Multiple sequence alignment - TraesCS4D01G192500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G192500 chr4D 100.000 3928 0 0 1 3928 335772118 335776045 0.000000e+00 7254.0
1 TraesCS4D01G192500 chr4D 100.000 2868 0 0 4242 7109 335776359 335779226 0.000000e+00 5297.0
2 TraesCS4D01G192500 chr4D 93.631 157 7 3 2165 2319 74079349 74079504 1.540000e-56 231.0
3 TraesCS4D01G192500 chr4B 95.611 3691 118 18 248 3916 413828801 413832469 0.000000e+00 5879.0
4 TraesCS4D01G192500 chr4B 94.971 855 28 7 4242 5086 413832772 413833621 0.000000e+00 1327.0
5 TraesCS4D01G192500 chr4B 89.220 1039 49 29 5212 6218 413833619 413834626 0.000000e+00 1240.0
6 TraesCS4D01G192500 chr4B 94.898 392 10 5 6628 7014 413848892 413849278 7.890000e-169 604.0
7 TraesCS4D01G192500 chr4B 84.185 411 28 11 6240 6636 413848396 413848783 1.460000e-96 364.0
8 TraesCS4D01G192500 chr4B 89.474 114 12 0 1 114 413828394 413828507 2.070000e-30 145.0
9 TraesCS4D01G192500 chr4B 91.667 96 4 4 3138 3231 413831630 413831723 5.790000e-26 130.0
10 TraesCS4D01G192500 chr4B 90.625 96 5 4 3077 3170 413831691 413831784 2.690000e-24 124.0
11 TraesCS4D01G192500 chr4B 86.239 109 13 2 12 119 69352939 69352832 4.510000e-22 117.0
12 TraesCS4D01G192500 chr4A 90.613 2152 115 31 335 2433 137188996 137186879 0.000000e+00 2774.0
13 TraesCS4D01G192500 chr4A 96.214 1083 34 6 2476 3555 137186884 137185806 0.000000e+00 1766.0
14 TraesCS4D01G192500 chr4A 90.724 1229 62 23 5258 6453 137183277 137182068 0.000000e+00 1591.0
15 TraesCS4D01G192500 chr4A 93.592 1030 32 13 4242 5265 137185031 137184030 0.000000e+00 1506.0
16 TraesCS4D01G192500 chr4A 89.350 554 21 12 6471 7014 137181481 137180956 0.000000e+00 662.0
17 TraesCS4D01G192500 chr4A 97.319 373 7 1 3549 3921 137185706 137185337 1.300000e-176 630.0
18 TraesCS4D01G192500 chr4A 92.708 96 3 4 3138 3231 137186284 137186191 1.240000e-27 135.0
19 TraesCS4D01G192500 chr5D 93.548 155 7 3 2167 2319 175299904 175300057 1.990000e-55 228.0
20 TraesCS4D01G192500 chr5D 90.000 40 4 0 3554 3593 549469876 549469915 1.300000e-02 52.8
21 TraesCS4D01G192500 chr2D 92.949 156 9 2 2167 2321 617101061 617101215 7.180000e-55 226.0
22 TraesCS4D01G192500 chr2D 92.903 155 9 2 2167 2320 79056167 79056320 2.580000e-54 224.0
23 TraesCS4D01G192500 chr2B 92.949 156 9 2 2167 2321 190023043 190022889 7.180000e-55 226.0
24 TraesCS4D01G192500 chr2B 91.489 94 6 2 7015 7108 428960112 428960021 2.080000e-25 128.0
25 TraesCS4D01G192500 chr2B 83.193 119 20 0 1 119 396412744 396412862 7.540000e-20 110.0
26 TraesCS4D01G192500 chr5B 92.357 157 10 2 2166 2321 299602376 299602221 9.280000e-54 222.0
27 TraesCS4D01G192500 chr5B 100.000 31 0 0 3566 3596 176603825 176603795 2.770000e-04 58.4
28 TraesCS4D01G192500 chr6B 91.411 163 11 3 2163 2324 209587385 209587545 3.340000e-53 220.0
29 TraesCS4D01G192500 chr6B 91.489 94 6 2 7015 7108 148663936 148664027 2.080000e-25 128.0
30 TraesCS4D01G192500 chr6B 90.476 42 4 0 3552 3593 306798451 306798492 1.000000e-03 56.5
31 TraesCS4D01G192500 chr3B 86.555 119 16 0 1 119 655107678 655107560 1.610000e-26 132.0
32 TraesCS4D01G192500 chr3B 91.579 95 2 3 7015 7108 571539908 571539997 7.490000e-25 126.0
33 TraesCS4D01G192500 chr1D 92.553 94 2 2 7015 7108 356932464 356932552 5.790000e-26 130.0
34 TraesCS4D01G192500 chr1D 97.059 34 1 0 3562 3595 30094613 30094646 2.770000e-04 58.4
35 TraesCS4D01G192500 chr3D 92.473 93 2 2 7016 7108 580331111 580331024 2.080000e-25 128.0
36 TraesCS4D01G192500 chr7D 85.714 119 17 0 1 119 629669606 629669724 7.490000e-25 126.0
37 TraesCS4D01G192500 chr6D 92.391 92 2 2 7017 7108 243032889 243032975 7.490000e-25 126.0
38 TraesCS4D01G192500 chr6D 88.571 105 5 4 7005 7108 293177417 293177319 3.480000e-23 121.0
39 TraesCS4D01G192500 chr6D 82.353 119 21 0 1 119 471089631 471089749 3.510000e-18 104.0
40 TraesCS4D01G192500 chr1A 90.816 98 4 2 7011 7108 331019544 331019452 7.490000e-25 126.0
41 TraesCS4D01G192500 chr1A 85.849 106 15 0 10 115 302571114 302571219 5.830000e-21 113.0
42 TraesCS4D01G192500 chr3A 88.571 105 5 3 7005 7108 383856028 383856126 3.480000e-23 121.0
43 TraesCS4D01G192500 chr3A 100.000 32 0 0 3566 3597 731395136 731395105 7.700000e-05 60.2
44 TraesCS4D01G192500 chr3A 100.000 32 0 0 3566 3597 731438604 731438573 7.700000e-05 60.2
45 TraesCS4D01G192500 chr3A 100.000 29 0 0 1334 1362 219801706 219801678 4.000000e-03 54.7
46 TraesCS4D01G192500 chr7B 84.034 119 19 0 1 119 527730454 527730336 1.620000e-21 115.0
47 TraesCS4D01G192500 chr7B 92.857 42 2 1 3563 3603 693321991 693321950 7.700000e-05 60.2
48 TraesCS4D01G192500 chr5A 86.538 104 14 0 12 115 563069856 563069959 1.620000e-21 115.0
49 TraesCS4D01G192500 chr2A 90.909 44 2 2 3549 3592 153454093 153454052 2.770000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G192500 chr4D 335772118 335779226 7108 False 6275.500000 7254 100.000000 1 7109 2 chr4D.!!$F2 7108
1 TraesCS4D01G192500 chr4B 413828394 413834626 6232 False 1474.166667 5879 91.928000 1 6218 6 chr4B.!!$F1 6217
2 TraesCS4D01G192500 chr4B 413848396 413849278 882 False 484.000000 604 89.541500 6240 7014 2 chr4B.!!$F2 774
3 TraesCS4D01G192500 chr4A 137180956 137188996 8040 True 1294.857143 2774 92.931429 335 7014 7 chr4A.!!$R1 6679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.111639 TGCACCCCCTAAAGGTTGTC 59.888 55.000 0.00 0.0 34.56 3.18 F
224 225 0.325933 TGCACACATCCTCTCCCTTG 59.674 55.000 0.00 0.0 0.00 3.61 F
225 226 0.326264 GCACACATCCTCTCCCTTGT 59.674 55.000 0.00 0.0 0.00 3.16 F
575 772 0.758310 AGGCTCATGCGAGAGGATCA 60.758 55.000 7.26 0.0 41.63 2.92 F
653 850 1.000396 GTGCAAAGAGGAGGGCCAT 60.000 57.895 6.18 0.0 36.29 4.40 F
723 920 1.069500 GCGTAAAAAGTCACCGCATGT 60.069 47.619 0.00 0.0 43.53 3.21 F
1146 1375 1.081277 AACCCCTCTCCCTCTCCAC 59.919 63.158 0.00 0.0 0.00 4.02 F
2583 2826 1.438651 TGATTTCCGAAAGCTCACCG 58.561 50.000 10.31 0.0 0.00 4.94 F
2912 3156 1.171308 GCTGAAGCTCCTCATGCAAA 58.829 50.000 0.00 0.0 38.21 3.68 F
3182 3431 3.312421 CCTGCAATTAGTGTATCGTTGGG 59.688 47.826 0.00 0.0 0.00 4.12 F
5080 5446 2.857186 TGCTGCATTCTCTTACACCA 57.143 45.000 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1181 1410 1.000618 GACGAGGAAGAAAGGGAACGT 59.999 52.381 0.00 0.00 35.53 3.99 R
1290 1519 1.065854 GTGAAGGTCAGTGGGATCTGG 60.066 57.143 0.00 0.00 36.96 3.86 R
1602 1831 2.019249 CATTCATACCACAGTGGCCTG 58.981 52.381 20.48 16.49 42.67 4.85 R
2561 2804 2.030946 GGTGAGCTTTCGGAAATCATCG 59.969 50.000 3.24 0.00 0.00 3.84 R
2583 2826 9.277783 AGTATTATAGTCTTTGAATGATGTGCC 57.722 33.333 0.00 0.00 0.00 5.01 R
2745 2989 4.524802 ATTTCCTGCACCAGAATATCCA 57.475 40.909 0.00 0.00 32.44 3.41 R
2912 3156 3.362706 TCCTCGGTAGTAGAACTTGCAT 58.637 45.455 0.00 0.00 0.00 3.96 R
3561 3917 4.141574 CCCTCCGTCCCAAAATAAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15 R
4241 4597 4.985413 CAATGTTATCGCATTGTTCTGGT 58.015 39.130 9.78 0.00 46.24 4.00 R
5103 5469 0.180406 AGGGCACGCATAAAGTAGGG 59.820 55.000 0.00 0.00 0.00 3.53 R
6579 8347 0.035458 AGGAAGGAAGTTCACGGCTG 59.965 55.000 5.01 0.00 36.82 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.148825 GAGCAGGCATCGACGGGT 62.149 66.667 0.00 0.00 0.00 5.28
42 43 2.501128 CAGGCATCGACGGGTGAT 59.499 61.111 0.00 0.00 0.00 3.06
51 52 2.139917 TCGACGGGTGATGAAACAAAG 58.860 47.619 0.00 0.00 0.00 2.77
57 58 3.557054 CGGGTGATGAAACAAAGAGAGGA 60.557 47.826 0.00 0.00 0.00 3.71
62 63 4.991056 TGATGAAACAAAGAGAGGAAGACG 59.009 41.667 0.00 0.00 0.00 4.18
63 64 3.728845 TGAAACAAAGAGAGGAAGACGG 58.271 45.455 0.00 0.00 0.00 4.79
110 111 1.135689 GCACCGTTCGCATTCAATCTT 60.136 47.619 0.00 0.00 0.00 2.40
114 115 2.416547 CCGTTCGCATTCAATCTTCACT 59.583 45.455 0.00 0.00 0.00 3.41
115 116 3.410850 CGTTCGCATTCAATCTTCACTG 58.589 45.455 0.00 0.00 0.00 3.66
120 121 5.237815 TCGCATTCAATCTTCACTGTAGTT 58.762 37.500 0.00 0.00 0.00 2.24
121 122 6.394809 TCGCATTCAATCTTCACTGTAGTTA 58.605 36.000 0.00 0.00 0.00 2.24
122 123 7.041721 TCGCATTCAATCTTCACTGTAGTTAT 58.958 34.615 0.00 0.00 0.00 1.89
123 124 7.549134 TCGCATTCAATCTTCACTGTAGTTATT 59.451 33.333 0.00 0.00 0.00 1.40
124 125 8.817100 CGCATTCAATCTTCACTGTAGTTATTA 58.183 33.333 0.00 0.00 0.00 0.98
132 133 8.314143 TCTTCACTGTAGTTATTAAAAACGGG 57.686 34.615 0.00 0.00 34.46 5.28
133 134 7.933033 TCTTCACTGTAGTTATTAAAAACGGGT 59.067 33.333 0.00 0.00 34.46 5.28
157 158 3.735820 GCATGTTGACTAATGCCATGTGG 60.736 47.826 0.00 0.00 42.73 4.17
182 183 2.480642 TTTTTGCACCCCCTAAAGGT 57.519 45.000 0.00 0.00 38.48 3.50
183 184 2.480642 TTTTGCACCCCCTAAAGGTT 57.519 45.000 0.00 0.00 34.56 3.50
184 185 1.710816 TTTGCACCCCCTAAAGGTTG 58.289 50.000 0.00 0.00 34.56 3.77
185 186 0.558712 TTGCACCCCCTAAAGGTTGT 59.441 50.000 0.00 0.00 34.56 3.32
186 187 0.111639 TGCACCCCCTAAAGGTTGTC 59.888 55.000 0.00 0.00 34.56 3.18
187 188 0.404426 GCACCCCCTAAAGGTTGTCT 59.596 55.000 0.00 0.00 34.56 3.41
188 189 1.203013 GCACCCCCTAAAGGTTGTCTT 60.203 52.381 0.00 0.00 34.56 3.01
189 190 2.755208 GCACCCCCTAAAGGTTGTCTTT 60.755 50.000 0.00 0.00 46.49 2.52
190 191 3.572642 CACCCCCTAAAGGTTGTCTTTT 58.427 45.455 0.00 0.00 42.62 2.27
191 192 3.572682 CACCCCCTAAAGGTTGTCTTTTC 59.427 47.826 0.00 0.00 42.62 2.29
192 193 3.465966 ACCCCCTAAAGGTTGTCTTTTCT 59.534 43.478 0.00 0.00 42.62 2.52
193 194 4.666431 ACCCCCTAAAGGTTGTCTTTTCTA 59.334 41.667 0.00 0.00 42.62 2.10
194 195 5.315109 ACCCCCTAAAGGTTGTCTTTTCTAT 59.685 40.000 0.00 0.00 42.62 1.98
195 196 6.183361 ACCCCCTAAAGGTTGTCTTTTCTATT 60.183 38.462 0.00 0.00 42.62 1.73
196 197 6.724441 CCCCCTAAAGGTTGTCTTTTCTATTT 59.276 38.462 0.00 0.00 42.62 1.40
197 198 7.309805 CCCCCTAAAGGTTGTCTTTTCTATTTG 60.310 40.741 0.00 0.00 42.62 2.32
198 199 7.232737 CCCCTAAAGGTTGTCTTTTCTATTTGT 59.767 37.037 0.00 0.00 42.62 2.83
199 200 8.638873 CCCTAAAGGTTGTCTTTTCTATTTGTT 58.361 33.333 0.00 0.00 42.62 2.83
200 201 9.678941 CCTAAAGGTTGTCTTTTCTATTTGTTC 57.321 33.333 0.00 0.00 42.62 3.18
203 204 7.511959 AGGTTGTCTTTTCTATTTGTTCTCC 57.488 36.000 0.00 0.00 0.00 3.71
204 205 7.290813 AGGTTGTCTTTTCTATTTGTTCTCCT 58.709 34.615 0.00 0.00 0.00 3.69
205 206 7.780271 AGGTTGTCTTTTCTATTTGTTCTCCTT 59.220 33.333 0.00 0.00 0.00 3.36
206 207 7.862873 GGTTGTCTTTTCTATTTGTTCTCCTTG 59.137 37.037 0.00 0.00 0.00 3.61
207 208 6.970484 TGTCTTTTCTATTTGTTCTCCTTGC 58.030 36.000 0.00 0.00 0.00 4.01
208 209 6.545666 TGTCTTTTCTATTTGTTCTCCTTGCA 59.454 34.615 0.00 0.00 0.00 4.08
209 210 6.858478 GTCTTTTCTATTTGTTCTCCTTGCAC 59.142 38.462 0.00 0.00 0.00 4.57
210 211 6.545666 TCTTTTCTATTTGTTCTCCTTGCACA 59.454 34.615 0.00 0.00 0.00 4.57
211 212 5.689383 TTCTATTTGTTCTCCTTGCACAC 57.311 39.130 0.00 0.00 0.00 3.82
212 213 4.713553 TCTATTTGTTCTCCTTGCACACA 58.286 39.130 0.00 0.00 0.00 3.72
213 214 5.316167 TCTATTTGTTCTCCTTGCACACAT 58.684 37.500 0.00 0.00 0.00 3.21
214 215 3.988379 TTTGTTCTCCTTGCACACATC 57.012 42.857 0.00 0.00 0.00 3.06
215 216 1.896220 TGTTCTCCTTGCACACATCC 58.104 50.000 0.00 0.00 0.00 3.51
216 217 1.421268 TGTTCTCCTTGCACACATCCT 59.579 47.619 0.00 0.00 0.00 3.24
217 218 2.079925 GTTCTCCTTGCACACATCCTC 58.920 52.381 0.00 0.00 0.00 3.71
218 219 1.649321 TCTCCTTGCACACATCCTCT 58.351 50.000 0.00 0.00 0.00 3.69
219 220 1.552337 TCTCCTTGCACACATCCTCTC 59.448 52.381 0.00 0.00 0.00 3.20
220 221 0.615331 TCCTTGCACACATCCTCTCC 59.385 55.000 0.00 0.00 0.00 3.71
221 222 0.393537 CCTTGCACACATCCTCTCCC 60.394 60.000 0.00 0.00 0.00 4.30
222 223 0.617413 CTTGCACACATCCTCTCCCT 59.383 55.000 0.00 0.00 0.00 4.20
223 224 1.004044 CTTGCACACATCCTCTCCCTT 59.996 52.381 0.00 0.00 0.00 3.95
224 225 0.325933 TGCACACATCCTCTCCCTTG 59.674 55.000 0.00 0.00 0.00 3.61
225 226 0.326264 GCACACATCCTCTCCCTTGT 59.674 55.000 0.00 0.00 0.00 3.16
226 227 1.677217 GCACACATCCTCTCCCTTGTC 60.677 57.143 0.00 0.00 0.00 3.18
227 228 1.905215 CACACATCCTCTCCCTTGTCT 59.095 52.381 0.00 0.00 0.00 3.41
228 229 2.304180 CACACATCCTCTCCCTTGTCTT 59.696 50.000 0.00 0.00 0.00 3.01
229 230 2.569404 ACACATCCTCTCCCTTGTCTTC 59.431 50.000 0.00 0.00 0.00 2.87
230 231 2.093235 CACATCCTCTCCCTTGTCTTCC 60.093 54.545 0.00 0.00 0.00 3.46
231 232 2.225753 ACATCCTCTCCCTTGTCTTCCT 60.226 50.000 0.00 0.00 0.00 3.36
232 233 2.239681 TCCTCTCCCTTGTCTTCCTC 57.760 55.000 0.00 0.00 0.00 3.71
233 234 1.719378 TCCTCTCCCTTGTCTTCCTCT 59.281 52.381 0.00 0.00 0.00 3.69
234 235 2.112691 TCCTCTCCCTTGTCTTCCTCTT 59.887 50.000 0.00 0.00 0.00 2.85
235 236 2.499693 CCTCTCCCTTGTCTTCCTCTTC 59.500 54.545 0.00 0.00 0.00 2.87
236 237 3.169099 CTCTCCCTTGTCTTCCTCTTCA 58.831 50.000 0.00 0.00 0.00 3.02
237 238 2.900546 TCTCCCTTGTCTTCCTCTTCAC 59.099 50.000 0.00 0.00 0.00 3.18
238 239 1.978580 TCCCTTGTCTTCCTCTTCACC 59.021 52.381 0.00 0.00 0.00 4.02
239 240 1.981495 CCCTTGTCTTCCTCTTCACCT 59.019 52.381 0.00 0.00 0.00 4.00
240 241 2.373502 CCCTTGTCTTCCTCTTCACCTT 59.626 50.000 0.00 0.00 0.00 3.50
241 242 3.558109 CCCTTGTCTTCCTCTTCACCTTC 60.558 52.174 0.00 0.00 0.00 3.46
242 243 3.071602 CCTTGTCTTCCTCTTCACCTTCA 59.928 47.826 0.00 0.00 0.00 3.02
243 244 4.444876 CCTTGTCTTCCTCTTCACCTTCAA 60.445 45.833 0.00 0.00 0.00 2.69
244 245 4.771114 TGTCTTCCTCTTCACCTTCAAA 57.229 40.909 0.00 0.00 0.00 2.69
245 246 4.708177 TGTCTTCCTCTTCACCTTCAAAG 58.292 43.478 0.00 0.00 0.00 2.77
265 439 2.124983 CACAGTCCATCCCAGCGG 60.125 66.667 0.00 0.00 0.00 5.52
267 441 4.864334 CAGTCCATCCCAGCGGCC 62.864 72.222 0.00 0.00 0.00 6.13
377 551 2.718073 GGGAAGGAAGCGCGGACTA 61.718 63.158 8.83 0.00 0.00 2.59
392 566 2.675317 CGGACTAAGCCTTCCAGACTTG 60.675 54.545 0.00 0.00 0.00 3.16
395 569 3.997681 GACTAAGCCTTCCAGACTTGTTC 59.002 47.826 0.00 0.00 0.00 3.18
396 570 3.648545 ACTAAGCCTTCCAGACTTGTTCT 59.351 43.478 0.00 0.00 33.33 3.01
423 597 1.380650 GAAGGAGGAGGACGGAGCT 60.381 63.158 0.00 0.00 0.00 4.09
456 630 2.039787 TACCATCGCCACCCTCCA 59.960 61.111 0.00 0.00 0.00 3.86
575 772 0.758310 AGGCTCATGCGAGAGGATCA 60.758 55.000 7.26 0.00 41.63 2.92
597 794 2.034878 GGGAATGGGATGAAAGGCTTC 58.965 52.381 0.00 0.00 0.00 3.86
653 850 1.000396 GTGCAAAGAGGAGGGCCAT 60.000 57.895 6.18 0.00 36.29 4.40
682 879 9.727859 AATTAGAAGAGAGAACCTTTTTAGGAC 57.272 33.333 0.00 0.00 0.00 3.85
686 883 5.785243 AGAGAGAACCTTTTTAGGACGAAG 58.215 41.667 0.00 0.00 0.00 3.79
723 920 1.069500 GCGTAAAAAGTCACCGCATGT 60.069 47.619 0.00 0.00 43.53 3.21
777 974 2.299013 TCTAATGCAACGCGGATAGGAT 59.701 45.455 12.47 0.28 0.00 3.24
886 1104 9.834628 TTATACTCAAAATTTCAAAAGCCTACG 57.165 29.630 0.00 0.00 0.00 3.51
939 1157 7.425577 ACTTAAACAGTACCGAATGTTTACC 57.574 36.000 14.38 0.00 46.23 2.85
1116 1345 2.047296 TCAAACCTCTATCCTCCCCCTT 59.953 50.000 0.00 0.00 0.00 3.95
1140 1369 4.371231 CCCCCAACCCCTCTCCCT 62.371 72.222 0.00 0.00 0.00 4.20
1146 1375 1.081277 AACCCCTCTCCCTCTCCAC 59.919 63.158 0.00 0.00 0.00 4.02
1330 1559 3.433615 CACAATTTCTCTGTCTTCCGGTC 59.566 47.826 0.00 0.00 0.00 4.79
1571 1800 4.170468 ACAAAAGGACCACTTCTGTCAT 57.830 40.909 0.00 0.00 35.49 3.06
1572 1801 5.304686 ACAAAAGGACCACTTCTGTCATA 57.695 39.130 0.00 0.00 35.49 2.15
1602 1831 9.048446 TCATTTTACGGTAGAATGGTAAATAGC 57.952 33.333 23.34 0.00 36.39 2.97
1774 2010 6.102897 AGATCACTATGCCTATTACACACC 57.897 41.667 0.00 0.00 0.00 4.16
2086 2322 2.173569 GCCTTCCAGGATCAGGTACAAT 59.826 50.000 8.76 0.00 37.67 2.71
2561 2804 2.191128 AGAGTCACTCAACAATGGGC 57.809 50.000 7.77 0.00 32.06 5.36
2583 2826 1.438651 TGATTTCCGAAAGCTCACCG 58.561 50.000 10.31 0.00 0.00 4.94
2745 2989 8.887036 TGATGCAGACAAACTCGTATAAATAT 57.113 30.769 0.00 0.00 0.00 1.28
2912 3156 1.171308 GCTGAAGCTCCTCATGCAAA 58.829 50.000 0.00 0.00 38.21 3.68
2939 3183 4.579869 AGTTCTACTACCGAGGAACGTAA 58.420 43.478 0.00 0.00 41.72 3.18
2940 3184 4.633565 AGTTCTACTACCGAGGAACGTAAG 59.366 45.833 0.00 0.00 41.72 2.34
3182 3431 3.312421 CCTGCAATTAGTGTATCGTTGGG 59.688 47.826 0.00 0.00 0.00 4.12
3241 3490 6.260936 GCTATACCTGCATTAACACACTTCAT 59.739 38.462 0.00 0.00 0.00 2.57
3261 3510 3.569250 TTGGCTATTTTTCTTCCACGC 57.431 42.857 0.00 0.00 0.00 5.34
3427 3676 4.005650 CACAGTTGGTCAGATGCTTACAT 58.994 43.478 0.00 0.00 39.98 2.29
3472 3721 5.567430 GGAAGTGGGTTTAGAATACCTGTT 58.433 41.667 0.00 0.00 35.92 3.16
3547 3903 5.548406 ACTTGTTAGACTTGGTCATGGTAC 58.452 41.667 0.00 0.00 34.60 3.34
3921 4277 6.015010 GTCCTGTGAATGTGATAGTAGGCTAT 60.015 42.308 0.00 0.00 40.40 2.97
3922 4278 7.176865 GTCCTGTGAATGTGATAGTAGGCTATA 59.823 40.741 0.00 0.00 37.99 1.31
3923 4279 7.895962 TCCTGTGAATGTGATAGTAGGCTATAT 59.104 37.037 0.00 0.00 37.99 0.86
3924 4280 7.978414 CCTGTGAATGTGATAGTAGGCTATATG 59.022 40.741 0.00 0.00 37.99 1.78
3925 4281 7.323420 TGTGAATGTGATAGTAGGCTATATGC 58.677 38.462 0.00 0.00 37.99 3.14
4448 4809 4.085357 TGACTTGTGTAACCATGCTCTT 57.915 40.909 0.00 0.00 34.36 2.85
4576 4938 4.116961 CCATGCACAATTGGATTGATCAC 58.883 43.478 10.83 0.00 42.83 3.06
4652 5014 7.120285 GGATGATGTGACTTGAGATGAAGAAAA 59.880 37.037 0.00 0.00 0.00 2.29
4653 5015 7.806409 TGATGTGACTTGAGATGAAGAAAAA 57.194 32.000 0.00 0.00 0.00 1.94
4833 5199 7.885399 ACAATACTCTTCAATGGTTAAGCTCTT 59.115 33.333 6.19 0.00 0.00 2.85
4835 5201 9.959721 AATACTCTTCAATGGTTAAGCTCTTTA 57.040 29.630 6.19 0.00 0.00 1.85
4867 5233 7.801547 ATCATTCGTTTCATTGCTAGTTTTG 57.198 32.000 0.00 0.00 0.00 2.44
5068 5434 4.397417 GTGAAAGGTTAGATCTTGCTGCAT 59.603 41.667 1.84 0.00 0.00 3.96
5075 5441 6.051717 GGTTAGATCTTGCTGCATTCTCTTA 58.948 40.000 1.84 0.00 0.00 2.10
5076 5442 6.018343 GGTTAGATCTTGCTGCATTCTCTTAC 60.018 42.308 1.84 9.30 0.00 2.34
5077 5443 5.095145 AGATCTTGCTGCATTCTCTTACA 57.905 39.130 1.84 0.00 0.00 2.41
5078 5444 4.874966 AGATCTTGCTGCATTCTCTTACAC 59.125 41.667 1.84 0.00 0.00 2.90
5080 5446 2.857186 TGCTGCATTCTCTTACACCA 57.143 45.000 0.00 0.00 0.00 4.17
5081 5447 3.354948 TGCTGCATTCTCTTACACCAT 57.645 42.857 0.00 0.00 0.00 3.55
5082 5448 3.273434 TGCTGCATTCTCTTACACCATC 58.727 45.455 0.00 0.00 0.00 3.51
5083 5449 3.273434 GCTGCATTCTCTTACACCATCA 58.727 45.455 0.00 0.00 0.00 3.07
5084 5450 3.311871 GCTGCATTCTCTTACACCATCAG 59.688 47.826 0.00 0.00 0.00 2.90
5085 5451 4.511527 CTGCATTCTCTTACACCATCAGT 58.488 43.478 0.00 0.00 0.00 3.41
5086 5452 4.910195 TGCATTCTCTTACACCATCAGTT 58.090 39.130 0.00 0.00 0.00 3.16
5087 5453 4.937620 TGCATTCTCTTACACCATCAGTTC 59.062 41.667 0.00 0.00 0.00 3.01
5088 5454 5.181748 GCATTCTCTTACACCATCAGTTCT 58.818 41.667 0.00 0.00 0.00 3.01
5089 5455 5.064452 GCATTCTCTTACACCATCAGTTCTG 59.936 44.000 0.00 0.00 0.00 3.02
5090 5456 4.808414 TCTCTTACACCATCAGTTCTGG 57.192 45.455 0.00 0.00 39.80 3.86
5091 5457 4.416516 TCTCTTACACCATCAGTTCTGGA 58.583 43.478 0.00 0.00 37.22 3.86
5092 5458 4.220821 TCTCTTACACCATCAGTTCTGGAC 59.779 45.833 0.00 0.00 37.22 4.02
5093 5459 4.160329 TCTTACACCATCAGTTCTGGACT 58.840 43.478 0.00 0.00 39.89 3.85
5103 5469 4.569943 TCAGTTCTGGACTATGACTTTGC 58.430 43.478 0.00 0.00 36.65 3.68
5112 5478 5.486063 TGGACTATGACTTTGCCCTACTTTA 59.514 40.000 0.00 0.00 0.00 1.85
5169 5535 5.135383 AGGTTTAGGCTTTTAGTTTTCGGT 58.865 37.500 0.00 0.00 0.00 4.69
5186 5552 3.172339 TCGGTTAGGCAGGTTTACCTTA 58.828 45.455 0.00 0.00 46.09 2.69
5206 5575 8.682936 ACCTTATCTTTTGAAGCATACCATAG 57.317 34.615 0.00 0.00 0.00 2.23
5207 5576 8.275040 ACCTTATCTTTTGAAGCATACCATAGT 58.725 33.333 0.00 0.00 0.00 2.12
5208 5577 9.778741 CCTTATCTTTTGAAGCATACCATAGTA 57.221 33.333 0.00 0.00 0.00 1.82
5210 5579 9.778741 TTATCTTTTGAAGCATACCATAGTAGG 57.221 33.333 0.00 0.00 33.36 3.18
5219 5588 6.854578 AGCATACCATAGTAGGAGTAGTTCT 58.145 40.000 0.00 0.00 31.84 3.01
5284 6416 3.451402 TCTGCTTACCTGTAGAGGACA 57.549 47.619 13.94 4.43 42.93 4.02
5472 6612 1.237285 ACCATCAACAAGGTCAGCGC 61.237 55.000 0.00 0.00 30.79 5.92
5476 6616 1.508632 TCAACAAGGTCAGCGCTAAC 58.491 50.000 10.99 5.58 0.00 2.34
5481 6621 1.126846 CAAGGTCAGCGCTAACGAAAG 59.873 52.381 10.99 0.00 43.93 2.62
5527 6667 2.889522 TCTACCCCCTGCCTCTTTAT 57.110 50.000 0.00 0.00 0.00 1.40
5553 6693 3.276857 CAGGAGTATGCATTTGCTCTGT 58.723 45.455 3.54 0.66 42.66 3.41
5588 6728 1.172812 GCTTTGCTGAAGTTCCCGGT 61.173 55.000 0.00 0.00 37.69 5.28
5621 6761 2.357009 GAGGCAATGAGTTATGTGGCAG 59.643 50.000 0.00 0.00 38.91 4.85
5622 6762 1.202336 GGCAATGAGTTATGTGGCAGC 60.202 52.381 0.00 0.00 36.61 5.25
5721 6865 9.725206 TTCCCTTTAGACTTGTATATTAGGACT 57.275 33.333 0.00 0.00 0.00 3.85
5929 7074 8.690203 TTGATTAAGATTTTTGTGGACAGAGA 57.310 30.769 0.00 0.00 0.00 3.10
5948 7093 9.387123 GACAGAGAAAAGATTCATTTGTTACAC 57.613 33.333 0.00 0.00 38.06 2.90
5952 7097 5.738619 AAAGATTCATTTGTTACACCCCC 57.261 39.130 0.00 0.00 0.00 5.40
5953 7098 4.675063 AGATTCATTTGTTACACCCCCT 57.325 40.909 0.00 0.00 0.00 4.79
5954 7099 4.344104 AGATTCATTTGTTACACCCCCTG 58.656 43.478 0.00 0.00 0.00 4.45
5955 7100 1.917872 TCATTTGTTACACCCCCTGC 58.082 50.000 0.00 0.00 0.00 4.85
5956 7101 1.427368 TCATTTGTTACACCCCCTGCT 59.573 47.619 0.00 0.00 0.00 4.24
5957 7102 2.158385 TCATTTGTTACACCCCCTGCTT 60.158 45.455 0.00 0.00 0.00 3.91
5959 7104 1.698506 TTGTTACACCCCCTGCTTTG 58.301 50.000 0.00 0.00 0.00 2.77
5960 7105 0.825840 TGTTACACCCCCTGCTTTGC 60.826 55.000 0.00 0.00 0.00 3.68
5961 7106 1.228737 TTACACCCCCTGCTTTGCC 60.229 57.895 0.00 0.00 0.00 4.52
5962 7107 2.723464 TTACACCCCCTGCTTTGCCC 62.723 60.000 0.00 0.00 0.00 5.36
5969 7114 1.073722 CCTGCTTTGCCCTGTGAGA 59.926 57.895 0.00 0.00 0.00 3.27
5982 7127 2.426024 CCTGTGAGATTGCATTCCTTGG 59.574 50.000 5.00 0.00 0.00 3.61
5984 7129 1.135721 GTGAGATTGCATTCCTTGGCC 59.864 52.381 0.00 0.00 0.00 5.36
6004 7149 2.807967 CCGTGATGTGTTTGTGACTGAT 59.192 45.455 0.00 0.00 0.00 2.90
6007 7161 5.273170 CGTGATGTGTTTGTGACTGATTTT 58.727 37.500 0.00 0.00 0.00 1.82
6051 7205 3.181480 GCCAGTTTTGTGTTGCTCCTTTA 60.181 43.478 0.00 0.00 0.00 1.85
6059 7213 5.356882 TGTGTTGCTCCTTTATCTTTTCG 57.643 39.130 0.00 0.00 0.00 3.46
6060 7214 4.215399 TGTGTTGCTCCTTTATCTTTTCGG 59.785 41.667 0.00 0.00 0.00 4.30
6062 7216 4.454504 TGTTGCTCCTTTATCTTTTCGGTC 59.545 41.667 0.00 0.00 0.00 4.79
6070 7227 5.124936 CCTTTATCTTTTCGGTCGGGATTTT 59.875 40.000 0.00 0.00 0.00 1.82
6071 7228 5.554822 TTATCTTTTCGGTCGGGATTTTG 57.445 39.130 0.00 0.00 0.00 2.44
6072 7229 2.853705 TCTTTTCGGTCGGGATTTTGT 58.146 42.857 0.00 0.00 0.00 2.83
6073 7230 2.550606 TCTTTTCGGTCGGGATTTTGTG 59.449 45.455 0.00 0.00 0.00 3.33
6074 7231 1.970092 TTTCGGTCGGGATTTTGTGT 58.030 45.000 0.00 0.00 0.00 3.72
6075 7232 1.231221 TTCGGTCGGGATTTTGTGTG 58.769 50.000 0.00 0.00 0.00 3.82
6105 7262 3.003378 GTGGCTCCTGTTTTTGTCTGTAC 59.997 47.826 0.00 0.00 0.00 2.90
6107 7264 3.251004 GGCTCCTGTTTTTGTCTGTACTG 59.749 47.826 0.00 0.00 0.00 2.74
6111 7268 4.080243 TCCTGTTTTTGTCTGTACTGGGAA 60.080 41.667 0.00 0.00 32.41 3.97
6113 7270 4.204012 TGTTTTTGTCTGTACTGGGAAGG 58.796 43.478 0.00 0.00 0.00 3.46
6114 7271 3.502123 TTTTGTCTGTACTGGGAAGGG 57.498 47.619 0.00 0.00 0.00 3.95
6115 7272 2.409064 TTGTCTGTACTGGGAAGGGA 57.591 50.000 0.00 0.00 0.00 4.20
6117 7274 2.187958 TGTCTGTACTGGGAAGGGATG 58.812 52.381 0.00 0.00 0.00 3.51
6118 7275 2.225522 TGTCTGTACTGGGAAGGGATGA 60.226 50.000 0.00 0.00 0.00 2.92
6119 7276 2.838202 GTCTGTACTGGGAAGGGATGAA 59.162 50.000 0.00 0.00 0.00 2.57
6120 7277 2.838202 TCTGTACTGGGAAGGGATGAAC 59.162 50.000 0.00 0.00 0.00 3.18
6122 7279 2.838202 TGTACTGGGAAGGGATGAACTC 59.162 50.000 0.00 0.00 0.00 3.01
6124 7281 1.912043 ACTGGGAAGGGATGAACTCTG 59.088 52.381 0.00 0.00 0.00 3.35
6125 7282 1.912043 CTGGGAAGGGATGAACTCTGT 59.088 52.381 0.00 0.00 0.00 3.41
6127 7284 3.713764 CTGGGAAGGGATGAACTCTGTAT 59.286 47.826 0.00 0.00 0.00 2.29
6128 7285 3.711704 TGGGAAGGGATGAACTCTGTATC 59.288 47.826 0.00 0.00 0.00 2.24
6129 7286 3.071747 GGGAAGGGATGAACTCTGTATCC 59.928 52.174 0.00 0.00 39.69 2.59
6130 7287 3.711704 GGAAGGGATGAACTCTGTATCCA 59.288 47.826 0.00 0.00 41.69 3.41
6131 7288 4.443598 GGAAGGGATGAACTCTGTATCCAC 60.444 50.000 0.00 0.00 41.69 4.02
6158 7315 0.539051 GGTGACCACTGCTCAGCTAT 59.461 55.000 0.00 0.00 34.05 2.97
6234 7411 3.472283 AGCTATCTGCAGTTGGATCAG 57.528 47.619 14.67 0.32 45.94 2.90
6237 7414 2.328819 ATCTGCAGTTGGATCAGCTC 57.671 50.000 14.67 0.00 0.00 4.09
6238 7415 0.251354 TCTGCAGTTGGATCAGCTCC 59.749 55.000 14.67 0.00 45.19 4.70
6252 7432 2.038952 TCAGCTCCATACACTTGTGCTT 59.961 45.455 0.10 0.00 0.00 3.91
6292 7472 0.108585 TGGACCTGTTGAGTTGAGGC 59.891 55.000 0.00 0.00 0.00 4.70
6379 7566 2.444766 GGAAATCAGGGGATCATCCAGT 59.555 50.000 5.89 0.00 38.64 4.00
6385 7572 0.179073 GGGGATCATCCAGTCACACG 60.179 60.000 5.89 0.00 38.64 4.49
6443 7630 3.225235 CCTCTCTAGGCCAGGTGC 58.775 66.667 5.01 0.00 35.64 5.01
6445 7632 0.980231 CCTCTCTAGGCCAGGTGCTT 60.980 60.000 5.01 0.00 40.92 3.91
6446 7633 0.463620 CTCTCTAGGCCAGGTGCTTC 59.536 60.000 5.01 0.00 40.92 3.86
6447 7634 0.252239 TCTCTAGGCCAGGTGCTTCA 60.252 55.000 5.01 0.00 40.92 3.02
6448 7635 0.107945 CTCTAGGCCAGGTGCTTCAC 60.108 60.000 5.01 0.00 40.92 3.18
6449 7636 0.835971 TCTAGGCCAGGTGCTTCACA 60.836 55.000 5.01 0.00 40.92 3.58
6450 7637 0.036732 CTAGGCCAGGTGCTTCACAA 59.963 55.000 5.01 0.00 40.92 3.33
6451 7638 0.476338 TAGGCCAGGTGCTTCACAAA 59.524 50.000 5.01 0.00 40.92 2.83
6455 7642 1.134848 GCCAGGTGCTTCACAAAACAA 60.135 47.619 0.00 0.00 35.86 2.83
6464 7651 4.629200 TGCTTCACAAAACAAAATGGTGTC 59.371 37.500 0.00 0.00 0.00 3.67
6492 8253 2.433970 TGATGGCGATCACCTATTCACA 59.566 45.455 7.38 0.00 33.40 3.58
6493 8254 3.118445 TGATGGCGATCACCTATTCACAA 60.118 43.478 7.38 0.00 33.40 3.33
6505 8266 0.659427 ATTCACAAGATGGCGCATCG 59.341 50.000 10.83 1.83 44.67 3.84
6506 8267 0.390998 TTCACAAGATGGCGCATCGA 60.391 50.000 10.83 0.00 44.67 3.59
6576 8344 4.326826 GTCCCAAAACATCAGAGACATCA 58.673 43.478 0.00 0.00 0.00 3.07
6578 8346 5.065731 GTCCCAAAACATCAGAGACATCATC 59.934 44.000 0.00 0.00 0.00 2.92
6579 8347 4.337555 CCCAAAACATCAGAGACATCATCC 59.662 45.833 0.00 0.00 0.00 3.51
6608 8376 0.393132 CTTCCTTCCTTCCTTCCGGC 60.393 60.000 0.00 0.00 0.00 6.13
6655 8540 2.040679 TGATCCCGTCTATACCCATCGA 59.959 50.000 0.00 0.00 0.00 3.59
6656 8541 2.195741 TCCCGTCTATACCCATCGAG 57.804 55.000 0.00 0.00 0.00 4.04
6657 8542 1.422781 TCCCGTCTATACCCATCGAGT 59.577 52.381 0.00 0.00 0.00 4.18
6658 8543 1.811359 CCCGTCTATACCCATCGAGTC 59.189 57.143 0.00 0.00 0.00 3.36
6659 8544 1.463831 CCGTCTATACCCATCGAGTCG 59.536 57.143 6.09 6.09 0.00 4.18
7007 8906 4.340246 CTCCTGCCAGGTGCTGCA 62.340 66.667 11.27 0.00 42.00 4.41
7014 8913 1.002868 CCAGGTGCTGCAGTTAGCT 60.003 57.895 16.64 16.18 45.94 3.32
7015 8914 0.250234 CCAGGTGCTGCAGTTAGCTA 59.750 55.000 16.64 0.00 45.94 3.32
7016 8915 1.649664 CAGGTGCTGCAGTTAGCTAG 58.350 55.000 16.64 10.35 45.94 3.42
7017 8916 1.066573 CAGGTGCTGCAGTTAGCTAGT 60.067 52.381 16.64 0.00 45.94 2.57
7018 8917 2.166459 CAGGTGCTGCAGTTAGCTAGTA 59.834 50.000 16.64 0.00 45.94 1.82
7019 8918 2.166664 AGGTGCTGCAGTTAGCTAGTAC 59.833 50.000 16.64 0.00 45.94 2.73
7020 8919 2.166664 GGTGCTGCAGTTAGCTAGTACT 59.833 50.000 16.64 0.00 45.94 2.73
7021 8920 3.440228 GTGCTGCAGTTAGCTAGTACTC 58.560 50.000 16.64 0.00 45.94 2.59
7022 8921 2.427453 TGCTGCAGTTAGCTAGTACTCC 59.573 50.000 16.64 0.00 45.94 3.85
7023 8922 2.223852 GCTGCAGTTAGCTAGTACTCCC 60.224 54.545 16.64 0.00 45.94 4.30
7024 8923 3.292460 CTGCAGTTAGCTAGTACTCCCT 58.708 50.000 5.25 0.00 45.94 4.20
7025 8924 3.288964 TGCAGTTAGCTAGTACTCCCTC 58.711 50.000 0.00 0.00 45.94 4.30
7026 8925 2.624364 GCAGTTAGCTAGTACTCCCTCC 59.376 54.545 0.00 0.00 41.15 4.30
7027 8926 2.879646 CAGTTAGCTAGTACTCCCTCCG 59.120 54.545 0.00 0.00 0.00 4.63
7028 8927 2.509131 AGTTAGCTAGTACTCCCTCCGT 59.491 50.000 0.00 0.00 0.00 4.69
7029 8928 3.053768 AGTTAGCTAGTACTCCCTCCGTT 60.054 47.826 0.00 0.00 0.00 4.44
7030 8929 2.055684 AGCTAGTACTCCCTCCGTTC 57.944 55.000 0.00 0.00 0.00 3.95
7031 8930 1.031235 GCTAGTACTCCCTCCGTTCC 58.969 60.000 0.00 0.00 0.00 3.62
7032 8931 1.684248 GCTAGTACTCCCTCCGTTCCA 60.684 57.143 0.00 0.00 0.00 3.53
7033 8932 2.731572 CTAGTACTCCCTCCGTTCCAA 58.268 52.381 0.00 0.00 0.00 3.53
7034 8933 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
7035 8934 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
7036 8935 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
7037 8936 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
7038 8937 4.720273 AGTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
7039 8938 5.901276 AGTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
7040 8939 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
7041 8940 4.102681 ACTCCCTCCGTTCCAAAATATAGG 59.897 45.833 0.00 0.00 0.00 2.57
7042 8941 4.042174 TCCCTCCGTTCCAAAATATAGGT 58.958 43.478 0.00 0.00 0.00 3.08
7043 8942 4.102054 TCCCTCCGTTCCAAAATATAGGTC 59.898 45.833 0.00 0.00 0.00 3.85
7044 8943 4.102681 CCCTCCGTTCCAAAATATAGGTCT 59.897 45.833 0.00 0.00 0.00 3.85
7045 8944 5.397559 CCCTCCGTTCCAAAATATAGGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
7046 8945 6.120220 CCTCCGTTCCAAAATATAGGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
7047 8946 6.260271 CCTCCGTTCCAAAATATAGGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
7048 8947 6.954232 TCCGTTCCAAAATATAGGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
7049 8948 8.081517 TCCGTTCCAAAATATAGGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
7050 8949 8.202137 TCCGTTCCAAAATATAGGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
7051 8950 8.202137 CCGTTCCAAAATATAGGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
7052 8951 9.250624 CGTTCCAAAATATAGGTCTTTCTAGAG 57.749 37.037 0.00 0.00 0.00 2.43
7063 8962 9.883142 ATAGGTCTTTCTAGAGATTTCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
7064 8963 7.740805 AGGTCTTTCTAGAGATTTCAACAAGT 58.259 34.615 0.00 0.00 0.00 3.16
7065 8964 7.659390 AGGTCTTTCTAGAGATTTCAACAAGTG 59.341 37.037 0.00 0.00 0.00 3.16
7066 8965 7.657761 GGTCTTTCTAGAGATTTCAACAAGTGA 59.342 37.037 0.00 0.00 0.00 3.41
7067 8966 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
7068 8967 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
7069 8968 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
7070 8969 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
7071 8970 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
7072 8971 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
7074 8973 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
7075 8974 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
7076 8975 8.902540 AGATTTCAACAAGTGACTACATACAA 57.097 30.769 0.00 0.00 35.39 2.41
7077 8976 9.337396 AGATTTCAACAAGTGACTACATACAAA 57.663 29.630 0.00 0.00 35.39 2.83
7078 8977 9.599322 GATTTCAACAAGTGACTACATACAAAG 57.401 33.333 0.00 0.00 35.39 2.77
7079 8978 6.539649 TCAACAAGTGACTACATACAAAGC 57.460 37.500 0.00 0.00 0.00 3.51
7080 8979 6.052360 TCAACAAGTGACTACATACAAAGCA 58.948 36.000 0.00 0.00 0.00 3.91
7081 8980 6.540551 TCAACAAGTGACTACATACAAAGCAA 59.459 34.615 0.00 0.00 0.00 3.91
7082 8981 6.935741 ACAAGTGACTACATACAAAGCAAA 57.064 33.333 0.00 0.00 0.00 3.68
7083 8982 6.959361 ACAAGTGACTACATACAAAGCAAAG 58.041 36.000 0.00 0.00 0.00 2.77
7084 8983 5.613358 AGTGACTACATACAAAGCAAAGC 57.387 39.130 0.00 0.00 0.00 3.51
7085 8984 5.063204 AGTGACTACATACAAAGCAAAGCA 58.937 37.500 0.00 0.00 0.00 3.91
7086 8985 5.530915 AGTGACTACATACAAAGCAAAGCAA 59.469 36.000 0.00 0.00 0.00 3.91
7087 8986 6.039270 AGTGACTACATACAAAGCAAAGCAAA 59.961 34.615 0.00 0.00 0.00 3.68
7088 8987 6.695278 GTGACTACATACAAAGCAAAGCAAAA 59.305 34.615 0.00 0.00 0.00 2.44
7089 8988 7.382218 GTGACTACATACAAAGCAAAGCAAAAT 59.618 33.333 0.00 0.00 0.00 1.82
7090 8989 7.381948 TGACTACATACAAAGCAAAGCAAAATG 59.618 33.333 0.00 0.00 0.00 2.32
7091 8990 7.432869 ACTACATACAAAGCAAAGCAAAATGA 58.567 30.769 0.00 0.00 0.00 2.57
7092 8991 6.774354 ACATACAAAGCAAAGCAAAATGAG 57.226 33.333 0.00 0.00 0.00 2.90
7093 8992 6.282930 ACATACAAAGCAAAGCAAAATGAGT 58.717 32.000 0.00 0.00 0.00 3.41
7094 8993 6.201425 ACATACAAAGCAAAGCAAAATGAGTG 59.799 34.615 0.00 0.00 0.00 3.51
7095 8994 4.757594 ACAAAGCAAAGCAAAATGAGTGA 58.242 34.783 0.00 0.00 0.00 3.41
7096 8995 5.177326 ACAAAGCAAAGCAAAATGAGTGAA 58.823 33.333 0.00 0.00 0.00 3.18
7097 8996 5.818857 ACAAAGCAAAGCAAAATGAGTGAAT 59.181 32.000 0.00 0.00 0.00 2.57
7098 8997 6.018507 ACAAAGCAAAGCAAAATGAGTGAATC 60.019 34.615 0.00 0.00 0.00 2.52
7099 8998 5.464030 AGCAAAGCAAAATGAGTGAATCT 57.536 34.783 0.00 0.00 0.00 2.40
7100 8999 6.579666 AGCAAAGCAAAATGAGTGAATCTA 57.420 33.333 0.00 0.00 0.00 1.98
7101 9000 6.385033 AGCAAAGCAAAATGAGTGAATCTAC 58.615 36.000 0.00 0.00 0.00 2.59
7102 9001 6.016024 AGCAAAGCAAAATGAGTGAATCTACA 60.016 34.615 0.00 0.00 0.00 2.74
7103 9002 6.088616 GCAAAGCAAAATGAGTGAATCTACAC 59.911 38.462 0.00 0.00 40.60 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.698506 CTCGCCTCCTTCTCCTATGT 58.301 55.000 0.00 0.00 0.00 2.29
8 9 0.753479 CTGCTCGCCTCCTTCTCCTA 60.753 60.000 0.00 0.00 0.00 2.94
10 11 2.498726 CTGCTCGCCTCCTTCTCC 59.501 66.667 0.00 0.00 0.00 3.71
33 34 3.399330 TCTCTTTGTTTCATCACCCGTC 58.601 45.455 0.00 0.00 0.00 4.79
37 38 5.180304 GTCTTCCTCTCTTTGTTTCATCACC 59.820 44.000 0.00 0.00 0.00 4.02
39 40 4.991056 CGTCTTCCTCTCTTTGTTTCATCA 59.009 41.667 0.00 0.00 0.00 3.07
42 43 3.386726 TCCGTCTTCCTCTCTTTGTTTCA 59.613 43.478 0.00 0.00 0.00 2.69
51 52 0.179158 GTTCGCTCCGTCTTCCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
57 58 0.600255 CTGGTTGTTCGCTCCGTCTT 60.600 55.000 0.00 0.00 0.00 3.01
62 63 2.970974 GCTGCTGGTTGTTCGCTCC 61.971 63.158 0.00 0.00 0.00 4.70
63 64 2.558313 GCTGCTGGTTGTTCGCTC 59.442 61.111 0.00 0.00 0.00 5.03
110 111 6.427547 CCACCCGTTTTTAATAACTACAGTGA 59.572 38.462 0.00 0.00 0.00 3.41
114 115 5.068636 TGCCACCCGTTTTTAATAACTACA 58.931 37.500 7.12 0.00 0.00 2.74
115 116 5.625921 TGCCACCCGTTTTTAATAACTAC 57.374 39.130 7.12 0.00 0.00 2.73
120 121 4.523173 TCAACATGCCACCCGTTTTTAATA 59.477 37.500 0.00 0.00 0.00 0.98
121 122 3.322254 TCAACATGCCACCCGTTTTTAAT 59.678 39.130 0.00 0.00 0.00 1.40
122 123 2.693591 TCAACATGCCACCCGTTTTTAA 59.306 40.909 0.00 0.00 0.00 1.52
123 124 2.034812 GTCAACATGCCACCCGTTTTTA 59.965 45.455 0.00 0.00 0.00 1.52
124 125 1.115467 TCAACATGCCACCCGTTTTT 58.885 45.000 0.00 0.00 0.00 1.94
125 126 0.387565 GTCAACATGCCACCCGTTTT 59.612 50.000 0.00 0.00 0.00 2.43
126 127 0.467290 AGTCAACATGCCACCCGTTT 60.467 50.000 0.00 0.00 0.00 3.60
127 128 0.398696 TAGTCAACATGCCACCCGTT 59.601 50.000 0.00 0.00 0.00 4.44
128 129 0.398696 TTAGTCAACATGCCACCCGT 59.601 50.000 0.00 0.00 0.00 5.28
129 130 1.401552 CATTAGTCAACATGCCACCCG 59.598 52.381 0.00 0.00 0.00 5.28
130 131 1.134946 GCATTAGTCAACATGCCACCC 59.865 52.381 0.00 0.00 40.04 4.61
131 132 2.566952 GCATTAGTCAACATGCCACC 57.433 50.000 0.00 0.00 40.04 4.61
163 164 2.436173 CAACCTTTAGGGGGTGCAAAAA 59.564 45.455 0.10 0.00 37.25 1.94
164 165 2.043227 CAACCTTTAGGGGGTGCAAAA 58.957 47.619 0.10 0.00 37.25 2.44
165 166 1.710816 CAACCTTTAGGGGGTGCAAA 58.289 50.000 0.10 0.00 37.25 3.68
166 167 3.448469 CAACCTTTAGGGGGTGCAA 57.552 52.632 0.10 0.00 37.25 4.08
170 171 3.465966 AGAAAAGACAACCTTTAGGGGGT 59.534 43.478 0.10 0.00 43.90 4.95
171 172 4.114015 AGAAAAGACAACCTTTAGGGGG 57.886 45.455 0.10 0.00 43.90 5.40
172 173 7.232737 ACAAATAGAAAAGACAACCTTTAGGGG 59.767 37.037 0.10 0.00 43.90 4.79
173 174 8.178313 ACAAATAGAAAAGACAACCTTTAGGG 57.822 34.615 0.10 0.00 43.90 3.53
174 175 9.678941 GAACAAATAGAAAAGACAACCTTTAGG 57.321 33.333 0.00 0.00 43.90 2.69
177 178 8.414003 GGAGAACAAATAGAAAAGACAACCTTT 58.586 33.333 0.00 0.00 46.47 3.11
178 179 7.780271 AGGAGAACAAATAGAAAAGACAACCTT 59.220 33.333 0.00 0.00 36.47 3.50
179 180 7.290813 AGGAGAACAAATAGAAAAGACAACCT 58.709 34.615 0.00 0.00 0.00 3.50
180 181 7.511959 AGGAGAACAAATAGAAAAGACAACC 57.488 36.000 0.00 0.00 0.00 3.77
181 182 7.379797 GCAAGGAGAACAAATAGAAAAGACAAC 59.620 37.037 0.00 0.00 0.00 3.32
182 183 7.068103 TGCAAGGAGAACAAATAGAAAAGACAA 59.932 33.333 0.00 0.00 0.00 3.18
183 184 6.545666 TGCAAGGAGAACAAATAGAAAAGACA 59.454 34.615 0.00 0.00 0.00 3.41
184 185 6.858478 GTGCAAGGAGAACAAATAGAAAAGAC 59.142 38.462 0.00 0.00 0.00 3.01
185 186 6.545666 TGTGCAAGGAGAACAAATAGAAAAGA 59.454 34.615 0.00 0.00 0.00 2.52
186 187 6.638468 GTGTGCAAGGAGAACAAATAGAAAAG 59.362 38.462 0.00 0.00 0.00 2.27
187 188 6.096141 TGTGTGCAAGGAGAACAAATAGAAAA 59.904 34.615 0.00 0.00 0.00 2.29
188 189 5.592282 TGTGTGCAAGGAGAACAAATAGAAA 59.408 36.000 0.00 0.00 0.00 2.52
189 190 5.129634 TGTGTGCAAGGAGAACAAATAGAA 58.870 37.500 0.00 0.00 0.00 2.10
190 191 4.713553 TGTGTGCAAGGAGAACAAATAGA 58.286 39.130 0.00 0.00 0.00 1.98
191 192 5.392380 GGATGTGTGCAAGGAGAACAAATAG 60.392 44.000 0.00 0.00 0.00 1.73
192 193 4.458989 GGATGTGTGCAAGGAGAACAAATA 59.541 41.667 0.00 0.00 0.00 1.40
193 194 3.256631 GGATGTGTGCAAGGAGAACAAAT 59.743 43.478 0.00 0.00 0.00 2.32
194 195 2.622942 GGATGTGTGCAAGGAGAACAAA 59.377 45.455 0.00 0.00 0.00 2.83
195 196 2.158623 AGGATGTGTGCAAGGAGAACAA 60.159 45.455 0.00 0.00 0.00 2.83
196 197 1.421268 AGGATGTGTGCAAGGAGAACA 59.579 47.619 0.00 0.00 0.00 3.18
197 198 2.079925 GAGGATGTGTGCAAGGAGAAC 58.920 52.381 0.00 0.00 0.00 3.01
198 199 1.980765 AGAGGATGTGTGCAAGGAGAA 59.019 47.619 0.00 0.00 0.00 2.87
199 200 1.552337 GAGAGGATGTGTGCAAGGAGA 59.448 52.381 0.00 0.00 0.00 3.71
200 201 1.406614 GGAGAGGATGTGTGCAAGGAG 60.407 57.143 0.00 0.00 0.00 3.69
201 202 0.615331 GGAGAGGATGTGTGCAAGGA 59.385 55.000 0.00 0.00 0.00 3.36
202 203 0.393537 GGGAGAGGATGTGTGCAAGG 60.394 60.000 0.00 0.00 0.00 3.61
203 204 0.617413 AGGGAGAGGATGTGTGCAAG 59.383 55.000 0.00 0.00 0.00 4.01
204 205 1.067295 AAGGGAGAGGATGTGTGCAA 58.933 50.000 0.00 0.00 0.00 4.08
205 206 0.325933 CAAGGGAGAGGATGTGTGCA 59.674 55.000 0.00 0.00 0.00 4.57
206 207 0.326264 ACAAGGGAGAGGATGTGTGC 59.674 55.000 0.00 0.00 0.00 4.57
207 208 1.905215 AGACAAGGGAGAGGATGTGTG 59.095 52.381 0.00 0.00 0.00 3.82
208 209 2.334006 AGACAAGGGAGAGGATGTGT 57.666 50.000 0.00 0.00 0.00 3.72
209 210 2.093235 GGAAGACAAGGGAGAGGATGTG 60.093 54.545 0.00 0.00 0.00 3.21
210 211 2.192263 GGAAGACAAGGGAGAGGATGT 58.808 52.381 0.00 0.00 0.00 3.06
211 212 2.433970 GAGGAAGACAAGGGAGAGGATG 59.566 54.545 0.00 0.00 0.00 3.51
212 213 2.317594 AGAGGAAGACAAGGGAGAGGAT 59.682 50.000 0.00 0.00 0.00 3.24
213 214 1.719378 AGAGGAAGACAAGGGAGAGGA 59.281 52.381 0.00 0.00 0.00 3.71
214 215 2.246091 AGAGGAAGACAAGGGAGAGG 57.754 55.000 0.00 0.00 0.00 3.69
215 216 3.056179 GTGAAGAGGAAGACAAGGGAGAG 60.056 52.174 0.00 0.00 0.00 3.20
216 217 2.900546 GTGAAGAGGAAGACAAGGGAGA 59.099 50.000 0.00 0.00 0.00 3.71
217 218 2.027653 GGTGAAGAGGAAGACAAGGGAG 60.028 54.545 0.00 0.00 0.00 4.30
218 219 1.978580 GGTGAAGAGGAAGACAAGGGA 59.021 52.381 0.00 0.00 0.00 4.20
219 220 1.981495 AGGTGAAGAGGAAGACAAGGG 59.019 52.381 0.00 0.00 0.00 3.95
220 221 3.071602 TGAAGGTGAAGAGGAAGACAAGG 59.928 47.826 0.00 0.00 0.00 3.61
221 222 4.342862 TGAAGGTGAAGAGGAAGACAAG 57.657 45.455 0.00 0.00 0.00 3.16
222 223 4.771114 TTGAAGGTGAAGAGGAAGACAA 57.229 40.909 0.00 0.00 0.00 3.18
223 224 4.444876 CCTTTGAAGGTGAAGAGGAAGACA 60.445 45.833 1.49 0.00 41.41 3.41
224 225 4.068599 CCTTTGAAGGTGAAGAGGAAGAC 58.931 47.826 1.49 0.00 41.41 3.01
225 226 4.357918 CCTTTGAAGGTGAAGAGGAAGA 57.642 45.455 1.49 0.00 41.41 2.87
238 239 1.815003 GATGGACTGTGGCCTTTGAAG 59.185 52.381 3.32 0.00 0.00 3.02
239 240 1.547675 GGATGGACTGTGGCCTTTGAA 60.548 52.381 3.32 0.00 0.00 2.69
240 241 0.038166 GGATGGACTGTGGCCTTTGA 59.962 55.000 3.32 0.00 0.00 2.69
241 242 0.967380 GGGATGGACTGTGGCCTTTG 60.967 60.000 3.32 0.00 0.00 2.77
242 243 1.384191 GGGATGGACTGTGGCCTTT 59.616 57.895 3.32 0.00 0.00 3.11
243 244 1.852157 TGGGATGGACTGTGGCCTT 60.852 57.895 3.32 0.00 0.00 4.35
244 245 2.204136 TGGGATGGACTGTGGCCT 60.204 61.111 3.32 0.00 0.00 5.19
245 246 2.273449 CTGGGATGGACTGTGGCC 59.727 66.667 0.00 0.00 0.00 5.36
246 247 2.439156 GCTGGGATGGACTGTGGC 60.439 66.667 0.00 0.00 0.00 5.01
265 439 2.809601 ATGCTCACGACGTTCGGC 60.810 61.111 0.00 3.65 45.59 5.54
267 441 0.295763 CATCATGCTCACGACGTTCG 59.704 55.000 0.00 0.00 46.93 3.95
269 443 1.686566 CGCATCATGCTCACGACGTT 61.687 55.000 8.30 0.00 42.25 3.99
301 475 2.639065 TGTTAGAATGGTTCCATCGGC 58.361 47.619 4.72 0.00 0.00 5.54
305 479 6.330250 AGGTAGCTATGTTAGAATGGTTCCAT 59.670 38.462 0.00 0.00 0.00 3.41
392 566 0.037232 CTCCTTCCACCCGACAGAAC 60.037 60.000 0.00 0.00 0.00 3.01
395 569 1.608717 CTCCTCCTTCCACCCGACAG 61.609 65.000 0.00 0.00 0.00 3.51
396 570 1.609501 CTCCTCCTTCCACCCGACA 60.610 63.158 0.00 0.00 0.00 4.35
527 704 1.739562 GTCTTGCTCTCCCACGCTG 60.740 63.158 0.00 0.00 0.00 5.18
541 718 2.743718 CCTGTCACTGCCGGTCTT 59.256 61.111 1.90 0.00 0.00 3.01
575 772 0.262876 GCCTTTCATCCCATTCCCCT 59.737 55.000 0.00 0.00 0.00 4.79
597 794 3.975670 GTCGTCTAGCAATCTATTGGACG 59.024 47.826 18.67 18.67 44.10 4.79
702 899 4.410252 GCGGTGACTTTTTACGCG 57.590 55.556 3.53 3.53 40.84 6.01
706 903 3.252215 CCTTGACATGCGGTGACTTTTTA 59.748 43.478 0.00 0.00 0.00 1.52
723 920 0.038166 GGTGGCAGGTTGATCCTTGA 59.962 55.000 0.00 0.00 45.67 3.02
777 974 1.821216 GCTAAGGGTGTTAGCAGCAA 58.179 50.000 11.00 0.00 44.93 3.91
868 1086 7.223971 GGTTTCTTCGTAGGCTTTTGAAATTTT 59.776 33.333 0.00 0.00 0.00 1.82
886 1104 2.087646 GGCTGATGGAGTGGTTTCTTC 58.912 52.381 0.00 0.00 0.00 2.87
939 1157 4.261031 CGGAAGGGCTAAATTTGTAATCGG 60.261 45.833 0.00 0.00 0.00 4.18
1098 1327 1.061268 GGAAGGGGGAGGATAGAGGTT 60.061 57.143 0.00 0.00 0.00 3.50
1146 1375 3.866582 GTGAGAGGCGGATGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
1181 1410 1.000618 GACGAGGAAGAAAGGGAACGT 59.999 52.381 0.00 0.00 35.53 3.99
1290 1519 1.065854 GTGAAGGTCAGTGGGATCTGG 60.066 57.143 0.00 0.00 36.96 3.86
1602 1831 2.019249 CATTCATACCACAGTGGCCTG 58.981 52.381 20.48 16.49 42.67 4.85
1740 1976 5.645497 AGGCATAGTGATCTTTTGACTGAAC 59.355 40.000 0.00 0.00 0.00 3.18
1774 2010 4.280929 TGGGGAACAGATACATCGTATGAG 59.719 45.833 2.48 0.00 0.00 2.90
1907 2143 5.067273 ACGGATCATCAACCTACAACAAAA 58.933 37.500 0.00 0.00 0.00 2.44
2561 2804 2.030946 GGTGAGCTTTCGGAAATCATCG 59.969 50.000 3.24 0.00 0.00 3.84
2583 2826 9.277783 AGTATTATAGTCTTTGAATGATGTGCC 57.722 33.333 0.00 0.00 0.00 5.01
2745 2989 4.524802 ATTTCCTGCACCAGAATATCCA 57.475 40.909 0.00 0.00 32.44 3.41
2912 3156 3.362706 TCCTCGGTAGTAGAACTTGCAT 58.637 45.455 0.00 0.00 0.00 3.96
2939 3183 6.875972 ACCATATCTCCAAAGTACTGAACT 57.124 37.500 0.00 0.00 41.49 3.01
2940 3184 7.923414 AAACCATATCTCCAAAGTACTGAAC 57.077 36.000 0.00 0.00 0.00 3.18
2941 3185 8.792633 CAAAAACCATATCTCCAAAGTACTGAA 58.207 33.333 0.00 0.00 0.00 3.02
2942 3186 7.393234 CCAAAAACCATATCTCCAAAGTACTGA 59.607 37.037 0.00 0.00 0.00 3.41
2943 3187 7.393234 TCCAAAAACCATATCTCCAAAGTACTG 59.607 37.037 0.00 0.00 0.00 2.74
3095 3344 5.006358 CCAACGATACACTAATTGCAGGTAC 59.994 44.000 0.00 0.00 0.00 3.34
3182 3431 0.811281 GAACCAGCCTGTAACCATGC 59.189 55.000 0.00 0.00 32.93 4.06
3241 3490 3.153919 AGCGTGGAAGAAAAATAGCCAA 58.846 40.909 0.00 0.00 0.00 4.52
3261 3510 6.148645 GTCCTCTTAGAAAGGAAGAGCAAAAG 59.851 42.308 6.84 0.00 45.76 2.27
3427 3676 4.574828 CCGAACTTCTGTTTTCTTTCCTCA 59.425 41.667 0.00 0.00 36.39 3.86
3472 3721 8.795842 AAATAACCACAGGATTATAACGACAA 57.204 30.769 0.00 0.00 0.00 3.18
3561 3917 4.141574 CCCTCCGTCCCAAAATAAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15
3604 3960 6.687604 ACAGTTTGTATTCCAAAATAGGCAC 58.312 36.000 0.00 0.00 44.36 5.01
4241 4597 4.985413 CAATGTTATCGCATTGTTCTGGT 58.015 39.130 9.78 0.00 46.24 4.00
4250 4606 8.868916 GGAAACAAATAAACAATGTTATCGCAT 58.131 29.630 0.00 0.00 36.33 4.73
4251 4607 7.867909 TGGAAACAAATAAACAATGTTATCGCA 59.132 29.630 0.00 0.00 36.33 5.10
4252 4608 8.233692 TGGAAACAAATAAACAATGTTATCGC 57.766 30.769 0.00 0.00 36.33 4.58
4448 4809 5.391523 GGTTTTACATGAAACAGCGAGCATA 60.392 40.000 0.00 0.00 40.44 3.14
4576 4938 8.711457 CAAAGCACCCAAATAAGAACAATAAAG 58.289 33.333 0.00 0.00 0.00 1.85
4722 5088 9.462606 TGTGTGGATGTATATATCTACTAGTGG 57.537 37.037 21.11 1.87 38.79 4.00
4833 5199 9.462174 GCAATGAAACGAATGATTAATGGATAA 57.538 29.630 0.00 0.00 0.00 1.75
4835 5201 7.719483 AGCAATGAAACGAATGATTAATGGAT 58.281 30.769 0.00 0.00 0.00 3.41
5068 5434 4.838423 TCCAGAACTGATGGTGTAAGAGAA 59.162 41.667 3.19 0.00 39.01 2.87
5075 5441 4.081420 GTCATAGTCCAGAACTGATGGTGT 60.081 45.833 3.19 0.00 39.11 4.16
5076 5442 4.161189 AGTCATAGTCCAGAACTGATGGTG 59.839 45.833 3.19 0.00 39.11 4.17
5077 5443 4.357325 AGTCATAGTCCAGAACTGATGGT 58.643 43.478 3.19 0.00 39.11 3.55
5078 5444 5.350504 AAGTCATAGTCCAGAACTGATGG 57.649 43.478 3.19 0.00 39.11 3.51
5080 5446 5.181748 GCAAAGTCATAGTCCAGAACTGAT 58.818 41.667 3.19 0.00 39.11 2.90
5081 5447 4.563580 GGCAAAGTCATAGTCCAGAACTGA 60.564 45.833 3.19 0.00 39.11 3.41
5082 5448 3.686726 GGCAAAGTCATAGTCCAGAACTG 59.313 47.826 0.00 0.00 39.11 3.16
5083 5449 3.307762 GGGCAAAGTCATAGTCCAGAACT 60.308 47.826 0.00 0.00 42.33 3.01
5084 5450 3.010420 GGGCAAAGTCATAGTCCAGAAC 58.990 50.000 0.00 0.00 0.00 3.01
5085 5451 2.912956 AGGGCAAAGTCATAGTCCAGAA 59.087 45.455 0.00 0.00 0.00 3.02
5086 5452 2.551270 AGGGCAAAGTCATAGTCCAGA 58.449 47.619 0.00 0.00 0.00 3.86
5087 5453 3.452627 AGTAGGGCAAAGTCATAGTCCAG 59.547 47.826 0.00 0.00 0.00 3.86
5088 5454 3.450904 AGTAGGGCAAAGTCATAGTCCA 58.549 45.455 0.00 0.00 0.00 4.02
5089 5455 4.489306 AAGTAGGGCAAAGTCATAGTCC 57.511 45.455 0.00 0.00 0.00 3.85
5090 5456 6.017852 GCATAAAGTAGGGCAAAGTCATAGTC 60.018 42.308 0.00 0.00 0.00 2.59
5091 5457 5.823045 GCATAAAGTAGGGCAAAGTCATAGT 59.177 40.000 0.00 0.00 0.00 2.12
5092 5458 5.050091 CGCATAAAGTAGGGCAAAGTCATAG 60.050 44.000 0.00 0.00 0.00 2.23
5093 5459 4.814234 CGCATAAAGTAGGGCAAAGTCATA 59.186 41.667 0.00 0.00 0.00 2.15
5103 5469 0.180406 AGGGCACGCATAAAGTAGGG 59.820 55.000 0.00 0.00 0.00 3.53
5134 5500 2.419713 GCCTAAACCTACAGTGGCCTAC 60.420 54.545 3.32 0.00 34.81 3.18
5141 5507 7.041576 CGAAAACTAAAAGCCTAAACCTACAGT 60.042 37.037 0.00 0.00 0.00 3.55
5186 5552 8.034313 TCCTACTATGGTATGCTTCAAAAGAT 57.966 34.615 0.00 0.00 0.00 2.40
5206 5575 4.496673 CGATGCAGACAGAACTACTCCTAC 60.497 50.000 0.00 0.00 0.00 3.18
5207 5576 3.628032 CGATGCAGACAGAACTACTCCTA 59.372 47.826 0.00 0.00 0.00 2.94
5208 5577 2.425312 CGATGCAGACAGAACTACTCCT 59.575 50.000 0.00 0.00 0.00 3.69
5209 5578 2.423892 TCGATGCAGACAGAACTACTCC 59.576 50.000 0.00 0.00 0.00 3.85
5210 5579 3.119814 TGTCGATGCAGACAGAACTACTC 60.120 47.826 4.76 0.00 45.18 2.59
5284 6416 2.038557 AGAATCGGGTTGCTGTAACTGT 59.961 45.455 8.49 0.00 39.31 3.55
5472 6612 3.473625 ACAGGTTGTTCCCTTTCGTTAG 58.526 45.455 0.00 0.00 36.75 2.34
5476 6616 3.007635 GGATACAGGTTGTTCCCTTTCG 58.992 50.000 0.00 0.00 36.75 3.46
5481 6621 0.252197 AGCGGATACAGGTTGTTCCC 59.748 55.000 0.00 0.00 36.75 3.97
5527 6667 3.054875 AGCAAATGCATACTCCTGTCAGA 60.055 43.478 8.28 0.00 45.16 3.27
5621 6761 2.127232 GCGCAAGAACTTCGTGGC 60.127 61.111 0.30 5.08 43.02 5.01
5622 6762 1.205064 CAGCGCAAGAACTTCGTGG 59.795 57.895 11.47 0.00 43.02 4.94
5929 7074 5.843969 AGGGGGTGTAACAAATGAATCTTTT 59.156 36.000 0.00 0.00 39.98 2.27
5948 7093 4.305956 ACAGGGCAAAGCAGGGGG 62.306 66.667 0.00 0.00 0.00 5.40
5952 7097 1.201647 CAATCTCACAGGGCAAAGCAG 59.798 52.381 0.00 0.00 0.00 4.24
5953 7098 1.250328 CAATCTCACAGGGCAAAGCA 58.750 50.000 0.00 0.00 0.00 3.91
5954 7099 0.108945 GCAATCTCACAGGGCAAAGC 60.109 55.000 0.00 0.00 0.00 3.51
5955 7100 1.250328 TGCAATCTCACAGGGCAAAG 58.750 50.000 0.00 0.00 0.00 2.77
5956 7101 1.927487 ATGCAATCTCACAGGGCAAA 58.073 45.000 0.00 0.00 38.08 3.68
5957 7102 1.820519 GAATGCAATCTCACAGGGCAA 59.179 47.619 0.00 0.00 38.08 4.52
5959 7104 0.743097 GGAATGCAATCTCACAGGGC 59.257 55.000 1.01 0.00 0.00 5.19
5960 7105 2.426024 CAAGGAATGCAATCTCACAGGG 59.574 50.000 1.01 0.00 0.00 4.45
5961 7106 2.426024 CCAAGGAATGCAATCTCACAGG 59.574 50.000 1.01 0.00 0.00 4.00
5962 7107 2.159282 GCCAAGGAATGCAATCTCACAG 60.159 50.000 1.01 0.00 0.00 3.66
5969 7114 0.611618 TCACGGCCAAGGAATGCAAT 60.612 50.000 2.24 0.00 0.00 3.56
5982 7127 0.944386 AGTCACAAACACATCACGGC 59.056 50.000 0.00 0.00 0.00 5.68
5984 7129 4.472691 AATCAGTCACAAACACATCACG 57.527 40.909 0.00 0.00 0.00 4.35
6014 7168 0.804989 CTGGCAAAACCTAGCTTCCG 59.195 55.000 0.00 0.00 40.22 4.30
6025 7179 2.999355 GAGCAACACAAAACTGGCAAAA 59.001 40.909 0.00 0.00 0.00 2.44
6027 7181 1.134848 GGAGCAACACAAAACTGGCAA 60.135 47.619 0.00 0.00 0.00 4.52
6028 7182 0.459489 GGAGCAACACAAAACTGGCA 59.541 50.000 0.00 0.00 0.00 4.92
6051 7205 3.190535 CACAAAATCCCGACCGAAAAGAT 59.809 43.478 0.00 0.00 0.00 2.40
6059 7213 1.001815 CACACACACAAAATCCCGACC 60.002 52.381 0.00 0.00 0.00 4.79
6060 7214 1.673920 ACACACACACAAAATCCCGAC 59.326 47.619 0.00 0.00 0.00 4.79
6062 7216 1.403679 ACACACACACACAAAATCCCG 59.596 47.619 0.00 0.00 0.00 5.14
6070 7227 1.002746 AGCCACACACACACACACA 60.003 52.632 0.00 0.00 0.00 3.72
6071 7228 1.714899 GGAGCCACACACACACACAC 61.715 60.000 0.00 0.00 0.00 3.82
6072 7229 1.451207 GGAGCCACACACACACACA 60.451 57.895 0.00 0.00 0.00 3.72
6073 7230 1.153168 AGGAGCCACACACACACAC 60.153 57.895 0.00 0.00 0.00 3.82
6074 7231 1.153188 CAGGAGCCACACACACACA 60.153 57.895 0.00 0.00 0.00 3.72
6075 7232 0.748005 AACAGGAGCCACACACACAC 60.748 55.000 0.00 0.00 0.00 3.82
6105 7262 1.912043 ACAGAGTTCATCCCTTCCCAG 59.088 52.381 0.00 0.00 0.00 4.45
6107 7264 3.071747 GGATACAGAGTTCATCCCTTCCC 59.928 52.174 0.00 0.00 33.47 3.97
6124 7281 2.417787 GGTCACCGGTACAAGTGGATAC 60.418 54.545 6.87 5.77 33.66 2.24
6125 7282 1.826720 GGTCACCGGTACAAGTGGATA 59.173 52.381 6.87 0.00 33.66 2.59
6127 7284 0.759812 TGGTCACCGGTACAAGTGGA 60.760 55.000 6.87 0.00 33.66 4.02
6128 7285 0.601841 GTGGTCACCGGTACAAGTGG 60.602 60.000 6.87 0.00 33.66 4.00
6129 7286 0.391597 AGTGGTCACCGGTACAAGTG 59.608 55.000 6.87 7.92 34.08 3.16
6130 7287 0.391597 CAGTGGTCACCGGTACAAGT 59.608 55.000 6.87 0.00 0.00 3.16
6131 7288 0.949105 GCAGTGGTCACCGGTACAAG 60.949 60.000 6.87 4.74 0.00 3.16
6172 7339 3.501385 CCTCCCCCAAAAATTGTACCTGA 60.501 47.826 0.00 0.00 0.00 3.86
6205 7373 3.854666 ACTGCAGATAGCTACACACAAG 58.145 45.455 23.35 0.00 45.94 3.16
6234 7411 2.095059 CCAAAGCACAAGTGTATGGAGC 60.095 50.000 12.57 0.00 34.15 4.70
6237 7414 2.884012 TCACCAAAGCACAAGTGTATGG 59.116 45.455 14.90 14.90 36.48 2.74
6238 7415 3.314913 TGTCACCAAAGCACAAGTGTATG 59.685 43.478 1.79 0.00 0.00 2.39
6241 7421 1.832883 TGTCACCAAAGCACAAGTGT 58.167 45.000 1.79 0.00 0.00 3.55
6252 7432 0.181114 AGCTGAGCAGTTGTCACCAA 59.819 50.000 7.39 0.00 0.00 3.67
6292 7472 5.123227 TCCTGTCCAAGAAAAGTTGTACTG 58.877 41.667 0.00 0.00 0.00 2.74
6379 7566 0.242825 GAATCAGTCCGTCCGTGTGA 59.757 55.000 0.00 0.00 0.00 3.58
6385 7572 2.431057 ACATACCAGAATCAGTCCGTCC 59.569 50.000 0.00 0.00 0.00 4.79
6440 7627 4.391523 ACACCATTTTGTTTTGTGAAGCAC 59.608 37.500 0.00 0.00 34.56 4.40
6441 7628 4.573900 ACACCATTTTGTTTTGTGAAGCA 58.426 34.783 0.00 0.00 0.00 3.91
6442 7629 4.033932 GGACACCATTTTGTTTTGTGAAGC 59.966 41.667 0.00 0.00 0.00 3.86
6443 7630 5.174395 TGGACACCATTTTGTTTTGTGAAG 58.826 37.500 0.00 0.00 0.00 3.02
6445 7632 4.808414 TGGACACCATTTTGTTTTGTGA 57.192 36.364 0.00 0.00 0.00 3.58
6446 7633 5.411053 AGTTTGGACACCATTTTGTTTTGTG 59.589 36.000 0.00 0.00 31.53 3.33
6447 7634 5.555966 AGTTTGGACACCATTTTGTTTTGT 58.444 33.333 0.00 0.00 31.53 2.83
6448 7635 6.148480 TCAAGTTTGGACACCATTTTGTTTTG 59.852 34.615 0.00 0.00 31.53 2.44
6449 7636 6.234177 TCAAGTTTGGACACCATTTTGTTTT 58.766 32.000 0.00 0.00 31.53 2.43
6450 7637 5.799213 TCAAGTTTGGACACCATTTTGTTT 58.201 33.333 0.00 0.00 31.53 2.83
6451 7638 5.413309 TCAAGTTTGGACACCATTTTGTT 57.587 34.783 0.00 0.00 31.53 2.83
6455 7642 3.244181 GCCATCAAGTTTGGACACCATTT 60.244 43.478 0.00 0.00 36.26 2.32
6464 7651 1.133025 GGTGATCGCCATCAAGTTTGG 59.867 52.381 20.66 0.00 40.90 3.28
6492 8253 1.091771 CCAACTCGATGCGCCATCTT 61.092 55.000 4.18 0.00 38.59 2.40
6493 8254 1.522355 CCAACTCGATGCGCCATCT 60.522 57.895 4.18 0.00 38.59 2.90
6505 8266 0.952984 GCTGTCTGTGAGGCCAACTC 60.953 60.000 5.01 0.00 46.78 3.01
6506 8267 1.072159 GCTGTCTGTGAGGCCAACT 59.928 57.895 5.01 0.00 0.00 3.16
6576 8344 0.693049 AAGGAAGTTCACGGCTGGAT 59.307 50.000 5.01 0.00 0.00 3.41
6578 8346 0.955919 GGAAGGAAGTTCACGGCTGG 60.956 60.000 5.01 0.00 36.82 4.85
6579 8347 0.035458 AGGAAGGAAGTTCACGGCTG 59.965 55.000 5.01 0.00 36.82 4.85
6834 8733 1.173444 CGTAGTAGAGCGCCAGGGAT 61.173 60.000 2.29 0.00 0.00 3.85
7007 8906 2.509131 ACGGAGGGAGTACTAGCTAACT 59.491 50.000 0.00 0.00 0.00 2.24
7014 8913 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
7015 8914 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
7016 8915 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
7017 8916 5.306160 CCTATATTTTGGAACGGAGGGAGTA 59.694 44.000 0.00 0.00 0.00 2.59
7018 8917 4.102681 CCTATATTTTGGAACGGAGGGAGT 59.897 45.833 0.00 0.00 0.00 3.85
7019 8918 4.102681 ACCTATATTTTGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
7020 8919 4.042174 ACCTATATTTTGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
7021 8920 4.102681 AGACCTATATTTTGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
7022 8921 5.291905 AGACCTATATTTTGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
7023 8922 7.048512 AGAAAGACCTATATTTTGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
7024 8923 6.954232 AGAAAGACCTATATTTTGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
7025 8924 8.202137 TCTAGAAAGACCTATATTTTGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
7026 8925 9.250624 CTCTAGAAAGACCTATATTTTGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
7037 8936 9.883142 CTTGTTGAAATCTCTAGAAAGACCTAT 57.117 33.333 0.00 0.00 0.00 2.57
7038 8937 8.871125 ACTTGTTGAAATCTCTAGAAAGACCTA 58.129 33.333 0.00 0.00 0.00 3.08
7039 8938 7.659390 CACTTGTTGAAATCTCTAGAAAGACCT 59.341 37.037 0.00 0.00 0.00 3.85
7040 8939 7.657761 TCACTTGTTGAAATCTCTAGAAAGACC 59.342 37.037 0.00 0.00 0.00 3.85
7041 8940 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
7042 8941 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
7043 8942 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
7044 8943 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
7045 8944 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
7046 8945 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
7047 8946 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
7048 8947 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
7049 8948 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
7050 8949 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
7051 8950 8.902540 TTGTATGTAGTCACTTGTTGAAATCT 57.097 30.769 0.00 0.00 35.39 2.40
7052 8951 9.599322 CTTTGTATGTAGTCACTTGTTGAAATC 57.401 33.333 0.00 0.00 35.39 2.17
7053 8952 8.076178 GCTTTGTATGTAGTCACTTGTTGAAAT 58.924 33.333 0.00 0.00 35.39 2.17
7054 8953 7.066404 TGCTTTGTATGTAGTCACTTGTTGAAA 59.934 33.333 0.00 0.00 35.39 2.69
7055 8954 6.540551 TGCTTTGTATGTAGTCACTTGTTGAA 59.459 34.615 0.00 0.00 35.39 2.69
7056 8955 6.052360 TGCTTTGTATGTAGTCACTTGTTGA 58.948 36.000 0.00 0.00 0.00 3.18
7057 8956 6.299023 TGCTTTGTATGTAGTCACTTGTTG 57.701 37.500 0.00 0.00 0.00 3.33
7058 8957 6.935741 TTGCTTTGTATGTAGTCACTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
7059 8958 6.513393 GCTTTGCTTTGTATGTAGTCACTTGT 60.513 38.462 0.00 0.00 0.00 3.16
7060 8959 5.853282 GCTTTGCTTTGTATGTAGTCACTTG 59.147 40.000 0.00 0.00 0.00 3.16
7061 8960 5.530915 TGCTTTGCTTTGTATGTAGTCACTT 59.469 36.000 0.00 0.00 0.00 3.16
7062 8961 5.063204 TGCTTTGCTTTGTATGTAGTCACT 58.937 37.500 0.00 0.00 0.00 3.41
7063 8962 5.356882 TGCTTTGCTTTGTATGTAGTCAC 57.643 39.130 0.00 0.00 0.00 3.67
7064 8963 6.384258 TTTGCTTTGCTTTGTATGTAGTCA 57.616 33.333 0.00 0.00 0.00 3.41
7065 8964 7.594758 TCATTTTGCTTTGCTTTGTATGTAGTC 59.405 33.333 0.00 0.00 0.00 2.59
7066 8965 7.432869 TCATTTTGCTTTGCTTTGTATGTAGT 58.567 30.769 0.00 0.00 0.00 2.73
7067 8966 7.596248 ACTCATTTTGCTTTGCTTTGTATGTAG 59.404 33.333 0.00 0.00 0.00 2.74
7068 8967 7.381948 CACTCATTTTGCTTTGCTTTGTATGTA 59.618 33.333 0.00 0.00 0.00 2.29
7069 8968 6.201425 CACTCATTTTGCTTTGCTTTGTATGT 59.799 34.615 0.00 0.00 0.00 2.29
7070 8969 6.421501 TCACTCATTTTGCTTTGCTTTGTATG 59.578 34.615 0.00 0.00 0.00 2.39
7071 8970 6.514947 TCACTCATTTTGCTTTGCTTTGTAT 58.485 32.000 0.00 0.00 0.00 2.29
7072 8971 5.900425 TCACTCATTTTGCTTTGCTTTGTA 58.100 33.333 0.00 0.00 0.00 2.41
7073 8972 4.757594 TCACTCATTTTGCTTTGCTTTGT 58.242 34.783 0.00 0.00 0.00 2.83
7074 8973 5.721876 TTCACTCATTTTGCTTTGCTTTG 57.278 34.783 0.00 0.00 0.00 2.77
7075 8974 6.285990 AGATTCACTCATTTTGCTTTGCTTT 58.714 32.000 0.00 0.00 0.00 3.51
7076 8975 5.850614 AGATTCACTCATTTTGCTTTGCTT 58.149 33.333 0.00 0.00 0.00 3.91
7077 8976 5.464030 AGATTCACTCATTTTGCTTTGCT 57.536 34.783 0.00 0.00 0.00 3.91
7078 8977 6.088616 GTGTAGATTCACTCATTTTGCTTTGC 59.911 38.462 0.00 0.00 35.68 3.68
7079 8978 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
7080 8979 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.