Multiple sequence alignment - TraesCS4D01G192800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G192800 chr4D 100.000 3459 0 0 1 3459 335900043 335896585 0.000000e+00 6388.0
1 TraesCS4D01G192800 chr4D 85.636 550 64 11 59 600 192974289 192974831 6.480000e-157 564.0
2 TraesCS4D01G192800 chr4D 83.546 626 73 16 59 659 180028971 180029591 3.020000e-155 558.0
3 TraesCS4D01G192800 chr4D 93.651 126 8 0 75 200 492280557 492280432 4.560000e-44 189.0
4 TraesCS4D01G192800 chr4D 91.071 112 10 0 501 612 124711708 124711819 5.980000e-33 152.0
5 TraesCS4D01G192800 chr4A 91.919 2809 132 24 689 3459 137164064 137166815 0.000000e+00 3842.0
6 TraesCS4D01G192800 chr4B 92.448 2410 82 31 689 3022 413876317 413873932 0.000000e+00 3350.0
7 TraesCS4D01G192800 chr4B 90.000 60 6 0 1 60 285844759 285844700 1.030000e-10 78.7
8 TraesCS4D01G192800 chr1D 83.360 625 69 20 59 656 90299114 90299730 2.350000e-151 545.0
9 TraesCS4D01G192800 chr1D 91.071 112 10 0 504 615 198418529 198418418 5.980000e-33 152.0
10 TraesCS4D01G192800 chr3D 89.329 328 32 3 180 504 490460320 490460647 3.210000e-110 409.0
11 TraesCS4D01G192800 chr3D 89.058 329 32 4 180 504 557958377 557958049 4.160000e-109 405.0
12 TraesCS4D01G192800 chr3D 81.395 172 19 2 501 659 183958964 183959135 1.010000e-25 128.0
13 TraesCS4D01G192800 chr3D 93.548 62 4 0 1 62 11797575 11797514 3.680000e-15 93.5
14 TraesCS4D01G192800 chr3D 93.333 60 4 0 1 60 48441019 48440960 4.750000e-14 89.8
15 TraesCS4D01G192800 chr5A 89.024 328 33 3 179 503 85352409 85352736 1.500000e-108 403.0
16 TraesCS4D01G192800 chr1B 88.393 336 33 6 175 506 640026967 640027300 1.930000e-107 399.0
17 TraesCS4D01G192800 chr1B 96.522 115 4 0 70 184 685229532 685229418 1.270000e-44 191.0
18 TraesCS4D01G192800 chr1B 91.803 61 5 0 1 61 277427088 277427148 6.150000e-13 86.1
19 TraesCS4D01G192800 chr6D 87.683 341 38 4 175 511 57182120 57181780 9.000000e-106 394.0
20 TraesCS4D01G192800 chr6D 88.462 156 18 0 504 659 22968359 22968204 4.560000e-44 189.0
21 TraesCS4D01G192800 chr2D 84.264 394 55 5 179 568 155618153 155617763 9.060000e-101 377.0
22 TraesCS4D01G192800 chr2D 92.593 54 4 0 1 54 51726232 51726179 1.030000e-10 78.7
23 TraesCS4D01G192800 chr2D 87.719 57 6 1 606 661 170608111 170608167 8.010000e-07 65.8
24 TraesCS4D01G192800 chr2B 95.161 124 5 1 61 184 481660150 481660028 9.800000e-46 195.0
25 TraesCS4D01G192800 chr2B 83.019 159 23 4 501 659 177780344 177780498 1.290000e-29 141.0
26 TraesCS4D01G192800 chr2B 92.308 52 4 0 606 657 651862468 651862417 1.330000e-09 75.0
27 TraesCS4D01G192800 chr5B 96.522 115 4 0 70 184 577366067 577365953 1.270000e-44 191.0
28 TraesCS4D01G192800 chr1A 96.491 114 4 0 71 184 252325440 252325327 4.560000e-44 189.0
29 TraesCS4D01G192800 chrUn 95.690 116 4 1 66 181 47459746 47459860 5.900000e-43 185.0
30 TraesCS4D01G192800 chr6B 84.118 170 13 4 501 657 720771509 720771677 5.980000e-33 152.0
31 TraesCS4D01G192800 chr6A 93.443 61 4 0 1 61 234195087 234195147 1.320000e-14 91.6
32 TraesCS4D01G192800 chr7B 77.241 145 29 4 1468 1610 92063163 92063021 7.960000e-12 82.4
33 TraesCS4D01G192800 chr7B 90.741 54 5 0 606 659 269800919 269800866 4.790000e-09 73.1
34 TraesCS4D01G192800 chr3B 92.308 52 4 0 606 657 36545493 36545442 1.330000e-09 75.0
35 TraesCS4D01G192800 chr3B 90.741 54 5 0 1 54 331070838 331070891 4.790000e-09 73.1
36 TraesCS4D01G192800 chr3B 92.157 51 4 0 606 656 703297984 703297934 4.790000e-09 73.1
37 TraesCS4D01G192800 chr3B 88.889 54 6 0 606 659 719722334 719722387 2.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G192800 chr4D 335896585 335900043 3458 True 6388 6388 100.000 1 3459 1 chr4D.!!$R1 3458
1 TraesCS4D01G192800 chr4D 192974289 192974831 542 False 564 564 85.636 59 600 1 chr4D.!!$F3 541
2 TraesCS4D01G192800 chr4D 180028971 180029591 620 False 558 558 83.546 59 659 1 chr4D.!!$F2 600
3 TraesCS4D01G192800 chr4A 137164064 137166815 2751 False 3842 3842 91.919 689 3459 1 chr4A.!!$F1 2770
4 TraesCS4D01G192800 chr4B 413873932 413876317 2385 True 3350 3350 92.448 689 3022 1 chr4B.!!$R2 2333
5 TraesCS4D01G192800 chr1D 90299114 90299730 616 False 545 545 83.360 59 656 1 chr1D.!!$F1 597


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 699 0.035439 ACCAGCCTAACCATCCAACG 60.035 55.0 0.0 0.0 0.0 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2519 2609 0.094216 CTCGTCGAAGCAATGCACAG 59.906 55.0 8.35 0.0 0.0 3.66 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.875316 GGAAACCTAAAATTTTGAGAGAAGC 57.125 36.000 13.76 0.00 0.00 3.86
35 36 6.868864 GGAAACCTAAAATTTTGAGAGAAGCC 59.131 38.462 13.76 2.48 0.00 4.35
36 37 5.984695 ACCTAAAATTTTGAGAGAAGCCC 57.015 39.130 13.76 0.00 0.00 5.19
37 38 5.645201 ACCTAAAATTTTGAGAGAAGCCCT 58.355 37.500 13.76 0.00 0.00 5.19
38 39 6.790319 ACCTAAAATTTTGAGAGAAGCCCTA 58.210 36.000 13.76 0.00 0.00 3.53
39 40 7.414266 ACCTAAAATTTTGAGAGAAGCCCTAT 58.586 34.615 13.76 0.00 0.00 2.57
40 41 8.557450 ACCTAAAATTTTGAGAGAAGCCCTATA 58.443 33.333 13.76 0.00 0.00 1.31
41 42 9.408648 CCTAAAATTTTGAGAGAAGCCCTATAA 57.591 33.333 13.76 0.00 0.00 0.98
44 45 7.646548 AATTTTGAGAGAAGCCCTATAAACC 57.353 36.000 0.00 0.00 0.00 3.27
45 46 4.402056 TTGAGAGAAGCCCTATAAACCG 57.598 45.455 0.00 0.00 0.00 4.44
46 47 3.638860 TGAGAGAAGCCCTATAAACCGA 58.361 45.455 0.00 0.00 0.00 4.69
47 48 4.028131 TGAGAGAAGCCCTATAAACCGAA 58.972 43.478 0.00 0.00 0.00 4.30
48 49 4.468510 TGAGAGAAGCCCTATAAACCGAAA 59.531 41.667 0.00 0.00 0.00 3.46
49 50 5.046159 TGAGAGAAGCCCTATAAACCGAAAA 60.046 40.000 0.00 0.00 0.00 2.29
50 51 5.429130 AGAGAAGCCCTATAAACCGAAAAG 58.571 41.667 0.00 0.00 0.00 2.27
52 53 4.226620 AGAAGCCCTATAAACCGAAAAGGA 59.773 41.667 0.00 0.00 45.00 3.36
53 54 4.152284 AGCCCTATAAACCGAAAAGGAG 57.848 45.455 0.00 0.00 45.00 3.69
54 55 3.778629 AGCCCTATAAACCGAAAAGGAGA 59.221 43.478 0.00 0.00 45.00 3.71
55 56 4.226620 AGCCCTATAAACCGAAAAGGAGAA 59.773 41.667 0.00 0.00 45.00 2.87
56 57 4.945543 GCCCTATAAACCGAAAAGGAGAAA 59.054 41.667 0.00 0.00 45.00 2.52
57 58 5.066117 GCCCTATAAACCGAAAAGGAGAAAG 59.934 44.000 0.00 0.00 45.00 2.62
64 65 6.954487 AACCGAAAAGGAGAAAGTATTGTT 57.046 33.333 0.00 0.00 45.00 2.83
68 70 7.041303 ACCGAAAAGGAGAAAGTATTGTTCTTC 60.041 37.037 0.00 0.00 45.00 2.87
69 71 7.173390 CCGAAAAGGAGAAAGTATTGTTCTTCT 59.827 37.037 0.00 0.00 41.84 2.85
70 72 8.224437 CGAAAAGGAGAAAGTATTGTTCTTCTC 58.776 37.037 2.71 2.71 39.59 2.87
75 77 8.536175 AGGAGAAAGTATTGTTCTTCTCCTAAG 58.464 37.037 24.06 0.00 36.38 2.18
101 103 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
112 114 9.086758 GTGGGAGTAACATAGGTAGTAACATAT 57.913 37.037 0.00 0.00 32.96 1.78
130 132 9.743057 GTAACATATATGCCACATAAGCAAAAA 57.257 29.630 12.79 0.00 44.83 1.94
144 149 2.633967 AGCAAAAATGATGAGGTGGCAA 59.366 40.909 0.00 0.00 0.00 4.52
164 169 5.047188 GCAAGTAGTTAATGAGGAGAGAGC 58.953 45.833 0.00 0.00 0.00 4.09
181 186 7.014808 AGGAGAGAGCCAAATAGAGTAACATAC 59.985 40.741 0.00 0.00 0.00 2.39
194 202 7.098074 AGAGTAACATACTACCTCCTTTTCG 57.902 40.000 0.00 0.00 39.59 3.46
204 212 5.960202 ACTACCTCCTTTTCGGTTTATAGGA 59.040 40.000 0.00 0.00 34.76 2.94
207 215 5.250082 ACCTCCTTTTCGGTTTATAGGACTT 59.750 40.000 0.00 0.00 31.92 3.01
227 235 9.093458 AGGACTTAATTCAAAAATCTCACCAAT 57.907 29.630 0.00 0.00 0.00 3.16
237 245 9.690913 TCAAAAATCTCACCAATCAAGATAGAT 57.309 29.630 0.00 0.00 0.00 1.98
239 247 9.690913 AAAAATCTCACCAATCAAGATAGATGA 57.309 29.630 0.00 0.00 0.00 2.92
246 254 5.996513 ACCAATCAAGATAGATGATGAGTGC 59.003 40.000 0.00 0.00 37.58 4.40
255 263 3.987547 AGATGATGAGTGCTGGAATACG 58.012 45.455 0.00 0.00 0.00 3.06
263 271 4.688879 TGAGTGCTGGAATACGTTTTGTAG 59.311 41.667 0.00 0.00 36.25 2.74
301 314 8.351495 TCAATTAATGTGCTTGTTTTCTTCAC 57.649 30.769 0.00 0.00 0.00 3.18
305 318 8.539770 TTAATGTGCTTGTTTTCTTCACAAAA 57.460 26.923 0.00 0.00 40.46 2.44
320 334 8.309163 TCTTCACAAAATTATGTTTCCAATGC 57.691 30.769 0.00 0.00 0.00 3.56
380 394 8.378421 GCATTGTTCAATTTTCTCTTAATGCTC 58.622 33.333 0.00 0.00 42.52 4.26
381 395 9.414295 CATTGTTCAATTTTCTCTTAATGCTCA 57.586 29.630 0.00 0.00 0.00 4.26
416 430 9.897744 GATTTGATACACTTTGAAATCTGAACA 57.102 29.630 0.00 0.00 32.59 3.18
426 440 6.897706 TTGAAATCTGAACATGTGATGGAA 57.102 33.333 0.00 0.00 33.60 3.53
428 442 6.680810 TGAAATCTGAACATGTGATGGAAAC 58.319 36.000 0.00 0.00 33.60 2.78
451 466 8.707938 AACAATCAAATTGAGCCTTATAAAGC 57.292 30.769 1.10 0.00 42.83 3.51
454 469 4.338118 TCAAATTGAGCCTTATAAAGCGGG 59.662 41.667 0.44 0.00 0.00 6.13
458 473 3.275999 TGAGCCTTATAAAGCGGGAAAC 58.724 45.455 0.44 0.00 0.00 2.78
503 519 2.265526 ACCGGAAAGGAGGGAGTATT 57.734 50.000 9.46 0.00 45.00 1.89
504 520 3.409804 ACCGGAAAGGAGGGAGTATTA 57.590 47.619 9.46 0.00 45.00 0.98
505 521 3.937751 ACCGGAAAGGAGGGAGTATTAT 58.062 45.455 9.46 0.00 45.00 1.28
516 532 7.025620 AGGAGGGAGTATTATGTTACCATCAT 58.974 38.462 0.00 0.00 32.29 2.45
526 542 7.827819 TTATGTTACCATCATATAGCGCTTC 57.172 36.000 18.68 0.00 32.29 3.86
532 548 3.376234 CCATCATATAGCGCTTCCCAATG 59.624 47.826 18.68 14.38 0.00 2.82
545 561 4.491676 CTTCCCAATGCAAAATGAGTCTG 58.508 43.478 0.00 0.00 0.00 3.51
546 562 3.499338 TCCCAATGCAAAATGAGTCTGT 58.501 40.909 0.00 0.00 0.00 3.41
549 565 5.538053 TCCCAATGCAAAATGAGTCTGTAAA 59.462 36.000 0.00 0.00 0.00 2.01
551 567 6.449698 CCAATGCAAAATGAGTCTGTAAAGT 58.550 36.000 0.00 0.00 0.00 2.66
600 616 8.753133 ACCATACATATGACACTATCCACTATG 58.247 37.037 10.38 2.57 35.75 2.23
659 690 2.565834 TCTCCACTGTAACCAGCCTAAC 59.434 50.000 0.00 0.00 42.81 2.34
660 691 1.626825 TCCACTGTAACCAGCCTAACC 59.373 52.381 0.00 0.00 42.81 2.85
661 692 1.349688 CCACTGTAACCAGCCTAACCA 59.650 52.381 0.00 0.00 42.81 3.67
662 693 2.026262 CCACTGTAACCAGCCTAACCAT 60.026 50.000 0.00 0.00 42.81 3.55
663 694 3.270877 CACTGTAACCAGCCTAACCATC 58.729 50.000 0.00 0.00 42.81 3.51
664 695 2.238898 ACTGTAACCAGCCTAACCATCC 59.761 50.000 0.00 0.00 42.81 3.51
665 696 2.238646 CTGTAACCAGCCTAACCATCCA 59.761 50.000 0.00 0.00 0.00 3.41
666 697 2.645297 TGTAACCAGCCTAACCATCCAA 59.355 45.455 0.00 0.00 0.00 3.53
667 698 2.215942 AACCAGCCTAACCATCCAAC 57.784 50.000 0.00 0.00 0.00 3.77
668 699 0.035439 ACCAGCCTAACCATCCAACG 60.035 55.000 0.00 0.00 0.00 4.10
669 700 0.748005 CCAGCCTAACCATCCAACGG 60.748 60.000 0.00 0.00 0.00 4.44
670 701 0.748005 CAGCCTAACCATCCAACGGG 60.748 60.000 0.00 0.00 0.00 5.28
671 702 1.205460 AGCCTAACCATCCAACGGGT 61.205 55.000 0.00 0.00 39.65 5.28
673 704 1.459450 CCTAACCATCCAACGGGTTG 58.541 55.000 6.33 4.58 46.44 3.77
681 712 4.676586 CAACGGGTTGGTTCGCGC 62.677 66.667 0.00 0.00 45.24 6.86
682 713 4.922026 AACGGGTTGGTTCGCGCT 62.922 61.111 5.56 0.00 45.24 5.92
683 714 4.922026 ACGGGTTGGTTCGCGCTT 62.922 61.111 5.56 0.00 45.24 4.68
684 715 4.383602 CGGGTTGGTTCGCGCTTG 62.384 66.667 5.56 0.00 37.01 4.01
685 716 4.700365 GGGTTGGTTCGCGCTTGC 62.700 66.667 5.56 0.00 0.00 4.01
686 717 3.959975 GGTTGGTTCGCGCTTGCA 61.960 61.111 5.56 0.00 39.07 4.08
687 718 2.725815 GTTGGTTCGCGCTTGCAC 60.726 61.111 5.56 0.00 39.07 4.57
692 723 3.345808 TTCGCGCTTGCACTGGAC 61.346 61.111 5.56 0.00 39.07 4.02
713 744 2.484889 GTGTTCTCTTCGTTCTTGGCT 58.515 47.619 0.00 0.00 0.00 4.75
739 770 0.704076 CCTCCATTTCCTCCCCACAA 59.296 55.000 0.00 0.00 0.00 3.33
748 779 0.392998 CCTCCCCACAACAAGGATCG 60.393 60.000 0.00 0.00 0.00 3.69
761 792 2.124695 GATCGGTCCTGCCCCAAC 60.125 66.667 0.00 0.00 0.00 3.77
769 800 4.785453 CTGCCCCAACCGCTCTCC 62.785 72.222 0.00 0.00 0.00 3.71
776 807 1.374947 CAACCGCTCTCCCTCCAAA 59.625 57.895 0.00 0.00 0.00 3.28
777 808 0.955919 CAACCGCTCTCCCTCCAAAC 60.956 60.000 0.00 0.00 0.00 2.93
815 846 3.383620 TTTGCTGTGCCCAATTAAGTG 57.616 42.857 0.00 0.00 0.00 3.16
852 884 3.397618 TGTTCCATCCTCCCTTCTCAAAA 59.602 43.478 0.00 0.00 0.00 2.44
920 956 2.745102 GCCGTCTCAAGAAGTATAGGC 58.255 52.381 0.00 0.00 35.00 3.93
921 957 2.362717 GCCGTCTCAAGAAGTATAGGCT 59.637 50.000 0.00 0.00 39.01 4.58
1077 1114 1.363807 CCATGCATGCTGCCATCAG 59.636 57.895 21.69 0.10 44.23 2.90
1085 1122 4.206958 CTGCCATCAGCTACGCAA 57.793 55.556 0.00 0.00 44.23 4.85
1426 1463 3.627218 GACGCGCTGCCGGTATTC 61.627 66.667 5.73 0.00 34.32 1.75
1744 1781 0.322816 GCCTGGTCATGGAGCAAGAA 60.323 55.000 0.00 0.00 39.59 2.52
2035 2114 4.400961 AGGAAGGACAGCAGCGCC 62.401 66.667 2.29 0.00 0.00 6.53
2353 2435 0.251077 AGTTCTTTGCTCCCCTGCTG 60.251 55.000 0.00 0.00 0.00 4.41
2403 2493 5.278022 GGTTTGCTCTTTTTCTGTTCGATCT 60.278 40.000 0.00 0.00 0.00 2.75
2519 2609 6.040962 TCACTATCGTCTATCGTGTGTTAC 57.959 41.667 0.00 0.00 40.80 2.50
2543 2633 1.725931 GCATTGCTTCGACGAGGTTTG 60.726 52.381 8.86 5.43 0.00 2.93
2560 2672 1.775039 TTGCTCTGAATATGCCGCGC 61.775 55.000 0.00 0.00 0.00 6.86
2565 2677 1.272212 TCTGAATATGCCGCGCTATGA 59.728 47.619 5.56 0.00 0.00 2.15
2566 2678 2.068519 CTGAATATGCCGCGCTATGAA 58.931 47.619 5.56 0.00 0.00 2.57
2567 2679 2.674852 CTGAATATGCCGCGCTATGAAT 59.325 45.455 5.56 0.00 0.00 2.57
2568 2680 3.073678 TGAATATGCCGCGCTATGAATT 58.926 40.909 5.56 0.00 0.00 2.17
2569 2681 3.501828 TGAATATGCCGCGCTATGAATTT 59.498 39.130 5.56 0.00 0.00 1.82
2570 2682 3.747099 ATATGCCGCGCTATGAATTTC 57.253 42.857 5.56 0.00 0.00 2.17
2654 2783 2.024176 TTCGTATTCAGCTCCTTGGC 57.976 50.000 0.00 0.00 0.00 4.52
2675 2804 1.187974 TTTCATTCATGGCTGGGCTG 58.812 50.000 0.00 0.00 0.00 4.85
2676 2805 0.685131 TTCATTCATGGCTGGGCTGG 60.685 55.000 0.00 0.00 0.00 4.85
2677 2806 2.131709 CATTCATGGCTGGGCTGGG 61.132 63.158 0.00 0.00 0.00 4.45
2678 2807 4.764771 TTCATGGCTGGGCTGGGC 62.765 66.667 0.00 0.00 0.00 5.36
2724 2853 2.228822 GAGCTGCCGGATTTTGAAAAGA 59.771 45.455 5.05 0.00 0.00 2.52
2779 2915 0.679002 CCACTTGTGCTGCTGGCTAT 60.679 55.000 0.00 0.00 42.39 2.97
2824 2960 1.684386 ATCCTCCTCGCCTGCTTCAG 61.684 60.000 0.00 0.00 0.00 3.02
2922 3060 4.585955 TTAATGTCTCGTCCTCCATAGC 57.414 45.455 0.00 0.00 0.00 2.97
2934 3072 4.985409 GTCCTCCATAGCAATAACTTCTCG 59.015 45.833 0.00 0.00 0.00 4.04
2955 3093 5.410067 TCGAACCCGAAACGAGTAAATATT 58.590 37.500 0.00 0.00 42.51 1.28
3064 3203 4.051237 AGTTTTTCAGCCGATTTTTCTGC 58.949 39.130 0.00 0.00 0.00 4.26
3080 3219 3.648339 TCTGCATTTTCAGCTGGTTTC 57.352 42.857 15.13 0.00 34.19 2.78
3090 3229 6.584185 TTTCAGCTGGTTTCTTATTAACCC 57.416 37.500 15.13 0.00 43.55 4.11
3180 3320 9.511272 GATCTTTTAAACAACTCCCCTAGTTTA 57.489 33.333 0.00 0.00 46.61 2.01
3235 3375 9.912634 ATGAATTTTATAAATATGCGGGAAGTG 57.087 29.630 0.00 0.00 0.00 3.16
3237 3377 9.744468 GAATTTTATAAATATGCGGGAAGTGTT 57.256 29.630 0.00 0.00 0.00 3.32
3238 3378 9.744468 AATTTTATAAATATGCGGGAAGTGTTC 57.256 29.630 0.00 0.00 0.00 3.18
3241 3381 4.637483 AAATATGCGGGAAGTGTTCATG 57.363 40.909 0.00 0.00 0.00 3.07
3242 3382 3.558931 ATATGCGGGAAGTGTTCATGA 57.441 42.857 0.00 0.00 0.00 3.07
3244 3384 2.198827 TGCGGGAAGTGTTCATGAAT 57.801 45.000 12.12 0.00 0.00 2.57
3246 3386 2.890311 TGCGGGAAGTGTTCATGAATTT 59.110 40.909 12.12 6.94 0.00 1.82
3248 3388 3.674753 GCGGGAAGTGTTCATGAATTTTG 59.325 43.478 12.12 3.51 0.00 2.44
3249 3389 4.558496 GCGGGAAGTGTTCATGAATTTTGA 60.558 41.667 12.12 0.00 0.00 2.69
3250 3390 5.527951 CGGGAAGTGTTCATGAATTTTGAA 58.472 37.500 12.12 1.77 0.00 2.69
3251 3391 5.630680 CGGGAAGTGTTCATGAATTTTGAAG 59.369 40.000 12.12 0.00 33.95 3.02
3342 3483 9.832445 AAAAGAGAAAAAGGGAAAGAAAATACC 57.168 29.630 0.00 0.00 0.00 2.73
3361 3502 7.637709 AATACCGAAAAGAAAAGAAACATGC 57.362 32.000 0.00 0.00 0.00 4.06
3393 3534 2.235891 GAATCTTCCCAAAACCGGTGT 58.764 47.619 8.52 0.00 0.00 4.16
3399 3540 2.048601 TCCCAAAACCGGTGTAAGAGA 58.951 47.619 8.52 0.00 0.00 3.10
3407 3548 3.080319 ACCGGTGTAAGAGAGACTACAC 58.920 50.000 6.12 4.20 41.30 2.90
3431 3572 2.029290 GCTCGTTGAGGAGTCCAACTTA 60.029 50.000 12.86 0.00 41.11 2.24
3435 3576 3.674997 GTTGAGGAGTCCAACTTATGCA 58.325 45.455 12.86 0.00 40.37 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.483916 CTCAAAATTTTAGGTTTCCCGTTTTAT 57.516 29.630 2.44 0.00 35.12 1.40
3 4 8.693625 TCTCAAAATTTTAGGTTTCCCGTTTTA 58.306 29.630 2.44 0.00 35.12 1.52
4 5 7.557724 TCTCAAAATTTTAGGTTTCCCGTTTT 58.442 30.769 2.44 0.00 35.12 2.43
5 6 7.068962 TCTCTCAAAATTTTAGGTTTCCCGTTT 59.931 33.333 2.44 0.00 35.12 3.60
6 7 6.548251 TCTCTCAAAATTTTAGGTTTCCCGTT 59.452 34.615 2.44 0.00 35.12 4.44
7 8 6.066032 TCTCTCAAAATTTTAGGTTTCCCGT 58.934 36.000 2.44 0.00 35.12 5.28
8 9 6.569179 TCTCTCAAAATTTTAGGTTTCCCG 57.431 37.500 2.44 0.00 35.12 5.14
9 10 6.868864 GCTTCTCTCAAAATTTTAGGTTTCCC 59.131 38.462 2.44 0.00 0.00 3.97
10 11 6.868864 GGCTTCTCTCAAAATTTTAGGTTTCC 59.131 38.462 2.44 0.00 0.00 3.13
11 12 6.868864 GGGCTTCTCTCAAAATTTTAGGTTTC 59.131 38.462 2.44 0.00 0.00 2.78
12 13 6.554982 AGGGCTTCTCTCAAAATTTTAGGTTT 59.445 34.615 2.44 0.00 0.00 3.27
13 14 6.077993 AGGGCTTCTCTCAAAATTTTAGGTT 58.922 36.000 2.44 0.00 0.00 3.50
14 15 5.645201 AGGGCTTCTCTCAAAATTTTAGGT 58.355 37.500 2.44 0.00 0.00 3.08
15 16 7.888250 ATAGGGCTTCTCTCAAAATTTTAGG 57.112 36.000 2.44 0.00 0.00 2.69
18 19 8.531982 GGTTTATAGGGCTTCTCTCAAAATTTT 58.468 33.333 0.00 0.00 0.00 1.82
19 20 7.148069 CGGTTTATAGGGCTTCTCTCAAAATTT 60.148 37.037 0.00 0.00 0.00 1.82
20 21 6.318900 CGGTTTATAGGGCTTCTCTCAAAATT 59.681 38.462 0.00 0.00 0.00 1.82
21 22 5.823045 CGGTTTATAGGGCTTCTCTCAAAAT 59.177 40.000 0.00 0.00 0.00 1.82
22 23 5.046159 TCGGTTTATAGGGCTTCTCTCAAAA 60.046 40.000 0.00 0.00 0.00 2.44
23 24 4.468510 TCGGTTTATAGGGCTTCTCTCAAA 59.531 41.667 0.00 0.00 0.00 2.69
24 25 4.028131 TCGGTTTATAGGGCTTCTCTCAA 58.972 43.478 0.00 0.00 0.00 3.02
25 26 3.638860 TCGGTTTATAGGGCTTCTCTCA 58.361 45.455 0.00 0.00 0.00 3.27
26 27 4.667519 TTCGGTTTATAGGGCTTCTCTC 57.332 45.455 0.00 0.00 0.00 3.20
27 28 5.429130 CTTTTCGGTTTATAGGGCTTCTCT 58.571 41.667 0.00 0.00 0.00 3.10
28 29 4.575236 CCTTTTCGGTTTATAGGGCTTCTC 59.425 45.833 0.00 0.00 0.00 2.87
29 30 4.226620 TCCTTTTCGGTTTATAGGGCTTCT 59.773 41.667 0.00 0.00 0.00 2.85
30 31 4.520179 TCCTTTTCGGTTTATAGGGCTTC 58.480 43.478 0.00 0.00 0.00 3.86
31 32 4.226620 TCTCCTTTTCGGTTTATAGGGCTT 59.773 41.667 0.00 0.00 0.00 4.35
32 33 3.778629 TCTCCTTTTCGGTTTATAGGGCT 59.221 43.478 0.00 0.00 0.00 5.19
33 34 4.146745 TCTCCTTTTCGGTTTATAGGGC 57.853 45.455 0.00 0.00 0.00 5.19
34 35 6.178324 ACTTTCTCCTTTTCGGTTTATAGGG 58.822 40.000 0.00 0.00 0.00 3.53
35 36 8.959705 ATACTTTCTCCTTTTCGGTTTATAGG 57.040 34.615 0.00 0.00 0.00 2.57
37 38 9.729281 ACAATACTTTCTCCTTTTCGGTTTATA 57.271 29.630 0.00 0.00 0.00 0.98
38 39 8.631480 ACAATACTTTCTCCTTTTCGGTTTAT 57.369 30.769 0.00 0.00 0.00 1.40
39 40 8.454570 AACAATACTTTCTCCTTTTCGGTTTA 57.545 30.769 0.00 0.00 0.00 2.01
40 41 6.954487 ACAATACTTTCTCCTTTTCGGTTT 57.046 33.333 0.00 0.00 0.00 3.27
41 42 6.771267 AGAACAATACTTTCTCCTTTTCGGTT 59.229 34.615 0.00 0.00 0.00 4.44
42 43 6.296803 AGAACAATACTTTCTCCTTTTCGGT 58.703 36.000 0.00 0.00 0.00 4.69
43 44 6.803154 AGAACAATACTTTCTCCTTTTCGG 57.197 37.500 0.00 0.00 0.00 4.30
44 45 8.089115 AGAAGAACAATACTTTCTCCTTTTCG 57.911 34.615 0.00 0.00 31.87 3.46
45 46 8.508062 GGAGAAGAACAATACTTTCTCCTTTTC 58.492 37.037 19.65 0.00 37.91 2.29
46 47 8.221251 AGGAGAAGAACAATACTTTCTCCTTTT 58.779 33.333 22.49 7.42 42.26 2.27
47 48 7.750655 AGGAGAAGAACAATACTTTCTCCTTT 58.249 34.615 22.49 7.99 42.26 3.11
48 49 7.323052 AGGAGAAGAACAATACTTTCTCCTT 57.677 36.000 22.49 11.38 42.26 3.36
49 50 6.943899 AGGAGAAGAACAATACTTTCTCCT 57.056 37.500 22.49 22.49 41.39 3.69
50 51 7.766738 CCTTAGGAGAAGAACAATACTTTCTCC 59.233 40.741 19.42 19.42 39.29 3.71
51 52 7.279090 GCCTTAGGAGAAGAACAATACTTTCTC 59.721 40.741 0.69 4.87 31.87 2.87
52 53 7.037945 AGCCTTAGGAGAAGAACAATACTTTCT 60.038 37.037 0.69 0.00 34.66 2.52
53 54 7.065204 CAGCCTTAGGAGAAGAACAATACTTTC 59.935 40.741 0.69 0.00 0.00 2.62
54 55 6.881602 CAGCCTTAGGAGAAGAACAATACTTT 59.118 38.462 0.69 0.00 0.00 2.66
55 56 6.410540 CAGCCTTAGGAGAAGAACAATACTT 58.589 40.000 0.69 0.00 0.00 2.24
56 57 5.104735 CCAGCCTTAGGAGAAGAACAATACT 60.105 44.000 0.69 0.00 0.00 2.12
57 58 5.119694 CCAGCCTTAGGAGAAGAACAATAC 58.880 45.833 0.69 0.00 0.00 1.89
64 65 2.623418 TGACCAGCCTTAGGAGAAGA 57.377 50.000 0.69 0.00 0.00 2.87
68 70 2.366916 CCACTATGACCAGCCTTAGGAG 59.633 54.545 0.69 0.00 0.00 3.69
69 71 2.398588 CCACTATGACCAGCCTTAGGA 58.601 52.381 0.69 0.00 0.00 2.94
70 72 1.417890 CCCACTATGACCAGCCTTAGG 59.582 57.143 0.00 0.00 0.00 2.69
75 77 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
101 103 8.771920 TGCTTATGTGGCATATATGTTACTAC 57.228 34.615 14.14 6.50 34.56 2.73
112 114 7.110043 TCATCATTTTTGCTTATGTGGCATA 57.890 32.000 0.00 0.00 39.54 3.14
130 132 5.435686 TTAACTACTTGCCACCTCATCAT 57.564 39.130 0.00 0.00 0.00 2.45
144 149 4.873010 TGGCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
164 169 8.480133 AGGAGGTAGTATGTTACTCTATTTGG 57.520 38.462 0.00 0.00 40.14 3.28
181 186 6.097981 AGTCCTATAAACCGAAAAGGAGGTAG 59.902 42.308 0.00 0.00 45.00 3.18
223 231 6.147985 CAGCACTCATCATCTATCTTGATTGG 59.852 42.308 0.00 0.00 31.50 3.16
224 232 6.147985 CCAGCACTCATCATCTATCTTGATTG 59.852 42.308 0.00 0.00 31.50 2.67
227 235 4.897670 TCCAGCACTCATCATCTATCTTGA 59.102 41.667 0.00 0.00 0.00 3.02
232 240 5.244851 ACGTATTCCAGCACTCATCATCTAT 59.755 40.000 0.00 0.00 0.00 1.98
237 245 3.610040 AACGTATTCCAGCACTCATCA 57.390 42.857 0.00 0.00 0.00 3.07
239 247 4.072131 ACAAAACGTATTCCAGCACTCAT 58.928 39.130 0.00 0.00 0.00 2.90
246 254 5.753744 TGCAAACTACAAAACGTATTCCAG 58.246 37.500 0.00 0.00 0.00 3.86
275 283 8.816144 GTGAAGAAAACAAGCACATTAATTGAA 58.184 29.630 0.00 0.00 0.00 2.69
276 284 7.978414 TGTGAAGAAAACAAGCACATTAATTGA 59.022 29.630 0.00 0.00 34.85 2.57
286 299 8.715191 ACATAATTTTGTGAAGAAAACAAGCA 57.285 26.923 0.33 0.00 38.67 3.91
287 300 9.986833 AAACATAATTTTGTGAAGAAAACAAGC 57.013 25.926 2.10 0.00 38.67 4.01
297 310 8.618702 ATGCATTGGAAACATAATTTTGTGAA 57.381 26.923 2.10 0.00 42.32 3.18
360 374 7.543172 GCATGTGAGCATTAAGAGAAAATTGAA 59.457 33.333 0.00 0.00 31.99 2.69
377 391 5.457799 GTGTATCAAATCATTGCATGTGAGC 59.542 40.000 8.11 0.00 36.45 4.26
380 394 7.542824 TCAAAGTGTATCAAATCATTGCATGTG 59.457 33.333 0.00 0.00 36.45 3.21
381 395 7.604549 TCAAAGTGTATCAAATCATTGCATGT 58.395 30.769 0.00 0.00 36.45 3.21
395 409 8.506437 TCACATGTTCAGATTTCAAAGTGTATC 58.494 33.333 0.00 0.00 0.00 2.24
398 412 6.698008 TCACATGTTCAGATTTCAAAGTGT 57.302 33.333 0.00 0.00 0.00 3.55
402 416 6.897706 TCCATCACATGTTCAGATTTCAAA 57.102 33.333 0.00 0.00 0.00 2.69
406 420 6.653526 TGTTTCCATCACATGTTCAGATTT 57.346 33.333 0.00 0.00 0.00 2.17
416 430 6.592607 GCTCAATTTGATTGTTTCCATCACAT 59.407 34.615 0.00 0.00 41.02 3.21
426 440 7.489113 CGCTTTATAAGGCTCAATTTGATTGTT 59.511 33.333 16.50 0.00 41.02 2.83
428 442 6.418819 CCGCTTTATAAGGCTCAATTTGATTG 59.581 38.462 16.50 0.00 41.57 2.67
429 443 6.461509 CCCGCTTTATAAGGCTCAATTTGATT 60.462 38.462 16.50 0.00 0.00 2.57
431 445 4.338118 CCCGCTTTATAAGGCTCAATTTGA 59.662 41.667 16.50 0.00 0.00 2.69
435 450 3.857157 TCCCGCTTTATAAGGCTCAAT 57.143 42.857 16.50 0.00 0.00 2.57
450 465 5.128992 TCTCAAAATTTTAGGTTTCCCGC 57.871 39.130 2.44 0.00 35.12 6.13
451 466 6.156519 CCTTCTCAAAATTTTAGGTTTCCCG 58.843 40.000 2.44 0.00 35.12 5.14
454 469 5.932303 GGGCCTTCTCAAAATTTTAGGTTTC 59.068 40.000 15.62 8.29 0.00 2.78
458 473 8.533569 TTATAGGGCCTTCTCAAAATTTTAGG 57.466 34.615 13.45 11.60 0.00 2.69
463 478 5.359860 CGGTTTATAGGGCCTTCTCAAAATT 59.640 40.000 13.45 0.00 0.00 1.82
473 488 1.493446 CCTTTCCGGTTTATAGGGCCT 59.507 52.381 12.58 12.58 0.00 5.19
474 489 1.491754 TCCTTTCCGGTTTATAGGGCC 59.508 52.381 0.00 0.00 0.00 5.80
516 532 2.340210 TTGCATTGGGAAGCGCTATA 57.660 45.000 12.05 0.00 0.00 1.31
526 542 3.947910 ACAGACTCATTTTGCATTGGG 57.052 42.857 0.00 0.00 0.00 4.12
633 662 3.197983 GGCTGGTTACAGTGGAGAGTAAT 59.802 47.826 0.00 0.00 46.62 1.89
646 677 3.014623 GTTGGATGGTTAGGCTGGTTAC 58.985 50.000 0.00 0.00 0.00 2.50
648 679 1.613255 CGTTGGATGGTTAGGCTGGTT 60.613 52.381 0.00 0.00 0.00 3.67
664 695 4.676586 GCGCGAACCAACCCGTTG 62.677 66.667 12.10 0.39 40.13 4.10
665 696 4.922026 AGCGCGAACCAACCCGTT 62.922 61.111 12.10 0.00 0.00 4.44
666 697 4.922026 AAGCGCGAACCAACCCGT 62.922 61.111 12.10 0.00 0.00 5.28
667 698 4.383602 CAAGCGCGAACCAACCCG 62.384 66.667 12.10 0.00 0.00 5.28
668 699 4.700365 GCAAGCGCGAACCAACCC 62.700 66.667 12.10 0.00 0.00 4.11
669 700 3.959975 TGCAAGCGCGAACCAACC 61.960 61.111 12.10 0.00 42.97 3.77
670 701 2.725815 GTGCAAGCGCGAACCAAC 60.726 61.111 12.10 0.00 42.97 3.77
671 702 2.899838 AGTGCAAGCGCGAACCAA 60.900 55.556 12.10 0.00 42.97 3.67
672 703 3.648982 CAGTGCAAGCGCGAACCA 61.649 61.111 12.10 0.00 42.97 3.67
673 704 4.389576 CCAGTGCAAGCGCGAACC 62.390 66.667 12.10 0.00 42.97 3.62
674 705 3.345808 TCCAGTGCAAGCGCGAAC 61.346 61.111 12.10 0.00 42.97 3.95
675 706 3.345808 GTCCAGTGCAAGCGCGAA 61.346 61.111 12.10 0.00 42.97 4.70
678 709 4.374702 CACGTCCAGTGCAAGCGC 62.375 66.667 0.00 0.00 44.72 5.92
686 717 1.030457 ACGAAGAGAACACGTCCAGT 58.970 50.000 0.00 0.00 35.33 4.00
687 718 2.052157 GAACGAAGAGAACACGTCCAG 58.948 52.381 0.00 0.00 39.31 3.86
692 723 1.192534 GCCAAGAACGAAGAGAACACG 59.807 52.381 0.00 0.00 0.00 4.49
761 792 1.376037 GTGTTTGGAGGGAGAGCGG 60.376 63.158 0.00 0.00 0.00 5.52
769 800 2.158813 AGTAGGTGTGTGTGTTTGGAGG 60.159 50.000 0.00 0.00 0.00 4.30
776 807 2.973694 AAACGAGTAGGTGTGTGTGT 57.026 45.000 0.00 0.00 0.00 3.72
777 808 3.787476 GCAAAAACGAGTAGGTGTGTGTG 60.787 47.826 0.00 0.00 0.00 3.82
815 846 2.037772 TGGAACAGAGAAACAGAGGAGC 59.962 50.000 0.00 0.00 0.00 4.70
852 884 6.959639 TGTCCTAAGCTTTTGTTTGAATCT 57.040 33.333 3.20 0.00 0.00 2.40
920 956 1.870901 GTGGCTTCGCGTACCGTAG 60.871 63.158 5.77 6.18 37.40 3.51
921 957 1.936436 ATGTGGCTTCGCGTACCGTA 61.936 55.000 5.77 0.00 38.35 4.02
929 965 4.539152 CACAACATGTGGCTTCGC 57.461 55.556 0.00 0.00 44.27 4.70
1172 1209 3.100862 GAAAGCCTGCATCGACGGC 62.101 63.158 5.80 5.80 44.09 5.68
1744 1781 3.862642 GCGTCTGACTTTCACATCCTTCT 60.863 47.826 6.21 0.00 0.00 2.85
2293 2372 3.731547 TGGCCTCTGATCCACAGG 58.268 61.111 3.32 0.00 45.76 4.00
2403 2493 3.982701 CGCAAAATGCTTCAAATCTCACA 59.017 39.130 0.43 0.00 42.25 3.58
2519 2609 0.094216 CTCGTCGAAGCAATGCACAG 59.906 55.000 8.35 0.00 0.00 3.66
2543 2633 0.667487 TAGCGCGGCATATTCAGAGC 60.667 55.000 8.83 0.00 0.00 4.09
2565 2677 9.550406 TGCTCTCTGAATTTTGAAATTGAAATT 57.450 25.926 6.44 6.98 38.64 1.82
2566 2678 9.550406 TTGCTCTCTGAATTTTGAAATTGAAAT 57.450 25.926 6.44 0.00 38.64 2.17
2567 2679 8.945481 TTGCTCTCTGAATTTTGAAATTGAAA 57.055 26.923 6.44 0.00 38.64 2.69
2568 2680 8.819974 GTTTGCTCTCTGAATTTTGAAATTGAA 58.180 29.630 6.44 0.00 38.64 2.69
2569 2681 8.199449 AGTTTGCTCTCTGAATTTTGAAATTGA 58.801 29.630 6.44 0.00 38.64 2.57
2570 2682 8.273557 CAGTTTGCTCTCTGAATTTTGAAATTG 58.726 33.333 6.44 0.00 38.64 2.32
2654 2783 1.829222 AGCCCAGCCATGAATGAAAAG 59.171 47.619 0.00 0.00 0.00 2.27
2676 2805 2.210711 CCGGATCCAGGGTAGAGCC 61.211 68.421 13.41 0.00 36.43 4.70
2677 2806 1.152525 TCCGGATCCAGGGTAGAGC 60.153 63.158 13.41 0.00 0.00 4.09
2678 2807 1.173444 CGTCCGGATCCAGGGTAGAG 61.173 65.000 7.81 0.00 0.00 2.43
2679 2808 1.152819 CGTCCGGATCCAGGGTAGA 60.153 63.158 7.81 0.00 0.00 2.59
2724 2853 9.097257 CCCACGCATTATTATGAAAGAAATTTT 57.903 29.630 0.00 0.00 33.37 1.82
2779 2915 4.901197 TGTGATGCAGGAAAGTAGGTAA 57.099 40.909 0.00 0.00 0.00 2.85
2824 2960 1.355971 TTATGCGAGTGTTCTTCGGC 58.644 50.000 0.00 0.00 0.00 5.54
2864 3000 2.958578 AAGTCCACCAGCCAACCGTG 62.959 60.000 0.00 0.00 0.00 4.94
2894 3030 4.344448 GAGGACGAGACATTAAAGTCGAG 58.656 47.826 5.26 6.21 43.24 4.04
2922 3060 4.433805 CGTTTCGGGTTCGAGAAGTTATTG 60.434 45.833 0.00 0.00 46.75 1.90
2934 3072 6.834876 ACAAATATTTACTCGTTTCGGGTTC 58.165 36.000 0.00 0.00 37.20 3.62
2955 3093 4.837093 ATGAGACTCCCCGAAAATACAA 57.163 40.909 0.00 0.00 0.00 2.41
2964 3102 1.227089 CGCTGAATGAGACTCCCCG 60.227 63.158 0.00 0.00 0.00 5.73
3023 3162 2.694760 GGTCGTACGAAGCGAGGGT 61.695 63.158 21.39 0.00 39.14 4.34
3029 3168 2.540931 TGAAAAACTGGTCGTACGAAGC 59.459 45.455 21.39 13.95 0.00 3.86
3064 3203 7.545615 GGGTTAATAAGAAACCAGCTGAAAATG 59.454 37.037 17.39 0.00 46.85 2.32
3210 3350 8.908903 ACACTTCCCGCATATTTATAAAATTCA 58.091 29.630 1.21 0.00 0.00 2.57
3211 3351 9.744468 AACACTTCCCGCATATTTATAAAATTC 57.256 29.630 1.21 0.00 0.00 2.17
3218 3358 6.061441 TCATGAACACTTCCCGCATATTTAT 58.939 36.000 0.00 0.00 0.00 1.40
3219 3359 5.432645 TCATGAACACTTCCCGCATATTTA 58.567 37.500 0.00 0.00 0.00 1.40
3228 3368 6.748132 TCTTCAAAATTCATGAACACTTCCC 58.252 36.000 11.07 0.00 33.47 3.97
3316 3457 9.832445 GGTATTTTCTTTCCCTTTTTCTCTTTT 57.168 29.630 0.00 0.00 0.00 2.27
3320 3461 7.210718 TCGGTATTTTCTTTCCCTTTTTCTC 57.789 36.000 0.00 0.00 0.00 2.87
3321 3462 7.591421 TTCGGTATTTTCTTTCCCTTTTTCT 57.409 32.000 0.00 0.00 0.00 2.52
3322 3463 8.651391 TTTTCGGTATTTTCTTTCCCTTTTTC 57.349 30.769 0.00 0.00 0.00 2.29
3323 3464 8.479689 TCTTTTCGGTATTTTCTTTCCCTTTTT 58.520 29.630 0.00 0.00 0.00 1.94
3329 3470 9.524106 TTCTTTTCTTTTCGGTATTTTCTTTCC 57.476 29.630 0.00 0.00 0.00 3.13
3341 3482 4.367450 TGGCATGTTTCTTTTCTTTTCGG 58.633 39.130 0.00 0.00 0.00 4.30
3342 3483 6.183360 GCTATGGCATGTTTCTTTTCTTTTCG 60.183 38.462 10.98 0.00 38.54 3.46
3359 3500 3.701040 GGAAGATTCCAAAAGCTATGGCA 59.299 43.478 12.56 3.71 46.76 4.92
3393 3534 2.641305 GAGCCCGTGTAGTCTCTCTTA 58.359 52.381 0.00 0.00 0.00 2.10
3407 3548 2.182030 GACTCCTCAACGAGCCCG 59.818 66.667 0.00 0.00 42.50 6.13
3419 3560 5.841957 AAATGATGCATAAGTTGGACTCC 57.158 39.130 0.00 0.00 0.00 3.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.