGGCGTATTTATCCGC 61.612 60.000 19.99 2.06 45.13 5.54
227 228 2.427360 CGGACGGCGTATTTATCCG 58.573 57.895 14.74 17.26 45.61 4.18
228 229 1.856802 AACGGACGGCGTATTTATCC 58.143 50.000 14.74 7.96 0.00 2.59
229 230 2.033492 CCAAACGGACGGCGTATTTATC 60.033 50.000 14.74 0.00 0.00 1.75
230 231 1.935199 CCAAACGGACGGCGTATTTAT 59.065 47.619 14.74 0.00 0.00 1.40
231 232 1.357907 CCAAACGGACGGCGTATTTA 58.642 50.000 14.74 0.00 0.00 1.40
232 233 1.300266 CCCAAACGGACGGCGTATTT 61.300 55.000 14.74 11.57 0.00 1.40
233 234 1.742510 CCCAAACGGACGGCGTATT 60.743 57.895 14.74 5.02 0.00 1.89
234 235 2.125431 CCCAAACGGACGGCGTAT 60.125 61.111 14.74 0.00 0.00 3.06
235 236 3.162505 AACCCAAACGGACGGCGTA 62.163 57.895 14.74 0.00 34.64 4.42
236 237 4.550697 AACCCAAACGGACGGCGT 62.551 61.111 14.65 14.65 34.64 5.68
237 238 4.020378 CAACCCAAACGGACGGCG 62.020 66.667 4.80 4.80 34.64 6.46
238 239 3.666253 CCAACCCAAACGGACGGC 61.666 66.667 0.00 0.00 34.64 5.68
239 240 3.666253 GCCAACCCAAACGGACGG 61.666 66.667 0.00 0.00 34.64 4.79
240 241 2.593436 AGCCAACCCAAACGGACG 60.593 61.111 0.00 0.00 34.64 4.79
241 242 3.039134 CAGCCAACCCAAACGGAC 58.961 61.111 0.00 0.00 34.64 4.79
242 243 2.909965 GCAGCCAACCCAAACGGA 60.910 61.111 0.00 0.00 34.64 4.69
243 244 2.912025 AGCAGCCAACCCAAACGG 60.912 61.111 0.00 0.00 37.81 4.44
244 245 1.455383 AAGAGCAGCCAACCCAAACG 61.455 55.000 0.00 0.00 0.00 3.60
245 246 1.541588 CTAAGAGCAGCCAACCCAAAC 59.458 52.381 0.00 0.00 0.00 2.93
246 247 1.144913 ACTAAGAGCAGCCAACCCAAA 59.855 47.619 0.00 0.00 0.00 3.28
247 248 0.771127 ACTAAGAGCAGCCAACCCAA 59.229 50.000 0.00 0.00 0.00 4.12
248 249 0.036732 CACTAAGAGCAGCCAACCCA 59.963 55.000 0.00 0.00 0.00 4.51
249 250 1.308783 GCACTAAGAGCAGCCAACCC 61.309 60.000 0.00 0.00 0.00 4.11
250 251 0.322008 AGCACTAAGAGCAGCCAACC 60.322 55.000 0.00 0.00 0.00 3.77
251 252 2.386661 TAGCACTAAGAGCAGCCAAC 57.613 50.000 0.00 0.00 0.00 3.77
252 253 3.055167 TGATTAGCACTAAGAGCAGCCAA 60.055 43.478 0.00 0.00 0.00 4.52
253 254 2.501316 TGATTAGCACTAAGAGCAGCCA 59.499 45.455 0.00 0.00 0.00 4.75
254 255 2.869192 GTGATTAGCACTAAGAGCAGCC 59.131 50.000 0.00 0.00 44.27 4.85
285 286 3.696281 TTTTGTCTCACACACTGCATG 57.304 42.857 0.00 0.00 33.41 4.06
288 289 3.242870 CCTCTTTTTGTCTCACACACTGC 60.243 47.826 0.00 0.00 33.41 4.40
309 311 2.551071 GCCCTTGTATGTATGAGCCTCC 60.551 54.545 0.00 0.00 0.00 4.30
338 340 7.423844 AAACCAATTTAAGGATGAGATTCCC 57.576 36.000 0.00 0.00 36.35 3.97
355 357 0.598065 GACAGGCGCAGAAAACCAAT 59.402 50.000 10.83 0.00 0.00 3.16
357 359 0.749818 TTGACAGGCGCAGAAAACCA 60.750 50.000 10.83 0.00 0.00 3.67
467 469 1.990614 GGAGGTGGAGGTGGAGGAC 60.991 68.421 0.00 0.00 0.00 3.85
611 638 2.202676 GTCCAGCTTCTCGGCTCG 60.203 66.667 0.00 0.00 41.00 5.03
877 907 2.438021 TCTTGTCTGGGTAACTTGTGCT 59.562 45.455 0.00 0.00 0.00 4.40
887 932 1.270907 AGAGCGATTCTTGTCTGGGT 58.729 50.000 0.00 0.00 29.61 4.51
933 988 4.838152 GATTGGCCGCCGAGCTGA 62.838 66.667 7.72 0.00 0.00 4.26
1408 1463 4.732784 TGTTGCAGAACTTTTGAGAACAC 58.267 39.130 0.00 0.00 32.79 3.32
1410 1465 4.795278 CACTGTTGCAGAACTTTTGAGAAC 59.205 41.667 2.91 0.00 35.18 3.01
1416 1471 3.763897 ACTTCCACTGTTGCAGAACTTTT 59.236 39.130 2.91 0.00 35.18 2.27
1417 1472 3.129287 CACTTCCACTGTTGCAGAACTTT 59.871 43.478 2.91 0.00 35.18 2.66
1439 1494 3.900388 TGATTGCAGCAAAATTTTGGC 57.100 38.095 27.60 23.17 38.57 4.52
1440 1495 5.171147 TGTTGATTGCAGCAAAATTTTGG 57.829 34.783 27.60 15.63 38.57 3.28
1441 1496 8.071368 ACTAATGTTGATTGCAGCAAAATTTTG 58.929 29.630 23.74 23.74 38.75 2.44
1442 1497 8.156994 ACTAATGTTGATTGCAGCAAAATTTT 57.843 26.923 12.97 0.00 38.75 1.82
1443 1498 7.733402 ACTAATGTTGATTGCAGCAAAATTT 57.267 28.000 12.97 0.00 38.75 1.82
1444 1499 8.306038 TCTACTAATGTTGATTGCAGCAAAATT 58.694 29.630 12.97 18.20 38.75 1.82
1446 1501 7.213216 TCTACTAATGTTGATTGCAGCAAAA 57.787 32.000 12.97 0.00 38.75 2.44
1447 1502 6.816134 TCTACTAATGTTGATTGCAGCAAA 57.184 33.333 12.97 0.00 38.75 3.68
1449 1504 5.882000 ACATCTACTAATGTTGATTGCAGCA 59.118 36.000 0.00 0.00 36.47 4.41
1450 1505 6.037500 TGACATCTACTAATGTTGATTGCAGC 59.962 38.462 0.00 0.00 39.93 5.25
1451 1506 7.543947 TGACATCTACTAATGTTGATTGCAG 57.456 36.000 0.00 0.00 39.93 4.41
1452 1507 7.607607 ACTTGACATCTACTAATGTTGATTGCA 59.392 33.333 0.00 0.00 39.93 4.08
1453 1508 7.978982 ACTTGACATCTACTAATGTTGATTGC 58.021 34.615 0.00 0.00 39.93 3.56
1457 1512 9.990360 TGTAAACTTGACATCTACTAATGTTGA 57.010 29.630 0.00 0.00 39.93 3.18
1459 1514 8.922676 CGTGTAAACTTGACATCTACTAATGTT 58.077 33.333 0.00 0.00 39.93 2.71
1460 1515 8.086522 ACGTGTAAACTTGACATCTACTAATGT 58.913 33.333 0.00 0.00 42.49 2.71
1461 1516 8.462143 ACGTGTAAACTTGACATCTACTAATG 57.538 34.615 0.00 0.00 0.00 1.90
1463 1518 9.616634 CTAACGTGTAAACTTGACATCTACTAA 57.383 33.333 0.00 0.00 0.00 2.24
1466 1521 7.717678 CACTAACGTGTAAACTTGACATCTAC 58.282 38.462 0.00 0.00 36.39 2.59
1467 1522 7.862741 CACTAACGTGTAAACTTGACATCTA 57.137 36.000 0.00 0.00 36.39 1.98
1468 1523 6.764877 CACTAACGTGTAAACTTGACATCT 57.235 37.500 0.00 0.00 36.39 2.90
1482 1537 3.554524 CTTGATGGCAAACACTAACGTG 58.445 45.455 0.00 0.00 46.63 4.49
1483 1538 2.031157 GCTTGATGGCAAACACTAACGT 60.031 45.455 0.00 0.00 32.73 3.99
1484 1539 2.226437 AGCTTGATGGCAAACACTAACG 59.774 45.455 0.00 0.00 32.73 3.18
1485 1540 3.923017 AGCTTGATGGCAAACACTAAC 57.077 42.857 0.00 0.00 32.73 2.34
1486 1541 4.651778 AGTAGCTTGATGGCAAACACTAA 58.348 39.130 0.00 0.00 32.73 2.24
1487 1542 4.286297 AGTAGCTTGATGGCAAACACTA 57.714 40.909 0.00 0.00 32.73 2.74
1488 1543 3.146104 AGTAGCTTGATGGCAAACACT 57.854 42.857 0.00 0.00 32.73 3.55
1489 1544 3.923017 AAGTAGCTTGATGGCAAACAC 57.077 42.857 0.00 0.00 32.73 3.32
1490 1545 5.534654 AGTTTAAGTAGCTTGATGGCAAACA 59.465 36.000 0.00 0.00 32.73 2.83
1491 1546 5.858581 CAGTTTAAGTAGCTTGATGGCAAAC 59.141 40.000 0.00 0.00 32.73 2.93
1492 1547 5.564651 GCAGTTTAAGTAGCTTGATGGCAAA 60.565 40.000 0.00 0.00 32.73 3.68
1493 1548 4.082787 GCAGTTTAAGTAGCTTGATGGCAA 60.083 41.667 0.00 0.00 34.17 4.52
1494 1549 3.440173 GCAGTTTAAGTAGCTTGATGGCA 59.560 43.478 0.00 0.00 34.17 4.92
1495 1550 3.691609 AGCAGTTTAAGTAGCTTGATGGC 59.308 43.478 0.00 0.00 32.52 4.40
1496 1551 5.163713 GGAAGCAGTTTAAGTAGCTTGATGG 60.164 44.000 12.98 0.00 46.35 3.51
1497 1552 5.446473 CGGAAGCAGTTTAAGTAGCTTGATG 60.446 44.000 12.98 2.48 46.35 3.07
1498 1553 4.631813 CGGAAGCAGTTTAAGTAGCTTGAT 59.368 41.667 12.98 0.00 46.35 2.57
1499 1554 3.994392 CGGAAGCAGTTTAAGTAGCTTGA 59.006 43.478 12.98 0.00 46.35 3.02
1500 1555 3.746492 ACGGAAGCAGTTTAAGTAGCTTG 59.254 43.478 12.98 5.02 46.35 4.01
1502 1557 3.244112 ACACGGAAGCAGTTTAAGTAGCT 60.244 43.478 0.00 0.00 39.37 3.32
1503 1558 3.064931 ACACGGAAGCAGTTTAAGTAGC 58.935 45.455 0.00 0.00 0.00 3.58
1504 1559 5.007332 ACAAACACGGAAGCAGTTTAAGTAG 59.993 40.000 0.00 0.00 39.57 2.57
1505 1560 4.877251 ACAAACACGGAAGCAGTTTAAGTA 59.123 37.500 0.00 0.00 39.57 2.24
1577 1635 5.133221 ACTGTCAGCAACCATTTTAGAACT 58.867 37.500 0.00 0.00 0.00 3.01
1580 1638 4.713553 TGACTGTCAGCAACCATTTTAGA 58.286 39.130 6.36 0.00 0.00 2.10
1693 1794 2.172372 GCTCAGTGCAGGCTGATCG 61.172 63.158 20.86 2.85 43.61 3.69
1890 1991 4.260907 CGGATTGCACAATTATCAGGACAG 60.261 45.833 0.00 0.00 0.00 3.51
1951 2052 3.920412 GCTTCTTTGTTGCCGATTTTAGG 59.080 43.478 0.00 0.00 0.00 2.69
1963 2064 3.882888 TGTTCTTCCGATGCTTCTTTGTT 59.117 39.130 0.00 0.00 0.00 2.83
2149 2250 6.844696 TCTACTGAAACAAACACTGATGAC 57.155 37.500 0.00 0.00 0.00 3.06
2164 2265 2.497675 GGTCTGCCACTCATCTACTGAA 59.502 50.000 0.00 0.00 31.52 3.02
2383 2484 0.620556 GGAGGATGTTCTTCTGGCCA 59.379 55.000 4.71 4.71 0.00 5.36
2452 2553 1.072015 GAGCCTCCTTCCATCATCCTG 59.928 57.143 0.00 0.00 0.00 3.86
2467 2568 3.928005 ATGATGTCATGAACTGAGCCT 57.072 42.857 0.00 0.00 34.83 4.58
2507 2608 4.351938 CGTGTCCCGGAGCGACAA 62.352 66.667 12.82 0.00 41.70 3.18
2527 2628 1.596727 GCGACATCAAGAGCAATCCTC 59.403 52.381 0.00 0.00 41.07 3.71
2695 2796 0.955178 AGCGATACCCAGATGTCTCG 59.045 55.000 0.00 0.00 37.74 4.04
2866 2989 1.131504 TGTTTCATCGTTAATGCCGCC 59.868 47.619 0.00 0.00 35.17 6.13
2940 3064 6.818354 GCAAGATGATGCAGTGTTCTACACA 61.818 44.000 12.03 0.00 45.53 3.72
3018 3148 3.565482 TCAAGTTGGTCAGATCAAAGCAC 59.435 43.478 0.00 0.00 0.00 4.40
3089 3222 3.458044 TCCTGACTACTGAGTGGACAT 57.542 47.619 2.02 0.00 35.45 3.06
3113 3247 6.894735 TGGTTTATCAGGGTTACAAGGATA 57.105 37.500 0.00 0.00 0.00 2.59
3156 3290 9.566432 AATAGAATGTCCAAGGATGATAAAGAC 57.434 33.333 0.00 0.00 0.00 3.01
3201 3335 6.328641 TCTCAGTAAGGACAAGTTCAGTAC 57.671 41.667 0.00 0.00 0.00 2.73
3312 3449 2.122768 ACCATCTCCCAGAGAACCATC 58.877 52.381 0.00 0.00 42.27 3.51
3700 3846 2.876892 GCATTGGGCAAGAAAAGGCAAT 60.877 45.455 0.00 0.00 43.97 3.56
3756 3906 4.387026 TTTTTCATCTCACCCACTCCAT 57.613 40.909 0.00 0.00 0.00 3.41
3758 3908 4.335416 TGATTTTTCATCTCACCCACTCC 58.665 43.478 0.00 0.00 0.00 3.85
3764 3920 6.183360 GCTCTCTCTTGATTTTTCATCTCACC 60.183 42.308 0.00 0.00 0.00 4.02
3803 3959 4.827835 TCCTTTGTCCTATAGATCCGTCTG 59.172 45.833 0.00 0.00 35.87 3.51
3804 3960 4.828387 GTCCTTTGTCCTATAGATCCGTCT 59.172 45.833 0.00 0.00 38.52 4.18
3845 4007 3.981212 TGCGGATGATAGGATATGGAGA 58.019 45.455 0.00 0.00 0.00 3.71
3850 4017 4.220821 AGTTCGTTGCGGATGATAGGATAT 59.779 41.667 0.00 0.00 0.00 1.63
3864 4031 1.597663 ACTGTGCAGTTAGTTCGTTGC 59.402 47.619 0.00 0.00 38.83 4.17
3952 4128 5.289595 GGGTCAAACAAAACAAAGGAGATC 58.710 41.667 0.00 0.00 0.00 2.75
4033 4256 2.505819 ACGATCCAAGGGCTGATTAGTT 59.494 45.455 0.00 0.00 0.00 2.24
4034 4257 2.119495 ACGATCCAAGGGCTGATTAGT 58.881 47.619 0.00 0.00 0.00 2.24
4035 4258 2.918712 ACGATCCAAGGGCTGATTAG 57.081 50.000 0.00 0.00 0.00 1.73
4036 4259 3.541632 GAAACGATCCAAGGGCTGATTA 58.458 45.455 0.00 0.00 0.00 1.75
4039 4262 3.551259 GAAACGATCCAAGGGCTGA 57.449 52.632 0.00 0.00 0.00 4.26
4094 4317 3.278574 ACTACCGCACATGCATTACATT 58.721 40.909 0.00 0.00 42.21 2.71
4095 4318 2.917933 ACTACCGCACATGCATTACAT 58.082 42.857 0.00 0.00 42.21 2.29
4096 4319 2.394930 ACTACCGCACATGCATTACA 57.605 45.000 0.00 0.00 42.21 2.41
4097 4320 2.031683 GGAACTACCGCACATGCATTAC 59.968 50.000 0.00 0.00 42.21 1.89
4098 4321 2.093181 AGGAACTACCGCACATGCATTA 60.093 45.455 0.00 0.00 44.74 1.90
4229 4459 5.799213 AGGTTCTACATTCTCAACAAGAGG 58.201 41.667 0.00 0.00 44.81 3.69
4231 4461 6.387465 CGTAGGTTCTACATTCTCAACAAGA 58.613 40.000 6.00 0.00 0.00 3.02
4232 4462 5.062308 GCGTAGGTTCTACATTCTCAACAAG 59.938 44.000 6.00 0.00 0.00 3.16
4233 4463 4.927425 GCGTAGGTTCTACATTCTCAACAA 59.073 41.667 6.00 0.00 0.00 2.83
4235 4465 4.563184 CAGCGTAGGTTCTACATTCTCAAC 59.437 45.833 6.00 0.00 33.74 3.18
4236 4466 4.744570 CAGCGTAGGTTCTACATTCTCAA 58.255 43.478 6.00 0.00 33.74 3.02
4237 4467 3.428999 GCAGCGTAGGTTCTACATTCTCA 60.429 47.826 6.00 0.00 33.74 3.27
4238 4468 3.117046 GCAGCGTAGGTTCTACATTCTC 58.883 50.000 6.00 0.00 33.74 2.87
4239 4469 2.496070 TGCAGCGTAGGTTCTACATTCT 59.504 45.455 6.00 0.00 33.74 2.40
4240 4470 2.888594 TGCAGCGTAGGTTCTACATTC 58.111 47.619 6.00 0.00 33.74 2.67
4241 4471 3.133003 AGATGCAGCGTAGGTTCTACATT 59.867 43.478 0.00 0.00 33.74 2.71
4242 4472 2.695666 AGATGCAGCGTAGGTTCTACAT 59.304 45.455 0.00 0.00 33.74 2.29
4243 4473 2.100197 AGATGCAGCGTAGGTTCTACA 58.900 47.619 0.00 0.00 33.74 2.74
4244 4474 2.873133 AGATGCAGCGTAGGTTCTAC 57.127 50.000 0.00 0.00 33.74 2.59
4245 4475 3.697542 TGTAAGATGCAGCGTAGGTTCTA 59.302 43.478 0.00 0.00 33.74 2.10
4246 4476 2.496070 TGTAAGATGCAGCGTAGGTTCT 59.504 45.455 0.00 0.00 33.74 3.01
4247 4477 2.888594 TGTAAGATGCAGCGTAGGTTC 58.111 47.619 0.00 0.00 33.74 3.62
4248 4478 3.198068 CATGTAAGATGCAGCGTAGGTT 58.802 45.455 0.00 0.00 33.74 3.50
4249 4479 2.483714 CCATGTAAGATGCAGCGTAGGT 60.484 50.000 0.00 0.00 41.48 3.08
4250 4480 2.138320 CCATGTAAGATGCAGCGTAGG 58.862 52.381 0.00 0.00 0.00 3.18
4251 4481 3.097877 TCCATGTAAGATGCAGCGTAG 57.902 47.619 0.00 0.00 0.00 3.51
4252 4482 3.751479 ATCCATGTAAGATGCAGCGTA 57.249 42.857 0.00 0.00 0.00 4.42
4253 4483 2.627515 ATCCATGTAAGATGCAGCGT 57.372 45.000 0.00 0.00 0.00 5.07
4254 4484 2.225019 GGAATCCATGTAAGATGCAGCG 59.775 50.000 0.00 0.00 0.00 5.18
4255 4485 3.484407 AGGAATCCATGTAAGATGCAGC 58.516 45.455 0.61 0.00 0.00 5.25
4256 4486 4.277672 CCAAGGAATCCATGTAAGATGCAG 59.722 45.833 0.61 0.00 0.00 4.41
4257 4487 4.079844 TCCAAGGAATCCATGTAAGATGCA 60.080 41.667 0.61 0.00 0.00 3.96
4258 4488 4.464008 TCCAAGGAATCCATGTAAGATGC 58.536 43.478 0.61 0.00 0.00 3.91
4271 4501 1.925255 TCAGCCTGGATTCCAAGGAAT 59.075 47.619 13.93 13.93 46.29 3.01
4272 4502 1.371467 TCAGCCTGGATTCCAAGGAA 58.629 50.000 19.49 3.67 38.59 3.36
4273 4503 1.600058 ATCAGCCTGGATTCCAAGGA 58.400 50.000 19.49 10.20 30.80 3.36
4274 4504 3.803186 ATATCAGCCTGGATTCCAAGG 57.197 47.619 6.88 11.11 30.80 3.61
4275 4505 5.006386 GGTTATATCAGCCTGGATTCCAAG 58.994 45.833 6.88 1.45 30.80 3.61
4276 4506 4.665009 AGGTTATATCAGCCTGGATTCCAA 59.335 41.667 6.88 0.00 36.31 3.53
4277 4507 4.242811 AGGTTATATCAGCCTGGATTCCA 58.757 43.478 5.05 5.05 36.31 3.53
4278 4508 4.917906 AGGTTATATCAGCCTGGATTCC 57.082 45.455 0.00 0.00 36.31 3.01
4279 4509 7.588497 AAAAAGGTTATATCAGCCTGGATTC 57.412 36.000 0.00 0.00 38.02 2.52
4338 4568 9.624697 GTTGCACTGTCATGATTAAAAGATTAA 57.375 29.630 0.00 0.00 35.57 1.40
4339 4569 7.962373 CGTTGCACTGTCATGATTAAAAGATTA 59.038 33.333 0.00 0.00 0.00 1.75
4340 4570 6.803320 CGTTGCACTGTCATGATTAAAAGATT 59.197 34.615 0.00 0.00 0.00 2.40
4341 4571 6.149308 TCGTTGCACTGTCATGATTAAAAGAT 59.851 34.615 0.00 0.00 0.00 2.40
4342 4572 5.468409 TCGTTGCACTGTCATGATTAAAAGA 59.532 36.000 0.00 0.00 0.00 2.52
4343 4573 5.688823 TCGTTGCACTGTCATGATTAAAAG 58.311 37.500 0.00 0.00 0.00 2.27
4344 4574 5.681337 TCGTTGCACTGTCATGATTAAAA 57.319 34.783 0.00 0.00 0.00 1.52
4345 4575 5.448438 GTTCGTTGCACTGTCATGATTAAA 58.552 37.500 0.00 0.00 0.00 1.52
4346 4576 4.083537 GGTTCGTTGCACTGTCATGATTAA 60.084 41.667 0.00 0.00 0.00 1.40
4347 4577 3.435327 GGTTCGTTGCACTGTCATGATTA 59.565 43.478 0.00 0.00 0.00 1.75
4348 4578 2.226437 GGTTCGTTGCACTGTCATGATT 59.774 45.455 0.00 0.00 0.00 2.57
4349 4579 1.806542 GGTTCGTTGCACTGTCATGAT 59.193 47.619 0.00 0.00 0.00 2.45
4350 4580 1.225855 GGTTCGTTGCACTGTCATGA 58.774 50.000 0.00 0.00 0.00 3.07
4351 4581 0.238289 GGGTTCGTTGCACTGTCATG 59.762 55.000 0.00 0.00 0.00 3.07
4352 4582 0.179032 TGGGTTCGTTGCACTGTCAT 60.179 50.000 0.00 0.00 0.00 3.06
4353 4583 0.179032 ATGGGTTCGTTGCACTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
4354 4584 1.803334 TATGGGTTCGTTGCACTGTC 58.197 50.000 0.00 0.00 0.00 3.51
4355 4585 2.264005 TTATGGGTTCGTTGCACTGT 57.736 45.000 0.00 0.00 0.00 3.55
4356 4586 3.848272 ATTTATGGGTTCGTTGCACTG 57.152 42.857 0.00 0.00 0.00 3.66
4357 4587 7.633193 TTATTATTTATGGGTTCGTTGCACT 57.367 32.000 0.00 0.00 0.00 4.40
4358 4588 8.690680 TTTTATTATTTATGGGTTCGTTGCAC 57.309 30.769 0.00 0.00 0.00 4.57
4359 4589 9.877178 ATTTTTATTATTTATGGGTTCGTTGCA 57.123 25.926 0.00 0.00 0.00 4.08
4379 4609 9.793259 GGTCTATGGATCTGGATGTAATTTTTA 57.207 33.333 0.00 0.00 0.00 1.52
4380 4610 8.281531 TGGTCTATGGATCTGGATGTAATTTTT 58.718 33.333 0.00 0.00 0.00 1.94
4381 4611 7.721399 GTGGTCTATGGATCTGGATGTAATTTT 59.279 37.037 0.00 0.00 0.00 1.82
4382 4612 7.227156 GTGGTCTATGGATCTGGATGTAATTT 58.773 38.462 0.00 0.00 0.00 1.82
4383 4613 6.240002 GGTGGTCTATGGATCTGGATGTAATT 60.240 42.308 0.00 0.00 0.00 1.40
4384 4614 5.249393 GGTGGTCTATGGATCTGGATGTAAT 59.751 44.000 0.00 0.00 0.00 1.89
4385 4615 4.593206 GGTGGTCTATGGATCTGGATGTAA 59.407 45.833 0.00 0.00 0.00 2.41
4386 4616 4.160329 GGTGGTCTATGGATCTGGATGTA 58.840 47.826 0.00 0.00 0.00 2.29
4387 4617 2.975489 GGTGGTCTATGGATCTGGATGT 59.025 50.000 0.00 0.00 0.00 3.06
4388 4618 2.028658 CGGTGGTCTATGGATCTGGATG 60.029 54.545 0.00 0.00 0.00 3.51
4389 4619 2.158310 TCGGTGGTCTATGGATCTGGAT 60.158 50.000 0.00 0.00 0.00 3.41
4390 4620 1.216930 TCGGTGGTCTATGGATCTGGA 59.783 52.381 0.00 0.00 0.00 3.86
4391 4621 1.615883 CTCGGTGGTCTATGGATCTGG 59.384 57.143 0.00 0.00 0.00 3.86
4392 4622 1.000283 GCTCGGTGGTCTATGGATCTG 60.000 57.143 0.00 0.00 0.00 2.90
4393 4623 1.333177 GCTCGGTGGTCTATGGATCT 58.667 55.000 0.00 0.00 0.00 2.75
4394 4624 0.039074 CGCTCGGTGGTCTATGGATC 60.039 60.000 0.00 0.00 0.00 3.36
4395 4625 0.467474 TCGCTCGGTGGTCTATGGAT 60.467 55.000 0.00 0.00 0.00 3.41
4396 4626 1.077285 TCGCTCGGTGGTCTATGGA 60.077 57.895 0.00 0.00 0.00 3.41
4397 4627 1.065928 GTCGCTCGGTGGTCTATGG 59.934 63.158 0.00 0.00 0.00 2.74
4398 4628 1.298413 CGTCGCTCGGTGGTCTATG 60.298 63.158 0.00 0.00 35.71 2.23
4399 4629 1.437772 CTCGTCGCTCGGTGGTCTAT 61.438 60.000 0.00 0.00 40.32 1.98
4400 4630 2.046988 TCGTCGCTCGGTGGTCTA 60.047 61.111 0.00 0.00 40.32 2.59
4401 4631 2.793160 TACTCGTCGCTCGGTGGTCT 62.793 60.000 0.00 0.00 40.32 3.85
4402 4632 2.393768 TACTCGTCGCTCGGTGGTC 61.394 63.158 0.00 0.00 40.32 4.02
4403 4633 2.359107 TACTCGTCGCTCGGTGGT 60.359 61.111 0.00 0.00 40.32 4.16
4404 4634 2.099831 GTACTCGTCGCTCGGTGG 59.900 66.667 0.00 0.00 40.32 4.61
4405 4635 0.386352 TTTGTACTCGTCGCTCGGTG 60.386 55.000 0.00 0.00 40.32 4.94
4406 4636 0.386478 GTTTGTACTCGTCGCTCGGT 60.386 55.000 0.00 1.28 40.32 4.69
4407 4637 0.386352 TGTTTGTACTCGTCGCTCGG 60.386 55.000 0.00 0.00 40.32 4.63
4408 4638 0.701303 GTGTTTGTACTCGTCGCTCG 59.299 55.000 0.00 0.00 41.41 5.03
4409 4639 2.047679 AGTGTTTGTACTCGTCGCTC 57.952 50.000 0.00 0.00 0.00 5.03
4410 4640 3.631145 TTAGTGTTTGTACTCGTCGCT 57.369 42.857 0.00 0.00 32.19 4.93
4411 4641 3.421440 GCTTTAGTGTTTGTACTCGTCGC 60.421 47.826 0.00 0.00 32.19 5.19
4412 4642 3.181556 CGCTTTAGTGTTTGTACTCGTCG 60.182 47.826 0.00 0.00 32.19 5.12
4413 4643 3.976942 TCGCTTTAGTGTTTGTACTCGTC 59.023 43.478 0.00 0.00 32.19 4.20
4414 4644 3.968649 TCGCTTTAGTGTTTGTACTCGT 58.031 40.909 0.00 0.00 32.19 4.18
4415 4645 3.181543 GCTCGCTTTAGTGTTTGTACTCG 60.182 47.826 0.00 0.00 32.19 4.18
4416 4646 3.123116 GGCTCGCTTTAGTGTTTGTACTC 59.877 47.826 0.00 0.00 32.19 2.59
4417 4647 3.064931 GGCTCGCTTTAGTGTTTGTACT 58.935 45.455 0.00 0.00 34.71 2.73
4418 4648 2.159037 GGGCTCGCTTTAGTGTTTGTAC 59.841 50.000 0.00 0.00 0.00 2.90
4419 4649 2.224329 TGGGCTCGCTTTAGTGTTTGTA 60.224 45.455 0.00 0.00 0.00 2.41
4420 4650 1.235724 GGGCTCGCTTTAGTGTTTGT 58.764 50.000 0.00 0.00 0.00 2.83
4421 4651 1.234821 TGGGCTCGCTTTAGTGTTTG 58.765 50.000 0.00 0.00 0.00 2.93
4422 4652 1.880027 CTTGGGCTCGCTTTAGTGTTT 59.120 47.619 0.00 0.00 0.00 2.83
4423 4653 1.523758 CTTGGGCTCGCTTTAGTGTT 58.476 50.000 0.00 0.00 0.00 3.32
4424 4654 0.321653 CCTTGGGCTCGCTTTAGTGT 60.322 55.000 0.00 0.00 0.00 3.55
4425 4655 1.648467 GCCTTGGGCTCGCTTTAGTG 61.648 60.000 0.80 0.00 46.69 2.74
4426 4656 1.377333 GCCTTGGGCTCGCTTTAGT 60.377 57.895 0.80 0.00 46.69 2.24
4427 4657 3.502572 GCCTTGGGCTCGCTTTAG 58.497 61.111 0.80 0.00 46.69 1.85
4455 4685 4.883354 GGCGAGGGAGGGGCAATG 62.883 72.222 0.00 0.00 0.00 2.82
4472 4702 0.604511 ACAAGTTTTACCCGGCTCCG 60.605 55.000 0.00 0.48 39.44 4.63
4473 4703 1.268625 CAACAAGTTTTACCCGGCTCC 59.731 52.381 0.00 0.00 0.00 4.70
4474 4704 1.951602 ACAACAAGTTTTACCCGGCTC 59.048 47.619 0.00 0.00 0.00 4.70
4475 4705 2.061509 ACAACAAGTTTTACCCGGCT 57.938 45.000 0.00 0.00 0.00 5.52
4476 4706 2.159212 ACAACAACAAGTTTTACCCGGC 60.159 45.455 0.00 0.00 38.74 6.13
4477 4707 3.786516 ACAACAACAAGTTTTACCCGG 57.213 42.857 0.00 0.00 38.74 5.73
4478 4708 5.738118 TCTACAACAACAAGTTTTACCCG 57.262 39.130 0.00 0.00 38.74 5.28
4479 4709 8.387190 ACTATCTACAACAACAAGTTTTACCC 57.613 34.615 0.00 0.00 38.74 3.69
4480 4710 8.501580 GGACTATCTACAACAACAAGTTTTACC 58.498 37.037 0.00 0.00 38.74 2.85
4481 4711 8.219105 CGGACTATCTACAACAACAAGTTTTAC 58.781 37.037 0.00 0.00 38.74 2.01
4482 4712 7.385752 CCGGACTATCTACAACAACAAGTTTTA 59.614 37.037 0.00 0.00 38.74 1.52
4483 4713 6.204108 CCGGACTATCTACAACAACAAGTTTT 59.796 38.462 0.00 0.00 38.74 2.43
4484 4714 5.699458 CCGGACTATCTACAACAACAAGTTT 59.301 40.000 0.00 0.00 38.74 2.66
4485 4715 5.011329 TCCGGACTATCTACAACAACAAGTT 59.989 40.000 0.00 0.00 42.42 2.66
4486 4716 4.525487 TCCGGACTATCTACAACAACAAGT 59.475 41.667 0.00 0.00 0.00 3.16
4487 4717 5.068234 TCCGGACTATCTACAACAACAAG 57.932 43.478 0.00 0.00 0.00 3.16
4488 4718 5.011329 ACTTCCGGACTATCTACAACAACAA 59.989 40.000 1.83 0.00 0.00 2.83
4489 4719 4.525487 ACTTCCGGACTATCTACAACAACA 59.475 41.667 1.83 0.00 0.00 3.33
4490 4720 5.069501 ACTTCCGGACTATCTACAACAAC 57.930 43.478 1.83 0.00 0.00 3.32
4491 4721 4.142534 CGACTTCCGGACTATCTACAACAA 60.143 45.833 1.83 0.00 33.91 2.83
4492 4722 3.376234 CGACTTCCGGACTATCTACAACA 59.624 47.826 1.83 0.00 33.91 3.33
4493 4723 3.376546 ACGACTTCCGGACTATCTACAAC 59.623 47.826 1.83 0.00 43.93 3.32
4494 4724 3.614092 ACGACTTCCGGACTATCTACAA 58.386 45.455 1.83 0.00 43.93 2.41
4495 4725 3.272574 ACGACTTCCGGACTATCTACA 57.727 47.619 1.83 0.00 43.93 2.74
4496 4726 3.376546 ACAACGACTTCCGGACTATCTAC 59.623 47.826 1.83 0.00 43.93 2.59
4497 4727 3.376234 CACAACGACTTCCGGACTATCTA 59.624 47.826 1.83 0.00 43.93 1.98
4498 4728 2.163815 CACAACGACTTCCGGACTATCT 59.836 50.000 1.83 0.00 43.93 1.98
4499 4729 2.527100 CACAACGACTTCCGGACTATC 58.473 52.381 1.83 0.40 43.93 2.08
4500 4730 1.403780 GCACAACGACTTCCGGACTAT 60.404 52.381 1.83 0.00 43.93 2.12
4501 4731 0.038892 GCACAACGACTTCCGGACTA 60.039 55.000 1.83 0.00 43.93 2.59
4502 4732 1.300697 GCACAACGACTTCCGGACT 60.301 57.895 1.83 0.00 43.93 3.85
4503 4733 0.038892 TAGCACAACGACTTCCGGAC 60.039 55.000 1.83 0.00 43.93 4.79
4504 4734 0.675083 TTAGCACAACGACTTCCGGA 59.325 50.000 0.00 0.00 43.93 5.14
4505 4735 1.068474 CTTAGCACAACGACTTCCGG 58.932 55.000 0.00 0.00 43.93 5.14
4506 4736 1.068474 CCTTAGCACAACGACTTCCG 58.932 55.000 0.00 0.00 45.44 4.30
4507 4737 0.796927 GCCTTAGCACAACGACTTCC 59.203 55.000 0.00 0.00 39.53 3.46
4508 4738 0.796927 GGCCTTAGCACAACGACTTC 59.203 55.000 0.00 0.00 42.56 3.01
4509 4739 0.605589 GGGCCTTAGCACAACGACTT 60.606 55.000 0.84 0.00 44.19 3.01
4510 4740 1.003718 GGGCCTTAGCACAACGACT 60.004 57.895 0.84 0.00 44.19 4.18
4511 4741 3.574780 GGGCCTTAGCACAACGAC 58.425 61.111 0.84 0.00 44.19 4.34
4517 4747 4.796495 CCCGTGGGGCCTTAGCAC 62.796 72.222 0.84 1.48 43.97 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.