Multiple sequence alignment - TraesCS4D01G192400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G192400 chr4D 100.000 2964 0 0 1 2964 335347469 335350432 0.000000e+00 5474.0
1 TraesCS4D01G192400 chr4D 100.000 80 0 0 3451 3530 335350919 335350998 7.900000e-32 148.0
2 TraesCS4D01G192400 chr4B 93.855 2506 73 37 290 2753 413498727 413501193 0.000000e+00 3699.0
3 TraesCS4D01G192400 chr4B 97.101 69 2 0 3456 3524 184887710 184887778 2.230000e-22 117.0
4 TraesCS4D01G192400 chr4B 97.101 69 2 0 3456 3524 516312003 516311935 2.230000e-22 117.0
5 TraesCS4D01G192400 chr4B 95.238 63 3 0 1 63 413498321 413498383 2.240000e-17 100.0
6 TraesCS4D01G192400 chr4A 93.946 2329 82 22 325 2620 137525519 137523217 0.000000e+00 3465.0
7 TraesCS4D01G192400 chr4A 87.374 198 12 8 1 195 137527219 137527032 7.670000e-52 215.0
8 TraesCS4D01G192400 chr4A 95.890 73 3 0 2682 2754 137522173 137522101 6.190000e-23 119.0
9 TraesCS4D01G192400 chr4A 100.000 31 0 0 309 339 137525566 137525536 1.370000e-04 58.4
10 TraesCS4D01G192400 chr4A 100.000 31 0 0 309 339 137526720 137526690 1.370000e-04 58.4
11 TraesCS4D01G192400 chr2B 95.732 164 6 1 2801 2964 83896930 83896768 2.700000e-66 263.0
12 TraesCS4D01G192400 chr2B 95.122 164 7 1 2801 2964 83924524 83924362 1.260000e-64 257.0
13 TraesCS4D01G192400 chr2B 94.545 165 7 2 2801 2964 83855990 83855827 1.630000e-63 254.0
14 TraesCS4D01G192400 chr2B 94.512 164 8 1 2801 2964 68788163 68788001 5.850000e-63 252.0
15 TraesCS4D01G192400 chr2B 94.512 164 8 1 2801 2964 83818043 83817881 5.850000e-63 252.0
16 TraesCS4D01G192400 chr2B 85.833 120 17 0 1862 1981 498310557 498310438 1.030000e-25 128.0
17 TraesCS4D01G192400 chr7B 95.031 161 7 1 2801 2961 186978681 186978840 5.850000e-63 252.0
18 TraesCS4D01G192400 chr7B 88.060 67 8 0 1000 1066 128822082 128822148 2.920000e-11 80.5
19 TraesCS4D01G192400 chr7B 97.143 35 1 0 1033 1067 175992979 175992945 3.810000e-05 60.2
20 TraesCS4D01G192400 chr6B 95.031 161 7 1 2801 2961 98646044 98646203 5.850000e-63 252.0
21 TraesCS4D01G192400 chr6B 81.928 83 15 0 1000 1082 574021485 574021403 1.760000e-08 71.3
22 TraesCS4D01G192400 chr1B 94.512 164 8 1 2801 2964 511208722 511208560 5.850000e-63 252.0
23 TraesCS4D01G192400 chr1B 97.101 69 2 0 3456 3524 654512901 654512969 2.230000e-22 117.0
24 TraesCS4D01G192400 chr6A 94.410 161 8 1 2801 2961 102130665 102130824 2.720000e-61 246.0
25 TraesCS4D01G192400 chr6A 97.101 69 2 0 3456 3524 102131129 102131197 2.230000e-22 117.0
26 TraesCS4D01G192400 chr6A 94.595 74 4 0 3456 3529 602947538 602947465 8.010000e-22 115.0
27 TraesCS4D01G192400 chr2A 85.366 123 18 0 1859 1981 564218834 564218956 1.030000e-25 128.0
28 TraesCS4D01G192400 chr7D 94.937 79 4 0 3451 3529 43689864 43689942 1.330000e-24 124.0
29 TraesCS4D01G192400 chr7D 93.333 60 3 1 2742 2801 43689049 43689107 1.750000e-13 87.9
30 TraesCS4D01G192400 chr7D 88.060 67 8 0 1000 1066 165634714 165634780 2.920000e-11 80.5
31 TraesCS4D01G192400 chr7D 97.143 35 1 0 1033 1067 220989881 220989915 3.810000e-05 60.2
32 TraesCS4D01G192400 chr2D 85.000 120 18 0 1862 1981 424015077 424014958 4.790000e-24 122.0
33 TraesCS4D01G192400 chrUn 97.101 69 2 0 3456 3524 22242134 22242202 2.230000e-22 117.0
34 TraesCS4D01G192400 chrUn 95.652 69 3 0 3456 3524 238096014 238095946 1.040000e-20 111.0
35 TraesCS4D01G192400 chr3A 94.595 74 4 0 3456 3529 601388944 601388871 8.010000e-22 115.0
36 TraesCS4D01G192400 chr3A 86.207 87 12 0 1862 1948 489311356 489311270 1.040000e-15 95.3
37 TraesCS4D01G192400 chr3D 86.207 87 12 0 1862 1948 367236379 367236293 1.040000e-15 95.3
38 TraesCS4D01G192400 chr3B 86.364 88 10 2 1862 1948 478322804 478322718 1.040000e-15 95.3
39 TraesCS4D01G192400 chr1A 86.207 87 7 3 1864 1949 444136846 444136928 4.850000e-14 89.8
40 TraesCS4D01G192400 chr7A 88.060 67 8 0 1000 1066 167179682 167179748 2.920000e-11 80.5
41 TraesCS4D01G192400 chr7A 95.833 48 2 0 2754 2801 28304364 28304411 1.050000e-10 78.7
42 TraesCS4D01G192400 chr7A 97.143 35 1 0 1033 1067 235473537 235473571 3.810000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G192400 chr4D 335347469 335350998 3529 False 2811.00 5474 100.0000 1 3530 2 chr4D.!!$F1 3529
1 TraesCS4D01G192400 chr4B 413498321 413501193 2872 False 1899.50 3699 94.5465 1 2753 2 chr4B.!!$F2 2752
2 TraesCS4D01G192400 chr4A 137522101 137527219 5118 True 783.16 3465 95.4420 1 2754 5 chr4A.!!$R1 2753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 2245 0.040157 CTGGACATGTTGTTGCCGTG 60.04 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2627 4837 0.034059 ATCATCGATCGGGGTTCAGC 59.966 55.0 16.41 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.307906 TCTTCACGTGTCCCGGGG 61.308 66.667 23.50 6.77 41.51 5.73
121 141 0.252479 CCACAGGAGAGATGCTGCTT 59.748 55.000 0.00 0.00 43.49 3.91
122 142 1.339824 CCACAGGAGAGATGCTGCTTT 60.340 52.381 0.00 0.00 43.49 3.51
124 144 1.339824 ACAGGAGAGATGCTGCTTTGG 60.340 52.381 0.00 0.00 43.49 3.28
125 145 0.255318 AGGAGAGATGCTGCTTTGGG 59.745 55.000 0.00 0.00 43.49 4.12
126 146 0.254178 GGAGAGATGCTGCTTTGGGA 59.746 55.000 0.00 0.00 31.32 4.37
127 147 1.666054 GAGAGATGCTGCTTTGGGAG 58.334 55.000 0.00 0.00 0.00 4.30
129 149 1.065564 AGAGATGCTGCTTTGGGAGTC 60.066 52.381 0.00 0.00 33.26 3.36
130 150 0.990374 AGATGCTGCTTTGGGAGTCT 59.010 50.000 0.00 0.00 33.26 3.24
131 151 2.169352 GAGATGCTGCTTTGGGAGTCTA 59.831 50.000 0.00 0.00 33.26 2.59
135 155 1.552792 GCTGCTTTGGGAGTCTAGAGT 59.447 52.381 0.00 0.00 33.26 3.24
136 156 2.676463 GCTGCTTTGGGAGTCTAGAGTG 60.676 54.545 4.36 0.00 33.26 3.51
137 157 2.564947 CTGCTTTGGGAGTCTAGAGTGT 59.435 50.000 4.36 0.00 0.00 3.55
138 158 2.300152 TGCTTTGGGAGTCTAGAGTGTG 59.700 50.000 4.36 0.00 0.00 3.82
139 159 2.300437 GCTTTGGGAGTCTAGAGTGTGT 59.700 50.000 4.36 0.00 0.00 3.72
140 160 3.862642 GCTTTGGGAGTCTAGAGTGTGTG 60.863 52.174 4.36 0.00 0.00 3.82
142 162 2.515854 TGGGAGTCTAGAGTGTGTGTC 58.484 52.381 4.36 0.00 0.00 3.67
143 163 2.158519 TGGGAGTCTAGAGTGTGTGTCA 60.159 50.000 4.36 0.00 0.00 3.58
144 164 2.891580 GGGAGTCTAGAGTGTGTGTCAA 59.108 50.000 4.36 0.00 0.00 3.18
145 165 3.057174 GGGAGTCTAGAGTGTGTGTCAAG 60.057 52.174 4.36 0.00 0.00 3.02
146 166 3.570559 GAGTCTAGAGTGTGTGTCAAGC 58.429 50.000 4.36 0.00 0.00 4.01
153 173 0.661187 GTGTGTGTCAAGCGGCATTG 60.661 55.000 1.45 4.34 0.00 2.82
195 219 2.871133 CATAAGACAAGTACCGCACGA 58.129 47.619 0.00 0.00 0.00 4.35
199 223 0.520404 GACAAGTACCGCACGAGAGA 59.480 55.000 0.00 0.00 0.00 3.10
200 224 1.132643 GACAAGTACCGCACGAGAGAT 59.867 52.381 0.00 0.00 0.00 2.75
201 225 1.135373 ACAAGTACCGCACGAGAGATG 60.135 52.381 0.00 0.00 0.00 2.90
204 352 0.867753 GTACCGCACGAGAGATGCTG 60.868 60.000 0.00 0.00 41.10 4.41
208 356 0.368227 CGCACGAGAGATGCTGTTTC 59.632 55.000 0.00 0.00 41.10 2.78
214 362 3.748568 ACGAGAGATGCTGTTTCTTTTCC 59.251 43.478 0.00 0.00 0.00 3.13
221 369 5.541484 AGATGCTGTTTCTTTTCCTGGATTT 59.459 36.000 0.00 0.00 0.00 2.17
230 378 8.562052 GTTTCTTTTCCTGGATTTAACTTCGTA 58.438 33.333 0.00 0.00 0.00 3.43
235 383 8.488651 TTTCCTGGATTTAACTTCGTATCTTC 57.511 34.615 0.00 0.00 0.00 2.87
236 384 6.579865 TCCTGGATTTAACTTCGTATCTTCC 58.420 40.000 0.00 0.00 0.00 3.46
237 385 5.758784 CCTGGATTTAACTTCGTATCTTCCC 59.241 44.000 0.00 0.00 0.00 3.97
238 386 6.302535 TGGATTTAACTTCGTATCTTCCCA 57.697 37.500 0.00 0.00 0.00 4.37
239 387 6.713276 TGGATTTAACTTCGTATCTTCCCAA 58.287 36.000 0.00 0.00 0.00 4.12
240 388 6.821665 TGGATTTAACTTCGTATCTTCCCAAG 59.178 38.462 0.00 0.00 0.00 3.61
241 389 6.822170 GGATTTAACTTCGTATCTTCCCAAGT 59.178 38.462 0.00 0.00 0.00 3.16
242 390 7.201617 GGATTTAACTTCGTATCTTCCCAAGTG 60.202 40.741 0.00 0.00 0.00 3.16
243 391 3.611766 ACTTCGTATCTTCCCAAGTGG 57.388 47.619 0.00 0.00 0.00 4.00
245 393 1.568504 TCGTATCTTCCCAAGTGGCT 58.431 50.000 0.00 0.00 0.00 4.75
246 394 1.906574 TCGTATCTTCCCAAGTGGCTT 59.093 47.619 0.00 0.00 0.00 4.35
247 395 3.101437 TCGTATCTTCCCAAGTGGCTTA 58.899 45.455 0.00 0.00 0.00 3.09
248 396 3.118884 TCGTATCTTCCCAAGTGGCTTAC 60.119 47.826 0.00 0.00 0.00 2.34
249 397 3.118738 CGTATCTTCCCAAGTGGCTTACT 60.119 47.826 0.00 0.00 42.89 2.24
250 398 2.859165 TCTTCCCAAGTGGCTTACTG 57.141 50.000 0.00 0.00 40.26 2.74
251 399 2.334977 TCTTCCCAAGTGGCTTACTGA 58.665 47.619 0.00 0.00 40.26 3.41
252 400 2.038557 TCTTCCCAAGTGGCTTACTGAC 59.961 50.000 0.00 0.00 40.26 3.51
253 401 1.729586 TCCCAAGTGGCTTACTGACT 58.270 50.000 0.00 0.00 40.26 3.41
254 402 1.623811 TCCCAAGTGGCTTACTGACTC 59.376 52.381 0.00 0.00 40.26 3.36
266 501 6.041182 TGGCTTACTGACTCAGTAGTACAAAA 59.959 38.462 16.68 4.13 45.83 2.44
267 502 6.365518 GGCTTACTGACTCAGTAGTACAAAAC 59.634 42.308 16.68 1.69 45.83 2.43
272 507 6.914757 ACTGACTCAGTAGTACAAAACGTTAC 59.085 38.462 10.13 0.00 43.46 2.50
284 519 4.905836 CGTTACACGCCAAACCAC 57.094 55.556 0.00 0.00 33.65 4.16
288 523 2.731341 CGTTACACGCCAAACCACAAAA 60.731 45.455 0.00 0.00 33.65 2.44
306 1578 1.731720 AATGCTCGGTGCTTCTTCTC 58.268 50.000 3.53 0.00 43.37 2.87
368 1785 6.653183 CATGCATTTTCTCCTCGTAATACTG 58.347 40.000 0.00 0.00 0.00 2.74
380 1798 3.678072 TCGTAATACTGCAACTGTCAAGC 59.322 43.478 0.00 0.00 0.00 4.01
388 1806 2.227149 TGCAACTGTCAAGCATCACATC 59.773 45.455 0.00 0.00 32.55 3.06
390 1808 3.425892 GCAACTGTCAAGCATCACATCTC 60.426 47.826 0.00 0.00 0.00 2.75
412 1830 1.282570 CGCCAACGCAACTGTCAAT 59.717 52.632 0.00 0.00 34.03 2.57
426 1844 6.616893 GCAACTGTCAATACGATCGTACAAAA 60.617 38.462 28.96 10.25 33.01 2.44
726 2154 1.407618 CATCGGATCGTCACTAACCCA 59.592 52.381 0.00 0.00 0.00 4.51
727 2155 1.771565 TCGGATCGTCACTAACCCAT 58.228 50.000 0.00 0.00 0.00 4.00
728 2156 1.407618 TCGGATCGTCACTAACCCATG 59.592 52.381 0.00 0.00 0.00 3.66
729 2157 1.583054 GGATCGTCACTAACCCATGC 58.417 55.000 0.00 0.00 0.00 4.06
741 2174 0.324923 ACCCATGCATGCCATCACTT 60.325 50.000 21.69 0.00 29.71 3.16
810 2243 1.135603 CATCTGGACATGTTGTTGCCG 60.136 52.381 0.00 0.00 0.00 5.69
811 2244 0.179032 TCTGGACATGTTGTTGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
812 2245 0.040157 CTGGACATGTTGTTGCCGTG 60.040 55.000 0.00 0.00 0.00 4.94
813 2246 1.371635 GGACATGTTGTTGCCGTGC 60.372 57.895 0.00 0.00 0.00 5.34
814 2247 1.358402 GACATGTTGTTGCCGTGCA 59.642 52.632 0.00 0.00 36.47 4.57
922 2363 3.357079 GGAGGTTGGTGCAGTGCG 61.357 66.667 11.20 0.00 0.00 5.34
1175 2630 4.303853 GGATCGACGTCCGTCATG 57.696 61.111 18.69 4.76 44.77 3.07
1190 2645 2.095263 CGTCATGGAAATGGTGTTGGTC 60.095 50.000 0.00 0.00 0.00 4.02
1220 2675 0.179023 TCTGGCTGATGTGTGTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
1403 2864 5.185828 TCTCTCTGTGTAGTACATGCATGTT 59.814 40.000 35.45 21.86 41.97 2.71
1404 2865 5.793817 TCTCTGTGTAGTACATGCATGTTT 58.206 37.500 35.45 25.15 41.97 2.83
1405 2866 5.869344 TCTCTGTGTAGTACATGCATGTTTC 59.131 40.000 35.45 26.46 41.97 2.78
1406 2867 5.793817 TCTGTGTAGTACATGCATGTTTCT 58.206 37.500 35.45 30.66 41.97 2.52
1407 2868 5.639082 TCTGTGTAGTACATGCATGTTTCTG 59.361 40.000 35.45 19.86 41.97 3.02
1413 2874 2.172679 ACATGCATGTTTCTGCCATCA 58.827 42.857 26.61 0.00 41.58 3.07
1471 2932 1.810151 TGCGAAACTTTGCTATGGACC 59.190 47.619 3.43 0.00 38.42 4.46
1476 2937 2.386661 ACTTTGCTATGGACCGACTG 57.613 50.000 0.00 0.00 0.00 3.51
1506 2971 6.291377 TCTGTCATCATTCCTGCTATAAACC 58.709 40.000 0.00 0.00 0.00 3.27
1643 3116 6.448053 TCAAGAATTTACTTCAGTCGTTCG 57.552 37.500 0.00 0.00 36.24 3.95
1658 3137 7.342194 TCAGTCGTTCGTTCAAAAATAGAAAG 58.658 34.615 0.00 0.00 0.00 2.62
1693 3172 0.955178 CAGTGACCAGTCTCGTGTCT 59.045 55.000 0.00 0.00 0.00 3.41
1694 3173 2.152016 CAGTGACCAGTCTCGTGTCTA 58.848 52.381 0.00 0.00 0.00 2.59
1695 3174 2.095668 CAGTGACCAGTCTCGTGTCTAC 60.096 54.545 0.00 0.00 0.00 2.59
1712 3191 4.456911 TGTCTACGTACGGTTCTTCTGAAT 59.543 41.667 21.06 0.00 34.40 2.57
1713 3192 5.643348 TGTCTACGTACGGTTCTTCTGAATA 59.357 40.000 21.06 0.00 34.40 1.75
1714 3193 6.317140 TGTCTACGTACGGTTCTTCTGAATAT 59.683 38.462 21.06 0.00 34.40 1.28
1715 3194 7.495606 TGTCTACGTACGGTTCTTCTGAATATA 59.504 37.037 21.06 0.00 34.40 0.86
1771 3256 4.520492 AGCTGAAAATTCGGTGAAGAACAT 59.480 37.500 4.06 0.00 35.96 2.71
1832 3317 3.505464 ATACTCCACACTGAGCGTAAC 57.495 47.619 0.00 0.00 35.72 2.50
1833 3318 0.039437 ACTCCACACTGAGCGTAACG 60.039 55.000 0.00 0.00 35.72 3.18
1841 3331 2.097396 CACTGAGCGTAACGTGAAAGTG 60.097 50.000 0.00 0.00 0.00 3.16
2083 3573 1.896122 CTACCTCCCCGTGAACCCAC 61.896 65.000 0.00 0.00 39.86 4.61
2131 3621 1.688793 CGACGACGTCAAATACCACA 58.311 50.000 26.26 0.00 32.09 4.17
2627 4837 7.292292 TCGTTTGAACTTGTTATTGGTATTCG 58.708 34.615 0.00 0.00 0.00 3.34
2628 4838 6.032042 CGTTTGAACTTGTTATTGGTATTCGC 59.968 38.462 0.00 0.00 0.00 4.70
2744 5219 2.068834 ACGGGTAGATGGTGTAGGAG 57.931 55.000 0.00 0.00 0.00 3.69
2754 5229 5.721232 AGATGGTGTAGGAGTACTTTTTCG 58.279 41.667 0.00 0.00 0.00 3.46
2755 5230 5.479375 AGATGGTGTAGGAGTACTTTTTCGA 59.521 40.000 0.00 0.00 0.00 3.71
2756 5231 5.130292 TGGTGTAGGAGTACTTTTTCGAG 57.870 43.478 0.00 0.00 0.00 4.04
2757 5232 4.828939 TGGTGTAGGAGTACTTTTTCGAGA 59.171 41.667 0.00 0.00 0.00 4.04
2758 5233 5.302568 TGGTGTAGGAGTACTTTTTCGAGAA 59.697 40.000 0.00 0.00 0.00 2.87
2759 5234 6.014840 TGGTGTAGGAGTACTTTTTCGAGAAT 60.015 38.462 0.00 0.00 0.00 2.40
2760 5235 6.310711 GGTGTAGGAGTACTTTTTCGAGAATG 59.689 42.308 0.00 0.64 0.00 2.67
2761 5236 5.867716 TGTAGGAGTACTTTTTCGAGAATGC 59.132 40.000 0.00 0.00 0.00 3.56
2762 5237 5.153950 AGGAGTACTTTTTCGAGAATGCT 57.846 39.130 0.00 0.00 0.00 3.79
2763 5238 6.282199 AGGAGTACTTTTTCGAGAATGCTA 57.718 37.500 0.00 0.00 0.00 3.49
2764 5239 6.698380 AGGAGTACTTTTTCGAGAATGCTAA 58.302 36.000 0.00 0.00 0.00 3.09
2765 5240 7.331791 AGGAGTACTTTTTCGAGAATGCTAAT 58.668 34.615 0.00 0.00 0.00 1.73
2766 5241 7.824779 AGGAGTACTTTTTCGAGAATGCTAATT 59.175 33.333 0.00 0.00 0.00 1.40
2767 5242 8.451748 GGAGTACTTTTTCGAGAATGCTAATTT 58.548 33.333 0.00 0.00 0.00 1.82
2768 5243 9.479278 GAGTACTTTTTCGAGAATGCTAATTTC 57.521 33.333 0.00 0.00 0.00 2.17
2769 5244 8.451748 AGTACTTTTTCGAGAATGCTAATTTCC 58.548 33.333 0.00 0.00 0.00 3.13
2770 5245 7.214467 ACTTTTTCGAGAATGCTAATTTCCA 57.786 32.000 1.97 0.00 0.00 3.53
2771 5246 7.308435 ACTTTTTCGAGAATGCTAATTTCCAG 58.692 34.615 1.97 0.00 0.00 3.86
2772 5247 6.817765 TTTTCGAGAATGCTAATTTCCAGT 57.182 33.333 0.00 0.00 0.00 4.00
2773 5248 6.422776 TTTCGAGAATGCTAATTTCCAGTC 57.577 37.500 0.00 0.00 0.00 3.51
2774 5249 4.112634 TCGAGAATGCTAATTTCCAGTCG 58.887 43.478 0.00 0.00 31.91 4.18
2775 5250 3.246226 CGAGAATGCTAATTTCCAGTCGG 59.754 47.826 0.00 0.00 31.91 4.79
2776 5251 2.945668 AGAATGCTAATTTCCAGTCGGC 59.054 45.455 0.00 0.00 31.91 5.54
2777 5252 2.418368 ATGCTAATTTCCAGTCGGCA 57.582 45.000 0.00 0.00 0.00 5.69
2778 5253 1.737838 TGCTAATTTCCAGTCGGCAG 58.262 50.000 0.00 0.00 0.00 4.85
2779 5254 1.017387 GCTAATTTCCAGTCGGCAGG 58.983 55.000 0.00 0.00 0.00 4.85
2780 5255 1.406887 GCTAATTTCCAGTCGGCAGGA 60.407 52.381 0.00 0.00 0.00 3.86
2781 5256 2.939640 GCTAATTTCCAGTCGGCAGGAA 60.940 50.000 10.16 10.16 41.92 3.36
2784 5259 1.821216 TTTCCAGTCGGCAGGAAATC 58.179 50.000 21.20 0.00 46.07 2.17
2785 5260 0.984230 TTCCAGTCGGCAGGAAATCT 59.016 50.000 11.92 0.00 40.76 2.40
2786 5261 0.250234 TCCAGTCGGCAGGAAATCTG 59.750 55.000 0.00 0.00 46.03 2.90
2796 5271 3.498927 CAGGAAATCTGCAACACATCC 57.501 47.619 0.00 0.00 36.60 3.51
2797 5272 2.086869 AGGAAATCTGCAACACATCCG 58.913 47.619 0.00 0.00 0.00 4.18
2798 5273 1.468054 GGAAATCTGCAACACATCCGC 60.468 52.381 0.00 0.00 0.00 5.54
2799 5274 1.199789 GAAATCTGCAACACATCCGCA 59.800 47.619 0.00 0.00 0.00 5.69
2800 5275 0.523072 AATCTGCAACACATCCGCAC 59.477 50.000 0.00 0.00 0.00 5.34
2801 5276 0.606130 ATCTGCAACACATCCGCACA 60.606 50.000 0.00 0.00 0.00 4.57
2802 5277 1.081906 CTGCAACACATCCGCACAC 60.082 57.895 0.00 0.00 0.00 3.82
2803 5278 1.509644 CTGCAACACATCCGCACACT 61.510 55.000 0.00 0.00 0.00 3.55
2804 5279 0.250081 TGCAACACATCCGCACACTA 60.250 50.000 0.00 0.00 0.00 2.74
2805 5280 0.443869 GCAACACATCCGCACACTAG 59.556 55.000 0.00 0.00 0.00 2.57
2806 5281 0.443869 CAACACATCCGCACACTAGC 59.556 55.000 0.00 0.00 0.00 3.42
2814 5289 3.562635 GCACACTAGCGAACCACC 58.437 61.111 0.00 0.00 0.00 4.61
2815 5290 1.004918 GCACACTAGCGAACCACCT 60.005 57.895 0.00 0.00 0.00 4.00
2816 5291 1.014564 GCACACTAGCGAACCACCTC 61.015 60.000 0.00 0.00 0.00 3.85
2817 5292 0.317160 CACACTAGCGAACCACCTCA 59.683 55.000 0.00 0.00 0.00 3.86
2818 5293 0.317479 ACACTAGCGAACCACCTCAC 59.683 55.000 0.00 0.00 0.00 3.51
2819 5294 0.389948 CACTAGCGAACCACCTCACC 60.390 60.000 0.00 0.00 0.00 4.02
2820 5295 0.542232 ACTAGCGAACCACCTCACCT 60.542 55.000 0.00 0.00 0.00 4.00
2821 5296 1.272313 ACTAGCGAACCACCTCACCTA 60.272 52.381 0.00 0.00 0.00 3.08
2822 5297 1.134560 CTAGCGAACCACCTCACCTAC 59.865 57.143 0.00 0.00 0.00 3.18
2823 5298 1.445582 GCGAACCACCTCACCTACG 60.446 63.158 0.00 0.00 0.00 3.51
2824 5299 1.962144 CGAACCACCTCACCTACGT 59.038 57.895 0.00 0.00 0.00 3.57
2825 5300 0.316204 CGAACCACCTCACCTACGTT 59.684 55.000 0.00 0.00 0.00 3.99
2826 5301 1.668047 CGAACCACCTCACCTACGTTC 60.668 57.143 0.00 0.00 0.00 3.95
2827 5302 1.617357 GAACCACCTCACCTACGTTCT 59.383 52.381 0.00 0.00 0.00 3.01
2828 5303 1.713297 ACCACCTCACCTACGTTCTT 58.287 50.000 0.00 0.00 0.00 2.52
2829 5304 2.044758 ACCACCTCACCTACGTTCTTT 58.955 47.619 0.00 0.00 0.00 2.52
2830 5305 2.436911 ACCACCTCACCTACGTTCTTTT 59.563 45.455 0.00 0.00 0.00 2.27
2831 5306 3.118149 ACCACCTCACCTACGTTCTTTTT 60.118 43.478 0.00 0.00 0.00 1.94
2856 5331 9.943163 TTTTTGTAAAAATGAAAGCAAATAGGC 57.057 25.926 0.00 0.00 33.29 3.93
2869 5344 6.025749 AGCAAATAGGCTTTTTAACCTGTC 57.974 37.500 2.56 0.00 42.71 3.51
2870 5345 5.775195 AGCAAATAGGCTTTTTAACCTGTCT 59.225 36.000 2.56 0.00 42.71 3.41
2871 5346 6.071896 AGCAAATAGGCTTTTTAACCTGTCTC 60.072 38.462 2.56 0.00 42.71 3.36
2872 5347 6.621613 CAAATAGGCTTTTTAACCTGTCTCC 58.378 40.000 2.56 0.00 36.77 3.71
2873 5348 5.780958 ATAGGCTTTTTAACCTGTCTCCT 57.219 39.130 0.00 0.00 36.77 3.69
2874 5349 4.455070 AGGCTTTTTAACCTGTCTCCTT 57.545 40.909 0.00 0.00 34.07 3.36
2875 5350 4.804597 AGGCTTTTTAACCTGTCTCCTTT 58.195 39.130 0.00 0.00 34.07 3.11
2876 5351 5.208890 AGGCTTTTTAACCTGTCTCCTTTT 58.791 37.500 0.00 0.00 34.07 2.27
2877 5352 5.302059 AGGCTTTTTAACCTGTCTCCTTTTC 59.698 40.000 0.00 0.00 34.07 2.29
2878 5353 5.302059 GGCTTTTTAACCTGTCTCCTTTTCT 59.698 40.000 0.00 0.00 0.00 2.52
2879 5354 6.489022 GGCTTTTTAACCTGTCTCCTTTTCTA 59.511 38.462 0.00 0.00 0.00 2.10
2880 5355 7.361127 GCTTTTTAACCTGTCTCCTTTTCTAC 58.639 38.462 0.00 0.00 0.00 2.59
2881 5356 7.486802 TTTTTAACCTGTCTCCTTTTCTACG 57.513 36.000 0.00 0.00 0.00 3.51
2882 5357 5.796424 TTAACCTGTCTCCTTTTCTACGT 57.204 39.130 0.00 0.00 0.00 3.57
2883 5358 4.684484 AACCTGTCTCCTTTTCTACGTT 57.316 40.909 0.00 0.00 0.00 3.99
2884 5359 4.684484 ACCTGTCTCCTTTTCTACGTTT 57.316 40.909 0.00 0.00 0.00 3.60
2885 5360 4.377897 ACCTGTCTCCTTTTCTACGTTTG 58.622 43.478 0.00 0.00 0.00 2.93
2886 5361 3.186613 CCTGTCTCCTTTTCTACGTTTGC 59.813 47.826 0.00 0.00 0.00 3.68
2887 5362 3.799366 TGTCTCCTTTTCTACGTTTGCA 58.201 40.909 0.00 0.00 0.00 4.08
2888 5363 3.558418 TGTCTCCTTTTCTACGTTTGCAC 59.442 43.478 0.00 0.00 0.00 4.57
2889 5364 3.558418 GTCTCCTTTTCTACGTTTGCACA 59.442 43.478 0.00 0.00 0.00 4.57
2890 5365 4.034742 GTCTCCTTTTCTACGTTTGCACAA 59.965 41.667 0.00 0.00 0.00 3.33
2891 5366 4.636648 TCTCCTTTTCTACGTTTGCACAAA 59.363 37.500 0.00 0.00 0.00 2.83
2892 5367 5.124138 TCTCCTTTTCTACGTTTGCACAAAA 59.876 36.000 0.00 0.00 31.33 2.44
2893 5368 5.336744 TCCTTTTCTACGTTTGCACAAAAG 58.663 37.500 0.00 7.38 36.18 2.27
2894 5369 5.099575 CCTTTTCTACGTTTGCACAAAAGT 58.900 37.500 16.71 16.71 43.41 2.66
2895 5370 5.004345 CCTTTTCTACGTTTGCACAAAAGTG 59.996 40.000 20.21 12.37 41.66 3.16
2896 5371 4.948608 TTCTACGTTTGCACAAAAGTGA 57.051 36.364 20.21 13.93 41.66 3.41
2897 5372 4.948608 TCTACGTTTGCACAAAAGTGAA 57.051 36.364 20.21 8.78 41.66 3.18
2898 5373 5.493133 TCTACGTTTGCACAAAAGTGAAT 57.507 34.783 20.21 1.37 41.66 2.57
2899 5374 5.270083 TCTACGTTTGCACAAAAGTGAATG 58.730 37.500 20.21 10.49 41.66 2.67
2900 5375 2.602660 ACGTTTGCACAAAAGTGAATGC 59.397 40.909 12.79 0.00 40.49 3.56
2901 5376 2.602211 CGTTTGCACAAAAGTGAATGCA 59.398 40.909 0.00 0.00 45.94 3.96
2905 5380 3.794717 TGCACAAAAGTGAATGCAATGT 58.205 36.364 0.00 0.00 44.72 2.71
2906 5381 3.803231 TGCACAAAAGTGAATGCAATGTC 59.197 39.130 0.00 0.00 44.72 3.06
2907 5382 3.184986 GCACAAAAGTGAATGCAATGTCC 59.815 43.478 0.00 0.00 38.00 4.02
2908 5383 3.426191 CACAAAAGTGAATGCAATGTCCG 59.574 43.478 0.00 0.00 0.00 4.79
2909 5384 3.317711 ACAAAAGTGAATGCAATGTCCGA 59.682 39.130 0.00 0.00 0.00 4.55
2910 5385 4.022068 ACAAAAGTGAATGCAATGTCCGAT 60.022 37.500 0.00 0.00 0.00 4.18
2911 5386 4.361451 AAAGTGAATGCAATGTCCGATC 57.639 40.909 0.00 0.00 0.00 3.69
2912 5387 3.272574 AGTGAATGCAATGTCCGATCT 57.727 42.857 0.00 0.00 0.00 2.75
2913 5388 3.614092 AGTGAATGCAATGTCCGATCTT 58.386 40.909 0.00 0.00 0.00 2.40
2914 5389 4.012374 AGTGAATGCAATGTCCGATCTTT 58.988 39.130 0.00 0.00 0.00 2.52
2915 5390 4.460382 AGTGAATGCAATGTCCGATCTTTT 59.540 37.500 0.00 0.00 0.00 2.27
2916 5391 4.795278 GTGAATGCAATGTCCGATCTTTTC 59.205 41.667 0.00 0.00 0.00 2.29
2917 5392 4.142403 TGAATGCAATGTCCGATCTTTTCC 60.142 41.667 0.00 0.00 0.00 3.13
2918 5393 2.789213 TGCAATGTCCGATCTTTTCCA 58.211 42.857 0.00 0.00 0.00 3.53
2919 5394 2.487762 TGCAATGTCCGATCTTTTCCAC 59.512 45.455 0.00 0.00 0.00 4.02
2920 5395 2.487762 GCAATGTCCGATCTTTTCCACA 59.512 45.455 0.00 0.00 0.00 4.17
2921 5396 3.670627 GCAATGTCCGATCTTTTCCACAC 60.671 47.826 0.00 0.00 0.00 3.82
2922 5397 3.703001 ATGTCCGATCTTTTCCACACT 57.297 42.857 0.00 0.00 0.00 3.55
2923 5398 3.485463 TGTCCGATCTTTTCCACACTT 57.515 42.857 0.00 0.00 0.00 3.16
2924 5399 4.610605 TGTCCGATCTTTTCCACACTTA 57.389 40.909 0.00 0.00 0.00 2.24
2925 5400 4.963373 TGTCCGATCTTTTCCACACTTAA 58.037 39.130 0.00 0.00 0.00 1.85
2926 5401 4.994852 TGTCCGATCTTTTCCACACTTAAG 59.005 41.667 0.00 0.00 0.00 1.85
2927 5402 4.995487 GTCCGATCTTTTCCACACTTAAGT 59.005 41.667 1.12 1.12 0.00 2.24
2928 5403 6.161381 GTCCGATCTTTTCCACACTTAAGTA 58.839 40.000 8.04 0.00 0.00 2.24
2929 5404 6.310711 GTCCGATCTTTTCCACACTTAAGTAG 59.689 42.308 8.04 5.71 0.00 2.57
2930 5405 6.209986 TCCGATCTTTTCCACACTTAAGTAGA 59.790 38.462 8.04 6.14 0.00 2.59
2931 5406 7.042335 CCGATCTTTTCCACACTTAAGTAGAT 58.958 38.462 8.04 10.78 0.00 1.98
2932 5407 7.549488 CCGATCTTTTCCACACTTAAGTAGATT 59.451 37.037 8.04 0.00 0.00 2.40
2933 5408 9.582431 CGATCTTTTCCACACTTAAGTAGATTA 57.418 33.333 8.04 0.00 0.00 1.75
2950 5425 8.705048 AGTAGATTATTTTTCCAACTCGTCTC 57.295 34.615 0.00 0.00 0.00 3.36
2951 5426 6.648725 AGATTATTTTTCCAACTCGTCTCG 57.351 37.500 0.00 0.00 0.00 4.04
2952 5427 6.395629 AGATTATTTTTCCAACTCGTCTCGA 58.604 36.000 0.00 0.00 0.00 4.04
2963 5438 2.613730 TCGTCTCGAGTTGATGACAC 57.386 50.000 13.13 0.00 0.00 3.67
3470 5945 3.570926 TGTGAAGAGACGCGATAACTT 57.429 42.857 15.93 12.50 0.00 2.66
3471 5946 4.690184 TGTGAAGAGACGCGATAACTTA 57.310 40.909 15.93 0.00 0.00 2.24
3472 5947 5.244785 TGTGAAGAGACGCGATAACTTAT 57.755 39.130 15.93 0.00 0.00 1.73
3473 5948 5.034797 TGTGAAGAGACGCGATAACTTATG 58.965 41.667 15.93 0.00 0.00 1.90
3474 5949 4.042398 TGAAGAGACGCGATAACTTATGC 58.958 43.478 15.93 2.29 0.00 3.14
3475 5950 3.710326 AGAGACGCGATAACTTATGCA 57.290 42.857 15.93 0.00 0.00 3.96
3476 5951 3.372954 AGAGACGCGATAACTTATGCAC 58.627 45.455 15.93 0.00 0.00 4.57
3477 5952 2.470821 AGACGCGATAACTTATGCACC 58.529 47.619 15.93 0.00 0.00 5.01
3478 5953 1.525619 GACGCGATAACTTATGCACCC 59.474 52.381 15.93 0.00 0.00 4.61
3479 5954 0.865769 CGCGATAACTTATGCACCCC 59.134 55.000 0.00 0.00 0.00 4.95
3480 5955 0.865769 GCGATAACTTATGCACCCCG 59.134 55.000 0.00 0.00 0.00 5.73
3481 5956 1.508632 CGATAACTTATGCACCCCGG 58.491 55.000 0.00 0.00 0.00 5.73
3482 5957 1.202604 CGATAACTTATGCACCCCGGT 60.203 52.381 0.00 0.00 0.00 5.28
3483 5958 2.490991 GATAACTTATGCACCCCGGTC 58.509 52.381 0.00 0.00 0.00 4.79
3484 5959 0.542805 TAACTTATGCACCCCGGTCC 59.457 55.000 0.00 0.00 0.00 4.46
3485 5960 1.205460 AACTTATGCACCCCGGTCCT 61.205 55.000 0.00 0.00 0.00 3.85
3486 5961 1.153168 CTTATGCACCCCGGTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
3487 5962 2.608970 CTTATGCACCCCGGTCCTGG 62.609 65.000 0.00 0.00 0.00 4.45
3488 5963 3.935456 TATGCACCCCGGTCCTGGT 62.935 63.158 0.00 0.00 34.40 4.00
3489 5964 2.533037 TATGCACCCCGGTCCTGGTA 62.533 60.000 0.00 0.00 32.32 3.25
3490 5965 3.324108 GCACCCCGGTCCTGGTAA 61.324 66.667 0.00 0.00 32.32 2.85
3491 5966 2.666812 CACCCCGGTCCTGGTAAC 59.333 66.667 0.00 0.00 32.32 2.50
3492 5967 1.916777 CACCCCGGTCCTGGTAACT 60.917 63.158 0.00 0.00 32.32 2.24
3493 5968 1.151965 ACCCCGGTCCTGGTAACTT 60.152 57.895 0.00 0.00 31.61 2.66
3494 5969 0.769386 ACCCCGGTCCTGGTAACTTT 60.769 55.000 0.00 0.00 31.61 2.66
3495 5970 0.322187 CCCCGGTCCTGGTAACTTTG 60.322 60.000 0.00 0.00 37.61 2.77
3496 5971 0.322187 CCCGGTCCTGGTAACTTTGG 60.322 60.000 0.00 0.00 37.61 3.28
3497 5972 0.958876 CCGGTCCTGGTAACTTTGGC 60.959 60.000 0.00 0.00 37.61 4.52
3498 5973 1.296056 CGGTCCTGGTAACTTTGGCG 61.296 60.000 0.00 0.00 37.61 5.69
3499 5974 0.035739 GGTCCTGGTAACTTTGGCGA 59.964 55.000 0.00 0.00 37.61 5.54
3500 5975 1.439679 GTCCTGGTAACTTTGGCGAG 58.560 55.000 0.00 0.00 37.61 5.03
3501 5976 1.001633 GTCCTGGTAACTTTGGCGAGA 59.998 52.381 0.00 0.00 37.61 4.04
3502 5977 1.695242 TCCTGGTAACTTTGGCGAGAA 59.305 47.619 0.00 0.00 37.61 2.87
3503 5978 2.076863 CCTGGTAACTTTGGCGAGAAG 58.923 52.381 0.00 0.00 37.61 2.85
3504 5979 2.076863 CTGGTAACTTTGGCGAGAAGG 58.923 52.381 0.00 0.00 37.61 3.46
3505 5980 1.271163 TGGTAACTTTGGCGAGAAGGG 60.271 52.381 0.00 0.00 37.61 3.95
3506 5981 1.450025 GTAACTTTGGCGAGAAGGGG 58.550 55.000 0.00 0.00 0.00 4.79
3507 5982 1.061546 TAACTTTGGCGAGAAGGGGT 58.938 50.000 0.00 0.00 0.00 4.95
3508 5983 1.061546 AACTTTGGCGAGAAGGGGTA 58.938 50.000 0.00 0.00 0.00 3.69
3509 5984 0.323957 ACTTTGGCGAGAAGGGGTAC 59.676 55.000 0.00 0.00 0.00 3.34
3510 5985 0.613777 CTTTGGCGAGAAGGGGTACT 59.386 55.000 0.00 0.00 0.00 2.73
3511 5986 0.323629 TTTGGCGAGAAGGGGTACTG 59.676 55.000 0.00 0.00 0.00 2.74
3512 5987 0.543410 TTGGCGAGAAGGGGTACTGA 60.543 55.000 0.00 0.00 0.00 3.41
3513 5988 0.543410 TGGCGAGAAGGGGTACTGAA 60.543 55.000 0.00 0.00 0.00 3.02
3514 5989 0.611714 GGCGAGAAGGGGTACTGAAA 59.388 55.000 0.00 0.00 0.00 2.69
3515 5990 1.209747 GGCGAGAAGGGGTACTGAAAT 59.790 52.381 0.00 0.00 0.00 2.17
3516 5991 2.433239 GGCGAGAAGGGGTACTGAAATA 59.567 50.000 0.00 0.00 0.00 1.40
3517 5992 3.071167 GGCGAGAAGGGGTACTGAAATAT 59.929 47.826 0.00 0.00 0.00 1.28
3518 5993 4.282703 GGCGAGAAGGGGTACTGAAATATA 59.717 45.833 0.00 0.00 0.00 0.86
3519 5994 5.228665 GCGAGAAGGGGTACTGAAATATAC 58.771 45.833 0.00 0.00 0.00 1.47
3520 5995 5.780984 CGAGAAGGGGTACTGAAATATACC 58.219 45.833 0.00 0.00 40.25 2.73
3525 6000 3.690475 GGTACTGAAATATACCCCCGG 57.310 52.381 0.00 0.00 35.71 5.73
3526 6001 2.974794 GGTACTGAAATATACCCCCGGT 59.025 50.000 0.00 0.00 40.16 5.28
3527 6002 4.159557 GGTACTGAAATATACCCCCGGTA 58.840 47.826 0.00 0.00 42.80 4.02
3528 6003 4.592778 GGTACTGAAATATACCCCCGGTAA 59.407 45.833 0.00 0.00 41.85 2.85
3529 6004 4.968971 ACTGAAATATACCCCCGGTAAG 57.031 45.455 0.00 0.00 41.85 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.808945 CACAGAGTTGCACTTCCCATC 59.191 52.381 0.00 0.00 0.00 3.51
120 140 3.305720 ACACACACTCTAGACTCCCAAA 58.694 45.455 0.00 0.00 0.00 3.28
121 141 2.891580 GACACACACTCTAGACTCCCAA 59.108 50.000 0.00 0.00 0.00 4.12
122 142 2.158519 TGACACACACTCTAGACTCCCA 60.159 50.000 0.00 0.00 0.00 4.37
124 144 3.612955 GCTTGACACACACTCTAGACTCC 60.613 52.174 0.00 0.00 0.00 3.85
125 145 3.570559 GCTTGACACACACTCTAGACTC 58.429 50.000 0.00 0.00 0.00 3.36
126 146 2.030717 CGCTTGACACACACTCTAGACT 60.031 50.000 0.00 0.00 0.00 3.24
127 147 2.320367 CGCTTGACACACACTCTAGAC 58.680 52.381 0.00 0.00 0.00 2.59
129 149 1.702886 CCGCTTGACACACACTCTAG 58.297 55.000 0.00 0.00 0.00 2.43
130 150 0.319555 GCCGCTTGACACACACTCTA 60.320 55.000 0.00 0.00 0.00 2.43
131 151 1.595382 GCCGCTTGACACACACTCT 60.595 57.895 0.00 0.00 0.00 3.24
135 155 1.653667 CAATGCCGCTTGACACACA 59.346 52.632 0.00 0.00 0.00 3.72
136 156 1.730547 GCAATGCCGCTTGACACAC 60.731 57.895 0.00 0.00 0.00 3.82
137 157 1.855213 GAGCAATGCCGCTTGACACA 61.855 55.000 0.00 0.00 44.01 3.72
138 158 1.154150 GAGCAATGCCGCTTGACAC 60.154 57.895 0.00 0.00 44.01 3.67
139 159 2.679934 CGAGCAATGCCGCTTGACA 61.680 57.895 0.00 0.00 44.92 3.58
140 160 2.099062 CGAGCAATGCCGCTTGAC 59.901 61.111 0.00 0.40 44.92 3.18
142 162 3.434319 ACCGAGCAATGCCGCTTG 61.434 61.111 0.00 0.00 44.01 4.01
143 163 3.434319 CACCGAGCAATGCCGCTT 61.434 61.111 0.00 0.00 44.01 4.68
153 173 3.782244 CAACGCTGAGCACCGAGC 61.782 66.667 4.88 0.00 46.19 5.03
195 219 4.077822 CCAGGAAAAGAAACAGCATCTCT 58.922 43.478 0.00 0.00 0.00 3.10
199 223 5.813513 AAATCCAGGAAAAGAAACAGCAT 57.186 34.783 0.00 0.00 0.00 3.79
200 224 6.323739 AGTTAAATCCAGGAAAAGAAACAGCA 59.676 34.615 0.00 0.00 0.00 4.41
201 225 6.749139 AGTTAAATCCAGGAAAAGAAACAGC 58.251 36.000 0.00 0.00 0.00 4.40
204 352 7.423199 ACGAAGTTAAATCCAGGAAAAGAAAC 58.577 34.615 0.00 0.00 37.78 2.78
208 356 8.494016 AGATACGAAGTTAAATCCAGGAAAAG 57.506 34.615 0.00 0.00 37.78 2.27
214 362 6.346096 TGGGAAGATACGAAGTTAAATCCAG 58.654 40.000 0.00 0.00 37.78 3.86
221 369 4.622220 GCCACTTGGGAAGATACGAAGTTA 60.622 45.833 0.00 0.00 40.37 2.24
230 378 2.912956 TCAGTAAGCCACTTGGGAAGAT 59.087 45.455 0.00 0.00 40.01 2.40
235 383 1.347707 TGAGTCAGTAAGCCACTTGGG 59.652 52.381 0.00 0.00 34.26 4.12
236 384 2.037772 ACTGAGTCAGTAAGCCACTTGG 59.962 50.000 24.36 0.00 43.46 3.61
237 385 3.393089 ACTGAGTCAGTAAGCCACTTG 57.607 47.619 24.36 0.00 43.46 3.16
238 386 4.153411 ACTACTGAGTCAGTAAGCCACTT 58.847 43.478 28.39 6.86 44.80 3.16
239 387 3.768878 ACTACTGAGTCAGTAAGCCACT 58.231 45.455 28.39 7.53 44.80 4.00
240 388 4.458295 TGTACTACTGAGTCAGTAAGCCAC 59.542 45.833 28.39 22.27 44.80 5.01
241 389 4.659115 TGTACTACTGAGTCAGTAAGCCA 58.341 43.478 28.39 21.49 44.80 4.75
242 390 5.640189 TTGTACTACTGAGTCAGTAAGCC 57.360 43.478 28.39 19.66 44.80 4.35
243 391 6.087820 CGTTTTGTACTACTGAGTCAGTAAGC 59.912 42.308 28.39 21.30 44.80 3.09
245 393 7.031226 ACGTTTTGTACTACTGAGTCAGTAA 57.969 36.000 28.39 15.92 44.80 2.24
246 394 6.624352 ACGTTTTGTACTACTGAGTCAGTA 57.376 37.500 27.27 27.27 43.46 2.74
248 396 6.914215 TGTAACGTTTTGTACTACTGAGTCAG 59.086 38.462 18.83 18.83 37.10 3.51
249 397 6.692681 GTGTAACGTTTTGTACTACTGAGTCA 59.307 38.462 5.91 0.00 37.10 3.41
250 398 7.086947 GTGTAACGTTTTGTACTACTGAGTC 57.913 40.000 5.91 0.00 37.10 3.36
272 507 0.581053 GCATTTTGTGGTTTGGCGTG 59.419 50.000 0.00 0.00 0.00 5.34
279 514 0.031994 GCACCGAGCATTTTGTGGTT 59.968 50.000 0.00 0.00 44.79 3.67
306 1578 3.565902 GTGTTGGTTTCAGAGAAGAAGGG 59.434 47.826 0.00 0.00 0.00 3.95
368 1785 2.486982 AGATGTGATGCTTGACAGTTGC 59.513 45.455 0.00 0.00 0.00 4.17
380 1798 2.969238 GGCGCCGGAGATGTGATG 60.969 66.667 12.58 0.00 0.00 3.07
401 1819 3.855379 TGTACGATCGTATTGACAGTTGC 59.145 43.478 29.02 13.51 32.82 4.17
412 1830 4.018649 TCATCGCTTTTGTACGATCGTA 57.981 40.909 23.54 23.54 45.35 3.43
426 1844 4.887987 GCGCCTCTGCTCATCGCT 62.888 66.667 0.00 0.00 42.19 4.93
552 1970 2.529136 TGTGTGAGGGTGGAGGGG 60.529 66.667 0.00 0.00 0.00 4.79
726 2154 4.804868 TTTAACAAGTGATGGCATGCAT 57.195 36.364 21.36 11.12 0.00 3.96
727 2155 4.220163 TCATTTAACAAGTGATGGCATGCA 59.780 37.500 21.36 6.13 0.00 3.96
728 2156 4.746729 TCATTTAACAAGTGATGGCATGC 58.253 39.130 9.90 9.90 0.00 4.06
729 2157 5.125900 TCCTCATTTAACAAGTGATGGCATG 59.874 40.000 3.81 0.00 0.00 4.06
810 2243 2.237534 GAGAGAGAGGGGCACTGCAC 62.238 65.000 0.00 0.00 0.00 4.57
811 2244 1.986757 GAGAGAGAGGGGCACTGCA 60.987 63.158 0.00 0.00 0.00 4.41
812 2245 1.675720 GAGAGAGAGAGGGGCACTGC 61.676 65.000 0.00 0.00 0.00 4.40
813 2246 1.383456 CGAGAGAGAGAGGGGCACTG 61.383 65.000 0.00 0.00 0.00 3.66
814 2247 1.077068 CGAGAGAGAGAGGGGCACT 60.077 63.158 0.00 0.00 0.00 4.40
922 2363 4.538738 AGATATATAGCTCGAGAACCCCC 58.461 47.826 18.75 0.00 0.00 5.40
1169 2624 1.885887 ACCAACACCATTTCCATGACG 59.114 47.619 0.00 0.00 31.07 4.35
1171 2626 3.524095 AGACCAACACCATTTCCATGA 57.476 42.857 0.00 0.00 31.07 3.07
1175 2630 1.686052 TGCAAGACCAACACCATTTCC 59.314 47.619 0.00 0.00 0.00 3.13
1190 2645 1.250328 TCAGCCAGAAACCATGCAAG 58.750 50.000 0.00 0.00 0.00 4.01
1220 2675 2.827051 GCACGCACGCATCCATGAT 61.827 57.895 0.00 0.00 0.00 2.45
1403 2864 4.021456 TCGAGAAAGTAACTGATGGCAGAA 60.021 41.667 0.00 0.00 45.17 3.02
1404 2865 3.509967 TCGAGAAAGTAACTGATGGCAGA 59.490 43.478 0.00 0.00 45.17 4.26
1406 2867 3.953712 TCGAGAAAGTAACTGATGGCA 57.046 42.857 0.00 0.00 0.00 4.92
1407 2868 5.803020 AAATCGAGAAAGTAACTGATGGC 57.197 39.130 0.00 0.00 0.00 4.40
1413 2874 7.962964 TGATGACAAAATCGAGAAAGTAACT 57.037 32.000 0.00 0.00 0.00 2.24
1471 2932 2.407090 TGATGACAGAAACAGCAGTCG 58.593 47.619 0.00 0.00 33.83 4.18
1476 2937 3.427233 GCAGGAATGATGACAGAAACAGC 60.427 47.826 0.00 0.00 0.00 4.40
1506 2971 5.065704 ACGCTAGAGTATATGGATGCAAG 57.934 43.478 0.00 0.00 0.00 4.01
1560 3029 4.703093 TGTCTGATACACCAACGTGAGATA 59.297 41.667 0.00 0.00 43.14 1.98
1658 3137 6.228258 TGGTCACTGGACTAAACTACATTTC 58.772 40.000 0.00 0.00 43.77 2.17
1671 3150 0.039074 CACGAGACTGGTCACTGGAC 60.039 60.000 3.51 0.00 43.55 4.02
1832 3317 0.111878 CACGTACACGCACTTTCACG 60.112 55.000 0.85 0.00 44.43 4.35
1833 3318 0.925466 ACACGTACACGCACTTTCAC 59.075 50.000 0.85 0.00 44.43 3.18
1841 3331 2.932905 CACCCAACACGTACACGC 59.067 61.111 0.85 0.00 44.43 5.34
2131 3621 1.072159 GCTGCTGGTTCAGGACTGT 59.928 57.895 0.00 0.00 34.74 3.55
2208 3698 3.978272 CTCCACTTGAGCTGGTGC 58.022 61.111 0.00 0.00 33.47 5.01
2376 3866 3.686320 GCTGACGCTGCGCTATCG 61.686 66.667 23.51 11.91 39.07 2.92
2560 4053 2.685897 GCTTAAATGCCGTCCCAATGTA 59.314 45.455 0.00 0.00 0.00 2.29
2627 4837 0.034059 ATCATCGATCGGGGTTCAGC 59.966 55.000 16.41 0.00 0.00 4.26
2628 4838 1.341209 TCATCATCGATCGGGGTTCAG 59.659 52.381 16.41 0.12 0.00 3.02
2676 4889 6.593770 TCAGCTCACGCTTAATCATTTTCTTA 59.406 34.615 0.00 0.00 46.47 2.10
2678 4891 4.937620 TCAGCTCACGCTTAATCATTTTCT 59.062 37.500 0.00 0.00 46.47 2.52
2679 4892 5.221891 TCAGCTCACGCTTAATCATTTTC 57.778 39.130 0.00 0.00 46.47 2.29
2744 5219 8.234546 TGGAAATTAGCATTCTCGAAAAAGTAC 58.765 33.333 0.00 0.00 0.00 2.73
2754 5229 3.002759 GCCGACTGGAAATTAGCATTCTC 59.997 47.826 0.00 0.00 37.49 2.87
2755 5230 2.945668 GCCGACTGGAAATTAGCATTCT 59.054 45.455 0.00 0.00 37.49 2.40
2756 5231 2.682856 TGCCGACTGGAAATTAGCATTC 59.317 45.455 0.00 0.00 37.49 2.67
2757 5232 2.684881 CTGCCGACTGGAAATTAGCATT 59.315 45.455 0.00 0.00 37.49 3.56
2758 5233 2.292267 CTGCCGACTGGAAATTAGCAT 58.708 47.619 0.00 0.00 37.49 3.79
2759 5234 1.678728 CCTGCCGACTGGAAATTAGCA 60.679 52.381 0.00 0.00 37.06 3.49
2760 5235 1.017387 CCTGCCGACTGGAAATTAGC 58.983 55.000 0.00 0.00 37.06 3.09
2761 5236 2.691409 TCCTGCCGACTGGAAATTAG 57.309 50.000 0.00 0.00 40.64 1.73
2767 5242 0.250234 CAGATTTCCTGCCGACTGGA 59.750 55.000 0.00 0.00 41.75 3.86
2768 5243 2.772739 CAGATTTCCTGCCGACTGG 58.227 57.895 0.00 0.00 35.89 4.00
2776 5251 2.159476 CGGATGTGTTGCAGATTTCCTG 60.159 50.000 0.00 0.00 45.67 3.86
2777 5252 2.086869 CGGATGTGTTGCAGATTTCCT 58.913 47.619 0.00 0.00 0.00 3.36
2778 5253 1.468054 GCGGATGTGTTGCAGATTTCC 60.468 52.381 0.00 0.00 0.00 3.13
2779 5254 1.199789 TGCGGATGTGTTGCAGATTTC 59.800 47.619 0.00 0.00 34.03 2.17
2780 5255 1.068333 GTGCGGATGTGTTGCAGATTT 60.068 47.619 0.00 0.00 39.67 2.17
2781 5256 0.523072 GTGCGGATGTGTTGCAGATT 59.477 50.000 0.00 0.00 39.67 2.40
2782 5257 0.606130 TGTGCGGATGTGTTGCAGAT 60.606 50.000 0.00 0.00 39.67 2.90
2783 5258 1.227793 TGTGCGGATGTGTTGCAGA 60.228 52.632 0.00 0.00 39.67 4.26
2784 5259 1.081906 GTGTGCGGATGTGTTGCAG 60.082 57.895 0.00 0.00 39.67 4.41
2785 5260 0.250081 TAGTGTGCGGATGTGTTGCA 60.250 50.000 0.00 0.00 36.02 4.08
2786 5261 0.443869 CTAGTGTGCGGATGTGTTGC 59.556 55.000 0.00 0.00 0.00 4.17
2787 5262 0.443869 GCTAGTGTGCGGATGTGTTG 59.556 55.000 0.00 0.00 0.00 3.33
2788 5263 2.840974 GCTAGTGTGCGGATGTGTT 58.159 52.632 0.00 0.00 0.00 3.32
2789 5264 4.598257 GCTAGTGTGCGGATGTGT 57.402 55.556 0.00 0.00 0.00 3.72
2797 5272 1.004918 AGGTGGTTCGCTAGTGTGC 60.005 57.895 2.66 0.00 0.00 4.57
2798 5273 0.317160 TGAGGTGGTTCGCTAGTGTG 59.683 55.000 2.66 0.00 0.00 3.82
2799 5274 0.317479 GTGAGGTGGTTCGCTAGTGT 59.683 55.000 2.66 0.00 0.00 3.55
2800 5275 0.389948 GGTGAGGTGGTTCGCTAGTG 60.390 60.000 0.00 0.00 0.00 2.74
2801 5276 0.542232 AGGTGAGGTGGTTCGCTAGT 60.542 55.000 0.00 0.00 0.00 2.57
2802 5277 1.134560 GTAGGTGAGGTGGTTCGCTAG 59.865 57.143 0.00 0.00 0.00 3.42
2803 5278 1.180029 GTAGGTGAGGTGGTTCGCTA 58.820 55.000 0.00 0.00 0.00 4.26
2804 5279 1.874345 CGTAGGTGAGGTGGTTCGCT 61.874 60.000 0.00 0.00 0.00 4.93
2805 5280 1.445582 CGTAGGTGAGGTGGTTCGC 60.446 63.158 0.00 0.00 0.00 4.70
2806 5281 0.316204 AACGTAGGTGAGGTGGTTCG 59.684 55.000 0.00 0.00 0.00 3.95
2807 5282 1.617357 AGAACGTAGGTGAGGTGGTTC 59.383 52.381 0.00 0.00 35.28 3.62
2808 5283 1.713297 AGAACGTAGGTGAGGTGGTT 58.287 50.000 0.00 0.00 0.00 3.67
2809 5284 1.713297 AAGAACGTAGGTGAGGTGGT 58.287 50.000 0.00 0.00 0.00 4.16
2810 5285 2.833631 AAAGAACGTAGGTGAGGTGG 57.166 50.000 0.00 0.00 0.00 4.61
2830 5305 9.943163 GCCTATTTGCTTTCATTTTTACAAAAA 57.057 25.926 2.57 2.57 41.59 1.94
2831 5306 9.336171 AGCCTATTTGCTTTCATTTTTACAAAA 57.664 25.926 0.00 0.00 38.85 2.44
2832 5307 8.900983 AGCCTATTTGCTTTCATTTTTACAAA 57.099 26.923 0.00 0.00 38.85 2.83
2846 5321 5.775195 AGACAGGTTAAAAAGCCTATTTGCT 59.225 36.000 0.00 0.00 45.43 3.91
2847 5322 6.025749 AGACAGGTTAAAAAGCCTATTTGC 57.974 37.500 0.00 0.00 33.07 3.68
2848 5323 6.434340 AGGAGACAGGTTAAAAAGCCTATTTG 59.566 38.462 0.00 0.00 33.07 2.32
2849 5324 6.552932 AGGAGACAGGTTAAAAAGCCTATTT 58.447 36.000 0.00 0.00 33.07 1.40
2850 5325 6.140968 AGGAGACAGGTTAAAAAGCCTATT 57.859 37.500 0.00 0.00 33.07 1.73
2851 5326 5.780958 AGGAGACAGGTTAAAAAGCCTAT 57.219 39.130 0.00 0.00 33.07 2.57
2852 5327 5.578157 AAGGAGACAGGTTAAAAAGCCTA 57.422 39.130 0.00 0.00 33.07 3.93
2853 5328 4.455070 AAGGAGACAGGTTAAAAAGCCT 57.545 40.909 0.00 0.00 35.04 4.58
2854 5329 5.302059 AGAAAAGGAGACAGGTTAAAAAGCC 59.698 40.000 0.00 0.00 0.00 4.35
2855 5330 6.392625 AGAAAAGGAGACAGGTTAAAAAGC 57.607 37.500 0.00 0.00 0.00 3.51
2856 5331 7.226128 ACGTAGAAAAGGAGACAGGTTAAAAAG 59.774 37.037 0.00 0.00 0.00 2.27
2857 5332 7.049754 ACGTAGAAAAGGAGACAGGTTAAAAA 58.950 34.615 0.00 0.00 0.00 1.94
2858 5333 6.585416 ACGTAGAAAAGGAGACAGGTTAAAA 58.415 36.000 0.00 0.00 0.00 1.52
2859 5334 6.165700 ACGTAGAAAAGGAGACAGGTTAAA 57.834 37.500 0.00 0.00 0.00 1.52
2860 5335 5.796424 ACGTAGAAAAGGAGACAGGTTAA 57.204 39.130 0.00 0.00 0.00 2.01
2861 5336 5.796424 AACGTAGAAAAGGAGACAGGTTA 57.204 39.130 0.00 0.00 0.00 2.85
2862 5337 4.684484 AACGTAGAAAAGGAGACAGGTT 57.316 40.909 0.00 0.00 0.00 3.50
2863 5338 4.377897 CAAACGTAGAAAAGGAGACAGGT 58.622 43.478 0.00 0.00 0.00 4.00
2864 5339 3.186613 GCAAACGTAGAAAAGGAGACAGG 59.813 47.826 0.00 0.00 0.00 4.00
2865 5340 3.807622 TGCAAACGTAGAAAAGGAGACAG 59.192 43.478 0.00 0.00 0.00 3.51
2866 5341 3.558418 GTGCAAACGTAGAAAAGGAGACA 59.442 43.478 0.00 0.00 0.00 3.41
2867 5342 3.558418 TGTGCAAACGTAGAAAAGGAGAC 59.442 43.478 0.00 0.00 0.00 3.36
2868 5343 3.799366 TGTGCAAACGTAGAAAAGGAGA 58.201 40.909 0.00 0.00 0.00 3.71
2869 5344 4.545823 TTGTGCAAACGTAGAAAAGGAG 57.454 40.909 0.00 0.00 0.00 3.69
2870 5345 4.966965 TTTGTGCAAACGTAGAAAAGGA 57.033 36.364 0.00 0.00 0.00 3.36
2871 5346 5.004345 CACTTTTGTGCAAACGTAGAAAAGG 59.996 40.000 17.58 7.47 40.97 3.11
2872 5347 6.008364 CACTTTTGTGCAAACGTAGAAAAG 57.992 37.500 13.78 13.78 44.07 2.27
2887 5362 3.317711 TCGGACATTGCATTCACTTTTGT 59.682 39.130 0.00 0.00 0.00 2.83
2888 5363 3.899734 TCGGACATTGCATTCACTTTTG 58.100 40.909 0.00 0.00 0.00 2.44
2889 5364 4.460382 AGATCGGACATTGCATTCACTTTT 59.540 37.500 0.00 0.00 0.00 2.27
2890 5365 4.012374 AGATCGGACATTGCATTCACTTT 58.988 39.130 0.00 0.00 0.00 2.66
2891 5366 3.614092 AGATCGGACATTGCATTCACTT 58.386 40.909 0.00 0.00 0.00 3.16
2892 5367 3.272574 AGATCGGACATTGCATTCACT 57.727 42.857 0.00 0.00 0.00 3.41
2893 5368 4.361451 AAAGATCGGACATTGCATTCAC 57.639 40.909 0.00 0.00 0.00 3.18
2894 5369 4.142403 GGAAAAGATCGGACATTGCATTCA 60.142 41.667 0.00 0.00 0.00 2.57
2895 5370 4.142403 TGGAAAAGATCGGACATTGCATTC 60.142 41.667 0.00 0.00 0.00 2.67
2896 5371 3.763360 TGGAAAAGATCGGACATTGCATT 59.237 39.130 0.00 0.00 0.00 3.56
2897 5372 3.129287 GTGGAAAAGATCGGACATTGCAT 59.871 43.478 0.00 0.00 0.00 3.96
2898 5373 2.487762 GTGGAAAAGATCGGACATTGCA 59.512 45.455 0.00 0.00 0.00 4.08
2899 5374 2.487762 TGTGGAAAAGATCGGACATTGC 59.512 45.455 0.00 0.00 0.00 3.56
2900 5375 3.753272 AGTGTGGAAAAGATCGGACATTG 59.247 43.478 0.00 0.00 0.00 2.82
2901 5376 4.021102 AGTGTGGAAAAGATCGGACATT 57.979 40.909 0.00 0.00 0.00 2.71
2902 5377 3.703001 AGTGTGGAAAAGATCGGACAT 57.297 42.857 0.00 0.00 0.00 3.06
2903 5378 3.485463 AAGTGTGGAAAAGATCGGACA 57.515 42.857 0.00 0.00 0.00 4.02
2904 5379 4.995487 ACTTAAGTGTGGAAAAGATCGGAC 59.005 41.667 7.48 0.00 0.00 4.79
2905 5380 5.223449 ACTTAAGTGTGGAAAAGATCGGA 57.777 39.130 7.48 0.00 0.00 4.55
2906 5381 6.395629 TCTACTTAAGTGTGGAAAAGATCGG 58.604 40.000 18.56 0.00 0.00 4.18
2907 5382 8.480643 AATCTACTTAAGTGTGGAAAAGATCG 57.519 34.615 18.56 0.00 31.49 3.69
2924 5399 9.152595 GAGACGAGTTGGAAAAATAATCTACTT 57.847 33.333 0.00 0.00 0.00 2.24
2925 5400 7.488471 CGAGACGAGTTGGAAAAATAATCTACT 59.512 37.037 0.00 0.00 0.00 2.57
2926 5401 7.487189 TCGAGACGAGTTGGAAAAATAATCTAC 59.513 37.037 0.00 0.00 0.00 2.59
2927 5402 7.541162 TCGAGACGAGTTGGAAAAATAATCTA 58.459 34.615 0.00 0.00 0.00 1.98
2928 5403 6.395629 TCGAGACGAGTTGGAAAAATAATCT 58.604 36.000 0.00 0.00 0.00 2.40
2929 5404 6.642683 TCGAGACGAGTTGGAAAAATAATC 57.357 37.500 0.00 0.00 0.00 1.75
2944 5419 2.613730 GTGTCATCAACTCGAGACGA 57.386 50.000 21.68 14.94 33.83 4.20
3450 5925 3.570926 AAGTTATCGCGTCTCTTCACA 57.429 42.857 5.77 0.00 0.00 3.58
3451 5926 4.085517 GCATAAGTTATCGCGTCTCTTCAC 60.086 45.833 5.77 0.00 0.00 3.18
3452 5927 4.042398 GCATAAGTTATCGCGTCTCTTCA 58.958 43.478 5.77 0.00 0.00 3.02
3453 5928 4.042398 TGCATAAGTTATCGCGTCTCTTC 58.958 43.478 5.77 0.00 0.00 2.87
3454 5929 3.797256 GTGCATAAGTTATCGCGTCTCTT 59.203 43.478 5.77 9.57 0.00 2.85
3455 5930 3.372954 GTGCATAAGTTATCGCGTCTCT 58.627 45.455 5.77 0.00 0.00 3.10
3456 5931 2.471743 GGTGCATAAGTTATCGCGTCTC 59.528 50.000 5.77 0.00 0.00 3.36
3457 5932 2.470821 GGTGCATAAGTTATCGCGTCT 58.529 47.619 5.77 0.00 0.00 4.18
3458 5933 1.525619 GGGTGCATAAGTTATCGCGTC 59.474 52.381 5.77 0.00 0.00 5.19
3459 5934 1.578583 GGGTGCATAAGTTATCGCGT 58.421 50.000 5.77 0.00 0.00 6.01
3460 5935 0.865769 GGGGTGCATAAGTTATCGCG 59.134 55.000 0.00 0.00 0.00 5.87
3461 5936 0.865769 CGGGGTGCATAAGTTATCGC 59.134 55.000 0.00 9.18 0.00 4.58
3462 5937 1.202604 ACCGGGGTGCATAAGTTATCG 60.203 52.381 6.32 0.00 0.00 2.92
3463 5938 2.490991 GACCGGGGTGCATAAGTTATC 58.509 52.381 6.32 0.00 0.00 1.75
3464 5939 1.142262 GGACCGGGGTGCATAAGTTAT 59.858 52.381 6.32 0.00 36.45 1.89
3465 5940 0.542805 GGACCGGGGTGCATAAGTTA 59.457 55.000 6.32 0.00 36.45 2.24
3466 5941 1.205460 AGGACCGGGGTGCATAAGTT 61.205 55.000 6.32 0.00 38.98 2.66
3467 5942 1.615424 AGGACCGGGGTGCATAAGT 60.615 57.895 6.32 0.00 38.98 2.24
3468 5943 1.153168 CAGGACCGGGGTGCATAAG 60.153 63.158 6.32 0.00 38.98 1.73
3469 5944 2.675242 CCAGGACCGGGGTGCATAA 61.675 63.158 6.32 0.00 38.98 1.90
3470 5945 2.533037 TACCAGGACCGGGGTGCATA 62.533 60.000 15.72 0.00 38.98 3.14
3471 5946 3.935456 TACCAGGACCGGGGTGCAT 62.935 63.158 15.72 0.00 38.98 3.96
3472 5947 4.642488 TACCAGGACCGGGGTGCA 62.642 66.667 15.72 0.00 38.98 4.57
3473 5948 3.324108 TTACCAGGACCGGGGTGC 61.324 66.667 15.72 0.47 38.06 5.01
3474 5949 1.486145 AAGTTACCAGGACCGGGGTG 61.486 60.000 15.72 0.00 38.06 4.61
3475 5950 0.769386 AAAGTTACCAGGACCGGGGT 60.769 55.000 15.72 14.95 41.21 4.95
3476 5951 0.322187 CAAAGTTACCAGGACCGGGG 60.322 60.000 15.72 9.57 0.00 5.73
3477 5952 0.322187 CCAAAGTTACCAGGACCGGG 60.322 60.000 9.42 9.42 0.00 5.73
3478 5953 0.958876 GCCAAAGTTACCAGGACCGG 60.959 60.000 0.00 0.00 0.00 5.28
3479 5954 1.296056 CGCCAAAGTTACCAGGACCG 61.296 60.000 0.00 0.00 0.00 4.79
3480 5955 0.035739 TCGCCAAAGTTACCAGGACC 59.964 55.000 0.00 0.00 0.00 4.46
3481 5956 1.001633 TCTCGCCAAAGTTACCAGGAC 59.998 52.381 0.00 0.00 0.00 3.85
3482 5957 1.344065 TCTCGCCAAAGTTACCAGGA 58.656 50.000 0.00 0.00 0.00 3.86
3483 5958 2.076863 CTTCTCGCCAAAGTTACCAGG 58.923 52.381 0.00 0.00 0.00 4.45
3484 5959 2.076863 CCTTCTCGCCAAAGTTACCAG 58.923 52.381 0.00 0.00 0.00 4.00
3485 5960 1.271163 CCCTTCTCGCCAAAGTTACCA 60.271 52.381 0.00 0.00 0.00 3.25
3486 5961 1.450025 CCCTTCTCGCCAAAGTTACC 58.550 55.000 0.00 0.00 0.00 2.85
3487 5962 1.271217 ACCCCTTCTCGCCAAAGTTAC 60.271 52.381 0.00 0.00 0.00 2.50
3488 5963 1.061546 ACCCCTTCTCGCCAAAGTTA 58.938 50.000 0.00 0.00 0.00 2.24
3489 5964 1.061546 TACCCCTTCTCGCCAAAGTT 58.938 50.000 0.00 0.00 0.00 2.66
3490 5965 0.323957 GTACCCCTTCTCGCCAAAGT 59.676 55.000 0.00 0.00 0.00 2.66
3491 5966 0.613777 AGTACCCCTTCTCGCCAAAG 59.386 55.000 0.00 0.00 0.00 2.77
3492 5967 0.323629 CAGTACCCCTTCTCGCCAAA 59.676 55.000 0.00 0.00 0.00 3.28
3493 5968 0.543410 TCAGTACCCCTTCTCGCCAA 60.543 55.000 0.00 0.00 0.00 4.52
3494 5969 0.543410 TTCAGTACCCCTTCTCGCCA 60.543 55.000 0.00 0.00 0.00 5.69
3495 5970 0.611714 TTTCAGTACCCCTTCTCGCC 59.388 55.000 0.00 0.00 0.00 5.54
3496 5971 2.693267 ATTTCAGTACCCCTTCTCGC 57.307 50.000 0.00 0.00 0.00 5.03
3497 5972 5.780984 GGTATATTTCAGTACCCCTTCTCG 58.219 45.833 0.00 0.00 35.40 4.04
3505 5980 2.974794 ACCGGGGGTATATTTCAGTACC 59.025 50.000 6.32 0.00 39.69 3.34
3506 5981 5.787380 CTTACCGGGGGTATATTTCAGTAC 58.213 45.833 6.32 0.00 38.05 2.73
3508 5983 4.968971 CTTACCGGGGGTATATTTCAGT 57.031 45.455 6.32 0.00 38.05 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.