Multiple sequence alignment - TraesCS4D01G192700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G192700 chr4D 100.000 3546 0 0 1 3546 335892254 335895799 0.000000e+00 6549.0
1 TraesCS4D01G192700 chr4D 83.590 390 53 8 1546 1934 335781525 335781904 4.350000e-94 355.0
2 TraesCS4D01G192700 chr4D 88.272 162 17 2 490 651 335887920 335888079 3.610000e-45 193.0
3 TraesCS4D01G192700 chr4D 85.294 170 23 2 482 651 335887048 335887215 1.310000e-39 174.0
4 TraesCS4D01G192700 chr4D 77.116 319 56 14 965 1270 336117879 336118193 6.090000e-38 169.0
5 TraesCS4D01G192700 chr4D 82.796 186 29 3 466 651 335887467 335887649 2.830000e-36 163.0
6 TraesCS4D01G192700 chr4D 88.793 116 11 2 2950 3063 464135195 464135310 1.330000e-29 141.0
7 TraesCS4D01G192700 chr4B 90.829 1134 51 24 829 1934 413871011 413872119 0.000000e+00 1469.0
8 TraesCS4D01G192700 chr4B 90.153 782 54 10 9 769 413870224 413871003 0.000000e+00 996.0
9 TraesCS4D01G192700 chr4B 90.870 460 38 3 2227 2682 413872162 413872621 6.510000e-172 614.0
10 TraesCS4D01G192700 chr4B 89.647 425 36 7 3064 3485 413872890 413873309 5.210000e-148 534.0
11 TraesCS4D01G192700 chr4B 76.901 697 111 31 998 1669 413859725 413860396 2.030000e-92 350.0
12 TraesCS4D01G192700 chr4B 86.777 121 13 3 2944 3062 580383212 580383093 7.990000e-27 132.0
13 TraesCS4D01G192700 chr4A 89.450 1109 70 18 894 1971 137169021 137167929 0.000000e+00 1356.0
14 TraesCS4D01G192700 chr4A 89.183 869 58 11 17 864 137169871 137169018 0.000000e+00 1051.0
15 TraesCS4D01G192700 chr4A 86.226 726 61 17 2213 2915 137167932 137167223 0.000000e+00 750.0
16 TraesCS4D01G192700 chr4A 88.967 426 32 8 3064 3487 137167235 137166823 2.440000e-141 512.0
17 TraesCS4D01G192700 chr4A 83.333 390 54 8 1546 1934 137178601 137178222 2.030000e-92 350.0
18 TraesCS4D01G192700 chr4A 82.042 284 42 5 998 1278 137175493 137175216 2.130000e-57 233.0
19 TraesCS4D01G192700 chr4A 77.636 313 55 14 966 1270 136928300 136927995 3.640000e-40 176.0
20 TraesCS4D01G192700 chr4A 85.455 165 24 0 1559 1723 137174998 137174834 4.710000e-39 172.0
21 TraesCS4D01G192700 chr4A 83.152 184 26 5 3064 3245 709869857 709869677 2.830000e-36 163.0
22 TraesCS4D01G192700 chr4A 91.379 116 10 0 1370 1485 136927964 136927849 3.660000e-35 159.0
23 TraesCS4D01G192700 chr6B 88.991 218 15 4 2003 2212 8687226 8687442 9.760000e-66 261.0
24 TraesCS4D01G192700 chr6B 89.202 213 14 5 2008 2212 8670915 8671126 1.260000e-64 257.0
25 TraesCS4D01G192700 chr6B 89.202 213 14 5 2008 2212 8700349 8700560 1.260000e-64 257.0
26 TraesCS4D01G192700 chr6B 89.202 213 14 5 2008 2212 8750659 8750870 1.260000e-64 257.0
27 TraesCS4D01G192700 chr6B 82.065 184 29 4 3064 3245 530985364 530985545 1.700000e-33 154.0
28 TraesCS4D01G192700 chr6B 84.146 82 7 3 2640 2717 677646292 677646371 1.370000e-09 75.0
29 TraesCS4D01G192700 chrUn 89.202 213 14 4 2008 2212 200758018 200758229 1.260000e-64 257.0
30 TraesCS4D01G192700 chrUn 89.202 213 14 4 2008 2212 200771138 200771349 1.260000e-64 257.0
31 TraesCS4D01G192700 chrUn 89.202 213 14 4 2008 2212 234337034 234336823 1.260000e-64 257.0
32 TraesCS4D01G192700 chrUn 88.732 213 15 4 2008 2212 200670238 200670027 5.880000e-63 252.0
33 TraesCS4D01G192700 chrUn 88.732 213 15 4 2008 2212 300146315 300146104 5.880000e-63 252.0
34 TraesCS4D01G192700 chr2A 83.152 184 28 3 3064 3245 755385486 755385304 7.880000e-37 165.0
35 TraesCS4D01G192700 chr5B 83.529 170 26 2 17 186 129359686 129359853 1.320000e-34 158.0
36 TraesCS4D01G192700 chr5B 88.636 44 5 0 2784 2827 229587195 229587152 2.000000e-03 54.7
37 TraesCS4D01G192700 chr6D 77.959 245 50 4 15 258 324493070 324492829 2.210000e-32 150.0
38 TraesCS4D01G192700 chr7B 83.436 163 15 5 2915 3066 740445574 740445413 1.330000e-29 141.0
39 TraesCS4D01G192700 chr7B 83.436 163 15 5 2915 3066 740447376 740447215 1.330000e-29 141.0
40 TraesCS4D01G192700 chr7B 83.436 163 15 5 2915 3066 740454584 740454423 1.330000e-29 141.0
41 TraesCS4D01G192700 chr7B 82.822 163 16 5 2915 3066 740450980 740450819 6.170000e-28 135.0
42 TraesCS4D01G192700 chr7B 86.508 126 13 4 2944 3066 740452745 740452621 6.170000e-28 135.0
43 TraesCS4D01G192700 chr7B 80.723 166 30 2 3081 3245 458857179 458857015 1.030000e-25 128.0
44 TraesCS4D01G192700 chr1B 80.645 186 30 6 3064 3245 633782938 633783121 4.770000e-29 139.0
45 TraesCS4D01G192700 chr3A 81.595 163 27 3 3074 3233 36665443 36665281 7.990000e-27 132.0
46 TraesCS4D01G192700 chr3A 93.478 46 3 0 3489 3534 24198463 24198418 6.350000e-08 69.4
47 TraesCS4D01G192700 chr3A 92.105 38 3 0 174 211 614450072 614450035 2.000000e-03 54.7
48 TraesCS4D01G192700 chr3A 100.000 28 0 0 259 286 25898487 25898514 6.000000e-03 52.8
49 TraesCS4D01G192700 chr2B 87.395 119 10 5 2944 3060 646025064 646025179 7.990000e-27 132.0
50 TraesCS4D01G192700 chr2B 82.524 103 11 4 2638 2738 514346503 514346406 2.270000e-12 84.2
51 TraesCS4D01G192700 chr7A 79.894 189 29 6 3064 3245 715757528 715757714 2.870000e-26 130.0
52 TraesCS4D01G192700 chr7A 80.189 106 9 7 2638 2739 10875556 10875653 6.350000e-08 69.4
53 TraesCS4D01G192700 chr3D 79.581 191 27 9 3064 3245 372612035 372611848 3.720000e-25 126.0
54 TraesCS4D01G192700 chr3D 92.308 39 3 0 14 52 441132330 441132292 4.950000e-04 56.5
55 TraesCS4D01G192700 chr5A 84.034 119 15 4 2950 3065 663375229 663375346 1.040000e-20 111.0
56 TraesCS4D01G192700 chr5A 83.784 74 9 3 2640 2712 585399471 585399542 2.280000e-07 67.6
57 TraesCS4D01G192700 chr5A 90.000 40 4 0 2784 2823 280789076 280789037 6.000000e-03 52.8
58 TraesCS4D01G192700 chr5D 81.679 131 21 2 49 179 117711905 117711778 4.840000e-19 106.0
59 TraesCS4D01G192700 chr5D 93.103 58 4 0 2784 2841 348162648 348162705 6.310000e-13 86.1
60 TraesCS4D01G192700 chr5D 88.636 44 5 0 2784 2827 214641300 214641257 2.000000e-03 54.7
61 TraesCS4D01G192700 chr2D 85.057 87 7 4 2638 2721 437903740 437903657 2.270000e-12 84.2
62 TraesCS4D01G192700 chr2D 83.117 77 9 3 2640 2712 166139078 166139002 2.280000e-07 67.6
63 TraesCS4D01G192700 chr3B 92.727 55 3 1 3481 3534 157918901 157918847 1.060000e-10 78.7
64 TraesCS4D01G192700 chr3B 92.308 52 0 2 2640 2687 819010790 819010841 1.770000e-08 71.3
65 TraesCS4D01G192700 chr6A 81.081 74 8 5 2741 2811 405292151 405292081 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G192700 chr4D 335892254 335895799 3545 False 6549.000000 6549 100.00000 1 3546 1 chr4D.!!$F2 3545
1 TraesCS4D01G192700 chr4B 413870224 413873309 3085 False 903.250000 1469 90.37475 9 3485 4 chr4B.!!$F2 3476
2 TraesCS4D01G192700 chr4B 413859725 413860396 671 False 350.000000 350 76.90100 998 1669 1 chr4B.!!$F1 671
3 TraesCS4D01G192700 chr4A 137166823 137169871 3048 True 917.250000 1356 88.45650 17 3487 4 chr4A.!!$R3 3470
4 TraesCS4D01G192700 chr4A 137174834 137178601 3767 True 251.666667 350 83.61000 998 1934 3 chr4A.!!$R4 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.176680 CACTTCTCCGAGGTCATGGG 59.823 60.0 0.0 0.0 0.00 4.00 F
1829 3993 0.036952 TCCTTCCAGCTTTCGCTCAG 60.037 55.0 0.0 0.0 45.15 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 4113 0.034380 ACATGCTGAAGCTCAGGCAT 60.034 50.0 12.43 12.43 44.43 4.40 R
2953 5182 0.033504 GAGTCGAACCCTTGTCTGCA 59.966 55.0 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.815089 AGAAGATCATACATGACCACTTCTC 58.185 40.000 20.22 5.85 43.27 2.87
57 58 0.176680 CACTTCTCCGAGGTCATGGG 59.823 60.000 0.00 0.00 0.00 4.00
104 105 4.706962 ACTTTAATTGGGATGAGCTCAACC 59.293 41.667 29.83 29.83 40.45 3.77
105 106 2.905415 AATTGGGATGAGCTCAACCA 57.095 45.000 35.53 32.38 40.45 3.67
112 113 1.541588 GATGAGCTCAACCAACAACCC 59.458 52.381 22.50 0.00 0.00 4.11
144 154 4.261072 GCATGTCCTTGATGTTGCTATCAG 60.261 45.833 0.00 0.00 38.25 2.90
145 155 3.877559 TGTCCTTGATGTTGCTATCAGG 58.122 45.455 0.00 0.00 38.25 3.86
173 185 1.007118 AGGTTTGGGAGGCCATTAAGG 59.993 52.381 5.01 0.00 41.84 2.69
225 237 3.319238 CGGATTGCCATACGTCTTTTC 57.681 47.619 0.00 0.00 31.30 2.29
230 242 5.106317 GGATTGCCATACGTCTTTTCTCAAA 60.106 40.000 0.00 0.00 0.00 2.69
281 293 3.055602 GGATGAGCCAAATCTTTTGCCTT 60.056 43.478 0.00 0.00 36.34 4.35
431 445 5.677319 AAGGGAAAGATAAGATGACACGA 57.323 39.130 0.00 0.00 0.00 4.35
548 562 3.181512 GCTGCTGTAGAATTCTCTTGCAC 60.182 47.826 12.24 4.76 32.01 4.57
616 634 6.279882 TCCTTTGAGGTTTTGTATTTTGCTG 58.720 36.000 0.00 0.00 36.53 4.41
688 712 3.114065 GGTTTACGCGATCTAGTTCTGG 58.886 50.000 15.93 0.00 0.00 3.86
750 775 4.655762 ACTCTTCCAAAAGAAACAAGCC 57.344 40.909 0.00 0.00 40.95 4.35
769 794 6.820656 ACAAGCCTCATTAGATTGTGTAGAAG 59.179 38.462 0.00 0.00 33.68 2.85
771 796 6.344500 AGCCTCATTAGATTGTGTAGAAGTG 58.656 40.000 0.00 0.00 0.00 3.16
772 797 5.007136 GCCTCATTAGATTGTGTAGAAGTGC 59.993 44.000 0.00 0.00 0.00 4.40
773 798 6.108687 CCTCATTAGATTGTGTAGAAGTGCA 58.891 40.000 0.00 0.00 0.00 4.57
774 799 6.765036 CCTCATTAGATTGTGTAGAAGTGCAT 59.235 38.462 0.00 0.00 0.00 3.96
775 800 7.928167 CCTCATTAGATTGTGTAGAAGTGCATA 59.072 37.037 0.00 0.00 0.00 3.14
776 801 9.486497 CTCATTAGATTGTGTAGAAGTGCATAT 57.514 33.333 0.00 0.00 0.00 1.78
790 815 5.700402 AGTGCATATAGAACACCCTTTCT 57.300 39.130 0.00 0.00 39.28 2.52
791 816 6.808321 AGTGCATATAGAACACCCTTTCTA 57.192 37.500 0.00 0.00 41.31 2.10
796 821 7.769044 TGCATATAGAACACCCTTTCTAGTTTC 59.231 37.037 0.00 0.00 40.59 2.78
811 836 1.889573 TTTCGCATGGACACACGCA 60.890 52.632 0.00 0.00 35.05 5.24
818 843 2.029666 GGACACACGCAGCTGAGT 59.970 61.111 20.43 19.19 0.00 3.41
865 890 1.804748 GACCTTTAAACCACCTCGCTG 59.195 52.381 0.00 0.00 0.00 5.18
866 891 0.521735 CCTTTAAACCACCTCGCTGC 59.478 55.000 0.00 0.00 0.00 5.25
868 893 0.948678 TTTAAACCACCTCGCTGCAC 59.051 50.000 0.00 0.00 0.00 4.57
869 894 0.179043 TTAAACCACCTCGCTGCACA 60.179 50.000 0.00 0.00 0.00 4.57
870 895 0.882927 TAAACCACCTCGCTGCACAC 60.883 55.000 0.00 0.00 0.00 3.82
871 896 4.969196 ACCACCTCGCTGCACACG 62.969 66.667 0.00 0.00 0.00 4.49
961 986 2.124403 GGAGCTCCCGACGGTCTA 60.124 66.667 23.19 0.00 0.00 2.59
972 1008 1.394618 GACGGTCTACATCCTCTGCT 58.605 55.000 0.00 0.00 0.00 4.24
982 1018 4.708576 ACATCCTCTGCTCATTGATCAT 57.291 40.909 0.00 0.00 0.00 2.45
1147 3277 0.321564 TCTGTGCCCCGACTCATTTG 60.322 55.000 0.00 0.00 0.00 2.32
1218 3348 4.436998 GCGGACCTCACCCTCGTG 62.437 72.222 0.00 0.00 41.72 4.35
1296 3426 3.732212 TCGCCGCACTATAGTACTAGAA 58.268 45.455 4.74 0.00 0.00 2.10
1297 3427 4.321718 TCGCCGCACTATAGTACTAGAAT 58.678 43.478 4.74 0.00 0.00 2.40
1298 3428 4.153655 TCGCCGCACTATAGTACTAGAATG 59.846 45.833 4.74 5.16 0.00 2.67
1360 3494 0.466543 TACTGACTGTTTGGCGGTGT 59.533 50.000 0.00 0.00 44.50 4.16
1380 3516 1.875009 ATGGTGCTGATGCTGATACG 58.125 50.000 0.00 0.00 40.48 3.06
1431 3573 2.908940 GGCCCCGATGAATGCCTG 60.909 66.667 0.00 0.00 40.77 4.85
1434 3576 2.191513 CCCCGATGAATGCCTGCTG 61.192 63.158 0.00 0.00 0.00 4.41
1514 3669 1.468914 CATCGTCGTCTCTCCTCACAA 59.531 52.381 0.00 0.00 0.00 3.33
1549 3704 1.380302 GCCCTGGCCGGATATGATT 59.620 57.895 15.09 0.00 34.56 2.57
1550 3705 0.618458 GCCCTGGCCGGATATGATTA 59.382 55.000 15.09 0.00 34.56 1.75
1582 3737 3.243367 GCTGTTGTTGGTTGCAGAATGTA 60.243 43.478 0.00 0.00 39.31 2.29
1604 3759 3.317711 ACATTTCGGTTTCATCAACTGCA 59.682 39.130 0.00 0.00 41.13 4.41
1723 3878 2.034066 CATGGCCACAAGGTCCGT 59.966 61.111 8.16 0.00 39.40 4.69
1745 3903 1.630244 CTAATCCTATGCCGCTGCGC 61.630 60.000 18.00 12.80 41.78 6.09
1783 3944 7.333423 TCGCATACATTTTATGGCTAGATAACC 59.667 37.037 0.00 0.00 33.60 2.85
1829 3993 0.036952 TCCTTCCAGCTTTCGCTCAG 60.037 55.000 0.00 0.00 45.15 3.35
1929 4093 2.750948 GACGTAAGAAACAGCCACTCA 58.249 47.619 0.00 0.00 43.62 3.41
1934 4098 2.777832 AGAAACAGCCACTCATCTCC 57.222 50.000 0.00 0.00 0.00 3.71
1943 4107 3.006247 GCCACTCATCTCCTGTTCTTTC 58.994 50.000 0.00 0.00 0.00 2.62
1945 4109 4.841422 CCACTCATCTCCTGTTCTTTCAT 58.159 43.478 0.00 0.00 0.00 2.57
1947 4111 6.047870 CCACTCATCTCCTGTTCTTTCATAG 58.952 44.000 0.00 0.00 0.00 2.23
1948 4112 6.351711 CCACTCATCTCCTGTTCTTTCATAGT 60.352 42.308 0.00 0.00 0.00 2.12
1949 4113 7.147828 CCACTCATCTCCTGTTCTTTCATAGTA 60.148 40.741 0.00 0.00 0.00 1.82
1971 4135 1.602851 GCCTGAGCTTCAGCATGTATG 59.397 52.381 0.75 0.00 42.98 2.39
1972 4136 2.915349 CCTGAGCTTCAGCATGTATGT 58.085 47.619 0.75 0.00 42.98 2.29
1973 4137 3.742327 GCCTGAGCTTCAGCATGTATGTA 60.742 47.826 0.75 0.00 42.98 2.29
1974 4138 4.639334 CCTGAGCTTCAGCATGTATGTAT 58.361 43.478 0.75 0.00 42.98 2.29
1975 4139 5.061853 CCTGAGCTTCAGCATGTATGTATT 58.938 41.667 0.75 0.00 42.98 1.89
1976 4140 5.530171 CCTGAGCTTCAGCATGTATGTATTT 59.470 40.000 0.75 0.00 42.98 1.40
1977 4141 6.707608 CCTGAGCTTCAGCATGTATGTATTTA 59.292 38.462 0.75 0.00 42.98 1.40
1978 4142 7.389884 CCTGAGCTTCAGCATGTATGTATTTAT 59.610 37.037 0.75 0.00 42.98 1.40
1979 4143 8.091385 TGAGCTTCAGCATGTATGTATTTATG 57.909 34.615 0.75 0.00 45.16 1.90
1980 4144 7.933033 TGAGCTTCAGCATGTATGTATTTATGA 59.067 33.333 0.75 0.00 45.16 2.15
1981 4145 8.859236 AGCTTCAGCATGTATGTATTTATGAT 57.141 30.769 0.75 0.00 45.16 2.45
1982 4146 8.727910 AGCTTCAGCATGTATGTATTTATGATG 58.272 33.333 0.75 0.00 45.16 3.07
1983 4147 7.484007 GCTTCAGCATGTATGTATTTATGATGC 59.516 37.037 0.00 0.00 41.59 3.91
1984 4148 7.381766 TCAGCATGTATGTATTTATGATGCC 57.618 36.000 0.00 0.00 37.00 4.40
1985 4149 7.170277 TCAGCATGTATGTATTTATGATGCCT 58.830 34.615 0.00 0.00 37.00 4.75
1986 4150 7.120138 TCAGCATGTATGTATTTATGATGCCTG 59.880 37.037 0.00 0.00 37.00 4.85
1987 4151 7.120138 CAGCATGTATGTATTTATGATGCCTGA 59.880 37.037 0.00 0.00 36.26 3.86
1988 4152 7.666804 AGCATGTATGTATTTATGATGCCTGAA 59.333 33.333 0.00 0.00 36.26 3.02
1989 4153 7.752239 GCATGTATGTATTTATGATGCCTGAAC 59.248 37.037 0.00 0.00 30.71 3.18
1990 4154 9.006839 CATGTATGTATTTATGATGCCTGAACT 57.993 33.333 0.00 0.00 0.00 3.01
1991 4155 8.978874 TGTATGTATTTATGATGCCTGAACTT 57.021 30.769 0.00 0.00 0.00 2.66
1992 4156 9.056005 TGTATGTATTTATGATGCCTGAACTTC 57.944 33.333 0.00 0.00 0.00 3.01
1993 4157 9.056005 GTATGTATTTATGATGCCTGAACTTCA 57.944 33.333 0.00 0.00 0.00 3.02
1994 4158 7.320443 TGTATTTATGATGCCTGAACTTCAC 57.680 36.000 0.00 0.00 0.00 3.18
1995 4159 5.841957 ATTTATGATGCCTGAACTTCACC 57.158 39.130 0.00 0.00 0.00 4.02
1996 4160 2.885135 ATGATGCCTGAACTTCACCA 57.115 45.000 0.00 0.00 0.00 4.17
1997 4161 2.885135 TGATGCCTGAACTTCACCAT 57.115 45.000 0.00 0.00 0.00 3.55
1998 4162 2.439409 TGATGCCTGAACTTCACCATG 58.561 47.619 5.36 0.00 0.00 3.66
1999 4163 2.224843 TGATGCCTGAACTTCACCATGT 60.225 45.455 5.36 0.00 0.00 3.21
2000 4164 3.008923 TGATGCCTGAACTTCACCATGTA 59.991 43.478 5.36 0.00 0.00 2.29
2001 4165 3.719268 TGCCTGAACTTCACCATGTAT 57.281 42.857 0.00 0.00 0.00 2.29
2002 4166 4.835284 TGCCTGAACTTCACCATGTATA 57.165 40.909 0.00 0.00 0.00 1.47
2003 4167 5.372343 TGCCTGAACTTCACCATGTATAT 57.628 39.130 0.00 0.00 0.00 0.86
2004 4168 5.368145 TGCCTGAACTTCACCATGTATATC 58.632 41.667 0.00 0.00 0.00 1.63
2005 4169 4.757149 GCCTGAACTTCACCATGTATATCC 59.243 45.833 0.00 0.00 0.00 2.59
2006 4170 5.687441 GCCTGAACTTCACCATGTATATCCA 60.687 44.000 0.00 0.00 0.00 3.41
2007 4171 5.760253 CCTGAACTTCACCATGTATATCCAC 59.240 44.000 0.00 0.00 0.00 4.02
2008 4172 5.356426 TGAACTTCACCATGTATATCCACG 58.644 41.667 0.00 0.00 0.00 4.94
2009 4173 4.336889 ACTTCACCATGTATATCCACGG 57.663 45.455 0.00 0.00 0.00 4.94
2010 4174 3.964688 ACTTCACCATGTATATCCACGGA 59.035 43.478 0.00 0.00 0.00 4.69
2011 4175 4.202223 ACTTCACCATGTATATCCACGGAC 60.202 45.833 0.00 0.00 0.00 4.79
2012 4176 2.295070 TCACCATGTATATCCACGGACG 59.705 50.000 0.00 0.00 0.00 4.79
2013 4177 2.295070 CACCATGTATATCCACGGACGA 59.705 50.000 0.00 0.00 0.00 4.20
2014 4178 2.557056 ACCATGTATATCCACGGACGAG 59.443 50.000 0.00 0.00 0.00 4.18
2015 4179 2.817844 CCATGTATATCCACGGACGAGA 59.182 50.000 0.00 0.00 0.00 4.04
2016 4180 3.366070 CCATGTATATCCACGGACGAGAC 60.366 52.174 0.00 0.00 0.00 3.36
2017 4181 3.204306 TGTATATCCACGGACGAGACT 57.796 47.619 0.00 0.00 0.00 3.24
2018 4182 3.548770 TGTATATCCACGGACGAGACTT 58.451 45.455 0.00 0.00 0.00 3.01
2019 4183 3.314357 TGTATATCCACGGACGAGACTTG 59.686 47.826 0.00 0.00 0.00 3.16
2020 4184 0.454600 TATCCACGGACGAGACTTGC 59.545 55.000 0.00 0.00 0.00 4.01
2021 4185 2.227089 ATCCACGGACGAGACTTGCC 62.227 60.000 0.00 0.00 0.00 4.52
2022 4186 2.651361 CACGGACGAGACTTGCCT 59.349 61.111 0.00 0.00 0.00 4.75
2023 4187 1.734477 CACGGACGAGACTTGCCTG 60.734 63.158 0.00 0.00 0.00 4.85
2024 4188 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
2025 4189 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
2026 4190 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
2027 4191 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
2028 4192 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
2029 4193 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
2030 4194 3.672295 GAGACTTGCCTGCTCCCCG 62.672 68.421 0.00 0.00 0.00 5.73
2038 4202 4.899239 CTGCTCCCCGCGTCCATC 62.899 72.222 4.92 0.00 43.27 3.51
2046 4210 3.554692 CGCGTCCATCCGTGCTTC 61.555 66.667 0.00 0.00 0.00 3.86
2047 4211 3.195698 GCGTCCATCCGTGCTTCC 61.196 66.667 0.00 0.00 0.00 3.46
2048 4212 2.885644 CGTCCATCCGTGCTTCCG 60.886 66.667 0.00 0.00 0.00 4.30
2049 4213 3.195698 GTCCATCCGTGCTTCCGC 61.196 66.667 0.00 0.00 0.00 5.54
2050 4214 3.700970 TCCATCCGTGCTTCCGCA 61.701 61.111 0.00 0.00 45.60 5.69
2060 4224 2.346766 TGCTTCCGCATACATGGATT 57.653 45.000 0.00 0.00 42.25 3.01
2061 4225 1.948834 TGCTTCCGCATACATGGATTG 59.051 47.619 0.00 0.00 42.25 2.67
2062 4226 2.221169 GCTTCCGCATACATGGATTGA 58.779 47.619 0.00 0.00 33.42 2.57
2063 4227 2.816087 GCTTCCGCATACATGGATTGAT 59.184 45.455 0.00 0.00 33.42 2.57
2064 4228 3.120060 GCTTCCGCATACATGGATTGATC 60.120 47.826 0.00 0.00 33.42 2.92
2065 4229 4.321718 CTTCCGCATACATGGATTGATCT 58.678 43.478 0.00 0.00 33.42 2.75
2066 4230 3.667360 TCCGCATACATGGATTGATCTG 58.333 45.455 0.00 0.00 0.00 2.90
2067 4231 3.324556 TCCGCATACATGGATTGATCTGA 59.675 43.478 0.00 0.00 0.00 3.27
2068 4232 4.019950 TCCGCATACATGGATTGATCTGAT 60.020 41.667 0.00 0.00 0.00 2.90
2069 4233 4.698780 CCGCATACATGGATTGATCTGATT 59.301 41.667 0.00 0.00 0.00 2.57
2070 4234 5.391629 CCGCATACATGGATTGATCTGATTG 60.392 44.000 0.00 0.00 0.00 2.67
2071 4235 5.410439 CGCATACATGGATTGATCTGATTGA 59.590 40.000 0.00 0.00 0.00 2.57
2072 4236 6.072893 CGCATACATGGATTGATCTGATTGAA 60.073 38.462 0.00 0.00 0.00 2.69
2073 4237 7.520937 CGCATACATGGATTGATCTGATTGAAA 60.521 37.037 0.00 0.00 0.00 2.69
2074 4238 7.594015 GCATACATGGATTGATCTGATTGAAAC 59.406 37.037 0.00 0.00 0.00 2.78
2075 4239 8.626526 CATACATGGATTGATCTGATTGAAACA 58.373 33.333 0.00 0.00 0.00 2.83
2076 4240 7.470935 ACATGGATTGATCTGATTGAAACAA 57.529 32.000 0.00 0.00 32.79 2.83
2077 4241 7.898918 ACATGGATTGATCTGATTGAAACAAA 58.101 30.769 0.00 0.00 32.33 2.83
2078 4242 8.369424 ACATGGATTGATCTGATTGAAACAAAA 58.631 29.630 0.00 0.00 32.33 2.44
2079 4243 9.378551 CATGGATTGATCTGATTGAAACAAAAT 57.621 29.630 0.00 0.00 32.33 1.82
2084 4248 8.761575 TTGATCTGATTGAAACAAAATAAGGC 57.238 30.769 0.00 0.00 0.00 4.35
2085 4249 7.322664 TGATCTGATTGAAACAAAATAAGGCC 58.677 34.615 0.00 0.00 0.00 5.19
2086 4250 6.036577 TCTGATTGAAACAAAATAAGGCCC 57.963 37.500 0.00 0.00 0.00 5.80
2087 4251 4.815269 TGATTGAAACAAAATAAGGCCCG 58.185 39.130 0.00 0.00 0.00 6.13
2088 4252 3.669251 TTGAAACAAAATAAGGCCCGG 57.331 42.857 0.00 0.00 0.00 5.73
2089 4253 1.273886 TGAAACAAAATAAGGCCCGGC 59.726 47.619 0.00 0.00 0.00 6.13
2103 4267 3.663806 CGGCCCCACCCCCTTAAA 61.664 66.667 0.00 0.00 33.26 1.52
2104 4268 2.863275 GGCCCCACCCCCTTAAAA 59.137 61.111 0.00 0.00 0.00 1.52
2105 4269 1.394557 GGCCCCACCCCCTTAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
2106 4270 0.689745 GGCCCCACCCCCTTAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
2107 4271 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
2108 4272 1.964830 GCCCCACCCCCTTAAAATCAG 60.965 57.143 0.00 0.00 0.00 2.90
2109 4273 1.643811 CCCCACCCCCTTAAAATCAGA 59.356 52.381 0.00 0.00 0.00 3.27
2110 4274 2.358195 CCCCACCCCCTTAAAATCAGAG 60.358 54.545 0.00 0.00 0.00 3.35
2111 4275 2.358195 CCCACCCCCTTAAAATCAGAGG 60.358 54.545 0.00 0.00 0.00 3.69
2123 4287 9.632638 CCTTAAAATCAGAGGGAAATGATTAGA 57.367 33.333 1.20 0.00 43.56 2.10
2132 4296 9.228949 CAGAGGGAAATGATTAGATTAGAATGG 57.771 37.037 0.00 0.00 0.00 3.16
2133 4297 9.175577 AGAGGGAAATGATTAGATTAGAATGGA 57.824 33.333 0.00 0.00 0.00 3.41
2134 4298 9.799106 GAGGGAAATGATTAGATTAGAATGGAA 57.201 33.333 0.00 0.00 0.00 3.53
2165 4329 6.920569 AAAAAGACAGTCGTAAGTTGATGT 57.079 33.333 0.00 0.00 39.48 3.06
2166 4330 5.907197 AAAGACAGTCGTAAGTTGATGTG 57.093 39.130 0.00 0.00 39.48 3.21
2167 4331 3.914312 AGACAGTCGTAAGTTGATGTGG 58.086 45.455 0.00 0.00 39.48 4.17
2168 4332 2.993899 GACAGTCGTAAGTTGATGTGGG 59.006 50.000 0.00 0.00 39.48 4.61
2169 4333 2.631062 ACAGTCGTAAGTTGATGTGGGA 59.369 45.455 0.00 0.00 39.48 4.37
2170 4334 3.254060 CAGTCGTAAGTTGATGTGGGAG 58.746 50.000 0.00 0.00 39.48 4.30
2171 4335 2.000447 GTCGTAAGTTGATGTGGGAGC 59.000 52.381 0.00 0.00 39.48 4.70
2172 4336 1.621317 TCGTAAGTTGATGTGGGAGCA 59.379 47.619 0.00 0.00 39.48 4.26
2173 4337 1.732259 CGTAAGTTGATGTGGGAGCAC 59.268 52.381 0.00 0.00 0.00 4.40
2174 4338 1.732259 GTAAGTTGATGTGGGAGCACG 59.268 52.381 0.00 0.00 0.00 5.34
2175 4339 0.606401 AAGTTGATGTGGGAGCACGG 60.606 55.000 0.00 0.00 0.00 4.94
2176 4340 1.003839 GTTGATGTGGGAGCACGGA 60.004 57.895 0.00 0.00 0.00 4.69
2177 4341 0.392998 GTTGATGTGGGAGCACGGAT 60.393 55.000 0.00 0.00 0.00 4.18
2178 4342 0.392863 TTGATGTGGGAGCACGGATG 60.393 55.000 0.00 0.00 0.00 3.51
2179 4343 1.524621 GATGTGGGAGCACGGATGG 60.525 63.158 0.00 0.00 0.00 3.51
2180 4344 1.971505 GATGTGGGAGCACGGATGGA 61.972 60.000 0.00 0.00 0.00 3.41
2181 4345 1.561769 ATGTGGGAGCACGGATGGAA 61.562 55.000 0.00 0.00 0.00 3.53
2182 4346 1.450312 GTGGGAGCACGGATGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
2183 4347 2.514824 GGGAGCACGGATGGAAGC 60.515 66.667 0.00 0.00 0.00 3.86
2184 4348 2.268920 GGAGCACGGATGGAAGCA 59.731 61.111 0.00 0.00 0.00 3.91
2185 4349 1.153086 GGAGCACGGATGGAAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
2186 4350 1.442526 GGAGCACGGATGGAAGCATG 61.443 60.000 0.00 0.00 0.00 4.06
2187 4351 1.442526 GAGCACGGATGGAAGCATGG 61.443 60.000 0.00 0.00 0.00 3.66
2188 4352 2.484062 GCACGGATGGAAGCATGGG 61.484 63.158 0.00 0.00 0.00 4.00
2189 4353 1.224315 CACGGATGGAAGCATGGGA 59.776 57.895 0.00 0.00 0.00 4.37
2190 4354 0.394216 CACGGATGGAAGCATGGGAA 60.394 55.000 0.00 0.00 0.00 3.97
2191 4355 0.107017 ACGGATGGAAGCATGGGAAG 60.107 55.000 0.00 0.00 0.00 3.46
2192 4356 0.820891 CGGATGGAAGCATGGGAAGG 60.821 60.000 0.00 0.00 0.00 3.46
2193 4357 0.468771 GGATGGAAGCATGGGAAGGG 60.469 60.000 0.00 0.00 0.00 3.95
2194 4358 0.552848 GATGGAAGCATGGGAAGGGA 59.447 55.000 0.00 0.00 0.00 4.20
2195 4359 0.554792 ATGGAAGCATGGGAAGGGAG 59.445 55.000 0.00 0.00 0.00 4.30
2196 4360 1.454663 GGAAGCATGGGAAGGGAGC 60.455 63.158 0.00 0.00 0.00 4.70
2197 4361 1.304282 GAAGCATGGGAAGGGAGCA 59.696 57.895 0.00 0.00 0.00 4.26
2198 4362 0.750911 GAAGCATGGGAAGGGAGCAG 60.751 60.000 0.00 0.00 0.00 4.24
2199 4363 1.210204 AAGCATGGGAAGGGAGCAGA 61.210 55.000 0.00 0.00 0.00 4.26
2200 4364 1.452833 GCATGGGAAGGGAGCAGAC 60.453 63.158 0.00 0.00 0.00 3.51
2201 4365 1.993653 CATGGGAAGGGAGCAGACA 59.006 57.895 0.00 0.00 0.00 3.41
2202 4366 0.329261 CATGGGAAGGGAGCAGACAA 59.671 55.000 0.00 0.00 0.00 3.18
2203 4367 0.622665 ATGGGAAGGGAGCAGACAAG 59.377 55.000 0.00 0.00 0.00 3.16
2204 4368 1.377856 GGGAAGGGAGCAGACAAGC 60.378 63.158 0.00 0.00 0.00 4.01
2205 4369 1.377856 GGAAGGGAGCAGACAAGCC 60.378 63.158 0.00 0.00 34.23 4.35
2206 4370 1.743252 GAAGGGAGCAGACAAGCCG 60.743 63.158 0.00 0.00 34.23 5.52
2207 4371 3.259633 AAGGGAGCAGACAAGCCGG 62.260 63.158 0.00 0.00 34.23 6.13
2208 4372 3.706373 GGGAGCAGACAAGCCGGA 61.706 66.667 5.05 0.00 34.23 5.14
2209 4373 2.586792 GGAGCAGACAAGCCGGAT 59.413 61.111 5.05 0.00 34.23 4.18
2210 4374 1.522580 GGAGCAGACAAGCCGGATC 60.523 63.158 5.05 0.00 34.23 3.36
2211 4375 1.522580 GAGCAGACAAGCCGGATCC 60.523 63.158 5.05 0.00 34.23 3.36
2212 4376 2.892425 GCAGACAAGCCGGATCCG 60.892 66.667 27.65 27.65 39.44 4.18
2213 4377 2.579201 CAGACAAGCCGGATCCGT 59.421 61.111 31.22 13.83 37.81 4.69
2214 4378 1.813859 CAGACAAGCCGGATCCGTA 59.186 57.895 31.22 0.00 37.81 4.02
2215 4379 0.389391 CAGACAAGCCGGATCCGTAT 59.611 55.000 31.22 17.32 37.81 3.06
2247 4411 5.567552 GCTACTTCTTGAATTGTGATGAGC 58.432 41.667 0.00 0.00 0.00 4.26
2249 4413 5.624344 ACTTCTTGAATTGTGATGAGCTG 57.376 39.130 0.00 0.00 0.00 4.24
2402 4566 1.287815 CGTGTCGGCTACAACTCCA 59.712 57.895 0.00 0.00 40.63 3.86
2442 4607 0.792356 GCGTCGACGACAGGACTAAC 60.792 60.000 39.74 15.14 43.02 2.34
2471 4636 3.003689 CGGGCTGATGACAATTGATAACC 59.996 47.826 13.59 3.98 0.00 2.85
2481 4651 6.662755 TGACAATTGATAACCTATGCTTCCT 58.337 36.000 13.59 0.00 0.00 3.36
2553 4723 0.616371 TGTCCGGGTTAACCATGGAG 59.384 55.000 28.79 14.37 41.06 3.86
2601 4771 3.118884 AGTTACGGTAATGCTGGTACCTG 60.119 47.826 14.36 14.26 39.16 4.00
2620 4791 2.426024 CTGACCGGTATTTCCTTCGAGA 59.574 50.000 7.34 0.00 0.00 4.04
2781 5010 2.750166 TGAAAAGGTCACAAGCGTTCAA 59.250 40.909 0.00 0.00 32.48 2.69
2782 5011 2.844122 AAAGGTCACAAGCGTTCAAC 57.156 45.000 0.00 0.00 0.00 3.18
2783 5012 1.745232 AAGGTCACAAGCGTTCAACA 58.255 45.000 0.00 0.00 0.00 3.33
2784 5013 1.299541 AGGTCACAAGCGTTCAACAG 58.700 50.000 0.00 0.00 0.00 3.16
2786 5015 1.873591 GGTCACAAGCGTTCAACAGAT 59.126 47.619 0.00 0.00 0.00 2.90
2787 5016 2.349817 GGTCACAAGCGTTCAACAGATG 60.350 50.000 0.00 0.00 0.00 2.90
2788 5017 2.287915 GTCACAAGCGTTCAACAGATGT 59.712 45.455 0.00 0.00 0.00 3.06
2789 5018 3.493129 GTCACAAGCGTTCAACAGATGTA 59.507 43.478 0.00 0.00 0.00 2.29
2790 5019 4.152402 GTCACAAGCGTTCAACAGATGTAT 59.848 41.667 0.00 0.00 0.00 2.29
2791 5020 5.347635 GTCACAAGCGTTCAACAGATGTATA 59.652 40.000 0.00 0.00 0.00 1.47
2792 5021 5.347635 TCACAAGCGTTCAACAGATGTATAC 59.652 40.000 0.00 0.00 0.00 1.47
2793 5022 5.348724 CACAAGCGTTCAACAGATGTATACT 59.651 40.000 4.17 0.00 0.00 2.12
2794 5023 6.530181 CACAAGCGTTCAACAGATGTATACTA 59.470 38.462 4.17 0.00 0.00 1.82
2795 5024 7.222805 CACAAGCGTTCAACAGATGTATACTAT 59.777 37.037 4.17 0.00 0.00 2.12
2831 5060 9.754382 AAATTTGAAGATGACATACATTATGGC 57.246 29.630 0.00 0.00 44.64 4.40
2877 5106 8.866970 AAAATTATGATTTTGAAATGGTGGCT 57.133 26.923 7.35 0.00 42.37 4.75
2890 5119 0.599558 GGTGGCTAGTACACACACGA 59.400 55.000 17.52 0.00 40.54 4.35
2909 5138 7.537306 ACACACGATTCACTATTAAAAATGCAC 59.463 33.333 0.00 0.00 0.00 4.57
2916 5145 9.853555 ATTCACTATTAAAAATGCACGAATTGA 57.146 25.926 0.00 0.00 0.00 2.57
2917 5146 8.894409 TCACTATTAAAAATGCACGAATTGAG 57.106 30.769 0.00 0.00 0.00 3.02
2918 5147 7.967854 TCACTATTAAAAATGCACGAATTGAGG 59.032 33.333 0.00 0.00 0.00 3.86
2919 5148 7.967854 CACTATTAAAAATGCACGAATTGAGGA 59.032 33.333 0.00 0.00 0.00 3.71
2920 5149 8.184192 ACTATTAAAAATGCACGAATTGAGGAG 58.816 33.333 0.00 0.00 0.00 3.69
2921 5150 4.853924 AAAAATGCACGAATTGAGGAGT 57.146 36.364 0.00 0.00 0.00 3.85
2922 5151 3.837213 AAATGCACGAATTGAGGAGTG 57.163 42.857 0.00 0.00 37.63 3.51
2923 5152 1.742761 ATGCACGAATTGAGGAGTGG 58.257 50.000 0.00 0.00 35.35 4.00
2924 5153 0.321564 TGCACGAATTGAGGAGTGGG 60.322 55.000 0.00 0.00 35.35 4.61
2925 5154 1.648467 GCACGAATTGAGGAGTGGGC 61.648 60.000 0.00 0.00 35.35 5.36
2926 5155 0.036010 CACGAATTGAGGAGTGGGCT 60.036 55.000 0.00 0.00 0.00 5.19
2927 5156 0.036010 ACGAATTGAGGAGTGGGCTG 60.036 55.000 0.00 0.00 0.00 4.85
2928 5157 0.036010 CGAATTGAGGAGTGGGCTGT 60.036 55.000 0.00 0.00 0.00 4.40
2929 5158 1.207089 CGAATTGAGGAGTGGGCTGTA 59.793 52.381 0.00 0.00 0.00 2.74
2930 5159 2.739932 CGAATTGAGGAGTGGGCTGTAG 60.740 54.545 0.00 0.00 0.00 2.74
2931 5160 0.543749 ATTGAGGAGTGGGCTGTAGC 59.456 55.000 0.00 0.00 41.14 3.58
2950 5179 3.818787 CAGTGGCAAGGGCGCATC 61.819 66.667 10.83 0.00 41.13 3.91
2970 5199 3.000815 TTGCAGACAAGGGTTCGAC 57.999 52.632 0.00 0.00 0.00 4.20
2971 5200 0.468226 TTGCAGACAAGGGTTCGACT 59.532 50.000 0.00 0.00 0.00 4.18
2972 5201 0.033504 TGCAGACAAGGGTTCGACTC 59.966 55.000 0.00 0.00 0.00 3.36
2973 5202 0.670854 GCAGACAAGGGTTCGACTCC 60.671 60.000 0.00 0.00 0.00 3.85
2974 5203 0.037232 CAGACAAGGGTTCGACTCCC 60.037 60.000 14.94 14.94 44.90 4.30
2988 5217 2.975536 TCCCGTCGGAGCGAATTT 59.024 55.556 14.39 0.00 37.72 1.82
2989 5218 1.153706 TCCCGTCGGAGCGAATTTC 60.154 57.895 14.39 0.00 37.72 2.17
2990 5219 2.171725 CCCGTCGGAGCGAATTTCC 61.172 63.158 14.39 0.00 37.72 3.13
2991 5220 1.153628 CCGTCGGAGCGAATTTCCT 60.154 57.895 4.91 0.00 37.72 3.36
2992 5221 0.101759 CCGTCGGAGCGAATTTCCTA 59.898 55.000 4.91 0.00 37.72 2.94
2993 5222 1.478137 CGTCGGAGCGAATTTCCTAG 58.522 55.000 0.00 0.00 37.72 3.02
2994 5223 1.065102 CGTCGGAGCGAATTTCCTAGA 59.935 52.381 0.00 0.00 37.72 2.43
2995 5224 2.287668 CGTCGGAGCGAATTTCCTAGAT 60.288 50.000 0.00 0.00 37.72 1.98
2996 5225 3.310246 GTCGGAGCGAATTTCCTAGATC 58.690 50.000 0.00 0.00 37.72 2.75
2997 5226 3.004944 GTCGGAGCGAATTTCCTAGATCT 59.995 47.826 0.00 0.00 37.72 2.75
2998 5227 3.253677 TCGGAGCGAATTTCCTAGATCTC 59.746 47.826 0.00 0.00 31.06 2.75
2999 5228 3.004839 CGGAGCGAATTTCCTAGATCTCA 59.995 47.826 0.00 0.00 32.34 3.27
3000 5229 4.321601 CGGAGCGAATTTCCTAGATCTCAT 60.322 45.833 0.00 0.00 32.34 2.90
3001 5230 5.167845 GGAGCGAATTTCCTAGATCTCATC 58.832 45.833 0.00 0.00 0.00 2.92
3002 5231 5.047377 GGAGCGAATTTCCTAGATCTCATCT 60.047 44.000 0.00 0.00 43.33 2.90
3003 5232 5.782047 AGCGAATTTCCTAGATCTCATCTG 58.218 41.667 0.00 0.00 40.51 2.90
3004 5233 4.928615 GCGAATTTCCTAGATCTCATCTGG 59.071 45.833 0.00 0.00 40.51 3.86
3005 5234 5.510520 GCGAATTTCCTAGATCTCATCTGGT 60.511 44.000 0.00 0.00 40.51 4.00
3006 5235 5.925397 CGAATTTCCTAGATCTCATCTGGTG 59.075 44.000 0.00 0.00 40.51 4.17
3007 5236 5.822132 ATTTCCTAGATCTCATCTGGTGG 57.178 43.478 0.00 0.00 40.51 4.61
3008 5237 3.251016 TCCTAGATCTCATCTGGTGGG 57.749 52.381 0.00 0.00 40.51 4.61
3009 5238 1.622811 CCTAGATCTCATCTGGTGGGC 59.377 57.143 0.00 0.00 40.51 5.36
3010 5239 2.607499 CTAGATCTCATCTGGTGGGCT 58.393 52.381 0.00 0.00 40.51 5.19
3011 5240 1.890552 AGATCTCATCTGGTGGGCTT 58.109 50.000 0.00 0.00 38.44 4.35
3012 5241 1.767681 AGATCTCATCTGGTGGGCTTC 59.232 52.381 0.00 0.00 38.44 3.86
3013 5242 1.767681 GATCTCATCTGGTGGGCTTCT 59.232 52.381 0.00 0.00 0.00 2.85
3014 5243 1.661463 TCTCATCTGGTGGGCTTCTT 58.339 50.000 0.00 0.00 0.00 2.52
3015 5244 1.556911 TCTCATCTGGTGGGCTTCTTC 59.443 52.381 0.00 0.00 0.00 2.87
3016 5245 1.558756 CTCATCTGGTGGGCTTCTTCT 59.441 52.381 0.00 0.00 0.00 2.85
3017 5246 2.768527 CTCATCTGGTGGGCTTCTTCTA 59.231 50.000 0.00 0.00 0.00 2.10
3018 5247 3.387962 TCATCTGGTGGGCTTCTTCTAT 58.612 45.455 0.00 0.00 0.00 1.98
3019 5248 4.556697 TCATCTGGTGGGCTTCTTCTATA 58.443 43.478 0.00 0.00 0.00 1.31
3020 5249 4.968719 TCATCTGGTGGGCTTCTTCTATAA 59.031 41.667 0.00 0.00 0.00 0.98
3021 5250 5.428457 TCATCTGGTGGGCTTCTTCTATAAA 59.572 40.000 0.00 0.00 0.00 1.40
3022 5251 5.772393 TCTGGTGGGCTTCTTCTATAAAA 57.228 39.130 0.00 0.00 0.00 1.52
3023 5252 6.134535 TCTGGTGGGCTTCTTCTATAAAAA 57.865 37.500 0.00 0.00 0.00 1.94
3024 5253 6.731467 TCTGGTGGGCTTCTTCTATAAAAAT 58.269 36.000 0.00 0.00 0.00 1.82
3025 5254 7.867921 TCTGGTGGGCTTCTTCTATAAAAATA 58.132 34.615 0.00 0.00 0.00 1.40
3026 5255 8.502738 TCTGGTGGGCTTCTTCTATAAAAATAT 58.497 33.333 0.00 0.00 0.00 1.28
3027 5256 8.463930 TGGTGGGCTTCTTCTATAAAAATATG 57.536 34.615 0.00 0.00 0.00 1.78
3028 5257 8.058847 TGGTGGGCTTCTTCTATAAAAATATGT 58.941 33.333 0.00 0.00 0.00 2.29
3029 5258 8.568794 GGTGGGCTTCTTCTATAAAAATATGTC 58.431 37.037 0.00 0.00 0.00 3.06
3030 5259 8.568794 GTGGGCTTCTTCTATAAAAATATGTCC 58.431 37.037 0.00 0.00 0.00 4.02
3031 5260 8.502738 TGGGCTTCTTCTATAAAAATATGTCCT 58.497 33.333 0.00 0.00 0.00 3.85
3032 5261 8.787852 GGGCTTCTTCTATAAAAATATGTCCTG 58.212 37.037 0.00 0.00 0.00 3.86
3033 5262 9.561069 GGCTTCTTCTATAAAAATATGTCCTGA 57.439 33.333 0.00 0.00 0.00 3.86
3037 5266 9.547753 TCTTCTATAAAAATATGTCCTGAGTGC 57.452 33.333 0.00 0.00 0.00 4.40
3038 5267 9.553064 CTTCTATAAAAATATGTCCTGAGTGCT 57.447 33.333 0.00 0.00 0.00 4.40
3041 5270 9.988815 CTATAAAAATATGTCCTGAGTGCTAGT 57.011 33.333 0.00 0.00 0.00 2.57
3042 5271 6.992063 AAAAATATGTCCTGAGTGCTAGTG 57.008 37.500 0.00 0.00 0.00 2.74
3043 5272 3.742433 ATATGTCCTGAGTGCTAGTGC 57.258 47.619 0.00 0.00 40.20 4.40
3044 5273 0.539051 ATGTCCTGAGTGCTAGTGCC 59.461 55.000 0.00 0.00 38.71 5.01
3045 5274 1.219393 GTCCTGAGTGCTAGTGCCC 59.781 63.158 0.00 0.00 38.71 5.36
3046 5275 1.079256 TCCTGAGTGCTAGTGCCCT 59.921 57.895 0.00 0.00 38.71 5.19
3047 5276 0.545309 TCCTGAGTGCTAGTGCCCTT 60.545 55.000 0.00 0.00 38.71 3.95
3048 5277 0.392193 CCTGAGTGCTAGTGCCCTTG 60.392 60.000 0.00 0.00 38.71 3.61
3049 5278 0.392193 CTGAGTGCTAGTGCCCTTGG 60.392 60.000 0.00 0.00 38.71 3.61
3050 5279 0.835971 TGAGTGCTAGTGCCCTTGGA 60.836 55.000 0.00 0.00 38.71 3.53
3051 5280 0.543749 GAGTGCTAGTGCCCTTGGAT 59.456 55.000 0.00 0.00 38.71 3.41
3052 5281 0.543749 AGTGCTAGTGCCCTTGGATC 59.456 55.000 0.00 0.00 38.71 3.36
3053 5282 0.543749 GTGCTAGTGCCCTTGGATCT 59.456 55.000 0.00 0.00 38.71 2.75
3054 5283 0.833287 TGCTAGTGCCCTTGGATCTC 59.167 55.000 0.00 0.00 38.71 2.75
3055 5284 0.833287 GCTAGTGCCCTTGGATCTCA 59.167 55.000 0.00 0.00 0.00 3.27
3056 5285 1.419387 GCTAGTGCCCTTGGATCTCAT 59.581 52.381 0.00 0.00 0.00 2.90
3057 5286 2.158696 GCTAGTGCCCTTGGATCTCATT 60.159 50.000 0.00 0.00 0.00 2.57
3058 5287 3.686691 GCTAGTGCCCTTGGATCTCATTT 60.687 47.826 0.00 0.00 0.00 2.32
3059 5288 3.463048 AGTGCCCTTGGATCTCATTTT 57.537 42.857 0.00 0.00 0.00 1.82
3060 5289 3.782992 AGTGCCCTTGGATCTCATTTTT 58.217 40.909 0.00 0.00 0.00 1.94
3261 5490 4.222588 CCAAAATTCCCTACTCATTTGGCA 59.777 41.667 2.52 0.00 40.00 4.92
3287 5516 7.710044 ACACTTTATTATCATCTCACTGCTCTG 59.290 37.037 0.00 0.00 0.00 3.35
3296 5526 1.204467 CTCACTGCTCTGGAACCTCTC 59.796 57.143 0.00 0.00 0.00 3.20
3300 5530 0.322975 TGCTCTGGAACCTCTCTTGC 59.677 55.000 0.00 0.00 0.00 4.01
3321 5551 4.578516 TGCGTTTTCTTTCTTCTCCATTCA 59.421 37.500 0.00 0.00 0.00 2.57
3334 5564 6.712547 TCTTCTCCATTCAACTTCTCCTTTTC 59.287 38.462 0.00 0.00 0.00 2.29
3341 5571 7.123247 CCATTCAACTTCTCCTTTTCATGGTAT 59.877 37.037 0.00 0.00 0.00 2.73
3353 5583 9.527157 TCCTTTTCATGGTATTCTTTTATCACA 57.473 29.630 0.00 0.00 0.00 3.58
3403 5633 3.415212 CTTGGGATTCTTCTCTTGTGCA 58.585 45.455 0.00 0.00 0.00 4.57
3407 5637 3.626670 GGGATTCTTCTCTTGTGCATCAG 59.373 47.826 0.00 0.00 0.00 2.90
3417 5647 5.046376 TCTCTTGTGCATCAGAATAACTCCA 60.046 40.000 0.00 0.00 0.00 3.86
3418 5648 5.748402 TCTTGTGCATCAGAATAACTCCAT 58.252 37.500 0.00 0.00 0.00 3.41
3421 5651 6.484364 TGTGCATCAGAATAACTCCATAGA 57.516 37.500 0.00 0.00 0.00 1.98
3453 5683 6.821160 CCTTGTGAAAACAAATAAAAGGGTGT 59.179 34.615 0.00 0.00 31.30 4.16
3470 5700 3.490761 GGGTGTGGGAATGCGATAAAATG 60.491 47.826 0.00 0.00 0.00 2.32
3487 5717 9.467258 CGATAAAATGCATGAAAATCCTAACAT 57.533 29.630 0.00 0.00 0.00 2.71
3511 5741 4.657075 TTTTTCTCGAATACGGACAAGC 57.343 40.909 0.00 0.00 40.21 4.01
3512 5742 3.306917 TTTCTCGAATACGGACAAGCA 57.693 42.857 0.00 0.00 40.21 3.91
3513 5743 3.520290 TTCTCGAATACGGACAAGCAT 57.480 42.857 0.00 0.00 40.21 3.79
3514 5744 2.809446 TCTCGAATACGGACAAGCATG 58.191 47.619 0.00 0.00 40.21 4.06
3515 5745 1.258982 CTCGAATACGGACAAGCATGC 59.741 52.381 10.51 10.51 40.21 4.06
3516 5746 0.043053 CGAATACGGACAAGCATGCG 60.043 55.000 13.01 0.84 35.72 4.73
3517 5747 1.006832 GAATACGGACAAGCATGCGT 58.993 50.000 13.01 6.07 0.00 5.24
3518 5748 2.198406 GAATACGGACAAGCATGCGTA 58.802 47.619 13.01 7.68 33.89 4.42
3519 5749 2.526304 ATACGGACAAGCATGCGTAT 57.474 45.000 13.01 13.72 35.08 3.06
3520 5750 1.847818 TACGGACAAGCATGCGTATC 58.152 50.000 13.01 7.85 0.00 2.24
3521 5751 0.108377 ACGGACAAGCATGCGTATCA 60.108 50.000 13.85 0.00 0.00 2.15
3522 5752 1.220529 CGGACAAGCATGCGTATCAT 58.779 50.000 13.85 0.00 35.31 2.45
3523 5753 1.599071 CGGACAAGCATGCGTATCATT 59.401 47.619 13.85 0.00 31.79 2.57
3524 5754 2.348872 CGGACAAGCATGCGTATCATTC 60.349 50.000 13.85 4.45 31.79 2.67
3525 5755 2.613595 GGACAAGCATGCGTATCATTCA 59.386 45.455 13.85 0.00 31.79 2.57
3526 5756 3.251729 GGACAAGCATGCGTATCATTCAT 59.748 43.478 13.85 0.00 31.79 2.57
3527 5757 4.261322 GGACAAGCATGCGTATCATTCATT 60.261 41.667 13.85 0.00 31.79 2.57
3528 5758 5.049474 GGACAAGCATGCGTATCATTCATTA 60.049 40.000 13.85 0.00 31.79 1.90
3529 5759 5.993891 ACAAGCATGCGTATCATTCATTAG 58.006 37.500 13.01 0.00 31.79 1.73
3530 5760 5.759763 ACAAGCATGCGTATCATTCATTAGA 59.240 36.000 13.01 0.00 31.79 2.10
3531 5761 6.073385 ACAAGCATGCGTATCATTCATTAGAG 60.073 38.462 13.01 0.00 31.79 2.43
3532 5762 5.787380 AGCATGCGTATCATTCATTAGAGA 58.213 37.500 13.01 0.00 31.79 3.10
3533 5763 6.226052 AGCATGCGTATCATTCATTAGAGAA 58.774 36.000 13.01 0.00 31.79 2.87
3534 5764 6.368243 AGCATGCGTATCATTCATTAGAGAAG 59.632 38.462 13.01 0.00 31.79 2.85
3535 5765 6.401903 GCATGCGTATCATTCATTAGAGAAGG 60.402 42.308 0.00 0.00 31.79 3.46
3536 5766 6.161855 TGCGTATCATTCATTAGAGAAGGT 57.838 37.500 0.00 0.00 31.69 3.50
3537 5767 5.985530 TGCGTATCATTCATTAGAGAAGGTG 59.014 40.000 0.00 0.00 31.69 4.00
3538 5768 5.406780 GCGTATCATTCATTAGAGAAGGTGG 59.593 44.000 0.00 0.00 31.69 4.61
3539 5769 5.928839 CGTATCATTCATTAGAGAAGGTGGG 59.071 44.000 0.00 0.00 31.69 4.61
3540 5770 6.239317 CGTATCATTCATTAGAGAAGGTGGGA 60.239 42.308 0.00 0.00 31.69 4.37
3541 5771 5.620738 TCATTCATTAGAGAAGGTGGGAG 57.379 43.478 0.00 0.00 31.69 4.30
3542 5772 5.280499 TCATTCATTAGAGAAGGTGGGAGA 58.720 41.667 0.00 0.00 31.69 3.71
3543 5773 5.365025 TCATTCATTAGAGAAGGTGGGAGAG 59.635 44.000 0.00 0.00 31.69 3.20
3544 5774 4.609866 TCATTAGAGAAGGTGGGAGAGA 57.390 45.455 0.00 0.00 0.00 3.10
3545 5775 4.282496 TCATTAGAGAAGGTGGGAGAGAC 58.718 47.826 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.735369 TCTCTTTTTCACATGCCCCTTTA 58.265 39.130 0.00 0.00 0.00 1.85
3 4 3.243359 TCTCTTTTTCACATGCCCCTT 57.757 42.857 0.00 0.00 0.00 3.95
7 8 5.633830 TGATCTTCTCTTTTTCACATGCC 57.366 39.130 0.00 0.00 0.00 4.40
8 9 7.755591 TGTATGATCTTCTCTTTTTCACATGC 58.244 34.615 0.00 0.00 0.00 4.06
9 10 9.717892 CATGTATGATCTTCTCTTTTTCACATG 57.282 33.333 0.00 0.00 0.00 3.21
10 11 9.676861 TCATGTATGATCTTCTCTTTTTCACAT 57.323 29.630 0.00 0.00 0.00 3.21
11 12 8.939929 GTCATGTATGATCTTCTCTTTTTCACA 58.060 33.333 0.00 0.00 39.30 3.58
12 13 8.394121 GGTCATGTATGATCTTCTCTTTTTCAC 58.606 37.037 0.00 0.00 39.30 3.18
13 14 8.102676 TGGTCATGTATGATCTTCTCTTTTTCA 58.897 33.333 6.67 0.00 38.71 2.69
45 46 0.394352 CCTTTTCCCCATGACCTCGG 60.394 60.000 0.00 0.00 0.00 4.63
57 58 2.587522 AGTTGCTCTTGTCCCTTTTCC 58.412 47.619 0.00 0.00 0.00 3.13
112 113 0.245539 CAAGGACATGCAAGCCAAGG 59.754 55.000 0.00 0.00 0.00 3.61
144 154 4.426313 CCCAAACCTCCTCCGCCC 62.426 72.222 0.00 0.00 0.00 6.13
145 155 3.327404 TCCCAAACCTCCTCCGCC 61.327 66.667 0.00 0.00 0.00 6.13
230 242 4.262592 GCTTGATGACTCCCCAACATTTTT 60.263 41.667 0.00 0.00 0.00 1.94
233 245 2.225091 TGCTTGATGACTCCCCAACATT 60.225 45.455 0.00 0.00 0.00 2.71
236 248 1.168714 GTGCTTGATGACTCCCCAAC 58.831 55.000 0.00 0.00 0.00 3.77
281 293 7.894376 AATCAGGTTATTTTCTTACGAACGA 57.106 32.000 0.14 0.00 0.00 3.85
343 357 6.870439 TCAGAATATGTAAATGATCTCGCTGG 59.130 38.462 0.00 0.00 0.00 4.85
529 543 5.391416 GGAAAGTGCAAGAGAATTCTACAGC 60.391 44.000 8.25 12.53 31.96 4.40
531 545 5.620206 TGGAAAGTGCAAGAGAATTCTACA 58.380 37.500 8.25 1.99 31.96 2.74
570 584 5.807011 GGAAGTGGCTTGCAATTAATTAGTG 59.193 40.000 0.00 0.00 32.10 2.74
688 712 4.184629 ACTCAGTGCGATACATTTCCTTC 58.815 43.478 0.00 0.00 0.00 3.46
750 775 7.783090 ATGCACTTCTACACAATCTAATGAG 57.217 36.000 0.00 0.00 0.00 2.90
769 794 6.583562 ACTAGAAAGGGTGTTCTATATGCAC 58.416 40.000 0.00 0.00 38.96 4.57
771 796 7.042658 CGAAACTAGAAAGGGTGTTCTATATGC 60.043 40.741 0.00 0.00 38.96 3.14
772 797 7.042658 GCGAAACTAGAAAGGGTGTTCTATATG 60.043 40.741 0.00 0.00 38.96 1.78
773 798 6.985059 GCGAAACTAGAAAGGGTGTTCTATAT 59.015 38.462 0.00 0.00 38.96 0.86
774 799 6.071221 TGCGAAACTAGAAAGGGTGTTCTATA 60.071 38.462 0.00 0.00 38.96 1.31
775 800 5.176592 GCGAAACTAGAAAGGGTGTTCTAT 58.823 41.667 0.00 0.00 38.96 1.98
776 801 4.039488 TGCGAAACTAGAAAGGGTGTTCTA 59.961 41.667 0.00 0.00 38.75 2.10
777 802 3.181458 TGCGAAACTAGAAAGGGTGTTCT 60.181 43.478 0.00 0.00 40.89 3.01
778 803 3.135994 TGCGAAACTAGAAAGGGTGTTC 58.864 45.455 0.00 0.00 0.00 3.18
780 805 2.922740 TGCGAAACTAGAAAGGGTGT 57.077 45.000 0.00 0.00 0.00 4.16
790 815 1.424403 CGTGTGTCCATGCGAAACTA 58.576 50.000 6.20 0.00 28.99 2.24
791 816 1.841663 GCGTGTGTCCATGCGAAACT 61.842 55.000 6.20 0.00 43.26 2.66
818 843 8.998277 AACTAGAATTACTCCATGTCTAGCTA 57.002 34.615 12.00 0.00 40.89 3.32
959 984 5.211174 TGATCAATGAGCAGAGGATGTAG 57.789 43.478 0.00 0.00 0.00 2.74
960 985 5.279859 GGATGATCAATGAGCAGAGGATGTA 60.280 44.000 7.42 0.00 29.44 2.29
961 986 4.505215 GGATGATCAATGAGCAGAGGATGT 60.505 45.833 7.42 0.00 29.44 3.06
972 1008 1.973515 CCTCCTCCGGATGATCAATGA 59.026 52.381 3.57 0.00 0.00 2.57
982 1018 0.549169 ATGGTTTTCCCTCCTCCGGA 60.549 55.000 2.93 2.93 39.73 5.14
992 1028 3.770040 GGGCGGCCATGGTTTTCC 61.770 66.667 25.33 9.52 41.14 3.13
1147 3277 0.326264 AGGCTGTCCACCATGAACTC 59.674 55.000 0.00 0.00 33.74 3.01
1296 3426 3.942115 CGAAACCCAAAACCCAAAAACAT 59.058 39.130 0.00 0.00 0.00 2.71
1297 3427 3.335579 CGAAACCCAAAACCCAAAAACA 58.664 40.909 0.00 0.00 0.00 2.83
1298 3428 2.678836 CCGAAACCCAAAACCCAAAAAC 59.321 45.455 0.00 0.00 0.00 2.43
1360 3494 2.627699 TCGTATCAGCATCAGCACCATA 59.372 45.455 0.00 0.00 45.49 2.74
1380 3516 2.752903 ACAAGCCAATATCCCAACGTTC 59.247 45.455 0.00 0.00 0.00 3.95
1431 3573 3.050275 GCCTCCACGGTGTTCAGC 61.050 66.667 7.45 0.92 34.25 4.26
1434 3576 2.617274 GCAAGCCTCCACGGTGTTC 61.617 63.158 7.45 0.00 34.25 3.18
1514 3669 3.260100 CAGGGCCAGGGGTGAAGT 61.260 66.667 6.18 0.00 0.00 3.01
1549 3704 5.614324 ACCAACAACAGCTAGCTATCATA 57.386 39.130 18.86 0.00 0.00 2.15
1550 3705 4.494091 ACCAACAACAGCTAGCTATCAT 57.506 40.909 18.86 0.46 0.00 2.45
1582 3737 3.317711 TGCAGTTGATGAAACCGAAATGT 59.682 39.130 0.00 0.00 39.85 2.71
1604 3759 2.815945 CCATCGCCAGCTCCTCCAT 61.816 63.158 0.00 0.00 0.00 3.41
1723 3878 2.609491 CGCAGCGGCATAGGATTAGTAA 60.609 50.000 7.00 0.00 41.24 2.24
1745 3903 3.436700 TGTATGCGACTGATACCACAG 57.563 47.619 0.00 0.00 42.78 3.66
1829 3993 1.405821 CATCTGTCTGTCTCCCGTACC 59.594 57.143 0.00 0.00 0.00 3.34
1917 4081 1.701847 ACAGGAGATGAGTGGCTGTTT 59.298 47.619 0.00 0.00 0.00 2.83
1929 4093 6.328672 AGGCATACTATGAAAGAACAGGAGAT 59.671 38.462 0.00 0.00 0.00 2.75
1934 4098 5.236047 GCTCAGGCATACTATGAAAGAACAG 59.764 44.000 0.00 0.00 38.54 3.16
1943 4107 3.065655 GCTGAAGCTCAGGCATACTATG 58.934 50.000 12.98 0.00 44.43 2.23
1945 4109 2.110578 TGCTGAAGCTCAGGCATACTA 58.889 47.619 12.98 0.00 44.43 1.82
1947 4111 1.602851 CATGCTGAAGCTCAGGCATAC 59.397 52.381 16.18 2.07 44.43 2.39
1948 4112 1.211212 ACATGCTGAAGCTCAGGCATA 59.789 47.619 16.18 0.00 44.43 3.14
1949 4113 0.034380 ACATGCTGAAGCTCAGGCAT 60.034 50.000 12.43 12.43 44.43 4.40
1971 4135 6.318648 TGGTGAAGTTCAGGCATCATAAATAC 59.681 38.462 5.62 0.00 0.00 1.89
1972 4136 6.422333 TGGTGAAGTTCAGGCATCATAAATA 58.578 36.000 5.62 0.00 0.00 1.40
1973 4137 5.263599 TGGTGAAGTTCAGGCATCATAAAT 58.736 37.500 5.62 0.00 0.00 1.40
1974 4138 4.661222 TGGTGAAGTTCAGGCATCATAAA 58.339 39.130 5.62 0.00 0.00 1.40
1975 4139 4.299586 TGGTGAAGTTCAGGCATCATAA 57.700 40.909 5.62 0.00 0.00 1.90
1976 4140 3.998913 TGGTGAAGTTCAGGCATCATA 57.001 42.857 5.62 0.00 0.00 2.15
1977 4141 2.885135 TGGTGAAGTTCAGGCATCAT 57.115 45.000 5.62 0.00 0.00 2.45
1978 4142 2.224843 ACATGGTGAAGTTCAGGCATCA 60.225 45.455 5.62 1.00 0.00 3.07
1979 4143 2.440409 ACATGGTGAAGTTCAGGCATC 58.560 47.619 5.62 0.00 0.00 3.91
1980 4144 2.592102 ACATGGTGAAGTTCAGGCAT 57.408 45.000 5.62 0.00 0.00 4.40
1981 4145 3.719268 ATACATGGTGAAGTTCAGGCA 57.281 42.857 5.62 0.00 0.00 4.75
1982 4146 4.757149 GGATATACATGGTGAAGTTCAGGC 59.243 45.833 5.62 0.00 0.00 4.85
1983 4147 5.760253 GTGGATATACATGGTGAAGTTCAGG 59.240 44.000 5.62 0.00 0.00 3.86
1984 4148 5.463392 CGTGGATATACATGGTGAAGTTCAG 59.537 44.000 5.62 0.00 0.00 3.02
1985 4149 5.356426 CGTGGATATACATGGTGAAGTTCA 58.644 41.667 0.08 0.08 0.00 3.18
1986 4150 4.750098 CCGTGGATATACATGGTGAAGTTC 59.250 45.833 17.18 0.00 41.60 3.01
1987 4151 4.407621 TCCGTGGATATACATGGTGAAGTT 59.592 41.667 23.22 0.00 45.69 2.66
1988 4152 3.964688 TCCGTGGATATACATGGTGAAGT 59.035 43.478 23.22 0.00 45.69 3.01
1989 4153 4.307432 GTCCGTGGATATACATGGTGAAG 58.693 47.826 23.22 0.52 45.69 3.02
1990 4154 3.243602 CGTCCGTGGATATACATGGTGAA 60.244 47.826 23.22 4.16 45.69 3.18
1991 4155 2.295070 CGTCCGTGGATATACATGGTGA 59.705 50.000 23.22 4.87 45.69 4.02
1992 4156 2.295070 TCGTCCGTGGATATACATGGTG 59.705 50.000 23.22 17.30 45.69 4.17
1993 4157 2.557056 CTCGTCCGTGGATATACATGGT 59.443 50.000 23.22 0.00 45.69 3.55
1994 4158 2.817844 TCTCGTCCGTGGATATACATGG 59.182 50.000 19.08 19.08 46.66 3.66
1995 4159 3.502595 AGTCTCGTCCGTGGATATACATG 59.497 47.826 0.00 0.00 0.00 3.21
1996 4160 3.752665 AGTCTCGTCCGTGGATATACAT 58.247 45.455 0.00 0.00 0.00 2.29
1997 4161 3.204306 AGTCTCGTCCGTGGATATACA 57.796 47.619 0.00 0.00 0.00 2.29
1998 4162 3.852572 GCAAGTCTCGTCCGTGGATATAC 60.853 52.174 0.00 0.00 0.00 1.47
1999 4163 2.292569 GCAAGTCTCGTCCGTGGATATA 59.707 50.000 0.00 0.00 0.00 0.86
2000 4164 1.067212 GCAAGTCTCGTCCGTGGATAT 59.933 52.381 0.00 0.00 0.00 1.63
2001 4165 0.454600 GCAAGTCTCGTCCGTGGATA 59.545 55.000 0.00 0.00 0.00 2.59
2002 4166 1.215647 GCAAGTCTCGTCCGTGGAT 59.784 57.895 0.00 0.00 0.00 3.41
2003 4167 2.649034 GCAAGTCTCGTCCGTGGA 59.351 61.111 0.00 0.00 0.00 4.02
2004 4168 2.432628 GGCAAGTCTCGTCCGTGG 60.433 66.667 0.00 0.00 0.00 4.94
2005 4169 1.734477 CAGGCAAGTCTCGTCCGTG 60.734 63.158 0.00 0.00 0.00 4.94
2006 4170 2.651361 CAGGCAAGTCTCGTCCGT 59.349 61.111 0.00 0.00 0.00 4.69
2007 4171 2.811317 GCAGGCAAGTCTCGTCCG 60.811 66.667 0.00 0.00 0.00 4.79
2008 4172 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
2009 4173 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
2010 4174 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
2011 4175 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
2012 4176 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
2013 4177 3.710722 CGGGGAGCAGGCAAGTCT 61.711 66.667 0.00 0.00 0.00 3.24
2029 4193 3.554692 GAAGCACGGATGGACGCG 61.555 66.667 3.53 3.53 37.37 6.01
2030 4194 3.195698 GGAAGCACGGATGGACGC 61.196 66.667 0.00 0.00 37.37 5.19
2031 4195 2.885644 CGGAAGCACGGATGGACG 60.886 66.667 0.00 0.00 40.31 4.79
2043 4207 4.153655 CAGATCAATCCATGTATGCGGAAG 59.846 45.833 0.00 0.00 34.22 3.46
2044 4208 4.067192 CAGATCAATCCATGTATGCGGAA 58.933 43.478 0.00 0.00 34.22 4.30
2045 4209 3.324556 TCAGATCAATCCATGTATGCGGA 59.675 43.478 0.00 0.00 35.27 5.54
2046 4210 3.667360 TCAGATCAATCCATGTATGCGG 58.333 45.455 0.00 0.00 0.00 5.69
2047 4211 5.410439 TCAATCAGATCAATCCATGTATGCG 59.590 40.000 0.00 0.00 0.00 4.73
2048 4212 6.812879 TCAATCAGATCAATCCATGTATGC 57.187 37.500 0.00 0.00 0.00 3.14
2049 4213 8.626526 TGTTTCAATCAGATCAATCCATGTATG 58.373 33.333 0.00 0.00 0.00 2.39
2050 4214 8.756486 TGTTTCAATCAGATCAATCCATGTAT 57.244 30.769 0.00 0.00 0.00 2.29
2051 4215 8.578448 TTGTTTCAATCAGATCAATCCATGTA 57.422 30.769 0.00 0.00 0.00 2.29
2052 4216 7.470935 TTGTTTCAATCAGATCAATCCATGT 57.529 32.000 0.00 0.00 0.00 3.21
2053 4217 8.766000 TTTTGTTTCAATCAGATCAATCCATG 57.234 30.769 0.00 0.00 0.00 3.66
2058 4222 9.374838 GCCTTATTTTGTTTCAATCAGATCAAT 57.625 29.630 0.00 0.00 0.00 2.57
2059 4223 7.818930 GGCCTTATTTTGTTTCAATCAGATCAA 59.181 33.333 0.00 0.00 0.00 2.57
2060 4224 7.322664 GGCCTTATTTTGTTTCAATCAGATCA 58.677 34.615 0.00 0.00 0.00 2.92
2061 4225 6.758416 GGGCCTTATTTTGTTTCAATCAGATC 59.242 38.462 0.84 0.00 0.00 2.75
2062 4226 6.627953 CGGGCCTTATTTTGTTTCAATCAGAT 60.628 38.462 0.84 0.00 0.00 2.90
2063 4227 5.336372 CGGGCCTTATTTTGTTTCAATCAGA 60.336 40.000 0.84 0.00 0.00 3.27
2064 4228 4.864247 CGGGCCTTATTTTGTTTCAATCAG 59.136 41.667 0.84 0.00 0.00 2.90
2065 4229 4.322349 CCGGGCCTTATTTTGTTTCAATCA 60.322 41.667 0.84 0.00 0.00 2.57
2066 4230 4.180817 CCGGGCCTTATTTTGTTTCAATC 58.819 43.478 0.84 0.00 0.00 2.67
2067 4231 3.618752 GCCGGGCCTTATTTTGTTTCAAT 60.619 43.478 8.12 0.00 0.00 2.57
2068 4232 2.289133 GCCGGGCCTTATTTTGTTTCAA 60.289 45.455 8.12 0.00 0.00 2.69
2069 4233 1.273886 GCCGGGCCTTATTTTGTTTCA 59.726 47.619 8.12 0.00 0.00 2.69
2070 4234 1.404986 GGCCGGGCCTTATTTTGTTTC 60.405 52.381 30.86 0.00 46.69 2.78
2071 4235 0.611200 GGCCGGGCCTTATTTTGTTT 59.389 50.000 30.86 0.00 46.69 2.83
2072 4236 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
2073 4237 4.027884 GGCCGGGCCTTATTTTGT 57.972 55.556 30.86 0.00 46.69 2.83
2086 4250 2.523740 ATTTTAAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
2087 4251 0.689745 GATTTTAAGGGGGTGGGGCC 60.690 60.000 0.00 0.00 0.00 5.80
2088 4252 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
2089 4253 1.643811 TCTGATTTTAAGGGGGTGGGG 59.356 52.381 0.00 0.00 0.00 4.96
2090 4254 2.358195 CCTCTGATTTTAAGGGGGTGGG 60.358 54.545 0.00 0.00 30.92 4.61
2091 4255 3.018423 CCTCTGATTTTAAGGGGGTGG 57.982 52.381 0.00 0.00 30.92 4.61
2097 4261 9.632638 TCTAATCATTTCCCTCTGATTTTAAGG 57.367 33.333 3.40 0.00 41.22 2.69
2106 4270 9.228949 CCATTCTAATCTAATCATTTCCCTCTG 57.771 37.037 0.00 0.00 0.00 3.35
2107 4271 9.175577 TCCATTCTAATCTAATCATTTCCCTCT 57.824 33.333 0.00 0.00 0.00 3.69
2108 4272 9.799106 TTCCATTCTAATCTAATCATTTCCCTC 57.201 33.333 0.00 0.00 0.00 4.30
2142 4306 6.238374 CCACATCAACTTACGACTGTCTTTTT 60.238 38.462 6.21 0.00 0.00 1.94
2143 4307 5.236478 CCACATCAACTTACGACTGTCTTTT 59.764 40.000 6.21 0.00 0.00 2.27
2144 4308 4.750098 CCACATCAACTTACGACTGTCTTT 59.250 41.667 6.21 0.00 0.00 2.52
2145 4309 4.307432 CCACATCAACTTACGACTGTCTT 58.693 43.478 6.21 0.00 0.00 3.01
2146 4310 3.306088 CCCACATCAACTTACGACTGTCT 60.306 47.826 6.21 0.00 0.00 3.41
2147 4311 2.993899 CCCACATCAACTTACGACTGTC 59.006 50.000 0.00 0.00 0.00 3.51
2148 4312 2.631062 TCCCACATCAACTTACGACTGT 59.369 45.455 0.00 0.00 0.00 3.55
2149 4313 3.254060 CTCCCACATCAACTTACGACTG 58.746 50.000 0.00 0.00 0.00 3.51
2150 4314 2.353803 GCTCCCACATCAACTTACGACT 60.354 50.000 0.00 0.00 0.00 4.18
2151 4315 2.000447 GCTCCCACATCAACTTACGAC 59.000 52.381 0.00 0.00 0.00 4.34
2152 4316 1.621317 TGCTCCCACATCAACTTACGA 59.379 47.619 0.00 0.00 0.00 3.43
2153 4317 1.732259 GTGCTCCCACATCAACTTACG 59.268 52.381 0.00 0.00 41.67 3.18
2154 4318 1.732259 CGTGCTCCCACATCAACTTAC 59.268 52.381 0.00 0.00 42.17 2.34
2155 4319 1.338674 CCGTGCTCCCACATCAACTTA 60.339 52.381 0.00 0.00 42.17 2.24
2156 4320 0.606401 CCGTGCTCCCACATCAACTT 60.606 55.000 0.00 0.00 42.17 2.66
2157 4321 1.003355 CCGTGCTCCCACATCAACT 60.003 57.895 0.00 0.00 42.17 3.16
2158 4322 0.392998 ATCCGTGCTCCCACATCAAC 60.393 55.000 0.00 0.00 42.17 3.18
2159 4323 0.392863 CATCCGTGCTCCCACATCAA 60.393 55.000 0.00 0.00 42.17 2.57
2160 4324 1.221566 CATCCGTGCTCCCACATCA 59.778 57.895 0.00 0.00 42.17 3.07
2161 4325 1.524621 CCATCCGTGCTCCCACATC 60.525 63.158 0.00 0.00 42.17 3.06
2162 4326 1.561769 TTCCATCCGTGCTCCCACAT 61.562 55.000 0.00 0.00 42.17 3.21
2163 4327 2.184020 CTTCCATCCGTGCTCCCACA 62.184 60.000 0.00 0.00 42.17 4.17
2164 4328 1.450312 CTTCCATCCGTGCTCCCAC 60.450 63.158 0.00 0.00 38.62 4.61
2165 4329 2.989639 CTTCCATCCGTGCTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
2166 4330 2.514824 GCTTCCATCCGTGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
2167 4331 1.153086 ATGCTTCCATCCGTGCTCC 60.153 57.895 0.00 0.00 0.00 4.70
2168 4332 1.442526 CCATGCTTCCATCCGTGCTC 61.443 60.000 0.00 0.00 0.00 4.26
2169 4333 1.452651 CCATGCTTCCATCCGTGCT 60.453 57.895 0.00 0.00 0.00 4.40
2170 4334 2.484062 CCCATGCTTCCATCCGTGC 61.484 63.158 0.00 0.00 0.00 5.34
2171 4335 0.394216 TTCCCATGCTTCCATCCGTG 60.394 55.000 0.00 0.00 0.00 4.94
2172 4336 0.107017 CTTCCCATGCTTCCATCCGT 60.107 55.000 0.00 0.00 0.00 4.69
2173 4337 0.820891 CCTTCCCATGCTTCCATCCG 60.821 60.000 0.00 0.00 0.00 4.18
2174 4338 0.468771 CCCTTCCCATGCTTCCATCC 60.469 60.000 0.00 0.00 0.00 3.51
2175 4339 0.552848 TCCCTTCCCATGCTTCCATC 59.447 55.000 0.00 0.00 0.00 3.51
2176 4340 0.554792 CTCCCTTCCCATGCTTCCAT 59.445 55.000 0.00 0.00 0.00 3.41
2177 4341 2.001803 CTCCCTTCCCATGCTTCCA 58.998 57.895 0.00 0.00 0.00 3.53
2178 4342 1.454663 GCTCCCTTCCCATGCTTCC 60.455 63.158 0.00 0.00 0.00 3.46
2179 4343 0.750911 CTGCTCCCTTCCCATGCTTC 60.751 60.000 0.00 0.00 0.00 3.86
2180 4344 1.210204 TCTGCTCCCTTCCCATGCTT 61.210 55.000 0.00 0.00 0.00 3.91
2181 4345 1.617536 TCTGCTCCCTTCCCATGCT 60.618 57.895 0.00 0.00 0.00 3.79
2182 4346 1.452833 GTCTGCTCCCTTCCCATGC 60.453 63.158 0.00 0.00 0.00 4.06
2183 4347 0.329261 TTGTCTGCTCCCTTCCCATG 59.671 55.000 0.00 0.00 0.00 3.66
2184 4348 0.622665 CTTGTCTGCTCCCTTCCCAT 59.377 55.000 0.00 0.00 0.00 4.00
2185 4349 2.069776 CTTGTCTGCTCCCTTCCCA 58.930 57.895 0.00 0.00 0.00 4.37
2186 4350 1.377856 GCTTGTCTGCTCCCTTCCC 60.378 63.158 0.00 0.00 0.00 3.97
2187 4351 1.377856 GGCTTGTCTGCTCCCTTCC 60.378 63.158 0.00 0.00 0.00 3.46
2188 4352 1.743252 CGGCTTGTCTGCTCCCTTC 60.743 63.158 0.00 0.00 0.00 3.46
2189 4353 2.348998 CGGCTTGTCTGCTCCCTT 59.651 61.111 0.00 0.00 0.00 3.95
2190 4354 3.710722 CCGGCTTGTCTGCTCCCT 61.711 66.667 0.00 0.00 0.00 4.20
2191 4355 2.932130 GATCCGGCTTGTCTGCTCCC 62.932 65.000 0.00 0.00 0.00 4.30
2192 4356 1.522580 GATCCGGCTTGTCTGCTCC 60.523 63.158 0.00 0.00 0.00 4.70
2193 4357 1.522580 GGATCCGGCTTGTCTGCTC 60.523 63.158 0.00 0.00 0.00 4.26
2194 4358 2.586792 GGATCCGGCTTGTCTGCT 59.413 61.111 0.00 0.00 0.00 4.24
2195 4359 2.292794 TACGGATCCGGCTTGTCTGC 62.293 60.000 35.87 0.00 44.69 4.26
2196 4360 0.389391 ATACGGATCCGGCTTGTCTG 59.611 55.000 35.87 7.52 44.69 3.51
2197 4361 1.991121 TATACGGATCCGGCTTGTCT 58.009 50.000 35.87 17.02 44.69 3.41
2198 4362 2.416972 GGATATACGGATCCGGCTTGTC 60.417 54.545 35.87 24.59 44.69 3.18
2199 4363 1.549170 GGATATACGGATCCGGCTTGT 59.451 52.381 35.87 18.50 44.69 3.16
2200 4364 2.295253 GGATATACGGATCCGGCTTG 57.705 55.000 35.87 10.60 44.69 4.01
2206 4370 1.544691 AGCGTGTGGATATACGGATCC 59.455 52.381 0.00 0.00 45.06 3.36
2207 4371 3.439476 AGTAGCGTGTGGATATACGGATC 59.561 47.826 0.00 0.00 41.09 3.36
2208 4372 3.418995 AGTAGCGTGTGGATATACGGAT 58.581 45.455 0.00 0.00 41.09 4.18
2209 4373 2.854963 AGTAGCGTGTGGATATACGGA 58.145 47.619 0.00 0.00 41.09 4.69
2210 4374 3.252701 AGAAGTAGCGTGTGGATATACGG 59.747 47.826 0.00 0.00 41.09 4.02
2211 4375 4.485024 AGAAGTAGCGTGTGGATATACG 57.515 45.455 0.00 0.00 43.26 3.06
2212 4376 5.828747 TCAAGAAGTAGCGTGTGGATATAC 58.171 41.667 0.00 0.00 0.00 1.47
2213 4377 6.459670 TTCAAGAAGTAGCGTGTGGATATA 57.540 37.500 0.00 0.00 0.00 0.86
2214 4378 5.339008 TTCAAGAAGTAGCGTGTGGATAT 57.661 39.130 0.00 0.00 0.00 1.63
2215 4379 4.794278 TTCAAGAAGTAGCGTGTGGATA 57.206 40.909 0.00 0.00 0.00 2.59
2247 4411 3.243068 CCCGAAGTTCTGAAACAAACCAG 60.243 47.826 0.56 0.00 37.88 4.00
2249 4413 2.034179 CCCCGAAGTTCTGAAACAAACC 59.966 50.000 0.56 0.00 37.88 3.27
2348 4512 0.802494 GCCTGTTGTACGGTTGGATG 59.198 55.000 0.00 0.00 0.00 3.51
2402 4566 1.725641 TCATTGAGCACGAAATCGCT 58.274 45.000 2.15 0.00 44.43 4.93
2523 4693 0.905357 ACCCGGACAGAAGGATGAAG 59.095 55.000 0.73 0.00 0.00 3.02
2553 4723 9.692749 TCACTTTATTATCGAGTGGAATACATC 57.307 33.333 7.65 0.00 40.80 3.06
2601 4771 2.686915 TCTCTCGAAGGAAATACCGGTC 59.313 50.000 12.40 0.00 44.74 4.79
2605 4775 3.872182 GGCTTTCTCTCGAAGGAAATACC 59.128 47.826 11.24 11.72 39.35 2.73
2608 4778 3.703001 TGGCTTTCTCTCGAAGGAAAT 57.297 42.857 11.24 0.00 32.15 2.17
2612 4782 2.421424 CCAAATGGCTTTCTCTCGAAGG 59.579 50.000 0.00 0.00 0.00 3.46
2633 4804 2.604462 CTCCATTTAGCATTTTTGGCGC 59.396 45.455 0.00 0.00 36.08 6.53
2638 4809 4.142381 GCTCGTCCTCCATTTAGCATTTTT 60.142 41.667 0.00 0.00 0.00 1.94
2754 4950 4.097892 ACGCTTGTGACCTTTTCAGATTTT 59.902 37.500 0.00 0.00 33.71 1.82
2757 4953 2.851195 ACGCTTGTGACCTTTTCAGAT 58.149 42.857 0.00 0.00 33.71 2.90
2758 4954 2.325583 ACGCTTGTGACCTTTTCAGA 57.674 45.000 0.00 0.00 33.71 3.27
2759 4955 2.354510 TGAACGCTTGTGACCTTTTCAG 59.645 45.455 0.00 0.00 33.71 3.02
2766 4995 1.295792 TCTGTTGAACGCTTGTGACC 58.704 50.000 0.00 0.00 0.00 4.02
2773 5002 8.577296 ACATATAGTATACATCTGTTGAACGCT 58.423 33.333 5.50 0.00 0.00 5.07
2774 5003 8.639428 CACATATAGTATACATCTGTTGAACGC 58.361 37.037 5.50 0.00 0.00 4.84
2851 5080 9.956640 AGCCACCATTTCAAAATCATAATTTTA 57.043 25.926 0.00 0.00 41.96 1.52
2858 5087 6.663093 TGTACTAGCCACCATTTCAAAATCAT 59.337 34.615 0.00 0.00 0.00 2.45
2877 5106 9.911138 TTTTAATAGTGAATCGTGTGTGTACTA 57.089 29.630 0.00 0.00 0.00 1.82
2890 5119 9.853555 TCAATTCGTGCATTTTTAATAGTGAAT 57.146 25.926 0.00 0.00 0.00 2.57
2909 5138 0.036010 ACAGCCCACTCCTCAATTCG 60.036 55.000 0.00 0.00 0.00 3.34
2933 5162 3.818787 GATGCGCCCTTGCCACTG 61.819 66.667 4.18 0.00 0.00 3.66
2936 5165 4.365111 AAGGATGCGCCCTTGCCA 62.365 61.111 16.05 0.00 44.41 4.92
2952 5181 0.468226 AGTCGAACCCTTGTCTGCAA 59.532 50.000 0.00 0.00 0.00 4.08
2953 5182 0.033504 GAGTCGAACCCTTGTCTGCA 59.966 55.000 0.00 0.00 0.00 4.41
2954 5183 0.670854 GGAGTCGAACCCTTGTCTGC 60.671 60.000 0.00 0.00 0.00 4.26
2955 5184 0.037232 GGGAGTCGAACCCTTGTCTG 60.037 60.000 18.26 0.00 43.65 3.51
2956 5185 1.533469 CGGGAGTCGAACCCTTGTCT 61.533 60.000 21.50 0.00 44.72 3.41
2957 5186 1.080025 CGGGAGTCGAACCCTTGTC 60.080 63.158 21.50 1.65 44.72 3.18
2958 5187 1.835712 ACGGGAGTCGAACCCTTGT 60.836 57.895 21.50 13.01 44.72 3.16
2959 5188 3.057337 ACGGGAGTCGAACCCTTG 58.943 61.111 21.50 12.50 44.72 3.61
2971 5200 1.153706 GAAATTCGCTCCGACGGGA 60.154 57.895 15.25 0.00 41.08 5.14
2972 5201 2.171725 GGAAATTCGCTCCGACGGG 61.172 63.158 15.25 6.01 34.89 5.28
2973 5202 0.101759 TAGGAAATTCGCTCCGACGG 59.898 55.000 7.84 7.84 38.08 4.79
2974 5203 1.065102 TCTAGGAAATTCGCTCCGACG 59.935 52.381 0.00 0.00 38.08 5.12
2975 5204 2.865343 TCTAGGAAATTCGCTCCGAC 57.135 50.000 0.00 0.00 38.08 4.79
2976 5205 3.223435 AGATCTAGGAAATTCGCTCCGA 58.777 45.455 0.00 0.00 38.08 4.55
2977 5206 3.004839 TGAGATCTAGGAAATTCGCTCCG 59.995 47.826 0.00 0.00 38.08 4.63
2978 5207 4.592485 TGAGATCTAGGAAATTCGCTCC 57.408 45.455 0.00 0.00 0.00 4.70
2979 5208 5.863397 CAGATGAGATCTAGGAAATTCGCTC 59.137 44.000 0.00 0.00 37.58 5.03
2980 5209 5.279406 CCAGATGAGATCTAGGAAATTCGCT 60.279 44.000 0.00 0.00 37.58 4.93
2981 5210 4.928615 CCAGATGAGATCTAGGAAATTCGC 59.071 45.833 0.00 0.00 37.58 4.70
2982 5211 5.925397 CACCAGATGAGATCTAGGAAATTCG 59.075 44.000 0.00 0.00 37.58 3.34
2983 5212 6.229733 CCACCAGATGAGATCTAGGAAATTC 58.770 44.000 0.00 0.00 37.58 2.17
2984 5213 5.072872 CCCACCAGATGAGATCTAGGAAATT 59.927 44.000 0.00 0.00 37.58 1.82
2985 5214 4.596643 CCCACCAGATGAGATCTAGGAAAT 59.403 45.833 0.00 0.00 37.58 2.17
2986 5215 3.969976 CCCACCAGATGAGATCTAGGAAA 59.030 47.826 0.00 0.00 37.58 3.13
2987 5216 3.581101 CCCACCAGATGAGATCTAGGAA 58.419 50.000 0.00 0.00 37.58 3.36
2988 5217 2.757950 GCCCACCAGATGAGATCTAGGA 60.758 54.545 0.00 0.00 37.58 2.94
2989 5218 1.622811 GCCCACCAGATGAGATCTAGG 59.377 57.143 0.00 0.00 37.58 3.02
2990 5219 2.607499 AGCCCACCAGATGAGATCTAG 58.393 52.381 0.00 0.00 37.58 2.43
2991 5220 2.783379 AGCCCACCAGATGAGATCTA 57.217 50.000 0.00 0.00 37.58 1.98
2992 5221 1.767681 GAAGCCCACCAGATGAGATCT 59.232 52.381 0.00 0.00 41.15 2.75
2993 5222 1.767681 AGAAGCCCACCAGATGAGATC 59.232 52.381 0.00 0.00 0.00 2.75
2994 5223 1.890552 AGAAGCCCACCAGATGAGAT 58.109 50.000 0.00 0.00 0.00 2.75
2995 5224 1.556911 GAAGAAGCCCACCAGATGAGA 59.443 52.381 0.00 0.00 0.00 3.27
2996 5225 1.558756 AGAAGAAGCCCACCAGATGAG 59.441 52.381 0.00 0.00 0.00 2.90
2997 5226 1.661463 AGAAGAAGCCCACCAGATGA 58.339 50.000 0.00 0.00 0.00 2.92
2998 5227 3.853355 ATAGAAGAAGCCCACCAGATG 57.147 47.619 0.00 0.00 0.00 2.90
2999 5228 5.975988 TTTATAGAAGAAGCCCACCAGAT 57.024 39.130 0.00 0.00 0.00 2.90
3000 5229 5.772393 TTTTATAGAAGAAGCCCACCAGA 57.228 39.130 0.00 0.00 0.00 3.86
3001 5230 8.571336 CATATTTTTATAGAAGAAGCCCACCAG 58.429 37.037 0.00 0.00 0.00 4.00
3002 5231 8.058847 ACATATTTTTATAGAAGAAGCCCACCA 58.941 33.333 0.00 0.00 0.00 4.17
3003 5232 8.465273 ACATATTTTTATAGAAGAAGCCCACC 57.535 34.615 0.00 0.00 0.00 4.61
3004 5233 8.568794 GGACATATTTTTATAGAAGAAGCCCAC 58.431 37.037 0.00 0.00 0.00 4.61
3005 5234 8.502738 AGGACATATTTTTATAGAAGAAGCCCA 58.497 33.333 0.00 0.00 0.00 5.36
3006 5235 8.787852 CAGGACATATTTTTATAGAAGAAGCCC 58.212 37.037 0.00 0.00 0.00 5.19
3007 5236 9.561069 TCAGGACATATTTTTATAGAAGAAGCC 57.439 33.333 0.00 0.00 0.00 4.35
3011 5240 9.547753 GCACTCAGGACATATTTTTATAGAAGA 57.452 33.333 0.00 0.00 0.00 2.87
3012 5241 9.553064 AGCACTCAGGACATATTTTTATAGAAG 57.447 33.333 0.00 0.00 0.00 2.85
3015 5244 9.988815 ACTAGCACTCAGGACATATTTTTATAG 57.011 33.333 0.00 0.00 0.00 1.31
3016 5245 9.764363 CACTAGCACTCAGGACATATTTTTATA 57.236 33.333 0.00 0.00 0.00 0.98
3017 5246 7.227512 GCACTAGCACTCAGGACATATTTTTAT 59.772 37.037 0.00 0.00 41.58 1.40
3018 5247 6.538742 GCACTAGCACTCAGGACATATTTTTA 59.461 38.462 0.00 0.00 41.58 1.52
3019 5248 5.355350 GCACTAGCACTCAGGACATATTTTT 59.645 40.000 0.00 0.00 41.58 1.94
3020 5249 4.878397 GCACTAGCACTCAGGACATATTTT 59.122 41.667 0.00 0.00 41.58 1.82
3021 5250 4.446371 GCACTAGCACTCAGGACATATTT 58.554 43.478 0.00 0.00 41.58 1.40
3022 5251 3.181461 GGCACTAGCACTCAGGACATATT 60.181 47.826 0.00 0.00 44.61 1.28
3023 5252 2.366916 GGCACTAGCACTCAGGACATAT 59.633 50.000 0.00 0.00 44.61 1.78
3024 5253 1.757118 GGCACTAGCACTCAGGACATA 59.243 52.381 0.00 0.00 44.61 2.29
3025 5254 0.539051 GGCACTAGCACTCAGGACAT 59.461 55.000 0.00 0.00 44.61 3.06
3026 5255 1.544825 GGGCACTAGCACTCAGGACA 61.545 60.000 0.00 0.00 42.33 4.02
3027 5256 1.219393 GGGCACTAGCACTCAGGAC 59.781 63.158 0.00 0.00 42.33 3.85
3028 5257 3.713650 GGGCACTAGCACTCAGGA 58.286 61.111 0.00 0.00 42.33 3.86
3035 5264 0.833287 GAGATCCAAGGGCACTAGCA 59.167 55.000 0.00 0.00 44.61 3.49
3036 5265 0.833287 TGAGATCCAAGGGCACTAGC 59.167 55.000 0.00 0.00 41.10 3.42
3037 5266 3.853355 AATGAGATCCAAGGGCACTAG 57.147 47.619 0.00 0.00 0.00 2.57
3038 5267 4.591321 AAAATGAGATCCAAGGGCACTA 57.409 40.909 0.00 0.00 0.00 2.74
3039 5268 3.463048 AAAATGAGATCCAAGGGCACT 57.537 42.857 0.00 0.00 0.00 4.40
3233 5462 6.347061 AATGAGTAGGGAATTTTGGAGGAT 57.653 37.500 0.00 0.00 0.00 3.24
3261 5490 7.710044 CAGAGCAGTGAGATGATAATAAAGTGT 59.290 37.037 0.00 0.00 0.00 3.55
3287 5516 2.495084 AGAAAACGCAAGAGAGGTTCC 58.505 47.619 0.00 0.00 43.62 3.62
3300 5530 6.729187 AGTTGAATGGAGAAGAAAGAAAACG 58.271 36.000 0.00 0.00 0.00 3.60
3321 5551 8.712228 AAAGAATACCATGAAAAGGAGAAGTT 57.288 30.769 0.00 0.00 0.00 2.66
3365 5595 9.416284 GAATCCCAAGGATAAGGTGTAAAAATA 57.584 33.333 0.00 0.00 42.27 1.40
3403 5633 9.956640 GGATTTCATCTATGGAGTTATTCTGAT 57.043 33.333 0.00 0.00 0.00 2.90
3407 5637 9.566432 ACAAGGATTTCATCTATGGAGTTATTC 57.434 33.333 0.00 0.00 0.00 1.75
3453 5683 3.635836 TCATGCATTTTATCGCATTCCCA 59.364 39.130 0.00 0.00 46.49 4.37
3490 5720 4.059511 TGCTTGTCCGTATTCGAGAAAAA 58.940 39.130 0.00 0.00 39.71 1.94
3491 5721 3.655486 TGCTTGTCCGTATTCGAGAAAA 58.345 40.909 0.00 0.00 39.71 2.29
3492 5722 3.306917 TGCTTGTCCGTATTCGAGAAA 57.693 42.857 0.00 0.00 39.71 2.52
3493 5723 3.186909 CATGCTTGTCCGTATTCGAGAA 58.813 45.455 0.00 0.00 39.71 2.87
3494 5724 2.809446 CATGCTTGTCCGTATTCGAGA 58.191 47.619 0.00 0.00 39.71 4.04
3495 5725 1.258982 GCATGCTTGTCCGTATTCGAG 59.741 52.381 11.37 0.00 39.71 4.04
3496 5726 1.286501 GCATGCTTGTCCGTATTCGA 58.713 50.000 11.37 0.00 39.71 3.71
3497 5727 0.043053 CGCATGCTTGTCCGTATTCG 60.043 55.000 17.13 0.00 0.00 3.34
3498 5728 1.006832 ACGCATGCTTGTCCGTATTC 58.993 50.000 17.13 0.00 31.43 1.75
3499 5729 2.303163 TACGCATGCTTGTCCGTATT 57.697 45.000 17.13 0.00 35.36 1.89
3500 5730 2.223947 TGATACGCATGCTTGTCCGTAT 60.224 45.455 17.13 18.47 46.00 3.06
3501 5731 1.135333 TGATACGCATGCTTGTCCGTA 59.865 47.619 17.13 9.62 39.98 4.02
3502 5732 0.108377 TGATACGCATGCTTGTCCGT 60.108 50.000 17.13 7.51 37.68 4.69
3503 5733 1.220529 ATGATACGCATGCTTGTCCG 58.779 50.000 17.13 0.80 35.42 4.79
3504 5734 2.613595 TGAATGATACGCATGCTTGTCC 59.386 45.455 17.13 2.68 37.28 4.02
3505 5735 3.950087 TGAATGATACGCATGCTTGTC 57.050 42.857 17.13 14.89 37.28 3.18
3506 5736 4.906065 AATGAATGATACGCATGCTTGT 57.094 36.364 17.13 9.84 37.28 3.16
3507 5737 6.146673 TCTCTAATGAATGATACGCATGCTTG 59.853 38.462 17.13 3.27 37.28 4.01
3508 5738 6.226052 TCTCTAATGAATGATACGCATGCTT 58.774 36.000 17.13 9.37 37.28 3.91
3509 5739 5.787380 TCTCTAATGAATGATACGCATGCT 58.213 37.500 17.13 5.50 37.28 3.79
3510 5740 6.401903 CCTTCTCTAATGAATGATACGCATGC 60.402 42.308 7.91 7.91 37.28 4.06
3511 5741 6.648310 ACCTTCTCTAATGAATGATACGCATG 59.352 38.462 0.00 0.00 37.28 4.06
3512 5742 6.648310 CACCTTCTCTAATGAATGATACGCAT 59.352 38.462 0.00 0.00 39.43 4.73
3513 5743 5.985530 CACCTTCTCTAATGAATGATACGCA 59.014 40.000 0.00 0.00 0.00 5.24
3514 5744 5.406780 CCACCTTCTCTAATGAATGATACGC 59.593 44.000 0.00 0.00 0.00 4.42
3515 5745 5.928839 CCCACCTTCTCTAATGAATGATACG 59.071 44.000 0.00 0.00 0.00 3.06
3516 5746 7.015682 TCTCCCACCTTCTCTAATGAATGATAC 59.984 40.741 0.00 0.00 0.00 2.24
3517 5747 7.075797 TCTCCCACCTTCTCTAATGAATGATA 58.924 38.462 0.00 0.00 0.00 2.15
3518 5748 5.907662 TCTCCCACCTTCTCTAATGAATGAT 59.092 40.000 0.00 0.00 0.00 2.45
3519 5749 5.280499 TCTCCCACCTTCTCTAATGAATGA 58.720 41.667 0.00 0.00 0.00 2.57
3520 5750 5.365025 TCTCTCCCACCTTCTCTAATGAATG 59.635 44.000 0.00 0.00 0.00 2.67
3521 5751 5.365314 GTCTCTCCCACCTTCTCTAATGAAT 59.635 44.000 0.00 0.00 0.00 2.57
3522 5752 4.712337 GTCTCTCCCACCTTCTCTAATGAA 59.288 45.833 0.00 0.00 0.00 2.57
3523 5753 4.282496 GTCTCTCCCACCTTCTCTAATGA 58.718 47.826 0.00 0.00 0.00 2.57
3524 5754 4.664150 GTCTCTCCCACCTTCTCTAATG 57.336 50.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.