Multiple sequence alignment - TraesCS4D01G190700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G190700 chr4D 100.000 4151 0 0 1 4151 333878620 333874470 0.000000e+00 7666.0
1 TraesCS4D01G190700 chr4D 97.619 84 0 2 3556 3639 333874984 333874903 4.330000e-30 143.0
2 TraesCS4D01G190700 chr4D 97.619 84 0 2 3637 3718 333875065 333874982 4.330000e-30 143.0
3 TraesCS4D01G190700 chr4A 94.279 2919 80 21 752 3642 139713561 139716420 0.000000e+00 4385.0
4 TraesCS4D01G190700 chr4A 89.414 529 36 11 3639 4151 139716337 139716861 0.000000e+00 649.0
5 TraesCS4D01G190700 chr4A 89.318 337 31 4 336 668 139640164 139640499 6.420000e-113 418.0
6 TraesCS4D01G190700 chr4A 93.750 48 3 0 3685 3732 139716434 139716481 5.760000e-09 73.1
7 TraesCS4D01G190700 chr4A 100.000 33 0 0 3606 3638 139716434 139716466 1.250000e-05 62.1
8 TraesCS4D01G190700 chr4B 97.002 1668 48 2 1976 3642 411793669 411792003 0.000000e+00 2802.0
9 TraesCS4D01G190700 chr4B 92.998 1471 80 11 335 1782 411795250 411793780 0.000000e+00 2124.0
10 TraesCS4D01G190700 chr4B 93.629 518 26 6 3637 4151 411792088 411791575 0.000000e+00 767.0
11 TraesCS4D01G190700 chr4B 96.471 85 3 0 1810 1894 411793778 411793694 1.560000e-29 141.0
12 TraesCS4D01G190700 chr7D 90.244 369 11 1 1 344 448691897 448691529 3.780000e-125 459.0
13 TraesCS4D01G190700 chr7D 100.000 37 0 0 306 342 448695750 448695786 7.450000e-08 69.4
14 TraesCS4D01G190700 chr3A 83.090 343 49 7 333 668 550705796 550705456 1.880000e-78 303.0
15 TraesCS4D01G190700 chr5D 83.129 326 48 6 349 668 322779174 322778850 1.460000e-74 291.0
16 TraesCS4D01G190700 chr5D 90.476 63 5 1 695 756 212121710 212121772 9.560000e-12 82.4
17 TraesCS4D01G190700 chr5A 82.263 327 50 7 349 668 631104502 631104827 4.090000e-70 276.0
18 TraesCS4D01G190700 chr5A 90.476 63 5 1 695 756 275222971 275223033 9.560000e-12 82.4
19 TraesCS4D01G190700 chr5B 82.263 327 49 8 349 668 374437855 374437531 1.470000e-69 274.0
20 TraesCS4D01G190700 chr2B 83.942 274 39 5 333 603 83962179 83962450 1.480000e-64 257.0
21 TraesCS4D01G190700 chr1B 80.923 325 56 5 349 668 609852802 609852479 6.890000e-63 252.0
22 TraesCS4D01G190700 chr3D 80.734 327 54 6 349 668 225483812 225483488 3.200000e-61 246.0
23 TraesCS4D01G190700 chr1D 90.476 63 5 1 695 756 346910378 346910440 9.560000e-12 82.4
24 TraesCS4D01G190700 chr7A 89.062 64 6 1 694 756 244400675 244400612 1.240000e-10 78.7
25 TraesCS4D01G190700 chr7A 88.889 63 6 1 695 756 172370412 172370474 4.450000e-10 76.8
26 TraesCS4D01G190700 chr2D 88.525 61 6 1 697 756 334147431 334147371 5.760000e-09 73.1
27 TraesCS4D01G190700 chr2A 87.500 64 7 1 694 756 673413899 673413962 5.760000e-09 73.1
28 TraesCS4D01G190700 chr7B 87.500 64 5 3 695 756 105742456 105742518 2.070000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G190700 chr4D 333874470 333878620 4150 True 2650.666667 7666 98.412667 1 4151 3 chr4D.!!$R1 4150
1 TraesCS4D01G190700 chr4A 139713561 139716861 3300 False 1292.300000 4385 94.360750 752 4151 4 chr4A.!!$F2 3399
2 TraesCS4D01G190700 chr4B 411791575 411795250 3675 True 1458.500000 2802 95.025000 335 4151 4 chr4B.!!$R1 3816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.032815 TGATCTTTGACACGGCGACA 59.967 50.0 16.62 8.06 0.00 4.35 F
287 288 0.038892 AAGTTTCCTTACGCTCGCGA 60.039 50.0 18.98 9.26 42.83 5.87 F
288 289 0.172803 AGTTTCCTTACGCTCGCGAT 59.827 50.0 18.98 0.00 42.83 4.58 F
690 708 0.398696 TAGTTTCCACACATGCGGGT 59.601 50.0 0.00 0.00 0.00 5.28 F
1529 1565 0.674895 ATTGCTGACCAGGCGAGTTC 60.675 55.0 0.00 0.00 0.00 3.01 F
2277 2319 0.385029 TGTTGTCCAGTGCATGTTGC 59.615 50.0 0.00 0.00 45.29 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 1675 0.712380 TACGGTCCCCTACTTTCCCT 59.288 55.000 0.00 0.00 0.00 4.20 R
1807 1849 0.737219 GCGCTCAGCTCATTTGGATT 59.263 50.000 0.00 0.00 44.04 3.01 R
1808 1850 2.401967 GCGCTCAGCTCATTTGGAT 58.598 52.632 0.00 0.00 44.04 3.41 R
1821 1863 3.053455 GGTATCAGTGTATTGAGCGCTC 58.947 50.000 30.42 30.42 0.00 5.03 R
3000 3044 1.067060 CTCATGCGGTTCGTGATAGGA 59.933 52.381 0.00 0.00 39.78 2.94 R
3638 3685 0.107017 CCCATGAGACAAATCCCGCT 60.107 55.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.419198 AGTCGCCGATGCAGATCC 59.581 61.111 0.00 0.00 37.32 3.36
18 19 2.106938 GTCGCCGATGCAGATCCA 59.893 61.111 0.00 0.00 37.32 3.41
19 20 2.106938 TCGCCGATGCAGATCCAC 59.893 61.111 0.00 0.00 37.32 4.02
20 21 2.969238 CGCCGATGCAGATCCACC 60.969 66.667 0.00 0.00 37.32 4.61
21 22 2.507944 GCCGATGCAGATCCACCT 59.492 61.111 0.00 0.00 37.47 4.00
22 23 1.890979 GCCGATGCAGATCCACCTG 60.891 63.158 0.00 0.00 37.47 4.00
23 24 1.825341 CCGATGCAGATCCACCTGA 59.175 57.895 0.00 0.00 36.29 3.86
24 25 0.249784 CCGATGCAGATCCACCTGAG 60.250 60.000 0.00 0.00 36.29 3.35
25 26 0.463204 CGATGCAGATCCACCTGAGT 59.537 55.000 0.00 0.00 36.29 3.41
26 27 1.683385 CGATGCAGATCCACCTGAGTA 59.317 52.381 0.00 0.00 36.29 2.59
27 28 2.101415 CGATGCAGATCCACCTGAGTAA 59.899 50.000 0.00 0.00 36.29 2.24
28 29 3.430790 CGATGCAGATCCACCTGAGTAAA 60.431 47.826 0.00 0.00 36.29 2.01
29 30 4.517285 GATGCAGATCCACCTGAGTAAAA 58.483 43.478 0.00 0.00 36.29 1.52
30 31 4.365514 TGCAGATCCACCTGAGTAAAAA 57.634 40.909 0.00 0.00 36.29 1.94
31 32 4.326826 TGCAGATCCACCTGAGTAAAAAG 58.673 43.478 0.00 0.00 36.29 2.27
32 33 3.691609 GCAGATCCACCTGAGTAAAAAGG 59.308 47.826 0.00 0.00 39.65 3.11
41 42 6.884280 ACCTGAGTAAAAAGGTGATCTTTG 57.116 37.500 0.00 0.00 45.26 2.77
42 43 6.601332 ACCTGAGTAAAAAGGTGATCTTTGA 58.399 36.000 0.00 0.00 45.26 2.69
43 44 6.486993 ACCTGAGTAAAAAGGTGATCTTTGAC 59.513 38.462 0.00 0.00 45.26 3.18
44 45 6.486657 CCTGAGTAAAAAGGTGATCTTTGACA 59.513 38.462 0.00 0.00 44.30 3.58
45 46 7.259290 TGAGTAAAAAGGTGATCTTTGACAC 57.741 36.000 0.00 0.00 44.30 3.67
46 47 6.018262 TGAGTAAAAAGGTGATCTTTGACACG 60.018 38.462 0.00 0.00 44.30 4.49
47 48 4.568152 AAAAAGGTGATCTTTGACACGG 57.432 40.909 0.00 0.00 44.30 4.94
48 49 1.523758 AAGGTGATCTTTGACACGGC 58.476 50.000 0.00 0.00 37.82 5.68
49 50 0.670546 AGGTGATCTTTGACACGGCG 60.671 55.000 4.80 4.80 37.82 6.46
50 51 0.669318 GGTGATCTTTGACACGGCGA 60.669 55.000 16.62 0.00 37.82 5.54
51 52 0.438830 GTGATCTTTGACACGGCGAC 59.561 55.000 16.62 5.15 0.00 5.19
52 53 0.032815 TGATCTTTGACACGGCGACA 59.967 50.000 16.62 8.06 0.00 4.35
53 54 0.438830 GATCTTTGACACGGCGACAC 59.561 55.000 16.62 4.35 0.00 3.67
54 55 0.949105 ATCTTTGACACGGCGACACC 60.949 55.000 16.62 0.00 0.00 4.16
55 56 1.885388 CTTTGACACGGCGACACCA 60.885 57.895 16.62 2.65 39.03 4.17
56 57 1.227704 TTTGACACGGCGACACCAT 60.228 52.632 16.62 0.00 39.03 3.55
57 58 1.225376 TTTGACACGGCGACACCATC 61.225 55.000 16.62 1.84 39.03 3.51
58 59 2.094757 TTGACACGGCGACACCATCT 62.095 55.000 16.62 0.00 39.03 2.90
59 60 1.374252 GACACGGCGACACCATCTT 60.374 57.895 16.62 0.00 39.03 2.40
60 61 0.949105 GACACGGCGACACCATCTTT 60.949 55.000 16.62 0.00 39.03 2.52
61 62 1.227999 ACACGGCGACACCATCTTTG 61.228 55.000 16.62 0.00 39.03 2.77
63 64 1.375396 CGGCGACACCATCTTTGGA 60.375 57.895 0.00 0.00 46.92 3.53
64 65 1.361668 CGGCGACACCATCTTTGGAG 61.362 60.000 0.00 0.00 46.92 3.86
65 66 1.026718 GGCGACACCATCTTTGGAGG 61.027 60.000 0.00 0.00 46.92 4.30
66 67 1.026718 GCGACACCATCTTTGGAGGG 61.027 60.000 0.00 0.00 46.92 4.30
67 68 0.392998 CGACACCATCTTTGGAGGGG 60.393 60.000 0.00 0.00 46.58 4.79
68 69 0.991920 GACACCATCTTTGGAGGGGA 59.008 55.000 0.00 0.00 46.58 4.81
69 70 0.995024 ACACCATCTTTGGAGGGGAG 59.005 55.000 0.00 0.00 46.58 4.30
70 71 0.995024 CACCATCTTTGGAGGGGAGT 59.005 55.000 0.00 0.00 46.58 3.85
71 72 0.995024 ACCATCTTTGGAGGGGAGTG 59.005 55.000 0.00 0.00 46.58 3.51
72 73 0.257039 CCATCTTTGGAGGGGAGTGG 59.743 60.000 0.00 0.00 46.92 4.00
73 74 0.257039 CATCTTTGGAGGGGAGTGGG 59.743 60.000 0.00 0.00 0.00 4.61
74 75 0.178831 ATCTTTGGAGGGGAGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
75 76 1.133809 TCTTTGGAGGGGAGTGGGTG 61.134 60.000 0.00 0.00 0.00 4.61
76 77 1.073319 TTTGGAGGGGAGTGGGTGA 60.073 57.895 0.00 0.00 0.00 4.02
77 78 1.133809 TTTGGAGGGGAGTGGGTGAG 61.134 60.000 0.00 0.00 0.00 3.51
78 79 3.403558 GGAGGGGAGTGGGTGAGC 61.404 72.222 0.00 0.00 0.00 4.26
79 80 3.775654 GAGGGGAGTGGGTGAGCG 61.776 72.222 0.00 0.00 0.00 5.03
80 81 4.316823 AGGGGAGTGGGTGAGCGA 62.317 66.667 0.00 0.00 0.00 4.93
81 82 3.775654 GGGGAGTGGGTGAGCGAG 61.776 72.222 0.00 0.00 0.00 5.03
82 83 3.775654 GGGAGTGGGTGAGCGAGG 61.776 72.222 0.00 0.00 0.00 4.63
83 84 3.775654 GGAGTGGGTGAGCGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
84 85 3.775654 GAGTGGGTGAGCGAGGGG 61.776 72.222 0.00 0.00 0.00 4.79
85 86 4.316823 AGTGGGTGAGCGAGGGGA 62.317 66.667 0.00 0.00 0.00 4.81
86 87 3.319198 GTGGGTGAGCGAGGGGAA 61.319 66.667 0.00 0.00 0.00 3.97
87 88 2.285368 TGGGTGAGCGAGGGGAAT 60.285 61.111 0.00 0.00 0.00 3.01
88 89 2.190578 GGGTGAGCGAGGGGAATG 59.809 66.667 0.00 0.00 0.00 2.67
89 90 2.190578 GGTGAGCGAGGGGAATGG 59.809 66.667 0.00 0.00 0.00 3.16
90 91 2.190578 GTGAGCGAGGGGAATGGG 59.809 66.667 0.00 0.00 0.00 4.00
91 92 2.040442 TGAGCGAGGGGAATGGGA 59.960 61.111 0.00 0.00 0.00 4.37
92 93 1.384502 TGAGCGAGGGGAATGGGAT 60.385 57.895 0.00 0.00 0.00 3.85
93 94 0.105194 TGAGCGAGGGGAATGGGATA 60.105 55.000 0.00 0.00 0.00 2.59
94 95 0.610687 GAGCGAGGGGAATGGGATAG 59.389 60.000 0.00 0.00 0.00 2.08
95 96 0.838122 AGCGAGGGGAATGGGATAGG 60.838 60.000 0.00 0.00 0.00 2.57
96 97 0.836400 GCGAGGGGAATGGGATAGGA 60.836 60.000 0.00 0.00 0.00 2.94
97 98 1.270907 CGAGGGGAATGGGATAGGAG 58.729 60.000 0.00 0.00 0.00 3.69
98 99 1.203187 CGAGGGGAATGGGATAGGAGA 60.203 57.143 0.00 0.00 0.00 3.71
99 100 2.261729 GAGGGGAATGGGATAGGAGAC 58.738 57.143 0.00 0.00 0.00 3.36
100 101 0.977395 GGGGAATGGGATAGGAGACG 59.023 60.000 0.00 0.00 0.00 4.18
101 102 0.321996 GGGAATGGGATAGGAGACGC 59.678 60.000 0.00 0.00 0.00 5.19
102 103 1.343069 GGAATGGGATAGGAGACGCT 58.657 55.000 0.00 0.00 0.00 5.07
103 104 1.001406 GGAATGGGATAGGAGACGCTG 59.999 57.143 0.00 0.00 0.00 5.18
104 105 1.964223 GAATGGGATAGGAGACGCTGA 59.036 52.381 0.00 0.00 0.00 4.26
105 106 1.333177 ATGGGATAGGAGACGCTGAC 58.667 55.000 0.00 0.00 0.00 3.51
107 108 0.818445 GGGATAGGAGACGCTGACGA 60.818 60.000 0.00 0.00 43.93 4.20
108 109 0.589223 GGATAGGAGACGCTGACGAG 59.411 60.000 0.00 0.00 43.93 4.18
109 110 1.584175 GATAGGAGACGCTGACGAGA 58.416 55.000 0.00 0.00 43.93 4.04
110 111 1.529438 GATAGGAGACGCTGACGAGAG 59.471 57.143 0.00 0.00 43.93 3.20
111 112 0.462225 TAGGAGACGCTGACGAGAGG 60.462 60.000 0.00 0.00 43.93 3.69
112 113 2.766400 GGAGACGCTGACGAGAGGG 61.766 68.421 0.00 0.00 43.93 4.30
113 114 1.745864 GAGACGCTGACGAGAGGGA 60.746 63.158 8.94 0.00 43.93 4.20
114 115 1.711060 GAGACGCTGACGAGAGGGAG 61.711 65.000 8.94 0.00 43.93 4.30
115 116 2.752238 ACGCTGACGAGAGGGAGG 60.752 66.667 8.94 0.00 43.93 4.30
116 117 4.200283 CGCTGACGAGAGGGAGGC 62.200 72.222 0.00 0.00 43.93 4.70
117 118 4.200283 GCTGACGAGAGGGAGGCG 62.200 72.222 0.00 0.00 0.00 5.52
118 119 3.522731 CTGACGAGAGGGAGGCGG 61.523 72.222 0.00 0.00 0.00 6.13
136 137 4.517703 GGACGACGCCGACGAGAG 62.518 72.222 16.72 0.00 43.93 3.20
137 138 4.517703 GACGACGCCGACGAGAGG 62.518 72.222 16.72 0.00 43.93 3.69
169 170 4.918201 GCCGGCGAGAGGAATGGG 62.918 72.222 12.58 0.00 0.00 4.00
170 171 3.470888 CCGGCGAGAGGAATGGGT 61.471 66.667 9.30 0.00 0.00 4.51
171 172 2.202932 CGGCGAGAGGAATGGGTG 60.203 66.667 0.00 0.00 0.00 4.61
172 173 2.721167 CGGCGAGAGGAATGGGTGA 61.721 63.158 0.00 0.00 0.00 4.02
173 174 1.144936 GGCGAGAGGAATGGGTGAG 59.855 63.158 0.00 0.00 0.00 3.51
174 175 1.617947 GGCGAGAGGAATGGGTGAGT 61.618 60.000 0.00 0.00 0.00 3.41
175 176 0.250513 GCGAGAGGAATGGGTGAGTT 59.749 55.000 0.00 0.00 0.00 3.01
176 177 2.009042 GCGAGAGGAATGGGTGAGTTG 61.009 57.143 0.00 0.00 0.00 3.16
177 178 1.276421 CGAGAGGAATGGGTGAGTTGT 59.724 52.381 0.00 0.00 0.00 3.32
178 179 2.496070 CGAGAGGAATGGGTGAGTTGTA 59.504 50.000 0.00 0.00 0.00 2.41
179 180 3.429547 CGAGAGGAATGGGTGAGTTGTAG 60.430 52.174 0.00 0.00 0.00 2.74
180 181 3.769844 GAGAGGAATGGGTGAGTTGTAGA 59.230 47.826 0.00 0.00 0.00 2.59
181 182 3.772025 AGAGGAATGGGTGAGTTGTAGAG 59.228 47.826 0.00 0.00 0.00 2.43
182 183 3.769844 GAGGAATGGGTGAGTTGTAGAGA 59.230 47.826 0.00 0.00 0.00 3.10
183 184 3.772025 AGGAATGGGTGAGTTGTAGAGAG 59.228 47.826 0.00 0.00 0.00 3.20
184 185 3.118592 GGAATGGGTGAGTTGTAGAGAGG 60.119 52.174 0.00 0.00 0.00 3.69
185 186 1.267121 TGGGTGAGTTGTAGAGAGGC 58.733 55.000 0.00 0.00 0.00 4.70
186 187 1.203187 TGGGTGAGTTGTAGAGAGGCT 60.203 52.381 0.00 0.00 0.00 4.58
187 188 1.205893 GGGTGAGTTGTAGAGAGGCTG 59.794 57.143 0.00 0.00 0.00 4.85
188 189 1.205893 GGTGAGTTGTAGAGAGGCTGG 59.794 57.143 0.00 0.00 0.00 4.85
189 190 0.898320 TGAGTTGTAGAGAGGCTGGC 59.102 55.000 0.00 0.00 0.00 4.85
190 191 0.179124 GAGTTGTAGAGAGGCTGGCG 60.179 60.000 0.00 0.00 0.00 5.69
191 192 0.612174 AGTTGTAGAGAGGCTGGCGA 60.612 55.000 0.00 0.00 0.00 5.54
192 193 0.179124 GTTGTAGAGAGGCTGGCGAG 60.179 60.000 0.00 0.00 0.00 5.03
193 194 1.323271 TTGTAGAGAGGCTGGCGAGG 61.323 60.000 0.00 0.00 0.00 4.63
194 195 2.123683 TAGAGAGGCTGGCGAGGG 60.124 66.667 0.00 0.00 0.00 4.30
195 196 2.690734 TAGAGAGGCTGGCGAGGGA 61.691 63.158 0.00 0.00 0.00 4.20
196 197 2.224805 TAGAGAGGCTGGCGAGGGAA 62.225 60.000 0.00 0.00 0.00 3.97
197 198 2.607750 AGAGGCTGGCGAGGGAAA 60.608 61.111 0.00 0.00 0.00 3.13
198 199 2.185310 GAGAGGCTGGCGAGGGAAAA 62.185 60.000 0.00 0.00 0.00 2.29
199 200 1.746991 GAGGCTGGCGAGGGAAAAG 60.747 63.158 0.00 0.00 0.00 2.27
200 201 2.034221 GGCTGGCGAGGGAAAAGT 59.966 61.111 0.00 0.00 0.00 2.66
201 202 2.335712 GGCTGGCGAGGGAAAAGTG 61.336 63.158 0.00 0.00 0.00 3.16
202 203 1.302511 GCTGGCGAGGGAAAAGTGA 60.303 57.895 0.00 0.00 0.00 3.41
203 204 1.301677 GCTGGCGAGGGAAAAGTGAG 61.302 60.000 0.00 0.00 0.00 3.51
204 205 1.301677 CTGGCGAGGGAAAAGTGAGC 61.302 60.000 0.00 0.00 0.00 4.26
205 206 1.003233 GGCGAGGGAAAAGTGAGCT 60.003 57.895 0.00 0.00 0.00 4.09
206 207 0.606673 GGCGAGGGAAAAGTGAGCTT 60.607 55.000 0.00 0.00 36.30 3.74
207 208 1.338769 GGCGAGGGAAAAGTGAGCTTA 60.339 52.381 0.00 0.00 33.95 3.09
208 209 1.732809 GCGAGGGAAAAGTGAGCTTAC 59.267 52.381 0.00 0.00 33.95 2.34
209 210 2.870435 GCGAGGGAAAAGTGAGCTTACA 60.870 50.000 11.65 0.00 33.95 2.41
210 211 2.996621 CGAGGGAAAAGTGAGCTTACAG 59.003 50.000 11.65 0.00 33.95 2.74
211 212 3.306088 CGAGGGAAAAGTGAGCTTACAGA 60.306 47.826 11.65 0.00 33.95 3.41
212 213 4.249661 GAGGGAAAAGTGAGCTTACAGAG 58.750 47.826 11.65 0.00 33.95 3.35
213 214 3.008485 AGGGAAAAGTGAGCTTACAGAGG 59.992 47.826 11.65 0.00 33.95 3.69
214 215 3.008049 GGGAAAAGTGAGCTTACAGAGGA 59.992 47.826 11.65 0.00 33.95 3.71
215 216 4.249661 GGAAAAGTGAGCTTACAGAGGAG 58.750 47.826 11.65 0.00 33.95 3.69
216 217 3.326836 AAAGTGAGCTTACAGAGGAGC 57.673 47.619 11.65 0.00 39.17 4.70
217 218 0.814457 AGTGAGCTTACAGAGGAGCG 59.186 55.000 11.65 0.00 43.53 5.03
218 219 0.179124 GTGAGCTTACAGAGGAGCGG 60.179 60.000 3.32 0.00 43.53 5.52
219 220 1.323271 TGAGCTTACAGAGGAGCGGG 61.323 60.000 0.00 0.00 43.53 6.13
220 221 2.202946 GCTTACAGAGGAGCGGGC 60.203 66.667 0.00 0.00 0.00 6.13
221 222 2.105128 CTTACAGAGGAGCGGGCG 59.895 66.667 0.00 0.00 0.00 6.13
222 223 2.361992 TTACAGAGGAGCGGGCGA 60.362 61.111 0.00 0.00 0.00 5.54
223 224 2.343163 CTTACAGAGGAGCGGGCGAG 62.343 65.000 0.00 0.00 0.00 5.03
230 231 4.918201 GAGCGGGCGAGGGGAATG 62.918 72.222 0.00 0.00 0.00 2.67
234 235 3.878667 GGGCGAGGGGAATGGGAG 61.879 72.222 0.00 0.00 0.00 4.30
235 236 4.570874 GGCGAGGGGAATGGGAGC 62.571 72.222 0.00 0.00 0.00 4.70
236 237 3.483869 GCGAGGGGAATGGGAGCT 61.484 66.667 0.00 0.00 0.00 4.09
237 238 2.507944 CGAGGGGAATGGGAGCTG 59.492 66.667 0.00 0.00 0.00 4.24
238 239 2.370445 CGAGGGGAATGGGAGCTGT 61.370 63.158 0.00 0.00 0.00 4.40
239 240 1.529309 GAGGGGAATGGGAGCTGTC 59.471 63.158 0.00 0.00 0.00 3.51
240 241 2.190578 GGGGAATGGGAGCTGTCG 59.809 66.667 0.00 0.00 0.00 4.35
241 242 2.190578 GGGAATGGGAGCTGTCGG 59.809 66.667 0.00 0.00 0.00 4.79
242 243 2.190578 GGAATGGGAGCTGTCGGG 59.809 66.667 0.00 0.00 0.00 5.14
243 244 2.190578 GAATGGGAGCTGTCGGGG 59.809 66.667 0.00 0.00 0.00 5.73
244 245 2.610859 AATGGGAGCTGTCGGGGT 60.611 61.111 0.00 0.00 0.00 4.95
245 246 2.876368 GAATGGGAGCTGTCGGGGTG 62.876 65.000 0.00 0.00 0.00 4.61
246 247 3.924013 ATGGGAGCTGTCGGGGTGA 62.924 63.158 0.00 0.00 0.00 4.02
247 248 3.775654 GGGAGCTGTCGGGGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
248 249 3.775654 GGAGCTGTCGGGGTGAGG 61.776 72.222 0.00 0.00 0.00 3.86
249 250 3.775654 GAGCTGTCGGGGTGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
250 251 4.640690 AGCTGTCGGGGTGAGGGT 62.641 66.667 0.00 0.00 0.00 4.34
251 252 2.682494 GCTGTCGGGGTGAGGGTA 60.682 66.667 0.00 0.00 0.00 3.69
252 253 2.288025 GCTGTCGGGGTGAGGGTAA 61.288 63.158 0.00 0.00 0.00 2.85
253 254 1.833787 GCTGTCGGGGTGAGGGTAAA 61.834 60.000 0.00 0.00 0.00 2.01
254 255 0.688487 CTGTCGGGGTGAGGGTAAAA 59.312 55.000 0.00 0.00 0.00 1.52
255 256 1.280998 CTGTCGGGGTGAGGGTAAAAT 59.719 52.381 0.00 0.00 0.00 1.82
256 257 1.279846 TGTCGGGGTGAGGGTAAAATC 59.720 52.381 0.00 0.00 0.00 2.17
257 258 0.538118 TCGGGGTGAGGGTAAAATCG 59.462 55.000 0.00 0.00 0.00 3.34
258 259 0.538118 CGGGGTGAGGGTAAAATCGA 59.462 55.000 0.00 0.00 0.00 3.59
259 260 1.065998 CGGGGTGAGGGTAAAATCGAA 60.066 52.381 0.00 0.00 0.00 3.71
260 261 2.616001 CGGGGTGAGGGTAAAATCGAAA 60.616 50.000 0.00 0.00 0.00 3.46
261 262 3.423749 GGGGTGAGGGTAAAATCGAAAA 58.576 45.455 0.00 0.00 0.00 2.29
262 263 3.442625 GGGGTGAGGGTAAAATCGAAAAG 59.557 47.826 0.00 0.00 0.00 2.27
263 264 3.119602 GGGTGAGGGTAAAATCGAAAAGC 60.120 47.826 0.00 0.00 0.00 3.51
264 265 3.425758 GGTGAGGGTAAAATCGAAAAGCG 60.426 47.826 0.00 0.00 42.69 4.68
275 276 3.872560 TCGAAAAGCGAGAAAGTTTCC 57.127 42.857 12.05 3.36 45.59 3.13
276 277 3.463944 TCGAAAAGCGAGAAAGTTTCCT 58.536 40.909 12.05 0.00 45.59 3.36
277 278 3.875134 TCGAAAAGCGAGAAAGTTTCCTT 59.125 39.130 12.05 5.96 45.59 3.36
278 279 5.051816 TCGAAAAGCGAGAAAGTTTCCTTA 58.948 37.500 12.05 0.00 45.59 2.69
279 280 5.050567 TCGAAAAGCGAGAAAGTTTCCTTAC 60.051 40.000 12.05 6.21 45.59 2.34
280 281 4.727235 AAAGCGAGAAAGTTTCCTTACG 57.273 40.909 12.05 13.04 0.00 3.18
281 282 2.067013 AGCGAGAAAGTTTCCTTACGC 58.933 47.619 25.04 25.04 42.46 4.42
282 283 2.067013 GCGAGAAAGTTTCCTTACGCT 58.933 47.619 25.08 5.70 40.81 5.07
283 284 2.092368 GCGAGAAAGTTTCCTTACGCTC 59.908 50.000 25.08 11.74 40.81 5.03
284 285 2.341760 CGAGAAAGTTTCCTTACGCTCG 59.658 50.000 12.05 9.01 38.93 5.03
285 286 2.067013 AGAAAGTTTCCTTACGCTCGC 58.933 47.619 12.05 0.00 0.00 5.03
286 287 0.788391 AAAGTTTCCTTACGCTCGCG 59.212 50.000 10.06 10.06 46.03 5.87
287 288 0.038892 AAGTTTCCTTACGCTCGCGA 60.039 50.000 18.98 9.26 42.83 5.87
288 289 0.172803 AGTTTCCTTACGCTCGCGAT 59.827 50.000 18.98 0.00 42.83 4.58
289 290 0.997196 GTTTCCTTACGCTCGCGATT 59.003 50.000 18.98 0.00 42.83 3.34
290 291 1.392510 GTTTCCTTACGCTCGCGATTT 59.607 47.619 18.98 0.00 42.83 2.17
291 292 1.717194 TTCCTTACGCTCGCGATTTT 58.283 45.000 18.98 0.00 42.83 1.82
292 293 0.996462 TCCTTACGCTCGCGATTTTG 59.004 50.000 18.98 0.00 42.83 2.44
293 294 0.719465 CCTTACGCTCGCGATTTTGT 59.281 50.000 18.98 8.59 42.83 2.83
294 295 1.921887 CCTTACGCTCGCGATTTTGTA 59.078 47.619 18.98 7.52 42.83 2.41
295 296 2.284855 CCTTACGCTCGCGATTTTGTAC 60.285 50.000 18.98 0.00 42.83 2.90
296 297 1.979897 TACGCTCGCGATTTTGTACA 58.020 45.000 18.98 0.00 42.83 2.90
297 298 1.355971 ACGCTCGCGATTTTGTACAT 58.644 45.000 18.98 0.00 42.83 2.29
298 299 1.060553 ACGCTCGCGATTTTGTACATG 59.939 47.619 18.98 0.00 42.83 3.21
299 300 1.592110 CGCTCGCGATTTTGTACATGG 60.592 52.381 10.36 0.00 42.83 3.66
300 301 1.663643 GCTCGCGATTTTGTACATGGA 59.336 47.619 10.36 0.00 0.00 3.41
301 302 2.285834 GCTCGCGATTTTGTACATGGAG 60.286 50.000 10.36 0.00 0.00 3.86
302 303 3.186909 CTCGCGATTTTGTACATGGAGA 58.813 45.455 10.36 0.00 0.00 3.71
303 304 3.186909 TCGCGATTTTGTACATGGAGAG 58.813 45.455 3.71 0.00 0.00 3.20
304 305 2.285834 CGCGATTTTGTACATGGAGAGC 60.286 50.000 0.00 0.00 0.00 4.09
305 306 2.677836 GCGATTTTGTACATGGAGAGCA 59.322 45.455 0.00 0.00 0.00 4.26
306 307 3.126858 GCGATTTTGTACATGGAGAGCAA 59.873 43.478 0.00 0.00 0.00 3.91
307 308 4.379394 GCGATTTTGTACATGGAGAGCAAA 60.379 41.667 0.00 0.00 0.00 3.68
308 309 5.698832 CGATTTTGTACATGGAGAGCAAAA 58.301 37.500 7.23 7.23 41.31 2.44
309 310 5.569059 CGATTTTGTACATGGAGAGCAAAAC 59.431 40.000 6.99 2.64 40.36 2.43
310 311 4.481930 TTTGTACATGGAGAGCAAAACG 57.518 40.909 0.00 0.00 0.00 3.60
311 312 1.804151 TGTACATGGAGAGCAAAACGC 59.196 47.619 0.00 0.00 42.91 4.84
325 326 4.279659 GCAAAACGCTCTTATAATTCGGG 58.720 43.478 6.25 0.84 37.77 5.14
326 327 4.034742 GCAAAACGCTCTTATAATTCGGGA 59.965 41.667 6.25 0.00 37.77 5.14
327 328 5.499047 CAAAACGCTCTTATAATTCGGGAC 58.501 41.667 6.25 0.00 0.00 4.46
410 411 5.825593 ACAGTGAGAAAGATTGTCCCTAA 57.174 39.130 0.00 0.00 0.00 2.69
417 418 9.886132 GTGAGAAAGATTGTCCCTAAGTAATTA 57.114 33.333 0.00 0.00 0.00 1.40
478 480 9.646427 AAGAAGAGACATCACTAACATACTTTC 57.354 33.333 0.00 0.00 0.00 2.62
493 495 6.460781 ACATACTTTCCGTACTTGAATCACA 58.539 36.000 0.00 0.00 0.00 3.58
498 500 5.856126 TTCCGTACTTGAATCACATGTTC 57.144 39.130 0.00 0.00 37.85 3.18
597 599 6.636454 ACAAGATCCCTTTACTTCCATACA 57.364 37.500 0.00 0.00 0.00 2.29
601 603 6.415573 AGATCCCTTTACTTCCATACACAAC 58.584 40.000 0.00 0.00 0.00 3.32
603 605 5.556915 TCCCTTTACTTCCATACACAACAG 58.443 41.667 0.00 0.00 0.00 3.16
623 625 3.435671 CAGCCCCTTTACTCGTGTTTAAG 59.564 47.826 0.00 0.79 0.00 1.85
627 629 4.153655 CCCCTTTACTCGTGTTTAAGCTTC 59.846 45.833 0.00 0.00 0.00 3.86
629 631 6.161381 CCCTTTACTCGTGTTTAAGCTTCTA 58.839 40.000 0.00 0.00 0.00 2.10
630 632 6.647895 CCCTTTACTCGTGTTTAAGCTTCTAA 59.352 38.462 0.00 0.00 0.00 2.10
632 634 7.384387 CCTTTACTCGTGTTTAAGCTTCTAACT 59.616 37.037 19.28 6.95 0.00 2.24
633 635 8.652810 TTTACTCGTGTTTAAGCTTCTAACTT 57.347 30.769 19.28 6.90 0.00 2.66
640 644 6.357240 GTGTTTAAGCTTCTAACTTTCGCAAG 59.643 38.462 19.28 0.00 35.92 4.01
644 648 2.031157 GCTTCTAACTTTCGCAAGCCAA 60.031 45.455 0.00 0.00 34.59 4.52
650 654 7.618502 TCTAACTTTCGCAAGCCAATATAAA 57.381 32.000 0.00 0.00 32.57 1.40
659 663 7.935520 TCGCAAGCCAATATAAACAAATCATA 58.064 30.769 0.00 0.00 37.18 2.15
686 704 7.469260 ACGTATTTAATAGTTTCCACACATGC 58.531 34.615 0.00 0.00 0.00 4.06
688 706 4.955925 TTAATAGTTTCCACACATGCGG 57.044 40.909 0.00 0.00 0.00 5.69
690 708 0.398696 TAGTTTCCACACATGCGGGT 59.601 50.000 0.00 0.00 0.00 5.28
713 731 4.395854 TGGCACAACTCATATCAATCACAC 59.604 41.667 0.00 0.00 31.92 3.82
721 739 7.083062 ACTCATATCAATCACACCATACCAT 57.917 36.000 0.00 0.00 0.00 3.55
730 748 8.055790 TCAATCACACCATACCATAATTAACCA 58.944 33.333 0.00 0.00 0.00 3.67
734 752 8.549731 TCACACCATACCATAATTAACCAGTAA 58.450 33.333 0.00 0.00 0.00 2.24
769 788 3.069586 CAGTCAAACTACACTCCACCTGA 59.930 47.826 0.00 0.00 0.00 3.86
829 848 1.370900 GAGCACAACAAAGCAGCGG 60.371 57.895 0.00 0.00 0.00 5.52
840 859 2.740826 GCAGCGGCGGTTTAGTCA 60.741 61.111 9.73 0.00 0.00 3.41
913 933 1.081175 GCCTCAAGTGCTTTTCCGC 60.081 57.895 0.00 0.00 0.00 5.54
1529 1565 0.674895 ATTGCTGACCAGGCGAGTTC 60.675 55.000 0.00 0.00 0.00 3.01
1530 1566 1.758440 TTGCTGACCAGGCGAGTTCT 61.758 55.000 0.00 0.00 0.00 3.01
1540 1576 1.627550 GGCGAGTTCTTTCGACCTGC 61.628 60.000 0.00 0.00 42.76 4.85
1636 1675 1.614903 CAATGTTTGCTGCTCAGGGAA 59.385 47.619 0.00 0.00 0.00 3.97
1649 1688 0.919710 CAGGGAAGGGAAAGTAGGGG 59.080 60.000 0.00 0.00 0.00 4.79
1821 1863 2.821378 TGTGTGGAATCCAAATGAGCTG 59.179 45.455 2.31 0.00 34.18 4.24
1894 1936 0.699399 TTGGAATGGGGGCGTCTTTA 59.301 50.000 0.00 0.00 0.00 1.85
1895 1937 0.923358 TGGAATGGGGGCGTCTTTAT 59.077 50.000 0.00 0.00 0.00 1.40
1896 1938 1.286553 TGGAATGGGGGCGTCTTTATT 59.713 47.619 0.00 0.00 0.00 1.40
1897 1939 1.954382 GGAATGGGGGCGTCTTTATTC 59.046 52.381 0.00 0.00 0.00 1.75
1898 1940 2.422945 GGAATGGGGGCGTCTTTATTCT 60.423 50.000 9.33 0.00 0.00 2.40
1899 1941 3.288092 GAATGGGGGCGTCTTTATTCTT 58.712 45.455 0.00 0.00 0.00 2.52
1907 1949 5.163784 GGGGCGTCTTTATTCTTTAACTGTC 60.164 44.000 0.00 0.00 0.00 3.51
1940 1982 6.367374 TTGGTCTATGGAATGTAGAACACA 57.633 37.500 0.68 0.00 43.52 3.72
1944 1986 5.521735 GTCTATGGAATGTAGAACACAGCAG 59.478 44.000 0.00 0.00 41.51 4.24
1945 1987 3.769739 TGGAATGTAGAACACAGCAGT 57.230 42.857 0.00 0.00 41.51 4.40
2059 2101 5.808366 AGCTCTCGATAATGGTCCAATAA 57.192 39.130 0.00 0.00 0.00 1.40
2184 2226 4.392138 GCTATTAGAAGTTGCTCCGTGTTT 59.608 41.667 0.00 0.00 0.00 2.83
2277 2319 0.385029 TGTTGTCCAGTGCATGTTGC 59.615 50.000 0.00 0.00 45.29 4.17
2376 2418 5.047872 GGGTATGAATGTTTTAAACCCGTGT 60.048 40.000 5.32 0.00 36.06 4.49
2398 2440 7.532884 CGTGTTGTTGCTACTTAATTAAGGTTC 59.467 37.037 25.25 14.95 37.62 3.62
2632 2675 7.796054 ACTAATAATGTGGCTAGTCAGAATGT 58.204 34.615 0.00 0.00 37.40 2.71
2714 2757 3.643792 TGTTTTCCATGTTAACCCTTGGG 59.356 43.478 15.42 3.77 32.08 4.12
2737 2780 6.319405 GGGTTTTTCGGATAATGGCTAAACTA 59.681 38.462 0.00 0.00 0.00 2.24
2740 2783 9.101655 GTTTTTCGGATAATGGCTAAACTACTA 57.898 33.333 0.00 0.00 0.00 1.82
2974 3018 1.469251 CGCAGGTAGTCGCATACTTGT 60.469 52.381 9.55 0.00 39.80 3.16
3387 3434 2.476686 CGACAACATATTGCTGCTGTGG 60.477 50.000 0.00 0.00 39.66 4.17
3626 3673 2.432146 TGCCATCTCAGCCTAGTACTTG 59.568 50.000 0.00 0.00 0.00 3.16
3627 3674 2.432510 GCCATCTCAGCCTAGTACTTGT 59.567 50.000 0.00 0.00 0.00 3.16
3628 3675 3.118592 GCCATCTCAGCCTAGTACTTGTT 60.119 47.826 0.00 0.00 0.00 2.83
3629 3676 4.437239 CCATCTCAGCCTAGTACTTGTTG 58.563 47.826 0.00 1.55 0.00 3.33
3630 3677 4.081420 CCATCTCAGCCTAGTACTTGTTGT 60.081 45.833 0.00 0.00 0.00 3.32
3631 3678 4.521130 TCTCAGCCTAGTACTTGTTGTG 57.479 45.455 0.00 2.99 0.00 3.33
3632 3679 3.258372 TCTCAGCCTAGTACTTGTTGTGG 59.742 47.826 0.00 0.00 0.00 4.17
3633 3680 2.301870 TCAGCCTAGTACTTGTTGTGGG 59.698 50.000 0.00 0.00 0.00 4.61
3634 3681 2.301870 CAGCCTAGTACTTGTTGTGGGA 59.698 50.000 0.00 0.00 0.00 4.37
3635 3682 2.976882 AGCCTAGTACTTGTTGTGGGAA 59.023 45.455 0.00 0.00 0.00 3.97
3636 3683 3.393278 AGCCTAGTACTTGTTGTGGGAAA 59.607 43.478 0.00 0.00 0.00 3.13
3637 3684 3.751698 GCCTAGTACTTGTTGTGGGAAAG 59.248 47.826 0.00 0.00 0.00 2.62
3638 3685 4.504340 GCCTAGTACTTGTTGTGGGAAAGA 60.504 45.833 0.00 0.00 0.00 2.52
3639 3686 5.238583 CCTAGTACTTGTTGTGGGAAAGAG 58.761 45.833 0.00 0.00 0.00 2.85
3640 3687 3.477530 AGTACTTGTTGTGGGAAAGAGC 58.522 45.455 0.00 0.00 0.00 4.09
3641 3688 1.308998 ACTTGTTGTGGGAAAGAGCG 58.691 50.000 0.00 0.00 0.00 5.03
3642 3689 0.593128 CTTGTTGTGGGAAAGAGCGG 59.407 55.000 0.00 0.00 0.00 5.52
3643 3690 0.821711 TTGTTGTGGGAAAGAGCGGG 60.822 55.000 0.00 0.00 0.00 6.13
3644 3691 1.072505 GTTGTGGGAAAGAGCGGGA 59.927 57.895 0.00 0.00 0.00 5.14
3645 3692 0.322546 GTTGTGGGAAAGAGCGGGAT 60.323 55.000 0.00 0.00 0.00 3.85
3646 3693 0.404040 TTGTGGGAAAGAGCGGGATT 59.596 50.000 0.00 0.00 0.00 3.01
3647 3694 0.404040 TGTGGGAAAGAGCGGGATTT 59.596 50.000 0.00 0.00 0.00 2.17
3648 3695 0.811281 GTGGGAAAGAGCGGGATTTG 59.189 55.000 0.00 0.00 0.00 2.32
3649 3696 0.404040 TGGGAAAGAGCGGGATTTGT 59.596 50.000 0.00 0.00 0.00 2.83
3650 3697 1.095600 GGGAAAGAGCGGGATTTGTC 58.904 55.000 0.00 0.00 0.00 3.18
3651 3698 1.340114 GGGAAAGAGCGGGATTTGTCT 60.340 52.381 0.00 0.00 0.00 3.41
3652 3699 2.010497 GGAAAGAGCGGGATTTGTCTC 58.990 52.381 0.00 0.00 0.00 3.36
3653 3700 2.615493 GGAAAGAGCGGGATTTGTCTCA 60.615 50.000 0.00 0.00 0.00 3.27
3654 3701 3.274288 GAAAGAGCGGGATTTGTCTCAT 58.726 45.455 0.00 0.00 0.00 2.90
3655 3702 2.322355 AGAGCGGGATTTGTCTCATG 57.678 50.000 0.00 0.00 0.00 3.07
3656 3703 1.134280 AGAGCGGGATTTGTCTCATGG 60.134 52.381 0.00 0.00 0.00 3.66
3657 3704 0.107017 AGCGGGATTTGTCTCATGGG 60.107 55.000 0.00 0.00 0.00 4.00
3658 3705 0.394352 GCGGGATTTGTCTCATGGGT 60.394 55.000 0.00 0.00 0.00 4.51
3659 3706 1.134220 GCGGGATTTGTCTCATGGGTA 60.134 52.381 0.00 0.00 0.00 3.69
3660 3707 2.682563 GCGGGATTTGTCTCATGGGTAA 60.683 50.000 0.00 0.00 0.00 2.85
3661 3708 3.820557 CGGGATTTGTCTCATGGGTAAT 58.179 45.455 0.00 0.00 0.00 1.89
3662 3709 3.815401 CGGGATTTGTCTCATGGGTAATC 59.185 47.826 0.00 1.25 0.00 1.75
3663 3710 4.685848 CGGGATTTGTCTCATGGGTAATCA 60.686 45.833 14.96 1.22 0.00 2.57
3664 3711 4.823989 GGGATTTGTCTCATGGGTAATCAG 59.176 45.833 14.96 0.00 0.00 2.90
3665 3712 5.397899 GGGATTTGTCTCATGGGTAATCAGA 60.398 44.000 14.96 0.00 0.00 3.27
3666 3713 6.122277 GGATTTGTCTCATGGGTAATCAGAA 58.878 40.000 14.96 0.00 0.00 3.02
3667 3714 6.774656 GGATTTGTCTCATGGGTAATCAGAAT 59.225 38.462 14.96 0.87 0.00 2.40
3668 3715 7.255381 GGATTTGTCTCATGGGTAATCAGAATG 60.255 40.741 14.96 0.00 37.54 2.67
3669 3716 5.698741 TGTCTCATGGGTAATCAGAATGT 57.301 39.130 0.00 0.00 37.40 2.71
3670 3717 5.430886 TGTCTCATGGGTAATCAGAATGTG 58.569 41.667 0.00 0.00 37.40 3.21
3671 3718 4.274459 GTCTCATGGGTAATCAGAATGTGC 59.726 45.833 0.00 0.00 37.40 4.57
3672 3719 3.205338 TCATGGGTAATCAGAATGTGCG 58.795 45.455 0.00 0.00 37.40 5.34
3673 3720 2.779755 TGGGTAATCAGAATGTGCGT 57.220 45.000 0.00 0.00 37.40 5.24
3674 3721 2.355197 TGGGTAATCAGAATGTGCGTG 58.645 47.619 0.00 0.00 37.40 5.34
3675 3722 2.027653 TGGGTAATCAGAATGTGCGTGA 60.028 45.455 0.00 0.00 37.40 4.35
3676 3723 3.006940 GGGTAATCAGAATGTGCGTGAA 58.993 45.455 0.00 0.00 37.40 3.18
3677 3724 3.438781 GGGTAATCAGAATGTGCGTGAAA 59.561 43.478 0.00 0.00 37.40 2.69
3678 3725 4.083003 GGGTAATCAGAATGTGCGTGAAAA 60.083 41.667 0.00 0.00 37.40 2.29
3679 3726 5.457140 GGTAATCAGAATGTGCGTGAAAAA 58.543 37.500 0.00 0.00 37.40 1.94
3680 3727 6.092748 GGTAATCAGAATGTGCGTGAAAAAT 58.907 36.000 0.00 0.00 37.40 1.82
3681 3728 6.033831 GGTAATCAGAATGTGCGTGAAAAATG 59.966 38.462 0.00 0.00 37.40 2.32
3682 3729 4.827304 TCAGAATGTGCGTGAAAAATGA 57.173 36.364 0.00 0.00 37.40 2.57
3683 3730 5.375417 TCAGAATGTGCGTGAAAAATGAT 57.625 34.783 0.00 0.00 37.40 2.45
3684 3731 5.771469 TCAGAATGTGCGTGAAAAATGATT 58.229 33.333 0.00 0.00 37.40 2.57
3685 3732 5.630264 TCAGAATGTGCGTGAAAAATGATTG 59.370 36.000 0.00 0.00 37.40 2.67
3686 3733 4.386652 AGAATGTGCGTGAAAAATGATTGC 59.613 37.500 0.00 0.00 0.00 3.56
3687 3734 2.402305 TGTGCGTGAAAAATGATTGCC 58.598 42.857 0.00 0.00 0.00 4.52
3688 3735 2.223900 TGTGCGTGAAAAATGATTGCCA 60.224 40.909 0.00 0.00 0.00 4.92
3689 3736 2.995258 GTGCGTGAAAAATGATTGCCAT 59.005 40.909 0.00 0.00 36.99 4.40
3690 3737 3.061161 GTGCGTGAAAAATGATTGCCATC 59.939 43.478 0.00 0.00 33.53 3.51
3691 3738 3.056678 TGCGTGAAAAATGATTGCCATCT 60.057 39.130 0.00 0.00 33.53 2.90
3692 3739 3.549070 GCGTGAAAAATGATTGCCATCTC 59.451 43.478 0.00 0.00 33.53 2.75
3693 3740 4.735985 CGTGAAAAATGATTGCCATCTCA 58.264 39.130 0.00 0.00 33.53 3.27
3694 3741 4.796830 CGTGAAAAATGATTGCCATCTCAG 59.203 41.667 0.00 0.00 33.53 3.35
3695 3742 4.565564 GTGAAAAATGATTGCCATCTCAGC 59.434 41.667 0.00 0.00 33.53 4.26
3696 3743 3.814005 AAAATGATTGCCATCTCAGCC 57.186 42.857 0.00 0.00 33.53 4.85
3697 3744 2.750141 AATGATTGCCATCTCAGCCT 57.250 45.000 0.00 0.00 33.53 4.58
3698 3745 3.870538 AATGATTGCCATCTCAGCCTA 57.129 42.857 0.00 0.00 33.53 3.93
3699 3746 2.924757 TGATTGCCATCTCAGCCTAG 57.075 50.000 0.00 0.00 0.00 3.02
3700 3747 2.121948 TGATTGCCATCTCAGCCTAGT 58.878 47.619 0.00 0.00 0.00 2.57
3701 3748 3.308401 TGATTGCCATCTCAGCCTAGTA 58.692 45.455 0.00 0.00 0.00 1.82
3702 3749 3.070159 TGATTGCCATCTCAGCCTAGTAC 59.930 47.826 0.00 0.00 0.00 2.73
3703 3750 2.461300 TGCCATCTCAGCCTAGTACT 57.539 50.000 0.00 0.00 0.00 2.73
3704 3751 2.752030 TGCCATCTCAGCCTAGTACTT 58.248 47.619 0.00 0.00 0.00 2.24
3705 3752 2.432146 TGCCATCTCAGCCTAGTACTTG 59.568 50.000 0.00 0.00 0.00 3.16
3717 3764 4.504340 GCCTAGTACTTGTTGTGGGAAAGA 60.504 45.833 0.00 0.00 0.00 2.52
3735 3782 2.846193 AGACGTAAATTGGTGCACTGT 58.154 42.857 17.98 0.00 0.00 3.55
3752 3799 3.951037 CACTGTCATCTCAGCCTAGTACT 59.049 47.826 0.00 0.00 38.84 2.73
3800 3856 3.181451 TGCACAAGGAGACAACTCAGAAT 60.181 43.478 0.00 0.00 44.22 2.40
3803 3859 5.541845 CACAAGGAGACAACTCAGAATACA 58.458 41.667 0.00 0.00 44.22 2.29
3812 3868 9.332502 GAGACAACTCAGAATACAGACTAGATA 57.667 37.037 0.00 0.00 42.21 1.98
3850 3906 5.016173 TGCTCTTATGGCCAGTTTTGTTAT 58.984 37.500 13.05 0.00 0.00 1.89
3867 3923 7.523293 TTTGTTATTGCTTCATCTCCAAAGA 57.477 32.000 0.00 0.00 35.54 2.52
3904 3960 3.727258 TTGGTCATGCCCTCCCGG 61.727 66.667 0.00 0.00 36.04 5.73
3960 4021 2.218603 CCATGATTTGCGTAGGGGTAC 58.781 52.381 0.00 0.00 0.00 3.34
4104 4165 1.268032 GCAAAGGACGGTATGCAATCG 60.268 52.381 0.00 0.00 38.63 3.34
4105 4166 2.006888 CAAAGGACGGTATGCAATCGT 58.993 47.619 11.18 11.18 39.99 3.73
4106 4167 3.191669 CAAAGGACGGTATGCAATCGTA 58.808 45.455 11.30 0.00 37.25 3.43
4107 4168 3.746045 AAGGACGGTATGCAATCGTAT 57.254 42.857 11.30 2.87 37.25 3.06
4130 4193 9.754382 GTATTATTATTAACTCGGTCAACCTGA 57.246 33.333 0.00 0.00 0.00 3.86
4134 4197 1.420430 AACTCGGTCAACCTGAAGGA 58.580 50.000 2.62 0.00 38.94 3.36
4139 4202 3.437213 TCGGTCAACCTGAAGGAGATTA 58.563 45.455 2.62 0.00 38.94 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.969238 GGTGGATCTGCATCGGCG 60.969 66.667 0.00 0.00 45.35 6.46
4 5 1.890979 CAGGTGGATCTGCATCGGC 60.891 63.158 0.00 0.00 41.68 5.54
5 6 0.249784 CTCAGGTGGATCTGCATCGG 60.250 60.000 0.00 0.00 34.91 4.18
6 7 0.463204 ACTCAGGTGGATCTGCATCG 59.537 55.000 0.00 0.00 34.91 3.84
7 8 3.827008 TTACTCAGGTGGATCTGCATC 57.173 47.619 0.00 0.00 34.91 3.91
8 9 4.574674 TTTTACTCAGGTGGATCTGCAT 57.425 40.909 0.00 0.00 34.91 3.96
9 10 4.326826 CTTTTTACTCAGGTGGATCTGCA 58.673 43.478 0.00 0.00 34.91 4.41
10 11 3.691609 CCTTTTTACTCAGGTGGATCTGC 59.308 47.826 0.00 0.00 34.91 4.26
11 12 4.911390 ACCTTTTTACTCAGGTGGATCTG 58.089 43.478 0.00 0.00 42.20 2.90
18 19 6.486993 GTCAAAGATCACCTTTTTACTCAGGT 59.513 38.462 0.00 0.00 44.88 4.00
19 20 6.486657 TGTCAAAGATCACCTTTTTACTCAGG 59.513 38.462 0.00 0.00 42.13 3.86
20 21 7.355778 GTGTCAAAGATCACCTTTTTACTCAG 58.644 38.462 0.00 0.00 42.13 3.35
21 22 6.018262 CGTGTCAAAGATCACCTTTTTACTCA 60.018 38.462 0.00 0.00 42.13 3.41
22 23 6.363473 CGTGTCAAAGATCACCTTTTTACTC 58.637 40.000 0.00 0.00 42.13 2.59
23 24 5.238650 CCGTGTCAAAGATCACCTTTTTACT 59.761 40.000 0.00 0.00 42.13 2.24
24 25 5.449304 CCGTGTCAAAGATCACCTTTTTAC 58.551 41.667 0.00 0.00 42.13 2.01
25 26 4.023536 GCCGTGTCAAAGATCACCTTTTTA 60.024 41.667 0.00 0.00 42.13 1.52
26 27 3.243401 GCCGTGTCAAAGATCACCTTTTT 60.243 43.478 0.00 0.00 42.13 1.94
27 28 2.293399 GCCGTGTCAAAGATCACCTTTT 59.707 45.455 0.00 0.00 42.13 2.27
28 29 1.880027 GCCGTGTCAAAGATCACCTTT 59.120 47.619 0.00 0.00 45.48 3.11
29 30 1.523758 GCCGTGTCAAAGATCACCTT 58.476 50.000 0.00 0.00 36.47 3.50
30 31 0.670546 CGCCGTGTCAAAGATCACCT 60.671 55.000 0.00 0.00 0.00 4.00
31 32 0.669318 TCGCCGTGTCAAAGATCACC 60.669 55.000 0.00 0.00 0.00 4.02
32 33 0.438830 GTCGCCGTGTCAAAGATCAC 59.561 55.000 0.00 0.00 0.00 3.06
33 34 0.032815 TGTCGCCGTGTCAAAGATCA 59.967 50.000 0.00 0.00 0.00 2.92
34 35 0.438830 GTGTCGCCGTGTCAAAGATC 59.561 55.000 0.00 0.00 0.00 2.75
35 36 0.949105 GGTGTCGCCGTGTCAAAGAT 60.949 55.000 0.00 0.00 0.00 2.40
36 37 1.593209 GGTGTCGCCGTGTCAAAGA 60.593 57.895 0.00 0.00 0.00 2.52
37 38 1.227999 ATGGTGTCGCCGTGTCAAAG 61.228 55.000 0.00 0.00 41.21 2.77
38 39 1.225376 GATGGTGTCGCCGTGTCAAA 61.225 55.000 0.66 0.00 41.21 2.69
39 40 1.666553 GATGGTGTCGCCGTGTCAA 60.667 57.895 0.66 0.00 41.21 3.18
40 41 2.048597 GATGGTGTCGCCGTGTCA 60.049 61.111 0.66 0.00 41.21 3.58
41 42 0.949105 AAAGATGGTGTCGCCGTGTC 60.949 55.000 0.66 0.00 41.21 3.67
42 43 1.070786 AAAGATGGTGTCGCCGTGT 59.929 52.632 0.66 0.00 41.21 4.49
43 44 1.497278 CAAAGATGGTGTCGCCGTG 59.503 57.895 0.66 0.00 41.21 4.94
44 45 1.671054 CCAAAGATGGTGTCGCCGT 60.671 57.895 0.00 0.00 42.18 5.68
45 46 3.177600 CCAAAGATGGTGTCGCCG 58.822 61.111 0.00 0.00 42.18 6.46
54 55 0.257039 CCCACTCCCCTCCAAAGATG 59.743 60.000 0.00 0.00 0.00 2.90
55 56 0.178831 ACCCACTCCCCTCCAAAGAT 60.179 55.000 0.00 0.00 0.00 2.40
56 57 1.133809 CACCCACTCCCCTCCAAAGA 61.134 60.000 0.00 0.00 0.00 2.52
57 58 1.133809 TCACCCACTCCCCTCCAAAG 61.134 60.000 0.00 0.00 0.00 2.77
58 59 1.073319 TCACCCACTCCCCTCCAAA 60.073 57.895 0.00 0.00 0.00 3.28
59 60 1.538876 CTCACCCACTCCCCTCCAA 60.539 63.158 0.00 0.00 0.00 3.53
60 61 2.122729 CTCACCCACTCCCCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
61 62 3.403558 GCTCACCCACTCCCCTCC 61.404 72.222 0.00 0.00 0.00 4.30
62 63 3.775654 CGCTCACCCACTCCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
63 64 4.316823 TCGCTCACCCACTCCCCT 62.317 66.667 0.00 0.00 0.00 4.79
64 65 3.775654 CTCGCTCACCCACTCCCC 61.776 72.222 0.00 0.00 0.00 4.81
65 66 3.775654 CCTCGCTCACCCACTCCC 61.776 72.222 0.00 0.00 0.00 4.30
66 67 3.775654 CCCTCGCTCACCCACTCC 61.776 72.222 0.00 0.00 0.00 3.85
67 68 3.775654 CCCCTCGCTCACCCACTC 61.776 72.222 0.00 0.00 0.00 3.51
68 69 3.846405 TTCCCCTCGCTCACCCACT 62.846 63.158 0.00 0.00 0.00 4.00
69 70 2.670148 ATTCCCCTCGCTCACCCAC 61.670 63.158 0.00 0.00 0.00 4.61
70 71 2.285368 ATTCCCCTCGCTCACCCA 60.285 61.111 0.00 0.00 0.00 4.51
71 72 2.190578 CATTCCCCTCGCTCACCC 59.809 66.667 0.00 0.00 0.00 4.61
72 73 2.190578 CCATTCCCCTCGCTCACC 59.809 66.667 0.00 0.00 0.00 4.02
73 74 1.700042 ATCCCATTCCCCTCGCTCAC 61.700 60.000 0.00 0.00 0.00 3.51
74 75 0.105194 TATCCCATTCCCCTCGCTCA 60.105 55.000 0.00 0.00 0.00 4.26
75 76 0.610687 CTATCCCATTCCCCTCGCTC 59.389 60.000 0.00 0.00 0.00 5.03
76 77 0.838122 CCTATCCCATTCCCCTCGCT 60.838 60.000 0.00 0.00 0.00 4.93
77 78 0.836400 TCCTATCCCATTCCCCTCGC 60.836 60.000 0.00 0.00 0.00 5.03
78 79 1.203187 TCTCCTATCCCATTCCCCTCG 60.203 57.143 0.00 0.00 0.00 4.63
79 80 2.261729 GTCTCCTATCCCATTCCCCTC 58.738 57.143 0.00 0.00 0.00 4.30
80 81 1.483307 CGTCTCCTATCCCATTCCCCT 60.483 57.143 0.00 0.00 0.00 4.79
81 82 0.977395 CGTCTCCTATCCCATTCCCC 59.023 60.000 0.00 0.00 0.00 4.81
82 83 0.321996 GCGTCTCCTATCCCATTCCC 59.678 60.000 0.00 0.00 0.00 3.97
83 84 1.001406 CAGCGTCTCCTATCCCATTCC 59.999 57.143 0.00 0.00 0.00 3.01
84 85 1.964223 TCAGCGTCTCCTATCCCATTC 59.036 52.381 0.00 0.00 0.00 2.67
85 86 1.689273 GTCAGCGTCTCCTATCCCATT 59.311 52.381 0.00 0.00 0.00 3.16
86 87 1.333177 GTCAGCGTCTCCTATCCCAT 58.667 55.000 0.00 0.00 0.00 4.00
87 88 1.101635 CGTCAGCGTCTCCTATCCCA 61.102 60.000 0.00 0.00 0.00 4.37
88 89 0.818445 TCGTCAGCGTCTCCTATCCC 60.818 60.000 0.00 0.00 39.49 3.85
89 90 0.589223 CTCGTCAGCGTCTCCTATCC 59.411 60.000 0.00 0.00 39.49 2.59
90 91 1.529438 CTCTCGTCAGCGTCTCCTATC 59.471 57.143 0.00 0.00 39.49 2.08
91 92 1.588674 CTCTCGTCAGCGTCTCCTAT 58.411 55.000 0.00 0.00 39.49 2.57
92 93 0.462225 CCTCTCGTCAGCGTCTCCTA 60.462 60.000 0.00 0.00 39.49 2.94
93 94 1.747367 CCTCTCGTCAGCGTCTCCT 60.747 63.158 0.00 0.00 39.49 3.69
94 95 2.766400 CCCTCTCGTCAGCGTCTCC 61.766 68.421 0.00 0.00 39.49 3.71
95 96 1.711060 CTCCCTCTCGTCAGCGTCTC 61.711 65.000 0.00 0.00 39.49 3.36
96 97 1.747367 CTCCCTCTCGTCAGCGTCT 60.747 63.158 0.00 0.00 39.49 4.18
97 98 2.766400 CCTCCCTCTCGTCAGCGTC 61.766 68.421 0.00 0.00 39.49 5.19
98 99 2.752238 CCTCCCTCTCGTCAGCGT 60.752 66.667 0.00 0.00 39.49 5.07
99 100 4.200283 GCCTCCCTCTCGTCAGCG 62.200 72.222 0.00 0.00 39.92 5.18
100 101 4.200283 CGCCTCCCTCTCGTCAGC 62.200 72.222 0.00 0.00 0.00 4.26
101 102 3.522731 CCGCCTCCCTCTCGTCAG 61.523 72.222 0.00 0.00 0.00 3.51
119 120 4.517703 CTCTCGTCGGCGTCGTCC 62.518 72.222 24.03 0.00 39.49 4.79
120 121 4.517703 CCTCTCGTCGGCGTCGTC 62.518 72.222 24.03 1.92 39.49 4.20
149 150 4.208686 ATTCCTCTCGCCGGCGTC 62.209 66.667 44.16 8.29 40.74 5.19
150 151 4.514577 CATTCCTCTCGCCGGCGT 62.515 66.667 44.16 24.13 40.74 5.68
152 153 4.918201 CCCATTCCTCTCGCCGGC 62.918 72.222 19.07 19.07 0.00 6.13
153 154 3.470888 ACCCATTCCTCTCGCCGG 61.471 66.667 0.00 0.00 0.00 6.13
154 155 2.202932 CACCCATTCCTCTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
155 156 1.144936 CTCACCCATTCCTCTCGCC 59.855 63.158 0.00 0.00 0.00 5.54
156 157 0.250513 AACTCACCCATTCCTCTCGC 59.749 55.000 0.00 0.00 0.00 5.03
157 158 1.276421 ACAACTCACCCATTCCTCTCG 59.724 52.381 0.00 0.00 0.00 4.04
158 159 3.769844 TCTACAACTCACCCATTCCTCTC 59.230 47.826 0.00 0.00 0.00 3.20
159 160 3.772025 CTCTACAACTCACCCATTCCTCT 59.228 47.826 0.00 0.00 0.00 3.69
160 161 3.769844 TCTCTACAACTCACCCATTCCTC 59.230 47.826 0.00 0.00 0.00 3.71
161 162 3.772025 CTCTCTACAACTCACCCATTCCT 59.228 47.826 0.00 0.00 0.00 3.36
162 163 3.118592 CCTCTCTACAACTCACCCATTCC 60.119 52.174 0.00 0.00 0.00 3.01
163 164 3.680196 GCCTCTCTACAACTCACCCATTC 60.680 52.174 0.00 0.00 0.00 2.67
164 165 2.237392 GCCTCTCTACAACTCACCCATT 59.763 50.000 0.00 0.00 0.00 3.16
165 166 1.834263 GCCTCTCTACAACTCACCCAT 59.166 52.381 0.00 0.00 0.00 4.00
166 167 1.203187 AGCCTCTCTACAACTCACCCA 60.203 52.381 0.00 0.00 0.00 4.51
167 168 1.205893 CAGCCTCTCTACAACTCACCC 59.794 57.143 0.00 0.00 0.00 4.61
168 169 1.205893 CCAGCCTCTCTACAACTCACC 59.794 57.143 0.00 0.00 0.00 4.02
169 170 1.404851 GCCAGCCTCTCTACAACTCAC 60.405 57.143 0.00 0.00 0.00 3.51
170 171 0.898320 GCCAGCCTCTCTACAACTCA 59.102 55.000 0.00 0.00 0.00 3.41
171 172 0.179124 CGCCAGCCTCTCTACAACTC 60.179 60.000 0.00 0.00 0.00 3.01
172 173 0.612174 TCGCCAGCCTCTCTACAACT 60.612 55.000 0.00 0.00 0.00 3.16
173 174 0.179124 CTCGCCAGCCTCTCTACAAC 60.179 60.000 0.00 0.00 0.00 3.32
174 175 1.323271 CCTCGCCAGCCTCTCTACAA 61.323 60.000 0.00 0.00 0.00 2.41
175 176 1.754621 CCTCGCCAGCCTCTCTACA 60.755 63.158 0.00 0.00 0.00 2.74
176 177 2.494530 CCCTCGCCAGCCTCTCTAC 61.495 68.421 0.00 0.00 0.00 2.59
177 178 2.123683 CCCTCGCCAGCCTCTCTA 60.124 66.667 0.00 0.00 0.00 2.43
178 179 3.608759 TTCCCTCGCCAGCCTCTCT 62.609 63.158 0.00 0.00 0.00 3.10
179 180 2.185310 TTTTCCCTCGCCAGCCTCTC 62.185 60.000 0.00 0.00 0.00 3.20
180 181 2.190488 CTTTTCCCTCGCCAGCCTCT 62.190 60.000 0.00 0.00 0.00 3.69
181 182 1.746991 CTTTTCCCTCGCCAGCCTC 60.747 63.158 0.00 0.00 0.00 4.70
182 183 2.352805 CTTTTCCCTCGCCAGCCT 59.647 61.111 0.00 0.00 0.00 4.58
183 184 2.034221 ACTTTTCCCTCGCCAGCC 59.966 61.111 0.00 0.00 0.00 4.85
184 185 1.301677 CTCACTTTTCCCTCGCCAGC 61.302 60.000 0.00 0.00 0.00 4.85
185 186 1.301677 GCTCACTTTTCCCTCGCCAG 61.302 60.000 0.00 0.00 0.00 4.85
186 187 1.302511 GCTCACTTTTCCCTCGCCA 60.303 57.895 0.00 0.00 0.00 5.69
187 188 0.606673 AAGCTCACTTTTCCCTCGCC 60.607 55.000 0.00 0.00 29.41 5.54
188 189 1.732809 GTAAGCTCACTTTTCCCTCGC 59.267 52.381 0.00 0.00 37.33 5.03
189 190 2.996621 CTGTAAGCTCACTTTTCCCTCG 59.003 50.000 0.00 0.00 37.33 4.63
190 191 4.249661 CTCTGTAAGCTCACTTTTCCCTC 58.750 47.826 0.00 0.00 37.33 4.30
191 192 3.008485 CCTCTGTAAGCTCACTTTTCCCT 59.992 47.826 0.00 0.00 37.33 4.20
192 193 3.008049 TCCTCTGTAAGCTCACTTTTCCC 59.992 47.826 0.00 0.00 37.33 3.97
193 194 4.249661 CTCCTCTGTAAGCTCACTTTTCC 58.750 47.826 0.00 0.00 37.33 3.13
194 195 3.682377 GCTCCTCTGTAAGCTCACTTTTC 59.318 47.826 0.00 0.00 37.33 2.29
195 196 3.669536 GCTCCTCTGTAAGCTCACTTTT 58.330 45.455 0.00 0.00 37.33 2.27
196 197 2.353208 CGCTCCTCTGTAAGCTCACTTT 60.353 50.000 0.00 0.00 37.33 2.66
197 198 1.203523 CGCTCCTCTGTAAGCTCACTT 59.796 52.381 0.00 0.00 40.07 3.16
198 199 0.814457 CGCTCCTCTGTAAGCTCACT 59.186 55.000 0.00 0.00 36.35 3.41
199 200 0.179124 CCGCTCCTCTGTAAGCTCAC 60.179 60.000 0.00 0.00 36.35 3.51
200 201 1.323271 CCCGCTCCTCTGTAAGCTCA 61.323 60.000 0.00 0.00 36.35 4.26
201 202 1.439644 CCCGCTCCTCTGTAAGCTC 59.560 63.158 0.00 0.00 36.35 4.09
202 203 2.726351 GCCCGCTCCTCTGTAAGCT 61.726 63.158 0.00 0.00 36.35 3.74
203 204 2.202946 GCCCGCTCCTCTGTAAGC 60.203 66.667 0.00 0.00 35.13 3.09
204 205 2.105128 CGCCCGCTCCTCTGTAAG 59.895 66.667 0.00 0.00 0.00 2.34
205 206 2.361992 TCGCCCGCTCCTCTGTAA 60.362 61.111 0.00 0.00 0.00 2.41
206 207 2.829003 CTCGCCCGCTCCTCTGTA 60.829 66.667 0.00 0.00 0.00 2.74
213 214 4.918201 CATTCCCCTCGCCCGCTC 62.918 72.222 0.00 0.00 0.00 5.03
217 218 3.878667 CTCCCATTCCCCTCGCCC 61.879 72.222 0.00 0.00 0.00 6.13
218 219 4.570874 GCTCCCATTCCCCTCGCC 62.571 72.222 0.00 0.00 0.00 5.54
219 220 3.483869 AGCTCCCATTCCCCTCGC 61.484 66.667 0.00 0.00 0.00 5.03
220 221 2.317149 GACAGCTCCCATTCCCCTCG 62.317 65.000 0.00 0.00 0.00 4.63
221 222 1.529309 GACAGCTCCCATTCCCCTC 59.471 63.158 0.00 0.00 0.00 4.30
222 223 2.370445 CGACAGCTCCCATTCCCCT 61.370 63.158 0.00 0.00 0.00 4.79
223 224 2.190578 CGACAGCTCCCATTCCCC 59.809 66.667 0.00 0.00 0.00 4.81
224 225 2.190578 CCGACAGCTCCCATTCCC 59.809 66.667 0.00 0.00 0.00 3.97
225 226 2.190578 CCCGACAGCTCCCATTCC 59.809 66.667 0.00 0.00 0.00 3.01
226 227 2.190578 CCCCGACAGCTCCCATTC 59.809 66.667 0.00 0.00 0.00 2.67
227 228 2.610859 ACCCCGACAGCTCCCATT 60.611 61.111 0.00 0.00 0.00 3.16
228 229 3.402681 CACCCCGACAGCTCCCAT 61.403 66.667 0.00 0.00 0.00 4.00
229 230 4.631740 TCACCCCGACAGCTCCCA 62.632 66.667 0.00 0.00 0.00 4.37
230 231 3.775654 CTCACCCCGACAGCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
231 232 3.775654 CCTCACCCCGACAGCTCC 61.776 72.222 0.00 0.00 0.00 4.70
232 233 3.775654 CCCTCACCCCGACAGCTC 61.776 72.222 0.00 0.00 0.00 4.09
233 234 2.741878 TTACCCTCACCCCGACAGCT 62.742 60.000 0.00 0.00 0.00 4.24
234 235 1.833787 TTTACCCTCACCCCGACAGC 61.834 60.000 0.00 0.00 0.00 4.40
235 236 0.688487 TTTTACCCTCACCCCGACAG 59.312 55.000 0.00 0.00 0.00 3.51
236 237 1.279846 GATTTTACCCTCACCCCGACA 59.720 52.381 0.00 0.00 0.00 4.35
237 238 1.741394 CGATTTTACCCTCACCCCGAC 60.741 57.143 0.00 0.00 0.00 4.79
238 239 0.538118 CGATTTTACCCTCACCCCGA 59.462 55.000 0.00 0.00 0.00 5.14
239 240 0.538118 TCGATTTTACCCTCACCCCG 59.462 55.000 0.00 0.00 0.00 5.73
240 241 2.793288 TTCGATTTTACCCTCACCCC 57.207 50.000 0.00 0.00 0.00 4.95
241 242 3.119602 GCTTTTCGATTTTACCCTCACCC 60.120 47.826 0.00 0.00 0.00 4.61
242 243 3.425758 CGCTTTTCGATTTTACCCTCACC 60.426 47.826 0.00 0.00 41.67 4.02
243 244 3.434299 TCGCTTTTCGATTTTACCCTCAC 59.566 43.478 0.00 0.00 43.16 3.51
244 245 3.666274 TCGCTTTTCGATTTTACCCTCA 58.334 40.909 0.00 0.00 43.16 3.86
250 251 7.255001 AGGAAACTTTCTCGCTTTTCGATTTTA 60.255 33.333 1.57 0.00 42.59 1.52
251 252 6.459710 AGGAAACTTTCTCGCTTTTCGATTTT 60.460 34.615 1.57 0.00 42.59 1.82
252 253 5.008712 AGGAAACTTTCTCGCTTTTCGATTT 59.991 36.000 1.57 0.00 42.59 2.17
253 254 4.515567 AGGAAACTTTCTCGCTTTTCGATT 59.484 37.500 1.57 0.00 42.59 3.34
254 255 4.065789 AGGAAACTTTCTCGCTTTTCGAT 58.934 39.130 1.57 0.00 42.59 3.59
255 256 3.463944 AGGAAACTTTCTCGCTTTTCGA 58.536 40.909 1.57 0.00 41.53 3.71
256 257 3.879932 AGGAAACTTTCTCGCTTTTCG 57.120 42.857 1.57 0.00 37.44 3.46
265 266 5.699299 TCGCGAGCGTAAGGAAACTTTCT 62.699 47.826 17.24 0.00 44.00 2.52
266 267 3.485438 TCGCGAGCGTAAGGAAACTTTC 61.485 50.000 17.24 0.00 44.00 2.62
267 268 1.603678 TCGCGAGCGTAAGGAAACTTT 60.604 47.619 17.24 0.00 44.00 2.66
268 269 0.038892 TCGCGAGCGTAAGGAAACTT 60.039 50.000 17.24 0.00 45.58 2.66
269 270 0.172803 ATCGCGAGCGTAAGGAAACT 59.827 50.000 16.66 0.00 41.33 2.66
270 271 0.997196 AATCGCGAGCGTAAGGAAAC 59.003 50.000 16.66 0.00 40.74 2.78
271 272 1.717194 AAATCGCGAGCGTAAGGAAA 58.283 45.000 16.66 0.00 40.74 3.13
272 273 1.392168 CAAAATCGCGAGCGTAAGGAA 59.608 47.619 16.66 0.00 40.74 3.36
273 274 0.996462 CAAAATCGCGAGCGTAAGGA 59.004 50.000 16.66 0.00 40.74 3.36
274 275 0.719465 ACAAAATCGCGAGCGTAAGG 59.281 50.000 16.66 2.62 40.74 2.69
275 276 2.343246 TGTACAAAATCGCGAGCGTAAG 59.657 45.455 16.66 4.72 40.74 2.34
276 277 2.326664 TGTACAAAATCGCGAGCGTAA 58.673 42.857 16.66 0.00 40.74 3.18
277 278 1.979897 TGTACAAAATCGCGAGCGTA 58.020 45.000 16.66 10.09 40.74 4.42
278 279 1.060553 CATGTACAAAATCGCGAGCGT 59.939 47.619 16.66 11.13 40.74 5.07
279 280 1.592110 CCATGTACAAAATCGCGAGCG 60.592 52.381 16.66 11.64 41.35 5.03
280 281 1.663643 TCCATGTACAAAATCGCGAGC 59.336 47.619 16.66 0.00 0.00 5.03
281 282 3.186909 TCTCCATGTACAAAATCGCGAG 58.813 45.455 16.66 2.71 0.00 5.03
282 283 3.186909 CTCTCCATGTACAAAATCGCGA 58.813 45.455 13.09 13.09 0.00 5.87
283 284 2.285834 GCTCTCCATGTACAAAATCGCG 60.286 50.000 0.00 0.00 0.00 5.87
284 285 2.677836 TGCTCTCCATGTACAAAATCGC 59.322 45.455 0.00 0.00 0.00 4.58
285 286 4.944962 TTGCTCTCCATGTACAAAATCG 57.055 40.909 0.00 0.00 0.00 3.34
286 287 5.569059 CGTTTTGCTCTCCATGTACAAAATC 59.431 40.000 0.00 0.00 40.92 2.17
287 288 5.460646 CGTTTTGCTCTCCATGTACAAAAT 58.539 37.500 0.00 0.00 40.92 1.82
288 289 4.791411 GCGTTTTGCTCTCCATGTACAAAA 60.791 41.667 0.00 0.00 41.73 2.44
289 290 3.304391 GCGTTTTGCTCTCCATGTACAAA 60.304 43.478 0.00 0.00 41.73 2.83
290 291 2.225491 GCGTTTTGCTCTCCATGTACAA 59.775 45.455 0.00 0.00 41.73 2.41
291 292 1.804151 GCGTTTTGCTCTCCATGTACA 59.196 47.619 0.00 0.00 41.73 2.90
292 293 2.527442 GCGTTTTGCTCTCCATGTAC 57.473 50.000 0.00 0.00 41.73 2.90
303 304 4.034742 TCCCGAATTATAAGAGCGTTTTGC 59.965 41.667 0.00 0.00 46.98 3.68
304 305 5.499047 GTCCCGAATTATAAGAGCGTTTTG 58.501 41.667 0.00 0.00 0.00 2.44
305 306 4.269363 CGTCCCGAATTATAAGAGCGTTTT 59.731 41.667 0.00 0.00 0.00 2.43
306 307 3.800506 CGTCCCGAATTATAAGAGCGTTT 59.199 43.478 0.00 0.00 0.00 3.60
307 308 3.378339 CGTCCCGAATTATAAGAGCGTT 58.622 45.455 0.00 0.00 0.00 4.84
308 309 2.288030 CCGTCCCGAATTATAAGAGCGT 60.288 50.000 0.00 0.00 0.00 5.07
309 310 2.030540 TCCGTCCCGAATTATAAGAGCG 60.031 50.000 0.00 0.00 0.00 5.03
310 311 3.576648 CTCCGTCCCGAATTATAAGAGC 58.423 50.000 0.00 0.00 0.00 4.09
311 312 3.056749 CCCTCCGTCCCGAATTATAAGAG 60.057 52.174 0.00 0.00 0.00 2.85
312 313 2.895404 CCCTCCGTCCCGAATTATAAGA 59.105 50.000 0.00 0.00 0.00 2.10
313 314 2.895404 TCCCTCCGTCCCGAATTATAAG 59.105 50.000 0.00 0.00 0.00 1.73
314 315 2.895404 CTCCCTCCGTCCCGAATTATAA 59.105 50.000 0.00 0.00 0.00 0.98
315 316 2.158415 ACTCCCTCCGTCCCGAATTATA 60.158 50.000 0.00 0.00 0.00 0.98
316 317 1.339097 CTCCCTCCGTCCCGAATTAT 58.661 55.000 0.00 0.00 0.00 1.28
317 318 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
318 319 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
319 320 0.187851 ATACTCCCTCCGTCCCGAAT 59.812 55.000 0.00 0.00 0.00 3.34
320 321 0.032813 AATACTCCCTCCGTCCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
321 322 0.032813 AAATACTCCCTCCGTCCCGA 60.033 55.000 0.00 0.00 0.00 5.14
322 323 0.828677 AAAATACTCCCTCCGTCCCG 59.171 55.000 0.00 0.00 0.00 5.14
323 324 1.746171 GCAAAATACTCCCTCCGTCCC 60.746 57.143 0.00 0.00 0.00 4.46
324 325 1.065709 TGCAAAATACTCCCTCCGTCC 60.066 52.381 0.00 0.00 0.00 4.79
325 326 2.396590 TGCAAAATACTCCCTCCGTC 57.603 50.000 0.00 0.00 0.00 4.79
326 327 2.871096 TTGCAAAATACTCCCTCCGT 57.129 45.000 0.00 0.00 0.00 4.69
327 328 4.513198 TTTTTGCAAAATACTCCCTCCG 57.487 40.909 24.39 0.00 0.00 4.63
383 384 6.214412 AGGGACAATCTTTCTCACTGTTCTAT 59.786 38.462 0.00 0.00 0.00 1.98
391 392 8.794335 AATTACTTAGGGACAATCTTTCTCAC 57.206 34.615 0.00 0.00 0.00 3.51
446 447 7.445121 TGTTAGTGATGTCTCTTCTTCATTGT 58.555 34.615 0.00 0.00 0.00 2.71
453 454 8.254508 GGAAAGTATGTTAGTGATGTCTCTTCT 58.745 37.037 0.00 0.00 0.00 2.85
455 456 7.036220 CGGAAAGTATGTTAGTGATGTCTCTT 58.964 38.462 0.00 0.00 0.00 2.85
464 465 7.878477 TTCAAGTACGGAAAGTATGTTAGTG 57.122 36.000 1.19 0.00 37.69 2.74
465 466 8.308931 TGATTCAAGTACGGAAAGTATGTTAGT 58.691 33.333 7.03 0.00 37.69 2.24
478 480 5.862924 AAGAACATGTGATTCAAGTACGG 57.137 39.130 0.00 0.00 0.00 4.02
566 568 9.511272 GGAAGTAAAGGGATCTTGTTACTTAAA 57.489 33.333 19.19 0.00 36.99 1.52
578 580 6.177610 TGTTGTGTATGGAAGTAAAGGGATC 58.822 40.000 0.00 0.00 0.00 3.36
581 583 4.156008 GCTGTTGTGTATGGAAGTAAAGGG 59.844 45.833 0.00 0.00 0.00 3.95
583 585 4.156008 GGGCTGTTGTGTATGGAAGTAAAG 59.844 45.833 0.00 0.00 0.00 1.85
597 599 0.763035 ACGAGTAAAGGGGCTGTTGT 59.237 50.000 0.00 0.00 0.00 3.32
601 603 1.892209 AAACACGAGTAAAGGGGCTG 58.108 50.000 0.00 0.00 0.00 4.85
603 605 2.161012 GCTTAAACACGAGTAAAGGGGC 59.839 50.000 9.11 0.00 0.00 5.80
623 625 1.535462 TGGCTTGCGAAAGTTAGAAGC 59.465 47.619 4.74 0.00 38.64 3.86
627 629 7.247728 TGTTTATATTGGCTTGCGAAAGTTAG 58.752 34.615 4.74 0.00 0.00 2.34
629 631 6.019779 TGTTTATATTGGCTTGCGAAAGTT 57.980 33.333 4.74 0.00 0.00 2.66
630 632 5.637006 TGTTTATATTGGCTTGCGAAAGT 57.363 34.783 4.74 0.00 0.00 2.66
632 634 7.093354 TGATTTGTTTATATTGGCTTGCGAAA 58.907 30.769 0.00 0.00 0.00 3.46
633 635 6.625362 TGATTTGTTTATATTGGCTTGCGAA 58.375 32.000 0.00 0.00 0.00 4.70
659 663 9.834628 CATGTGTGGAAACTATTAAATACGTTT 57.165 29.630 0.00 0.00 32.76 3.60
686 704 1.299541 GATATGAGTTGTGCCACCCG 58.700 55.000 0.00 0.00 0.00 5.28
688 706 3.947196 TGATTGATATGAGTTGTGCCACC 59.053 43.478 0.00 0.00 0.00 4.61
690 708 4.395854 GTGTGATTGATATGAGTTGTGCCA 59.604 41.667 0.00 0.00 0.00 4.92
734 752 9.220767 GTGTAGTTTGACTGATTCCTTTTATCT 57.779 33.333 0.00 0.00 0.00 1.98
748 766 3.069729 GTCAGGTGGAGTGTAGTTTGACT 59.930 47.826 0.00 0.00 32.96 3.41
749 767 3.181469 TGTCAGGTGGAGTGTAGTTTGAC 60.181 47.826 0.00 0.00 35.48 3.18
769 788 1.594293 CGGTGCTTTCCTCACGTGT 60.594 57.895 16.51 0.00 35.39 4.49
829 848 3.746492 ACTCTTGTCAATGACTAAACCGC 59.254 43.478 14.97 0.00 33.15 5.68
913 933 2.923020 GTGTTTGCTTTGTGTGTGAAGG 59.077 45.455 0.00 0.00 0.00 3.46
1529 1565 2.143122 TGCAAACTAGCAGGTCGAAAG 58.857 47.619 0.00 0.00 40.11 2.62
1530 1566 2.248280 TGCAAACTAGCAGGTCGAAA 57.752 45.000 0.00 0.00 40.11 3.46
1540 1576 6.615264 ATGATGATAACAGCTGCAAACTAG 57.385 37.500 15.27 0.00 33.22 2.57
1636 1675 0.712380 TACGGTCCCCTACTTTCCCT 59.288 55.000 0.00 0.00 0.00 4.20
1676 1718 2.616510 GGCCACACTTTATCTGCTGAGT 60.617 50.000 0.00 0.00 0.00 3.41
1804 1846 2.372264 GCTCAGCTCATTTGGATTCCA 58.628 47.619 0.00 0.00 0.00 3.53
1805 1847 1.332997 CGCTCAGCTCATTTGGATTCC 59.667 52.381 0.00 0.00 0.00 3.01
1806 1848 1.268437 GCGCTCAGCTCATTTGGATTC 60.268 52.381 0.00 0.00 44.04 2.52
1807 1849 0.737219 GCGCTCAGCTCATTTGGATT 59.263 50.000 0.00 0.00 44.04 3.01
1808 1850 2.401967 GCGCTCAGCTCATTTGGAT 58.598 52.632 0.00 0.00 44.04 3.41
1821 1863 3.053455 GGTATCAGTGTATTGAGCGCTC 58.947 50.000 30.42 30.42 0.00 5.03
1894 1936 9.442047 CCAATCTTACTCTGACAGTTAAAGAAT 57.558 33.333 15.17 8.29 34.65 2.40
1895 1937 8.429641 ACCAATCTTACTCTGACAGTTAAAGAA 58.570 33.333 15.17 5.10 34.65 2.52
1896 1938 7.963532 ACCAATCTTACTCTGACAGTTAAAGA 58.036 34.615 14.19 14.19 35.20 2.52
1897 1939 8.091449 AGACCAATCTTACTCTGACAGTTAAAG 58.909 37.037 1.59 4.99 36.43 1.85
1898 1940 7.963532 AGACCAATCTTACTCTGACAGTTAAA 58.036 34.615 1.59 0.00 36.43 1.52
1899 1941 7.540474 AGACCAATCTTACTCTGACAGTTAA 57.460 36.000 1.59 1.31 36.43 2.01
1907 1949 7.504403 ACATTCCATAGACCAATCTTACTCTG 58.496 38.462 0.00 0.00 36.29 3.35
1940 1982 4.623932 TGTCTTGAACCAGAATACTGCT 57.376 40.909 0.00 0.00 42.25 4.24
1944 1986 7.265673 TGTAGCTATGTCTTGAACCAGAATAC 58.734 38.462 0.00 0.00 0.00 1.89
1945 1987 7.418337 TGTAGCTATGTCTTGAACCAGAATA 57.582 36.000 0.00 0.00 0.00 1.75
1954 1996 7.977789 TTGTGAAATTGTAGCTATGTCTTGA 57.022 32.000 0.00 0.00 0.00 3.02
2059 2101 3.979911 TGGGTTGCCATACAGATTGAAT 58.020 40.909 0.00 0.00 0.00 2.57
2184 2226 7.943079 AACCAATGATTGAGAACATACATCA 57.057 32.000 6.76 0.00 0.00 3.07
2267 2309 4.335082 TCTGTATTTACGCAACATGCAC 57.665 40.909 2.99 0.00 45.36 4.57
2303 2345 5.005299 GTCCCAAAACATTTGAAAGTTGACG 59.995 40.000 4.47 0.00 0.00 4.35
2398 2440 4.438472 GCAGAAGGCAGAAGCTCATAAAAG 60.438 45.833 0.00 0.00 43.97 2.27
2632 2675 5.534278 TGTGTAAGAATTTCATGGACTGCAA 59.466 36.000 0.00 0.00 0.00 4.08
2714 2757 7.982224 AGTAGTTTAGCCATTATCCGAAAAAC 58.018 34.615 0.00 0.00 0.00 2.43
2740 2783 9.646522 AAGCCTGAGATAAAATATAACCACAAT 57.353 29.630 0.00 0.00 0.00 2.71
3000 3044 1.067060 CTCATGCGGTTCGTGATAGGA 59.933 52.381 0.00 0.00 39.78 2.94
3387 3434 2.353605 GCATAGCTCCAGCCTATCTCAC 60.354 54.545 0.00 0.00 43.38 3.51
3470 3517 1.815421 CGGGAGTGTGCCATGTAGC 60.815 63.158 0.00 0.00 0.00 3.58
3626 3673 0.322546 ATCCCGCTCTTTCCCACAAC 60.323 55.000 0.00 0.00 0.00 3.32
3627 3674 0.404040 AATCCCGCTCTTTCCCACAA 59.596 50.000 0.00 0.00 0.00 3.33
3628 3675 0.404040 AAATCCCGCTCTTTCCCACA 59.596 50.000 0.00 0.00 0.00 4.17
3629 3676 0.811281 CAAATCCCGCTCTTTCCCAC 59.189 55.000 0.00 0.00 0.00 4.61
3630 3677 0.404040 ACAAATCCCGCTCTTTCCCA 59.596 50.000 0.00 0.00 0.00 4.37
3631 3678 1.095600 GACAAATCCCGCTCTTTCCC 58.904 55.000 0.00 0.00 0.00 3.97
3632 3679 2.010497 GAGACAAATCCCGCTCTTTCC 58.990 52.381 0.00 0.00 0.00 3.13
3633 3680 2.699954 TGAGACAAATCCCGCTCTTTC 58.300 47.619 0.00 0.00 0.00 2.62
3634 3681 2.859165 TGAGACAAATCCCGCTCTTT 57.141 45.000 0.00 0.00 0.00 2.52
3635 3682 2.636830 CATGAGACAAATCCCGCTCTT 58.363 47.619 0.00 0.00 0.00 2.85
3636 3683 1.134280 CCATGAGACAAATCCCGCTCT 60.134 52.381 0.00 0.00 0.00 4.09
3637 3684 1.303309 CCATGAGACAAATCCCGCTC 58.697 55.000 0.00 0.00 0.00 5.03
3638 3685 0.107017 CCCATGAGACAAATCCCGCT 60.107 55.000 0.00 0.00 0.00 5.52
3639 3686 0.394352 ACCCATGAGACAAATCCCGC 60.394 55.000 0.00 0.00 0.00 6.13
3640 3687 3.275617 TTACCCATGAGACAAATCCCG 57.724 47.619 0.00 0.00 0.00 5.14
3641 3688 4.792068 TGATTACCCATGAGACAAATCCC 58.208 43.478 0.00 0.00 0.00 3.85
3642 3689 5.684704 TCTGATTACCCATGAGACAAATCC 58.315 41.667 0.00 0.00 0.00 3.01
3643 3690 7.284034 ACATTCTGATTACCCATGAGACAAATC 59.716 37.037 0.00 0.00 0.00 2.17
3644 3691 7.067859 CACATTCTGATTACCCATGAGACAAAT 59.932 37.037 0.00 0.00 0.00 2.32
3645 3692 6.375174 CACATTCTGATTACCCATGAGACAAA 59.625 38.462 0.00 0.00 0.00 2.83
3646 3693 5.882000 CACATTCTGATTACCCATGAGACAA 59.118 40.000 0.00 0.00 0.00 3.18
3647 3694 5.430886 CACATTCTGATTACCCATGAGACA 58.569 41.667 0.00 0.00 0.00 3.41
3648 3695 4.274459 GCACATTCTGATTACCCATGAGAC 59.726 45.833 0.00 0.00 0.00 3.36
3649 3696 4.454678 GCACATTCTGATTACCCATGAGA 58.545 43.478 0.00 0.00 0.00 3.27
3650 3697 3.249320 CGCACATTCTGATTACCCATGAG 59.751 47.826 0.00 0.00 0.00 2.90
3651 3698 3.205338 CGCACATTCTGATTACCCATGA 58.795 45.455 0.00 0.00 0.00 3.07
3652 3699 2.945008 ACGCACATTCTGATTACCCATG 59.055 45.455 0.00 0.00 0.00 3.66
3653 3700 2.945008 CACGCACATTCTGATTACCCAT 59.055 45.455 0.00 0.00 0.00 4.00
3654 3701 2.027653 TCACGCACATTCTGATTACCCA 60.028 45.455 0.00 0.00 0.00 4.51
3655 3702 2.627945 TCACGCACATTCTGATTACCC 58.372 47.619 0.00 0.00 0.00 3.69
3656 3703 4.678509 TTTCACGCACATTCTGATTACC 57.321 40.909 0.00 0.00 0.00 2.85
3657 3704 6.801377 TCATTTTTCACGCACATTCTGATTAC 59.199 34.615 0.00 0.00 0.00 1.89
3658 3705 6.907741 TCATTTTTCACGCACATTCTGATTA 58.092 32.000 0.00 0.00 0.00 1.75
3659 3706 5.771469 TCATTTTTCACGCACATTCTGATT 58.229 33.333 0.00 0.00 0.00 2.57
3660 3707 5.375417 TCATTTTTCACGCACATTCTGAT 57.625 34.783 0.00 0.00 0.00 2.90
3661 3708 4.827304 TCATTTTTCACGCACATTCTGA 57.173 36.364 0.00 0.00 0.00 3.27
3662 3709 5.666913 GCAATCATTTTTCACGCACATTCTG 60.667 40.000 0.00 0.00 0.00 3.02
3663 3710 4.386652 GCAATCATTTTTCACGCACATTCT 59.613 37.500 0.00 0.00 0.00 2.40
3664 3711 4.434593 GGCAATCATTTTTCACGCACATTC 60.435 41.667 0.00 0.00 0.00 2.67
3665 3712 3.432933 GGCAATCATTTTTCACGCACATT 59.567 39.130 0.00 0.00 0.00 2.71
3666 3713 2.995258 GGCAATCATTTTTCACGCACAT 59.005 40.909 0.00 0.00 0.00 3.21
3667 3714 2.223900 TGGCAATCATTTTTCACGCACA 60.224 40.909 0.00 0.00 0.00 4.57
3668 3715 2.402305 TGGCAATCATTTTTCACGCAC 58.598 42.857 0.00 0.00 0.00 5.34
3669 3716 2.808523 TGGCAATCATTTTTCACGCA 57.191 40.000 0.00 0.00 0.00 5.24
3670 3717 3.514645 AGATGGCAATCATTTTTCACGC 58.485 40.909 3.34 0.00 35.97 5.34
3671 3718 4.735985 TGAGATGGCAATCATTTTTCACG 58.264 39.130 3.34 0.00 35.97 4.35
3672 3719 4.565564 GCTGAGATGGCAATCATTTTTCAC 59.434 41.667 3.34 0.00 35.97 3.18
3673 3720 4.382254 GGCTGAGATGGCAATCATTTTTCA 60.382 41.667 3.34 0.00 35.97 2.69
3674 3721 4.117685 GGCTGAGATGGCAATCATTTTTC 58.882 43.478 3.34 0.00 35.97 2.29
3675 3722 3.773119 AGGCTGAGATGGCAATCATTTTT 59.227 39.130 3.34 0.00 35.97 1.94
3676 3723 3.371965 AGGCTGAGATGGCAATCATTTT 58.628 40.909 3.34 0.00 35.97 1.82
3677 3724 3.028094 AGGCTGAGATGGCAATCATTT 57.972 42.857 3.34 0.00 35.97 2.32
3678 3725 2.750141 AGGCTGAGATGGCAATCATT 57.250 45.000 3.34 0.00 35.97 2.57
3679 3726 2.709934 ACTAGGCTGAGATGGCAATCAT 59.290 45.455 3.34 0.00 39.13 2.45
3680 3727 2.121948 ACTAGGCTGAGATGGCAATCA 58.878 47.619 3.34 0.00 35.03 2.57
3681 3728 2.926778 ACTAGGCTGAGATGGCAATC 57.073 50.000 0.00 0.00 34.73 2.67
3682 3729 3.312890 AGTACTAGGCTGAGATGGCAAT 58.687 45.455 0.00 0.00 34.73 3.56
3683 3730 2.752030 AGTACTAGGCTGAGATGGCAA 58.248 47.619 0.00 0.00 34.73 4.52
3684 3731 2.432146 CAAGTACTAGGCTGAGATGGCA 59.568 50.000 0.00 0.00 34.73 4.92
3685 3732 2.432510 ACAAGTACTAGGCTGAGATGGC 59.567 50.000 0.00 0.00 0.00 4.40
3686 3733 4.081420 ACAACAAGTACTAGGCTGAGATGG 60.081 45.833 0.00 0.00 0.00 3.51
3687 3734 4.867047 CACAACAAGTACTAGGCTGAGATG 59.133 45.833 0.00 0.00 0.00 2.90
3688 3735 4.081420 CCACAACAAGTACTAGGCTGAGAT 60.081 45.833 0.00 0.00 0.00 2.75
3689 3736 3.258372 CCACAACAAGTACTAGGCTGAGA 59.742 47.826 0.00 0.00 0.00 3.27
3690 3737 3.589988 CCACAACAAGTACTAGGCTGAG 58.410 50.000 0.00 0.00 0.00 3.35
3691 3738 2.301870 CCCACAACAAGTACTAGGCTGA 59.698 50.000 0.00 0.00 0.00 4.26
3692 3739 2.301870 TCCCACAACAAGTACTAGGCTG 59.698 50.000 0.00 0.00 0.00 4.85
3693 3740 2.616524 TCCCACAACAAGTACTAGGCT 58.383 47.619 0.00 0.00 0.00 4.58
3694 3741 3.412237 TTCCCACAACAAGTACTAGGC 57.588 47.619 0.00 0.00 0.00 3.93
3695 3742 4.995487 GTCTTTCCCACAACAAGTACTAGG 59.005 45.833 0.00 0.00 0.00 3.02
3696 3743 4.684703 CGTCTTTCCCACAACAAGTACTAG 59.315 45.833 0.00 0.00 0.00 2.57
3697 3744 4.099881 ACGTCTTTCCCACAACAAGTACTA 59.900 41.667 0.00 0.00 0.00 1.82
3698 3745 3.118519 ACGTCTTTCCCACAACAAGTACT 60.119 43.478 0.00 0.00 0.00 2.73
3699 3746 3.200483 ACGTCTTTCCCACAACAAGTAC 58.800 45.455 0.00 0.00 0.00 2.73
3700 3747 3.547054 ACGTCTTTCCCACAACAAGTA 57.453 42.857 0.00 0.00 0.00 2.24
3701 3748 2.413310 ACGTCTTTCCCACAACAAGT 57.587 45.000 0.00 0.00 0.00 3.16
3702 3749 4.886247 TTTACGTCTTTCCCACAACAAG 57.114 40.909 0.00 0.00 0.00 3.16
3703 3750 5.450688 CCAATTTACGTCTTTCCCACAACAA 60.451 40.000 0.00 0.00 0.00 2.83
3704 3751 4.036971 CCAATTTACGTCTTTCCCACAACA 59.963 41.667 0.00 0.00 0.00 3.33
3705 3752 4.037089 ACCAATTTACGTCTTTCCCACAAC 59.963 41.667 0.00 0.00 0.00 3.32
3717 3764 2.566913 TGACAGTGCACCAATTTACGT 58.433 42.857 14.63 0.00 0.00 3.57
3735 3782 5.246203 ACAACAAAGTACTAGGCTGAGATGA 59.754 40.000 0.00 0.00 0.00 2.92
3752 3799 5.559148 ATTTATGCCTTTCCCACAACAAA 57.441 34.783 0.00 0.00 0.00 2.83
3812 3868 7.555554 GCCATAAGAGCACATATCCTCATAAAT 59.444 37.037 0.00 0.00 0.00 1.40
3850 3906 4.019051 TGGAGATCTTTGGAGATGAAGCAA 60.019 41.667 0.00 0.00 42.66 3.91
3867 3923 2.577970 ACCCCCTCTTTTCATGGAGAT 58.422 47.619 0.00 0.00 0.00 2.75
3904 3960 8.769891 CATCAACATTAAGTTTAACAAAACCCC 58.230 33.333 0.00 0.00 38.74 4.95
3960 4021 2.617308 TCTCTTAGTACCGCCTCAATCG 59.383 50.000 0.00 0.00 0.00 3.34
4104 4165 9.754382 TCAGGTTGACCGAGTTAATAATAATAC 57.246 33.333 0.00 0.00 42.08 1.89
4106 4167 9.326413 CTTCAGGTTGACCGAGTTAATAATAAT 57.674 33.333 0.00 0.00 42.08 1.28
4107 4168 7.767198 CCTTCAGGTTGACCGAGTTAATAATAA 59.233 37.037 0.00 0.00 42.08 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.