Multiple sequence alignment - TraesCS4D01G190600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G190600 chr4D 100.000 5328 0 0 1 5328 333774899 333769572 0.000000e+00 9840
1 TraesCS4D01G190600 chr4D 97.366 1860 37 7 3480 5328 333681243 333679385 0.000000e+00 3153
2 TraesCS4D01G190600 chr4D 91.968 249 17 3 4 250 339451246 339451493 3.950000e-91 346
3 TraesCS4D01G190600 chr4D 97.110 173 5 0 2989 3161 452926130 452926302 5.220000e-75 292
4 TraesCS4D01G190600 chr4D 95.604 182 5 3 2986 3164 93338032 93338213 6.750000e-74 289
5 TraesCS4D01G190600 chr4D 92.903 155 10 1 4770 4924 347524310 347524157 1.930000e-54 224
6 TraesCS4D01G190600 chr4D 90.116 172 15 2 4757 4928 3590462 3590631 6.950000e-54 222
7 TraesCS4D01G190600 chr4A 95.708 1165 41 2 3464 4619 139872026 139873190 0.000000e+00 1866
8 TraesCS4D01G190600 chr4A 95.889 827 29 4 766 1591 139869466 139870288 0.000000e+00 1334
9 TraesCS4D01G190600 chr4A 90.949 917 58 13 2060 2961 139870763 139871669 0.000000e+00 1210
10 TraesCS4D01G190600 chr4A 86.680 503 51 7 285 776 29011599 29012096 1.310000e-150 544
11 TraesCS4D01G190600 chr4A 92.550 349 16 6 3157 3499 139871680 139872024 4.790000e-135 492
12 TraesCS4D01G190600 chr4A 90.980 255 21 2 1 254 599341225 599341478 5.110000e-90 342
13 TraesCS4D01G190600 chr4A 91.200 250 22 0 1 250 111436347 111436098 1.840000e-89 340
14 TraesCS4D01G190600 chr4A 96.667 60 2 0 4703 4762 139873189 139873248 3.400000e-17 100
15 TraesCS4D01G190600 chr4B 96.116 1107 33 5 489 1595 411718719 411717623 0.000000e+00 1797
16 TraesCS4D01G190600 chr4B 89.030 1103 87 16 1822 2910 411717570 411716488 0.000000e+00 1336
17 TraesCS4D01G190600 chr4B 91.988 961 58 15 3157 4106 411716117 411715165 0.000000e+00 1330
18 TraesCS4D01G190600 chr4B 88.263 426 36 10 4196 4617 411715052 411714637 1.030000e-136 497
19 TraesCS4D01G190600 chr4B 90.291 103 5 3 4603 4704 477398905 477399003 4.330000e-26 130
20 TraesCS4D01G190600 chr1D 91.111 540 37 3 241 773 142333795 142333260 0.000000e+00 721
21 TraesCS4D01G190600 chr1D 92.674 273 18 1 5058 5328 365751174 365751446 5.000000e-105 392
22 TraesCS4D01G190600 chr1D 88.696 230 22 2 1593 1820 226450036 226449809 1.460000e-70 278
23 TraesCS4D01G190600 chr7B 89.054 539 42 4 241 772 608367943 608368471 0.000000e+00 652
24 TraesCS4D01G190600 chr7B 87.013 385 39 4 394 771 9631427 9631807 1.770000e-114 424
25 TraesCS4D01G190600 chr7B 88.362 232 23 3 1591 1820 559265054 559264825 5.260000e-70 276
26 TraesCS4D01G190600 chr7B 90.506 158 14 1 4771 4927 679620663 679620506 1.940000e-49 207
27 TraesCS4D01G190600 chr7B 88.202 178 16 5 4759 4933 697617272 697617447 1.940000e-49 207
28 TraesCS4D01G190600 chr5A 88.760 516 47 3 241 749 681407909 681408420 5.860000e-174 621
29 TraesCS4D01G190600 chr5A 90.129 233 17 5 1591 1820 444536924 444536695 1.120000e-76 298
30 TraesCS4D01G190600 chr5A 95.531 179 6 2 2980 3158 382566814 382566638 8.730000e-73 285
31 TraesCS4D01G190600 chr5A 88.696 230 22 3 1593 1820 178032386 178032159 1.460000e-70 278
32 TraesCS4D01G190600 chrUn 85.820 543 59 8 241 775 21283256 21282724 1.300000e-155 560
33 TraesCS4D01G190600 chrUn 89.634 164 16 1 4771 4933 34210914 34210751 1.940000e-49 207
34 TraesCS4D01G190600 chr7A 85.451 543 67 4 241 774 708911374 708910835 6.030000e-154 555
35 TraesCS4D01G190600 chr3D 84.771 545 71 4 241 776 313176240 313176781 2.180000e-148 536
36 TraesCS4D01G190600 chr3D 92.857 266 17 1 5065 5328 535649243 535648978 8.370000e-103 385
37 TraesCS4D01G190600 chr3D 97.110 173 5 0 2989 3161 467257824 467257996 5.220000e-75 292
38 TraesCS4D01G190600 chr3D 90.385 156 15 0 4769 4924 410670226 410670071 6.990000e-49 206
39 TraesCS4D01G190600 chr2A 85.770 513 60 13 991 1498 43133664 43134168 1.020000e-146 531
40 TraesCS4D01G190600 chr2A 92.562 242 18 0 1 242 339090585 339090826 1.100000e-91 348
41 TraesCS4D01G190600 chr2A 92.857 238 17 0 6 243 476402235 476402472 3.950000e-91 346
42 TraesCS4D01G190600 chr2A 83.665 251 41 0 2609 2859 43135395 43135645 2.480000e-58 237
43 TraesCS4D01G190600 chr2A 93.333 120 8 0 2619 2738 538895576 538895695 1.520000e-40 178
44 TraesCS4D01G190600 chr2A 92.632 95 3 2 4612 4705 618975027 618975118 3.350000e-27 134
45 TraesCS4D01G190600 chr2D 85.575 513 61 13 991 1498 38065129 38065633 4.730000e-145 525
46 TraesCS4D01G190600 chr2D 92.364 275 19 1 5056 5328 458301699 458301973 1.800000e-104 390
47 TraesCS4D01G190600 chr2D 97.110 173 5 0 2989 3161 272176587 272176759 5.220000e-75 292
48 TraesCS4D01G190600 chr2D 97.110 173 5 0 2989 3161 309243656 309243828 5.220000e-75 292
49 TraesCS4D01G190600 chr2D 97.110 173 5 0 2989 3161 515499291 515499463 5.220000e-75 292
50 TraesCS4D01G190600 chr2D 85.874 269 31 1 241 502 344975013 344975281 4.060000e-71 279
51 TraesCS4D01G190600 chr2D 85.874 269 31 1 241 502 344977562 344977830 4.060000e-71 279
52 TraesCS4D01G190600 chr2B 85.575 513 61 13 991 1498 66541508 66542012 4.730000e-145 525
53 TraesCS4D01G190600 chr2B 92.527 281 18 2 5050 5328 17154004 17154283 2.990000e-107 399
54 TraesCS4D01G190600 chr2B 93.004 243 16 1 1 242 198740089 198740331 2.360000e-93 353
55 TraesCS4D01G190600 chr1A 83.610 543 75 10 241 774 561332992 561333529 1.030000e-136 497
56 TraesCS4D01G190600 chr1A 92.199 282 19 2 5049 5328 482776764 482776484 3.870000e-106 396
57 TraesCS4D01G190600 chr1A 88.362 232 21 3 1593 1820 293712671 293712442 1.890000e-69 274
58 TraesCS4D01G190600 chr5D 83.333 546 77 6 241 776 502649739 502649198 4.790000e-135 492
59 TraesCS4D01G190600 chr5D 92.674 273 18 1 5058 5328 505180259 505180531 5.000000e-105 392
60 TraesCS4D01G190600 chr5D 97.110 173 5 0 2989 3161 142328060 142328232 5.220000e-75 292
61 TraesCS4D01G190600 chr5D 89.928 139 14 0 2602 2740 505090988 505091126 4.240000e-41 180
62 TraesCS4D01G190600 chr5D 89.524 105 5 4 4618 4720 475004936 475004836 1.560000e-25 128
63 TraesCS4D01G190600 chr6B 82.721 544 63 14 241 775 300937184 300937705 6.290000e-124 455
64 TraesCS4D01G190600 chr6B 93.004 243 17 0 1 243 659538758 659539000 6.560000e-94 355
65 TraesCS4D01G190600 chr6B 88.288 111 7 4 4602 4711 597986953 597987058 1.560000e-25 128
66 TraesCS4D01G190600 chr6A 93.407 273 16 1 5058 5328 346586504 346586776 2.310000e-108 403
67 TraesCS4D01G190600 chr6A 86.131 274 31 2 244 510 57708902 57708629 6.750000e-74 289
68 TraesCS4D01G190600 chr6A 91.837 98 4 2 4616 4712 553003280 553003186 3.350000e-27 134
69 TraesCS4D01G190600 chr6D 93.066 274 16 2 5057 5328 446421669 446421941 1.080000e-106 398
70 TraesCS4D01G190600 chr6D 93.478 92 2 2 4615 4705 104147593 104147681 3.350000e-27 134
71 TraesCS4D01G190600 chr3A 86.405 331 38 4 445 774 482056122 482055798 6.560000e-94 355
72 TraesCS4D01G190600 chr3A 88.546 227 23 3 1583 1807 114570724 114570949 6.800000e-69 272
73 TraesCS4D01G190600 chr5B 92.562 242 16 2 1 242 606309331 606309092 3.950000e-91 346
74 TraesCS4D01G190600 chr5B 88.785 107 6 4 4618 4721 417444378 417444275 5.600000e-25 126
75 TraesCS4D01G190600 chr1B 91.903 247 19 1 1 247 389304880 389305125 1.420000e-90 344
76 TraesCS4D01G190600 chr1B 92.000 200 12 4 2985 3183 480970206 480970402 1.460000e-70 278
77 TraesCS4D01G190600 chr7D 88.841 233 21 4 1591 1820 555059205 555059435 1.130000e-71 281
78 TraesCS4D01G190600 chr7D 92.857 154 10 1 4771 4924 119019151 119018999 6.950000e-54 222
79 TraesCS4D01G190600 chr7D 88.690 168 17 2 4769 4934 604890297 604890464 2.520000e-48 204
80 TraesCS4D01G190600 chr7D 92.632 95 3 2 4617 4710 599690661 599690752 3.350000e-27 134
81 TraesCS4D01G190600 chr3B 88.793 232 22 3 1591 1820 755478791 755478562 1.130000e-71 281
82 TraesCS4D01G190600 chr3B 88.696 230 22 3 1593 1820 254192881 254193108 1.460000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G190600 chr4D 333769572 333774899 5327 True 9840.0 9840 100.00000 1 5328 1 chr4D.!!$R2 5327
1 TraesCS4D01G190600 chr4D 333679385 333681243 1858 True 3153.0 3153 97.36600 3480 5328 1 chr4D.!!$R1 1848
2 TraesCS4D01G190600 chr4A 139869466 139873248 3782 False 1000.4 1866 94.35260 766 4762 5 chr4A.!!$F3 3996
3 TraesCS4D01G190600 chr4B 411714637 411718719 4082 True 1240.0 1797 91.34925 489 4617 4 chr4B.!!$R1 4128
4 TraesCS4D01G190600 chr1D 142333260 142333795 535 True 721.0 721 91.11100 241 773 1 chr1D.!!$R1 532
5 TraesCS4D01G190600 chr7B 608367943 608368471 528 False 652.0 652 89.05400 241 772 1 chr7B.!!$F2 531
6 TraesCS4D01G190600 chr5A 681407909 681408420 511 False 621.0 621 88.76000 241 749 1 chr5A.!!$F1 508
7 TraesCS4D01G190600 chrUn 21282724 21283256 532 True 560.0 560 85.82000 241 775 1 chrUn.!!$R1 534
8 TraesCS4D01G190600 chr7A 708910835 708911374 539 True 555.0 555 85.45100 241 774 1 chr7A.!!$R1 533
9 TraesCS4D01G190600 chr3D 313176240 313176781 541 False 536.0 536 84.77100 241 776 1 chr3D.!!$F1 535
10 TraesCS4D01G190600 chr2A 43133664 43135645 1981 False 384.0 531 84.71750 991 2859 2 chr2A.!!$F5 1868
11 TraesCS4D01G190600 chr2D 38065129 38065633 504 False 525.0 525 85.57500 991 1498 1 chr2D.!!$F1 507
12 TraesCS4D01G190600 chr2D 344975013 344977830 2817 False 279.0 279 85.87400 241 502 2 chr2D.!!$F6 261
13 TraesCS4D01G190600 chr2B 66541508 66542012 504 False 525.0 525 85.57500 991 1498 1 chr2B.!!$F2 507
14 TraesCS4D01G190600 chr1A 561332992 561333529 537 False 497.0 497 83.61000 241 774 1 chr1A.!!$F1 533
15 TraesCS4D01G190600 chr5D 502649198 502649739 541 True 492.0 492 83.33300 241 776 1 chr5D.!!$R2 535
16 TraesCS4D01G190600 chr6B 300937184 300937705 521 False 455.0 455 82.72100 241 775 1 chr6B.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 1.860078 CGCTGTTTTGAGGGACGAC 59.140 57.895 0.0 0.0 0.00 4.34 F
1377 3707 1.160989 GCTCGCTCGAGGAGATCATA 58.839 55.000 25.8 0.0 42.19 2.15 F
2625 6245 0.244178 GTCAGGTTCTCTCGGTGGTC 59.756 60.000 0.0 0.0 0.00 4.02 F
3260 7004 1.941812 CGTGTTGTTGGGAGTGAGC 59.058 57.895 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 4047 0.806492 CTCGCCCTAGGTTTTCTCGC 60.806 60.000 8.29 0.62 0.00 5.03 R
2878 6498 1.075601 AAGGAATCCTTGCCCAGTGA 58.924 50.000 14.68 0.00 42.96 3.41 R
4109 7902 4.941713 AGGGGCATCCAGTTATGTTTTTA 58.058 39.130 0.00 0.00 38.24 1.52 R
5076 9028 1.658596 CATGTCGAATACACCACACGG 59.341 52.381 0.00 0.00 42.09 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.601243 ACTTCGCGTATAAAATTTGATCAAAG 57.399 30.769 24.17 10.49 33.32 2.77
27 28 8.234546 ACTTCGCGTATAAAATTTGATCAAAGT 58.765 29.630 24.17 19.88 33.32 2.66
28 29 8.595781 TTCGCGTATAAAATTTGATCAAAGTC 57.404 30.769 24.17 9.96 33.32 3.01
29 30 7.744059 TCGCGTATAAAATTTGATCAAAGTCA 58.256 30.769 24.17 14.37 33.32 3.41
30 31 8.231161 TCGCGTATAAAATTTGATCAAAGTCAA 58.769 29.630 24.17 14.34 36.38 3.18
41 42 8.909708 TTTGATCAAAGTCAAACTACACAAAG 57.090 30.769 16.91 0.00 41.70 2.77
42 43 7.624360 TGATCAAAGTCAAACTACACAAAGT 57.376 32.000 0.00 0.00 0.00 2.66
43 44 8.050778 TGATCAAAGTCAAACTACACAAAGTT 57.949 30.769 0.00 0.00 41.46 2.66
124 125 7.459394 GAAAATACATTTCATGGTGCATCTG 57.541 36.000 0.00 0.00 45.58 2.90
125 126 6.778834 AAATACATTTCATGGTGCATCTGA 57.221 33.333 0.00 0.00 33.60 3.27
126 127 6.971726 AATACATTTCATGGTGCATCTGAT 57.028 33.333 0.00 0.00 33.60 2.90
127 128 8.467963 AAATACATTTCATGGTGCATCTGATA 57.532 30.769 0.00 0.00 33.60 2.15
128 129 8.467963 AATACATTTCATGGTGCATCTGATAA 57.532 30.769 0.00 0.00 33.60 1.75
129 130 6.971726 ACATTTCATGGTGCATCTGATAAT 57.028 33.333 0.00 1.10 33.60 1.28
130 131 9.743581 ATACATTTCATGGTGCATCTGATAATA 57.256 29.630 0.00 0.00 33.60 0.98
131 132 8.645814 ACATTTCATGGTGCATCTGATAATAT 57.354 30.769 0.00 0.00 33.60 1.28
132 133 9.085645 ACATTTCATGGTGCATCTGATAATATT 57.914 29.630 0.00 0.00 33.60 1.28
133 134 9.353999 CATTTCATGGTGCATCTGATAATATTG 57.646 33.333 0.00 0.00 0.00 1.90
134 135 8.694581 TTTCATGGTGCATCTGATAATATTGA 57.305 30.769 0.00 0.00 0.00 2.57
135 136 8.873186 TTCATGGTGCATCTGATAATATTGAT 57.127 30.769 0.00 0.00 0.00 2.57
136 137 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
137 138 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
138 139 9.569167 CATGGTGCATCTGATAATATTGATTTC 57.431 33.333 0.00 0.00 0.00 2.17
139 140 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
140 141 8.570488 TGGTGCATCTGATAATATTGATTTCAC 58.430 33.333 0.00 3.51 0.00 3.18
141 142 8.570488 GGTGCATCTGATAATATTGATTTCACA 58.430 33.333 0.00 0.00 0.00 3.58
208 209 9.921637 TTTATAAATCATGACTTTGACCAAACC 57.078 29.630 0.00 0.00 0.00 3.27
209 210 7.781324 ATAAATCATGACTTTGACCAAACCT 57.219 32.000 0.00 0.00 0.00 3.50
210 211 6.484364 AAATCATGACTTTGACCAAACCTT 57.516 33.333 0.00 0.00 0.00 3.50
211 212 7.595819 AAATCATGACTTTGACCAAACCTTA 57.404 32.000 0.00 0.00 0.00 2.69
212 213 7.781324 AATCATGACTTTGACCAAACCTTAT 57.219 32.000 0.00 0.00 0.00 1.73
213 214 8.877864 AATCATGACTTTGACCAAACCTTATA 57.122 30.769 0.00 0.00 0.00 0.98
214 215 9.479549 AATCATGACTTTGACCAAACCTTATAT 57.520 29.630 0.00 0.00 0.00 0.86
215 216 8.279970 TCATGACTTTGACCAAACCTTATATG 57.720 34.615 0.00 0.00 0.00 1.78
216 217 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
217 218 6.007076 TGACTTTGACCAAACCTTATATGCA 58.993 36.000 0.00 0.00 0.00 3.96
218 219 6.150976 TGACTTTGACCAAACCTTATATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
219 220 6.245408 ACTTTGACCAAACCTTATATGCAGA 58.755 36.000 0.00 0.00 0.00 4.26
220 221 6.151144 ACTTTGACCAAACCTTATATGCAGAC 59.849 38.462 0.00 0.00 0.00 3.51
221 222 5.435686 TGACCAAACCTTATATGCAGACT 57.564 39.130 0.00 0.00 0.00 3.24
222 223 6.553953 TGACCAAACCTTATATGCAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
223 224 6.346096 TGACCAAACCTTATATGCAGACTAC 58.654 40.000 0.00 0.00 0.00 2.73
224 225 6.070481 TGACCAAACCTTATATGCAGACTACA 60.070 38.462 0.00 0.00 0.00 2.74
225 226 6.717289 ACCAAACCTTATATGCAGACTACAA 58.283 36.000 0.00 0.00 0.00 2.41
226 227 7.172342 ACCAAACCTTATATGCAGACTACAAA 58.828 34.615 0.00 0.00 0.00 2.83
227 228 7.336931 ACCAAACCTTATATGCAGACTACAAAG 59.663 37.037 0.00 0.00 0.00 2.77
228 229 7.552687 CCAAACCTTATATGCAGACTACAAAGA 59.447 37.037 0.00 0.00 0.00 2.52
229 230 8.946085 CAAACCTTATATGCAGACTACAAAGAA 58.054 33.333 0.00 0.00 0.00 2.52
230 231 9.515226 AAACCTTATATGCAGACTACAAAGAAA 57.485 29.630 0.00 0.00 0.00 2.52
231 232 8.494016 ACCTTATATGCAGACTACAAAGAAAC 57.506 34.615 0.00 0.00 0.00 2.78
232 233 8.100791 ACCTTATATGCAGACTACAAAGAAACA 58.899 33.333 0.00 0.00 0.00 2.83
233 234 8.607459 CCTTATATGCAGACTACAAAGAAACAG 58.393 37.037 0.00 0.00 0.00 3.16
234 235 9.371136 CTTATATGCAGACTACAAAGAAACAGA 57.629 33.333 0.00 0.00 0.00 3.41
235 236 7.840342 ATATGCAGACTACAAAGAAACAGAG 57.160 36.000 0.00 0.00 0.00 3.35
236 237 4.380531 TGCAGACTACAAAGAAACAGAGG 58.619 43.478 0.00 0.00 0.00 3.69
237 238 3.748568 GCAGACTACAAAGAAACAGAGGG 59.251 47.826 0.00 0.00 0.00 4.30
238 239 4.503296 GCAGACTACAAAGAAACAGAGGGA 60.503 45.833 0.00 0.00 0.00 4.20
239 240 5.233988 CAGACTACAAAGAAACAGAGGGAG 58.766 45.833 0.00 0.00 0.00 4.30
357 358 1.860078 CGCTGTTTTGAGGGACGAC 59.140 57.895 0.00 0.00 0.00 4.34
404 408 2.170166 TGGAGAATTGATTGGTGCACC 58.830 47.619 29.67 29.67 0.00 5.01
482 493 5.801444 GGTTGCAACCGTATTGTTATTAACC 59.199 40.000 31.73 4.60 39.66 2.85
725 3049 8.275187 TGTATCCCTCCTCATAAACAATGTAT 57.725 34.615 0.00 0.00 36.89 2.29
726 3050 8.723365 TGTATCCCTCCTCATAAACAATGTATT 58.277 33.333 0.00 0.00 36.89 1.89
879 3206 9.762381 AGAGGAAAGAAAGAGAGTAAGATTCTA 57.238 33.333 0.00 0.00 30.56 2.10
927 3254 4.278058 GTCTTATCGAAGCACCGTAGTAC 58.722 47.826 0.00 0.00 32.21 2.73
947 3274 2.167487 ACAAGAAAGCCCGATCTCTCTC 59.833 50.000 0.00 0.00 0.00 3.20
1377 3707 1.160989 GCTCGCTCGAGGAGATCATA 58.839 55.000 25.80 0.00 42.19 2.15
1431 3761 2.292257 TGGGCCTGAGTACTATGTCAGT 60.292 50.000 4.53 0.00 38.88 3.41
1498 3828 7.078249 TCCATACTGATGCATAACAAGGTAT 57.922 36.000 0.00 0.00 0.00 2.73
1499 3829 7.161404 TCCATACTGATGCATAACAAGGTATC 58.839 38.462 0.00 0.00 0.00 2.24
1500 3830 7.016563 TCCATACTGATGCATAACAAGGTATCT 59.983 37.037 0.00 0.00 0.00 1.98
1509 3839 9.632638 ATGCATAACAAGGTATCTTTCTGTAAT 57.367 29.630 0.00 0.00 0.00 1.89
1533 4016 5.619132 TCTGCATTTATCAGATGGACTCA 57.381 39.130 0.00 0.00 35.81 3.41
1564 4047 8.673711 TGGATTAGAATTGAATACTTTTGACCG 58.326 33.333 0.00 0.00 0.00 4.79
1595 4079 1.123928 AGGGCGAGTTCAGATTAGGG 58.876 55.000 0.00 0.00 0.00 3.53
1596 4080 0.533085 GGGCGAGTTCAGATTAGGGC 60.533 60.000 0.00 0.00 0.00 5.19
1602 4106 3.118592 CGAGTTCAGATTAGGGCTCCTTT 60.119 47.826 0.00 0.00 34.61 3.11
1604 4108 3.846588 AGTTCAGATTAGGGCTCCTTTGA 59.153 43.478 0.00 0.00 34.61 2.69
1606 4110 5.044550 AGTTCAGATTAGGGCTCCTTTGATT 60.045 40.000 0.00 0.00 34.61 2.57
1607 4111 4.785301 TCAGATTAGGGCTCCTTTGATTG 58.215 43.478 0.00 0.00 34.61 2.67
1609 4113 5.044919 TCAGATTAGGGCTCCTTTGATTGAA 60.045 40.000 0.00 0.00 34.61 2.69
1632 4136 9.099071 TGAAAGGATTTTCATAGGAATTTTGGA 57.901 29.630 0.00 0.00 45.77 3.53
1633 4137 9.591792 GAAAGGATTTTCATAGGAATTTTGGAG 57.408 33.333 0.00 0.00 39.27 3.86
1634 4138 7.666063 AGGATTTTCATAGGAATTTTGGAGG 57.334 36.000 0.00 0.00 31.93 4.30
1635 4139 7.421684 AGGATTTTCATAGGAATTTTGGAGGA 58.578 34.615 0.00 0.00 31.93 3.71
1636 4140 8.069979 AGGATTTTCATAGGAATTTTGGAGGAT 58.930 33.333 0.00 0.00 31.93 3.24
1637 4141 8.708378 GGATTTTCATAGGAATTTTGGAGGATT 58.292 33.333 0.00 0.00 31.93 3.01
1640 4144 9.989296 TTTTCATAGGAATTTTGGAGGATTAGA 57.011 29.630 0.00 0.00 31.93 2.10
1641 4145 9.989296 TTTCATAGGAATTTTGGAGGATTAGAA 57.011 29.630 0.00 0.00 31.93 2.10
1643 4147 9.799106 TCATAGGAATTTTGGAGGATTAGAATC 57.201 33.333 0.00 0.00 34.66 2.52
1676 4180 7.475137 TTTTTCCTATTTGGGATGTTCGATT 57.525 32.000 0.00 0.00 35.07 3.34
1677 4181 6.693315 TTTCCTATTTGGGATGTTCGATTC 57.307 37.500 0.00 0.00 35.07 2.52
1678 4182 5.366482 TCCTATTTGGGATGTTCGATTCA 57.634 39.130 0.00 0.00 36.20 2.57
1679 4183 5.940617 TCCTATTTGGGATGTTCGATTCAT 58.059 37.500 3.77 3.77 36.20 2.57
1680 4184 7.073457 TCCTATTTGGGATGTTCGATTCATA 57.927 36.000 4.06 0.00 36.20 2.15
1681 4185 7.689299 TCCTATTTGGGATGTTCGATTCATAT 58.311 34.615 4.06 0.00 36.20 1.78
1682 4186 8.163408 TCCTATTTGGGATGTTCGATTCATATT 58.837 33.333 4.06 0.00 36.20 1.28
1683 4187 9.448438 CCTATTTGGGATGTTCGATTCATATTA 57.552 33.333 4.06 0.00 0.00 0.98
1687 4191 8.916628 TTGGGATGTTCGATTCATATTATTGA 57.083 30.769 4.06 0.00 0.00 2.57
1688 4192 8.916628 TGGGATGTTCGATTCATATTATTGAA 57.083 30.769 4.06 0.00 39.77 2.69
1689 4193 9.519191 TGGGATGTTCGATTCATATTATTGAAT 57.481 29.630 0.00 0.00 46.39 2.57
1729 4233 8.536340 TCCTAAGGATTTCTTTCTACTACTCC 57.464 38.462 0.00 0.00 36.93 3.85
1730 4234 7.564292 TCCTAAGGATTTCTTTCTACTACTCCC 59.436 40.741 0.00 0.00 36.93 4.30
1731 4235 6.563037 AAGGATTTCTTTCTACTACTCCCC 57.437 41.667 0.00 0.00 29.99 4.81
1732 4236 5.600749 AGGATTTCTTTCTACTACTCCCCA 58.399 41.667 0.00 0.00 0.00 4.96
1733 4237 6.213525 AGGATTTCTTTCTACTACTCCCCAT 58.786 40.000 0.00 0.00 0.00 4.00
1734 4238 7.371043 AGGATTTCTTTCTACTACTCCCCATA 58.629 38.462 0.00 0.00 0.00 2.74
1735 4239 7.511028 AGGATTTCTTTCTACTACTCCCCATAG 59.489 40.741 0.00 0.00 0.00 2.23
1736 4240 7.256368 GGATTTCTTTCTACTACTCCCCATAGG 60.256 44.444 0.00 0.00 0.00 2.57
1737 4241 6.351317 TTCTTTCTACTACTCCCCATAGGA 57.649 41.667 0.00 0.00 44.91 2.94
1738 4242 6.547396 TCTTTCTACTACTCCCCATAGGAT 57.453 41.667 0.00 0.00 46.33 3.24
1739 4243 6.935036 TCTTTCTACTACTCCCCATAGGATT 58.065 40.000 0.00 0.00 46.33 3.01
1740 4244 7.371043 TCTTTCTACTACTCCCCATAGGATTT 58.629 38.462 0.00 0.00 46.33 2.17
1741 4245 7.509659 TCTTTCTACTACTCCCCATAGGATTTC 59.490 40.741 0.00 0.00 46.33 2.17
1742 4246 6.547396 TCTACTACTCCCCATAGGATTTCT 57.453 41.667 0.00 0.00 46.33 2.52
1743 4247 7.658887 TCTACTACTCCCCATAGGATTTCTA 57.341 40.000 0.00 0.00 46.33 2.10
1744 4248 7.700846 TCTACTACTCCCCATAGGATTTCTAG 58.299 42.308 0.00 0.00 46.33 2.43
1745 4249 5.088026 ACTACTCCCCATAGGATTTCTAGC 58.912 45.833 0.00 0.00 46.33 3.42
1746 4250 3.941629 ACTCCCCATAGGATTTCTAGCA 58.058 45.455 0.00 0.00 46.33 3.49
1747 4251 4.507342 ACTCCCCATAGGATTTCTAGCAT 58.493 43.478 0.00 0.00 46.33 3.79
1748 4252 4.534103 ACTCCCCATAGGATTTCTAGCATC 59.466 45.833 0.00 0.00 46.33 3.91
1749 4253 3.846588 TCCCCATAGGATTTCTAGCATCC 59.153 47.826 11.24 11.24 40.93 3.51
1750 4254 3.588842 CCCCATAGGATTTCTAGCATCCA 59.411 47.826 18.29 8.52 42.63 3.41
1751 4255 4.566488 CCCCATAGGATTTCTAGCATCCAC 60.566 50.000 18.29 0.00 42.63 4.02
1752 4256 4.288105 CCCATAGGATTTCTAGCATCCACT 59.712 45.833 18.29 5.94 42.63 4.00
1753 4257 5.486526 CCATAGGATTTCTAGCATCCACTC 58.513 45.833 18.29 0.00 42.63 3.51
1754 4258 5.012458 CCATAGGATTTCTAGCATCCACTCA 59.988 44.000 18.29 5.66 42.63 3.41
1755 4259 6.464892 CCATAGGATTTCTAGCATCCACTCAA 60.465 42.308 18.29 4.13 42.63 3.02
1756 4260 5.441718 AGGATTTCTAGCATCCACTCAAA 57.558 39.130 18.29 0.00 42.63 2.69
1757 4261 5.189180 AGGATTTCTAGCATCCACTCAAAC 58.811 41.667 18.29 0.00 42.63 2.93
1758 4262 4.336713 GGATTTCTAGCATCCACTCAAACC 59.663 45.833 13.42 0.00 40.21 3.27
1759 4263 4.640771 TTTCTAGCATCCACTCAAACCT 57.359 40.909 0.00 0.00 0.00 3.50
1760 4264 3.895232 TCTAGCATCCACTCAAACCTC 57.105 47.619 0.00 0.00 0.00 3.85
1761 4265 3.445008 TCTAGCATCCACTCAAACCTCT 58.555 45.455 0.00 0.00 0.00 3.69
1762 4266 3.840666 TCTAGCATCCACTCAAACCTCTT 59.159 43.478 0.00 0.00 0.00 2.85
1763 4267 3.515602 AGCATCCACTCAAACCTCTTT 57.484 42.857 0.00 0.00 0.00 2.52
1764 4268 3.152341 AGCATCCACTCAAACCTCTTTG 58.848 45.455 0.00 0.00 38.56 2.77
1765 4269 3.149196 GCATCCACTCAAACCTCTTTGA 58.851 45.455 0.00 0.00 42.93 2.69
1766 4270 3.569701 GCATCCACTCAAACCTCTTTGAA 59.430 43.478 0.00 0.00 44.18 2.69
1767 4271 4.037923 GCATCCACTCAAACCTCTTTGAAA 59.962 41.667 0.00 0.00 44.18 2.69
1768 4272 5.766222 CATCCACTCAAACCTCTTTGAAAG 58.234 41.667 0.00 0.00 44.18 2.62
1769 4273 5.110814 TCCACTCAAACCTCTTTGAAAGA 57.889 39.130 7.49 7.49 44.18 2.52
1770 4274 5.505780 TCCACTCAAACCTCTTTGAAAGAA 58.494 37.500 9.15 0.00 44.18 2.52
1771 4275 6.129179 TCCACTCAAACCTCTTTGAAAGAAT 58.871 36.000 9.15 0.00 44.18 2.40
1772 4276 6.263168 TCCACTCAAACCTCTTTGAAAGAATC 59.737 38.462 9.15 0.00 44.18 2.52
1773 4277 6.264067 CCACTCAAACCTCTTTGAAAGAATCT 59.736 38.462 9.15 0.00 44.18 2.40
1774 4278 7.201857 CCACTCAAACCTCTTTGAAAGAATCTT 60.202 37.037 9.15 0.00 44.18 2.40
1775 4279 7.859875 CACTCAAACCTCTTTGAAAGAATCTTC 59.140 37.037 9.15 0.00 44.18 2.87
1776 4280 7.777440 ACTCAAACCTCTTTGAAAGAATCTTCT 59.223 33.333 9.15 0.00 44.18 2.85
1777 4281 8.525290 TCAAACCTCTTTGAAAGAATCTTCTT 57.475 30.769 9.15 0.00 42.34 2.52
1808 4312 5.747951 GATGCAATCAAACAACCCAAAAA 57.252 34.783 0.00 0.00 44.70 1.94
1849 4353 0.397941 TTGTGAAGGGAGGCTGACAG 59.602 55.000 0.00 0.00 0.00 3.51
1885 4434 6.656693 AGTTAGAACTGATCCATTTGGTGAAG 59.343 38.462 0.00 0.00 37.98 3.02
1908 4457 3.171528 TGGGGCATTTTGATGACATTGA 58.828 40.909 0.00 0.00 0.00 2.57
1924 4474 1.741028 TTGAGACTTGTGGGATGGGA 58.259 50.000 0.00 0.00 0.00 4.37
1967 4517 4.665833 ATTGAGATGAATGTGGCCATTG 57.334 40.909 9.72 0.00 41.37 2.82
1977 4527 1.530419 TGGCCATTGCTTGTTCCGT 60.530 52.632 0.00 0.00 37.74 4.69
1979 4529 1.102978 GGCCATTGCTTGTTCCGTAT 58.897 50.000 0.00 0.00 37.74 3.06
1984 4539 1.598882 TTGCTTGTTCCGTATGTGCA 58.401 45.000 0.00 0.00 0.00 4.57
1989 4544 1.424403 TGTTCCGTATGTGCAGAACG 58.576 50.000 9.02 8.58 41.17 3.95
1990 4545 1.269883 TGTTCCGTATGTGCAGAACGT 60.270 47.619 12.69 0.00 41.17 3.99
1994 4549 1.999735 CCGTATGTGCAGAACGTTGAT 59.000 47.619 5.00 0.00 34.90 2.57
1995 4550 2.415168 CCGTATGTGCAGAACGTTGATT 59.585 45.455 5.00 0.00 34.90 2.57
1996 4551 3.615056 CCGTATGTGCAGAACGTTGATTA 59.385 43.478 5.00 0.00 34.90 1.75
1997 4552 4.270084 CCGTATGTGCAGAACGTTGATTAT 59.730 41.667 5.00 0.00 34.90 1.28
1998 4553 5.460748 CCGTATGTGCAGAACGTTGATTATA 59.539 40.000 5.00 0.00 34.90 0.98
1999 4554 6.145534 CCGTATGTGCAGAACGTTGATTATAT 59.854 38.462 5.00 0.00 34.90 0.86
2002 4557 9.958285 GTATGTGCAGAACGTTGATTATATATG 57.042 33.333 5.00 0.00 0.00 1.78
2003 4558 8.607441 ATGTGCAGAACGTTGATTATATATGT 57.393 30.769 5.00 0.00 0.00 2.29
2004 4559 7.850501 TGTGCAGAACGTTGATTATATATGTG 58.149 34.615 5.00 0.00 0.00 3.21
2005 4560 6.792250 GTGCAGAACGTTGATTATATATGTGC 59.208 38.462 5.00 0.00 0.00 4.57
2006 4561 6.481644 TGCAGAACGTTGATTATATATGTGCA 59.518 34.615 5.00 0.73 0.00 4.57
2007 4562 7.011773 GCAGAACGTTGATTATATATGTGCAG 58.988 38.462 5.00 0.00 0.00 4.41
2008 4563 7.095649 GCAGAACGTTGATTATATATGTGCAGA 60.096 37.037 5.00 0.00 0.00 4.26
2009 4564 8.764287 CAGAACGTTGATTATATATGTGCAGAA 58.236 33.333 5.00 0.00 0.00 3.02
2010 4565 8.765219 AGAACGTTGATTATATATGTGCAGAAC 58.235 33.333 5.00 0.00 0.00 3.01
2011 4566 8.432110 AACGTTGATTATATATGTGCAGAACA 57.568 30.769 0.00 0.00 44.79 3.18
2060 4617 5.452302 GCATAAACTGCGCTGTAATTTGTAG 59.548 40.000 20.76 1.08 41.97 2.74
2064 4779 3.611113 ACTGCGCTGTAATTTGTAGTACG 59.389 43.478 19.08 0.00 0.00 3.67
2081 4796 5.324784 AGTACGATGCTTATGTTGTCTCA 57.675 39.130 0.00 0.00 0.00 3.27
2087 4802 5.448225 CGATGCTTATGTTGTCTCAGCAAAT 60.448 40.000 0.00 0.00 34.42 2.32
2132 4847 8.924511 AGTGTCATTTCCTTGATTTCTTTAGA 57.075 30.769 0.00 0.00 0.00 2.10
2224 4943 6.769822 CACTTTCTGGCCTGAATATTATCACT 59.230 38.462 23.90 0.00 0.00 3.41
2228 4947 6.769512 TCTGGCCTGAATATTATCACTAACC 58.230 40.000 10.32 0.00 0.00 2.85
2235 4954 7.273598 CCTGAATATTATCACTAACCATCGTCG 59.726 40.741 0.00 0.00 0.00 5.12
2272 4991 4.676723 GCAAAAGCAAACACCTGTTCACTA 60.677 41.667 0.00 0.00 37.25 2.74
2290 5009 7.827819 TTCACTAGAACTCCATATTCAAACG 57.172 36.000 0.00 0.00 0.00 3.60
2347 5069 4.897076 ACACCATGATCACCATTAATGCAT 59.103 37.500 10.11 4.97 31.94 3.96
2398 5120 3.764885 ATGCGTTTTCCTGTAATCTGC 57.235 42.857 0.00 0.00 0.00 4.26
2403 5125 4.923281 GCGTTTTCCTGTAATCTGCATTTT 59.077 37.500 0.00 0.00 0.00 1.82
2409 5131 6.500684 TCCTGTAATCTGCATTTTTGTCTC 57.499 37.500 0.00 0.00 0.00 3.36
2411 5133 5.295431 TGTAATCTGCATTTTTGTCTCCG 57.705 39.130 0.00 0.00 0.00 4.63
2499 5224 5.303078 GGGTGCATCTCTAGATCTTCAGTTA 59.697 44.000 0.00 0.00 31.21 2.24
2527 5253 9.995003 ATTCCAATTTTAAAACTCAATGTGCTA 57.005 25.926 1.97 0.00 0.00 3.49
2625 6245 0.244178 GTCAGGTTCTCTCGGTGGTC 59.756 60.000 0.00 0.00 0.00 4.02
2706 6326 5.189736 ACCTTTGGAGTCTTATGCTGACATA 59.810 40.000 0.00 0.00 37.74 2.29
2870 6490 5.454736 CTTGCAAAGGTTTGTGTCTTTTC 57.545 39.130 0.00 0.00 41.27 2.29
2874 6494 5.105392 TGCAAAGGTTTGTGTCTTTTCATCT 60.105 36.000 4.45 0.00 40.24 2.90
2878 6498 8.720562 CAAAGGTTTGTGTCTTTTCATCTTTTT 58.279 29.630 0.00 0.00 31.60 1.94
2907 6527 5.491070 GGCAAGGATTCCTTATTTTGCTTT 58.509 37.500 17.54 0.00 42.67 3.51
2964 6584 6.785337 AACCAGCTAAAAGGTTGTTAGTTT 57.215 33.333 5.44 0.00 45.91 2.66
2965 6585 7.885009 AACCAGCTAAAAGGTTGTTAGTTTA 57.115 32.000 5.44 0.00 45.91 2.01
2966 6586 8.473358 AACCAGCTAAAAGGTTGTTAGTTTAT 57.527 30.769 5.44 0.00 45.91 1.40
2967 6587 7.882179 ACCAGCTAAAAGGTTGTTAGTTTATG 58.118 34.615 0.00 0.00 33.39 1.90
2969 6589 8.357402 CCAGCTAAAAGGTTGTTAGTTTATGTT 58.643 33.333 0.00 0.00 32.21 2.71
3001 6621 9.726438 AATTGTAGCATGTTATTATACTCCCTC 57.274 33.333 0.00 0.00 0.00 4.30
3002 6622 7.241042 TGTAGCATGTTATTATACTCCCTCC 57.759 40.000 0.00 0.00 0.00 4.30
3003 6623 5.407407 AGCATGTTATTATACTCCCTCCG 57.593 43.478 0.00 0.00 0.00 4.63
3004 6624 4.838986 AGCATGTTATTATACTCCCTCCGT 59.161 41.667 0.00 0.00 0.00 4.69
3005 6625 5.307196 AGCATGTTATTATACTCCCTCCGTT 59.693 40.000 0.00 0.00 0.00 4.44
3006 6626 5.638234 GCATGTTATTATACTCCCTCCGTTC 59.362 44.000 0.00 0.00 0.00 3.95
3007 6627 5.796424 TGTTATTATACTCCCTCCGTTCC 57.204 43.478 0.00 0.00 0.00 3.62
3008 6628 5.461327 TGTTATTATACTCCCTCCGTTCCT 58.539 41.667 0.00 0.00 0.00 3.36
3009 6629 6.613699 TGTTATTATACTCCCTCCGTTCCTA 58.386 40.000 0.00 0.00 0.00 2.94
3010 6630 7.068702 TGTTATTATACTCCCTCCGTTCCTAA 58.931 38.462 0.00 0.00 0.00 2.69
3011 6631 7.564660 TGTTATTATACTCCCTCCGTTCCTAAA 59.435 37.037 0.00 0.00 0.00 1.85
3012 6632 8.591940 GTTATTATACTCCCTCCGTTCCTAAAT 58.408 37.037 0.00 0.00 0.00 1.40
3013 6633 9.827198 TTATTATACTCCCTCCGTTCCTAAATA 57.173 33.333 0.00 0.00 0.00 1.40
3014 6634 8.912614 ATTATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
3015 6635 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
3016 6636 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3017 6637 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3018 6638 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3019 6639 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3020 6640 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3021 6641 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3022 6642 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3023 6643 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3024 6644 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3041 6661 9.787532 TTGTCTTTTTAGAGATTTCAACAAGTG 57.212 29.630 0.00 0.00 0.00 3.16
3042 6662 9.173021 TGTCTTTTTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
3043 6663 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
3044 6664 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
3047 6667 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
3048 6668 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
3050 6670 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3051 6671 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3052 6672 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3053 6673 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3054 6674 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3055 6675 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3056 6676 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3057 6677 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3058 6678 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3059 6679 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3060 6680 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3061 6681 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3062 6682 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3063 6683 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3064 6684 4.442706 ACTACATACGGAGCAAAATGAGG 58.557 43.478 0.00 0.00 0.00 3.86
3065 6685 2.643551 ACATACGGAGCAAAATGAGGG 58.356 47.619 0.00 0.00 0.00 4.30
3066 6686 2.238646 ACATACGGAGCAAAATGAGGGA 59.761 45.455 0.00 0.00 0.00 4.20
3067 6687 3.278574 CATACGGAGCAAAATGAGGGAA 58.721 45.455 0.00 0.00 0.00 3.97
3068 6688 2.514458 ACGGAGCAAAATGAGGGAAT 57.486 45.000 0.00 0.00 0.00 3.01
3069 6689 2.369394 ACGGAGCAAAATGAGGGAATC 58.631 47.619 0.00 0.00 0.00 2.52
3070 6690 2.025887 ACGGAGCAAAATGAGGGAATCT 60.026 45.455 0.00 0.00 0.00 2.40
3071 6691 3.199946 ACGGAGCAAAATGAGGGAATCTA 59.800 43.478 0.00 0.00 0.00 1.98
3072 6692 3.561725 CGGAGCAAAATGAGGGAATCTAC 59.438 47.826 0.00 0.00 0.00 2.59
3073 6693 4.526970 GGAGCAAAATGAGGGAATCTACA 58.473 43.478 0.00 0.00 0.00 2.74
3074 6694 4.336713 GGAGCAAAATGAGGGAATCTACAC 59.663 45.833 0.00 0.00 0.00 2.90
3075 6695 5.184892 AGCAAAATGAGGGAATCTACACT 57.815 39.130 0.00 0.00 0.00 3.55
3076 6696 5.189180 AGCAAAATGAGGGAATCTACACTC 58.811 41.667 0.00 0.00 40.36 3.51
3077 6697 5.045286 AGCAAAATGAGGGAATCTACACTCT 60.045 40.000 0.00 0.00 40.56 3.24
3078 6698 6.156949 AGCAAAATGAGGGAATCTACACTCTA 59.843 38.462 0.00 0.00 40.56 2.43
3079 6699 6.823689 GCAAAATGAGGGAATCTACACTCTAA 59.176 38.462 0.00 0.00 40.56 2.10
3080 6700 7.336931 GCAAAATGAGGGAATCTACACTCTAAA 59.663 37.037 0.00 0.00 40.56 1.85
3081 6701 9.231297 CAAAATGAGGGAATCTACACTCTAAAA 57.769 33.333 0.00 0.00 40.56 1.52
3082 6702 9.981460 AAAATGAGGGAATCTACACTCTAAAAT 57.019 29.630 0.00 0.00 40.56 1.82
3086 6706 9.213777 TGAGGGAATCTACACTCTAAAATATGT 57.786 33.333 0.00 0.00 40.56 2.29
3087 6707 9.699703 GAGGGAATCTACACTCTAAAATATGTC 57.300 37.037 0.00 0.00 37.35 3.06
3088 6708 9.440761 AGGGAATCTACACTCTAAAATATGTCT 57.559 33.333 0.00 0.00 0.00 3.41
3112 6732 4.806330 CATACATCCGTATGTGGTAGTCC 58.194 47.826 3.56 0.00 46.70 3.85
3113 6733 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3114 6734 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3115 6735 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3116 6736 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3117 6737 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3118 6738 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3119 6739 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3120 6740 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3121 6741 5.163794 CCGTATGTGGTAGTCCATTTGAAAC 60.164 44.000 0.00 0.00 46.20 2.78
3122 6742 5.163794 CGTATGTGGTAGTCCATTTGAAACC 60.164 44.000 0.00 0.00 46.20 3.27
3123 6743 4.447138 TGTGGTAGTCCATTTGAAACCT 57.553 40.909 0.00 0.00 46.20 3.50
3124 6744 4.394729 TGTGGTAGTCCATTTGAAACCTC 58.605 43.478 0.00 0.00 46.20 3.85
3125 6745 4.104102 TGTGGTAGTCCATTTGAAACCTCT 59.896 41.667 0.00 0.00 46.20 3.69
3126 6746 5.308497 TGTGGTAGTCCATTTGAAACCTCTA 59.692 40.000 0.00 0.00 46.20 2.43
3127 6747 6.183361 TGTGGTAGTCCATTTGAAACCTCTAA 60.183 38.462 0.00 0.00 46.20 2.10
3128 6748 6.713450 GTGGTAGTCCATTTGAAACCTCTAAA 59.287 38.462 0.00 0.00 46.20 1.85
3129 6749 7.229907 GTGGTAGTCCATTTGAAACCTCTAAAA 59.770 37.037 0.00 0.00 46.20 1.52
3130 6750 7.780745 TGGTAGTCCATTTGAAACCTCTAAAAA 59.219 33.333 0.00 0.00 39.03 1.94
3131 6751 8.297426 GGTAGTCCATTTGAAACCTCTAAAAAG 58.703 37.037 0.00 0.00 31.46 2.27
3132 6752 9.063615 GTAGTCCATTTGAAACCTCTAAAAAGA 57.936 33.333 0.00 0.00 0.00 2.52
3133 6753 7.941919 AGTCCATTTGAAACCTCTAAAAAGAC 58.058 34.615 0.00 0.00 0.00 3.01
3134 6754 7.559897 AGTCCATTTGAAACCTCTAAAAAGACA 59.440 33.333 0.00 0.00 0.00 3.41
3135 6755 8.194769 GTCCATTTGAAACCTCTAAAAAGACAA 58.805 33.333 0.00 0.00 0.00 3.18
3136 6756 8.754080 TCCATTTGAAACCTCTAAAAAGACAAA 58.246 29.630 0.00 0.00 0.00 2.83
3137 6757 9.546428 CCATTTGAAACCTCTAAAAAGACAAAT 57.454 29.630 0.00 0.00 36.38 2.32
3152 6772 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3153 6773 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3154 6774 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3155 6775 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3260 7004 1.941812 CGTGTTGTTGGGAGTGAGC 59.058 57.895 0.00 0.00 0.00 4.26
3395 7140 7.838771 ACAAAGAGGTAAAATATACCACGTC 57.161 36.000 7.35 0.00 39.99 4.34
3397 7142 7.763071 ACAAAGAGGTAAAATATACCACGTCTC 59.237 37.037 7.35 0.00 39.99 3.36
3476 7225 4.824537 TCCCGTGAAAAATGAGTTGAATCA 59.175 37.500 0.00 0.00 0.00 2.57
4021 7809 5.822519 GCTAACTATGAATTGTGACATGGGA 59.177 40.000 0.00 0.00 31.07 4.37
4109 7902 8.793592 GGGTTGTCTTTCTATTGTCTTATGTTT 58.206 33.333 0.00 0.00 0.00 2.83
4442 8300 6.060136 GGTTGGAGTTTTACTTTCCTGTACT 58.940 40.000 0.00 0.00 32.12 2.73
4617 8481 2.086869 CCTGATGGCGTGAAATGAACT 58.913 47.619 0.00 0.00 0.00 3.01
4618 8482 3.055458 TCCTGATGGCGTGAAATGAACTA 60.055 43.478 0.00 0.00 0.00 2.24
4619 8483 3.063997 CCTGATGGCGTGAAATGAACTAC 59.936 47.826 0.00 0.00 0.00 2.73
4620 8484 3.935203 CTGATGGCGTGAAATGAACTACT 59.065 43.478 0.00 0.00 0.00 2.57
4621 8485 3.932710 TGATGGCGTGAAATGAACTACTC 59.067 43.478 0.00 0.00 0.00 2.59
4622 8486 2.695359 TGGCGTGAAATGAACTACTCC 58.305 47.619 0.00 0.00 0.00 3.85
4623 8487 2.301870 TGGCGTGAAATGAACTACTCCT 59.698 45.455 0.00 0.00 0.00 3.69
4624 8488 2.930682 GGCGTGAAATGAACTACTCCTC 59.069 50.000 0.00 0.00 0.00 3.71
4625 8489 3.368531 GGCGTGAAATGAACTACTCCTCT 60.369 47.826 0.00 0.00 0.00 3.69
4626 8490 3.614616 GCGTGAAATGAACTACTCCTCTG 59.385 47.826 0.00 0.00 0.00 3.35
4627 8491 4.810790 CGTGAAATGAACTACTCCTCTGT 58.189 43.478 0.00 0.00 0.00 3.41
4628 8492 5.621555 GCGTGAAATGAACTACTCCTCTGTA 60.622 44.000 0.00 0.00 0.00 2.74
4629 8493 6.387465 CGTGAAATGAACTACTCCTCTGTAA 58.613 40.000 0.00 0.00 0.00 2.41
4630 8494 6.866770 CGTGAAATGAACTACTCCTCTGTAAA 59.133 38.462 0.00 0.00 0.00 2.01
4631 8495 7.148787 CGTGAAATGAACTACTCCTCTGTAAAC 60.149 40.741 0.00 0.00 0.00 2.01
4632 8496 7.873505 GTGAAATGAACTACTCCTCTGTAAACT 59.126 37.037 0.00 0.00 0.00 2.66
4633 8497 9.085645 TGAAATGAACTACTCCTCTGTAAACTA 57.914 33.333 0.00 0.00 0.00 2.24
4634 8498 9.924650 GAAATGAACTACTCCTCTGTAAACTAA 57.075 33.333 0.00 0.00 0.00 2.24
4644 8508 9.530633 ACTCCTCTGTAAACTAATATAAAAGCG 57.469 33.333 0.00 0.00 0.00 4.68
4645 8509 9.530633 CTCCTCTGTAAACTAATATAAAAGCGT 57.469 33.333 0.00 0.00 0.00 5.07
4646 8510 9.880157 TCCTCTGTAAACTAATATAAAAGCGTT 57.120 29.630 0.00 0.00 0.00 4.84
4663 8527 8.828688 AAAAGCGTTTAGATCACTACTTTAGT 57.171 30.769 0.00 0.00 40.28 2.24
4664 8528 9.918630 AAAAGCGTTTAGATCACTACTTTAGTA 57.081 29.630 0.00 0.00 37.23 1.82
4667 8531 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
4668 8532 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
4674 8538 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
4675 8539 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
4676 8540 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
4677 8541 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
4678 8542 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
4695 8559 8.658499 AACGCTCTTATTACATTAGTTTAGGG 57.342 34.615 0.00 0.00 0.00 3.53
4696 8560 8.015185 ACGCTCTTATTACATTAGTTTAGGGA 57.985 34.615 0.00 0.00 0.00 4.20
4697 8561 8.142551 ACGCTCTTATTACATTAGTTTAGGGAG 58.857 37.037 0.00 0.00 0.00 4.30
4698 8562 7.599245 CGCTCTTATTACATTAGTTTAGGGAGG 59.401 40.741 0.00 0.00 0.00 4.30
4699 8563 7.878644 GCTCTTATTACATTAGTTTAGGGAGGG 59.121 40.741 0.00 0.00 0.00 4.30
4700 8564 9.155785 CTCTTATTACATTAGTTTAGGGAGGGA 57.844 37.037 0.00 0.00 0.00 4.20
4701 8565 9.155785 TCTTATTACATTAGTTTAGGGAGGGAG 57.844 37.037 0.00 0.00 0.00 4.30
4942 8893 1.529244 GGAGCACAAACCACTGCCT 60.529 57.895 0.00 0.00 33.57 4.75
4991 8943 8.997323 GTTTGCTCAGAAACATATCATAGCTAT 58.003 33.333 0.00 0.00 36.11 2.97
5000 8952 8.978874 AAACATATCATAGCTATTTGTCCACA 57.021 30.769 2.64 0.00 0.00 4.17
5001 8953 8.978874 AACATATCATAGCTATTTGTCCACAA 57.021 30.769 2.64 0.00 0.00 3.33
5076 9028 2.125269 ACGCCGATAACTGCCACC 60.125 61.111 0.00 0.00 0.00 4.61
5305 9259 2.732016 CCCGCGGGATGACGATTA 59.268 61.111 41.82 0.00 37.50 1.75
5320 9274 3.631250 ACGATTAAATTGCCATCCTGGT 58.369 40.909 0.00 0.00 40.46 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.601243 ACTTTGATCAAATTTTATACGCGAAG 57.399 30.769 20.76 6.87 0.00 3.79
3 4 8.231161 TGACTTTGATCAAATTTTATACGCGAA 58.769 29.630 20.76 0.00 0.00 4.70
4 5 7.744059 TGACTTTGATCAAATTTTATACGCGA 58.256 30.769 20.76 0.00 0.00 5.87
5 6 7.946918 TGACTTTGATCAAATTTTATACGCG 57.053 32.000 20.76 3.53 0.00 6.01
16 17 8.519526 ACTTTGTGTAGTTTGACTTTGATCAAA 58.480 29.630 19.45 19.45 44.40 2.69
17 18 8.050778 ACTTTGTGTAGTTTGACTTTGATCAA 57.949 30.769 3.38 3.38 36.80 2.57
18 19 7.624360 ACTTTGTGTAGTTTGACTTTGATCA 57.376 32.000 0.00 0.00 0.00 2.92
19 20 8.911247 AAACTTTGTGTAGTTTGACTTTGATC 57.089 30.769 0.00 0.00 44.42 2.92
100 101 7.259882 TCAGATGCACCATGAAATGTATTTTC 58.740 34.615 0.00 0.00 44.81 2.29
101 102 7.172868 TCAGATGCACCATGAAATGTATTTT 57.827 32.000 0.00 0.00 44.81 1.82
102 103 6.778834 TCAGATGCACCATGAAATGTATTT 57.221 33.333 0.00 0.00 44.81 1.40
103 104 6.971726 ATCAGATGCACCATGAAATGTATT 57.028 33.333 0.00 0.00 44.81 1.89
104 105 8.645814 ATTATCAGATGCACCATGAAATGTAT 57.354 30.769 0.00 0.00 44.81 2.29
105 106 9.743581 ATATTATCAGATGCACCATGAAATGTA 57.256 29.630 0.00 0.00 44.81 2.29
106 107 6.971726 ATTATCAGATGCACCATGAAATGT 57.028 33.333 0.00 0.00 44.81 2.71
107 108 9.353999 CAATATTATCAGATGCACCATGAAATG 57.646 33.333 0.00 0.00 46.21 2.32
108 109 9.304335 TCAATATTATCAGATGCACCATGAAAT 57.696 29.630 0.00 0.41 0.00 2.17
109 110 8.694581 TCAATATTATCAGATGCACCATGAAA 57.305 30.769 0.00 0.00 0.00 2.69
110 111 8.873186 ATCAATATTATCAGATGCACCATGAA 57.127 30.769 0.00 0.00 0.00 2.57
111 112 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
112 113 9.569167 GAAATCAATATTATCAGATGCACCATG 57.431 33.333 0.00 0.00 0.00 3.66
113 114 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
114 115 8.570488 GTGAAATCAATATTATCAGATGCACCA 58.430 33.333 0.00 0.00 0.00 4.17
115 116 8.570488 TGTGAAATCAATATTATCAGATGCACC 58.430 33.333 0.00 0.00 31.30 5.01
182 183 9.921637 GGTTTGGTCAAAGTCATGATTTATAAA 57.078 29.630 3.63 0.00 0.00 1.40
183 184 9.308000 AGGTTTGGTCAAAGTCATGATTTATAA 57.692 29.630 3.63 0.00 0.00 0.98
184 185 8.877864 AGGTTTGGTCAAAGTCATGATTTATA 57.122 30.769 3.63 0.00 0.00 0.98
185 186 7.781324 AGGTTTGGTCAAAGTCATGATTTAT 57.219 32.000 3.63 0.00 0.00 1.40
186 187 7.595819 AAGGTTTGGTCAAAGTCATGATTTA 57.404 32.000 3.63 0.00 0.00 1.40
187 188 6.484364 AAGGTTTGGTCAAAGTCATGATTT 57.516 33.333 0.00 0.00 0.00 2.17
188 189 7.781324 ATAAGGTTTGGTCAAAGTCATGATT 57.219 32.000 0.00 0.00 0.00 2.57
189 190 8.906867 CATATAAGGTTTGGTCAAAGTCATGAT 58.093 33.333 0.00 0.00 0.00 2.45
190 191 7.148086 GCATATAAGGTTTGGTCAAAGTCATGA 60.148 37.037 0.00 0.00 0.00 3.07
191 192 6.974622 GCATATAAGGTTTGGTCAAAGTCATG 59.025 38.462 0.00 0.00 0.00 3.07
192 193 6.663093 TGCATATAAGGTTTGGTCAAAGTCAT 59.337 34.615 0.00 0.00 0.00 3.06
193 194 6.007076 TGCATATAAGGTTTGGTCAAAGTCA 58.993 36.000 0.00 0.00 0.00 3.41
194 195 6.374333 TCTGCATATAAGGTTTGGTCAAAGTC 59.626 38.462 0.00 0.00 0.00 3.01
195 196 6.151144 GTCTGCATATAAGGTTTGGTCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
196 197 6.375455 AGTCTGCATATAAGGTTTGGTCAAAG 59.625 38.462 0.00 0.00 0.00 2.77
197 198 6.245408 AGTCTGCATATAAGGTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
198 199 5.815581 AGTCTGCATATAAGGTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
199 200 5.435686 AGTCTGCATATAAGGTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
200 201 6.346096 TGTAGTCTGCATATAAGGTTTGGTC 58.654 40.000 0.00 0.00 0.00 4.02
201 202 6.308015 TGTAGTCTGCATATAAGGTTTGGT 57.692 37.500 0.00 0.00 0.00 3.67
202 203 7.552687 TCTTTGTAGTCTGCATATAAGGTTTGG 59.447 37.037 0.00 0.00 0.00 3.28
203 204 8.492673 TCTTTGTAGTCTGCATATAAGGTTTG 57.507 34.615 0.00 0.00 0.00 2.93
204 205 9.515226 TTTCTTTGTAGTCTGCATATAAGGTTT 57.485 29.630 0.00 0.00 0.00 3.27
205 206 8.947115 GTTTCTTTGTAGTCTGCATATAAGGTT 58.053 33.333 0.00 0.00 0.00 3.50
206 207 8.100791 TGTTTCTTTGTAGTCTGCATATAAGGT 58.899 33.333 0.00 0.00 0.00 3.50
207 208 8.492673 TGTTTCTTTGTAGTCTGCATATAAGG 57.507 34.615 0.00 0.00 0.00 2.69
208 209 9.371136 TCTGTTTCTTTGTAGTCTGCATATAAG 57.629 33.333 0.00 0.00 0.00 1.73
209 210 9.371136 CTCTGTTTCTTTGTAGTCTGCATATAA 57.629 33.333 0.00 0.00 0.00 0.98
210 211 7.981789 CCTCTGTTTCTTTGTAGTCTGCATATA 59.018 37.037 0.00 0.00 0.00 0.86
211 212 6.820656 CCTCTGTTTCTTTGTAGTCTGCATAT 59.179 38.462 0.00 0.00 0.00 1.78
212 213 6.166279 CCTCTGTTTCTTTGTAGTCTGCATA 58.834 40.000 0.00 0.00 0.00 3.14
213 214 4.999950 CCTCTGTTTCTTTGTAGTCTGCAT 59.000 41.667 0.00 0.00 0.00 3.96
214 215 4.380531 CCTCTGTTTCTTTGTAGTCTGCA 58.619 43.478 0.00 0.00 0.00 4.41
215 216 3.748568 CCCTCTGTTTCTTTGTAGTCTGC 59.251 47.826 0.00 0.00 0.00 4.26
216 217 5.215252 TCCCTCTGTTTCTTTGTAGTCTG 57.785 43.478 0.00 0.00 0.00 3.51
217 218 4.902448 ACTCCCTCTGTTTCTTTGTAGTCT 59.098 41.667 0.00 0.00 0.00 3.24
218 219 5.216614 ACTCCCTCTGTTTCTTTGTAGTC 57.783 43.478 0.00 0.00 0.00 2.59
219 220 5.839606 AGTACTCCCTCTGTTTCTTTGTAGT 59.160 40.000 0.00 0.00 0.00 2.73
220 221 6.347859 AGTACTCCCTCTGTTTCTTTGTAG 57.652 41.667 0.00 0.00 0.00 2.74
221 222 7.672660 TCATAGTACTCCCTCTGTTTCTTTGTA 59.327 37.037 0.00 0.00 0.00 2.41
222 223 6.497259 TCATAGTACTCCCTCTGTTTCTTTGT 59.503 38.462 0.00 0.00 0.00 2.83
223 224 6.936279 TCATAGTACTCCCTCTGTTTCTTTG 58.064 40.000 0.00 0.00 0.00 2.77
224 225 7.554959 TTCATAGTACTCCCTCTGTTTCTTT 57.445 36.000 0.00 0.00 0.00 2.52
225 226 7.554959 TTTCATAGTACTCCCTCTGTTTCTT 57.445 36.000 0.00 0.00 0.00 2.52
226 227 7.455008 TCTTTTCATAGTACTCCCTCTGTTTCT 59.545 37.037 0.00 0.00 0.00 2.52
227 228 7.612677 TCTTTTCATAGTACTCCCTCTGTTTC 58.387 38.462 0.00 0.00 0.00 2.78
228 229 7.310734 CCTCTTTTCATAGTACTCCCTCTGTTT 60.311 40.741 0.00 0.00 0.00 2.83
229 230 6.155393 CCTCTTTTCATAGTACTCCCTCTGTT 59.845 42.308 0.00 0.00 0.00 3.16
230 231 5.659079 CCTCTTTTCATAGTACTCCCTCTGT 59.341 44.000 0.00 0.00 0.00 3.41
231 232 5.659079 ACCTCTTTTCATAGTACTCCCTCTG 59.341 44.000 0.00 0.00 0.00 3.35
232 233 5.659079 CACCTCTTTTCATAGTACTCCCTCT 59.341 44.000 0.00 0.00 0.00 3.69
233 234 5.163395 CCACCTCTTTTCATAGTACTCCCTC 60.163 48.000 0.00 0.00 0.00 4.30
234 235 4.717280 CCACCTCTTTTCATAGTACTCCCT 59.283 45.833 0.00 0.00 0.00 4.20
235 236 4.715297 TCCACCTCTTTTCATAGTACTCCC 59.285 45.833 0.00 0.00 0.00 4.30
236 237 5.934402 TCCACCTCTTTTCATAGTACTCC 57.066 43.478 0.00 0.00 0.00 3.85
237 238 6.098409 TCCATCCACCTCTTTTCATAGTACTC 59.902 42.308 0.00 0.00 0.00 2.59
238 239 5.964477 TCCATCCACCTCTTTTCATAGTACT 59.036 40.000 0.00 0.00 0.00 2.73
239 240 6.235231 TCCATCCACCTCTTTTCATAGTAC 57.765 41.667 0.00 0.00 0.00 2.73
272 273 7.015389 CCACATTAAGTTTTACAAACCCCCTTA 59.985 37.037 0.00 0.00 0.00 2.69
334 335 2.668212 CCTCAAAACAGCGCCGGA 60.668 61.111 5.05 0.00 0.00 5.14
357 358 4.004982 CCCCTGCAATGAATTTTCCTTTG 58.995 43.478 0.00 0.00 0.00 2.77
404 408 1.413767 CTTCCGCCGTCAGAACATCG 61.414 60.000 0.00 0.00 0.00 3.84
819 3146 5.007528 CGTACTTGGCTAGGAGTAGTACTTC 59.992 48.000 0.00 1.69 39.17 3.01
821 3148 4.080638 ACGTACTTGGCTAGGAGTAGTACT 60.081 45.833 1.37 1.37 39.17 2.73
822 3149 4.195416 ACGTACTTGGCTAGGAGTAGTAC 58.805 47.826 0.20 0.00 38.38 2.73
823 3150 4.494091 ACGTACTTGGCTAGGAGTAGTA 57.506 45.455 0.20 0.00 0.00 1.82
824 3151 3.362870 ACGTACTTGGCTAGGAGTAGT 57.637 47.619 0.20 0.00 0.00 2.73
825 3152 3.814283 CCTACGTACTTGGCTAGGAGTAG 59.186 52.174 15.08 15.08 33.19 2.57
879 3206 9.674824 CCGATATATAGTTTTCTCGTTGTACTT 57.325 33.333 0.00 0.00 0.00 2.24
880 3207 8.844244 ACCGATATATAGTTTTCTCGTTGTACT 58.156 33.333 0.00 0.00 0.00 2.73
881 3208 9.111702 GACCGATATATAGTTTTCTCGTTGTAC 57.888 37.037 0.00 0.00 0.00 2.90
927 3254 2.430332 AGAGAGAGATCGGGCTTTCTTG 59.570 50.000 0.00 0.00 30.34 3.02
947 3274 0.038310 GGGTTTGGGTTGGGAGAGAG 59.962 60.000 0.00 0.00 0.00 3.20
1377 3707 3.114647 GATCGCGTGGCTCTCGTCT 62.115 63.158 5.77 0.00 0.00 4.18
1523 3853 6.566079 TCTAATCCATGTTTGAGTCCATCT 57.434 37.500 0.00 0.00 0.00 2.90
1564 4047 0.806492 CTCGCCCTAGGTTTTCTCGC 60.806 60.000 8.29 0.62 0.00 5.03
1607 4111 9.591792 CTCCAAAATTCCTATGAAAATCCTTTC 57.408 33.333 0.00 0.00 41.25 2.62
1609 4113 7.900784 TCCTCCAAAATTCCTATGAAAATCCTT 59.099 33.333 0.00 0.00 33.32 3.36
1652 4156 7.177568 TGAATCGAACATCCCAAATAGGAAAAA 59.822 33.333 0.00 0.00 40.04 1.94
1653 4157 6.661377 TGAATCGAACATCCCAAATAGGAAAA 59.339 34.615 0.00 0.00 40.04 2.29
1654 4158 6.184068 TGAATCGAACATCCCAAATAGGAAA 58.816 36.000 0.00 0.00 40.04 3.13
1655 4159 5.750524 TGAATCGAACATCCCAAATAGGAA 58.249 37.500 0.00 0.00 40.04 3.36
1656 4160 5.366482 TGAATCGAACATCCCAAATAGGA 57.634 39.130 0.00 0.00 41.22 2.94
1657 4161 7.928307 ATATGAATCGAACATCCCAAATAGG 57.072 36.000 10.85 0.00 37.03 2.57
1661 4165 9.348476 TCAATAATATGAATCGAACATCCCAAA 57.652 29.630 10.85 0.00 0.00 3.28
1662 4166 8.916628 TCAATAATATGAATCGAACATCCCAA 57.083 30.769 10.85 0.00 0.00 4.12
1663 4167 8.916628 TTCAATAATATGAATCGAACATCCCA 57.083 30.769 10.85 0.00 34.50 4.37
1694 4198 9.996554 GAAAGAAATCCTTAGGAAAAATTCCAA 57.003 29.630 4.56 3.63 42.62 3.53
1695 4199 9.379770 AGAAAGAAATCCTTAGGAAAAATTCCA 57.620 29.630 4.56 0.00 42.62 3.53
1703 4207 8.979534 GGAGTAGTAGAAAGAAATCCTTAGGAA 58.020 37.037 4.56 0.00 34.34 3.36
1704 4208 7.564292 GGGAGTAGTAGAAAGAAATCCTTAGGA 59.436 40.741 2.37 2.37 34.00 2.94
1705 4209 7.202020 GGGGAGTAGTAGAAAGAAATCCTTAGG 60.202 44.444 0.00 0.00 34.00 2.69
1706 4210 7.344871 TGGGGAGTAGTAGAAAGAAATCCTTAG 59.655 40.741 0.00 0.00 34.00 2.18
1707 4211 7.194050 TGGGGAGTAGTAGAAAGAAATCCTTA 58.806 38.462 0.00 0.00 34.00 2.69
1708 4212 6.030082 TGGGGAGTAGTAGAAAGAAATCCTT 58.970 40.000 0.00 0.00 36.47 3.36
1709 4213 5.600749 TGGGGAGTAGTAGAAAGAAATCCT 58.399 41.667 0.00 0.00 0.00 3.24
1710 4214 5.952347 TGGGGAGTAGTAGAAAGAAATCC 57.048 43.478 0.00 0.00 0.00 3.01
1711 4215 7.509659 TCCTATGGGGAGTAGTAGAAAGAAATC 59.490 40.741 0.00 0.00 39.58 2.17
1712 4216 7.371043 TCCTATGGGGAGTAGTAGAAAGAAAT 58.629 38.462 0.00 0.00 39.58 2.17
1713 4217 6.748969 TCCTATGGGGAGTAGTAGAAAGAAA 58.251 40.000 0.00 0.00 39.58 2.52
1714 4218 6.351317 TCCTATGGGGAGTAGTAGAAAGAA 57.649 41.667 0.00 0.00 39.58 2.52
1728 4232 3.588842 TGGATGCTAGAAATCCTATGGGG 59.411 47.826 19.93 0.00 43.52 4.96
1729 4233 4.288105 AGTGGATGCTAGAAATCCTATGGG 59.712 45.833 19.93 0.00 43.52 4.00
1730 4234 5.012458 TGAGTGGATGCTAGAAATCCTATGG 59.988 44.000 19.93 0.00 43.52 2.74
1731 4235 6.106648 TGAGTGGATGCTAGAAATCCTATG 57.893 41.667 19.93 0.00 43.52 2.23
1732 4236 6.753913 TTGAGTGGATGCTAGAAATCCTAT 57.246 37.500 19.93 11.75 43.52 2.57
1733 4237 6.349300 GTTTGAGTGGATGCTAGAAATCCTA 58.651 40.000 19.93 8.67 43.52 2.94
1734 4238 5.189180 GTTTGAGTGGATGCTAGAAATCCT 58.811 41.667 19.93 6.45 43.52 3.24
1735 4239 4.336713 GGTTTGAGTGGATGCTAGAAATCC 59.663 45.833 14.93 14.93 43.44 3.01
1736 4240 5.189180 AGGTTTGAGTGGATGCTAGAAATC 58.811 41.667 0.00 0.00 0.00 2.17
1737 4241 5.045286 AGAGGTTTGAGTGGATGCTAGAAAT 60.045 40.000 0.00 0.00 0.00 2.17
1738 4242 4.287067 AGAGGTTTGAGTGGATGCTAGAAA 59.713 41.667 0.00 0.00 0.00 2.52
1739 4243 3.840666 AGAGGTTTGAGTGGATGCTAGAA 59.159 43.478 0.00 0.00 0.00 2.10
1740 4244 3.445008 AGAGGTTTGAGTGGATGCTAGA 58.555 45.455 0.00 0.00 0.00 2.43
1741 4245 3.902881 AGAGGTTTGAGTGGATGCTAG 57.097 47.619 0.00 0.00 0.00 3.42
1742 4246 4.041567 TCAAAGAGGTTTGAGTGGATGCTA 59.958 41.667 0.00 0.00 45.82 3.49
1743 4247 3.152341 CAAAGAGGTTTGAGTGGATGCT 58.848 45.455 0.00 0.00 45.22 3.79
1744 4248 3.149196 TCAAAGAGGTTTGAGTGGATGC 58.851 45.455 0.00 0.00 45.82 3.91
1751 4255 8.628280 AAGAAGATTCTTTCAAAGAGGTTTGAG 58.372 33.333 0.00 0.00 44.70 3.02
1752 4256 8.525290 AAGAAGATTCTTTCAAAGAGGTTTGA 57.475 30.769 0.00 0.00 44.70 2.69
1777 4281 7.416022 GGTTGTTTGATTGCATCATTGAAAAA 58.584 30.769 0.00 0.00 39.39 1.94
1778 4282 6.017275 GGGTTGTTTGATTGCATCATTGAAAA 60.017 34.615 0.00 0.00 39.39 2.29
1779 4283 5.469421 GGGTTGTTTGATTGCATCATTGAAA 59.531 36.000 0.00 0.00 39.39 2.69
1780 4284 4.996122 GGGTTGTTTGATTGCATCATTGAA 59.004 37.500 0.00 0.00 39.39 2.69
1781 4285 4.040095 TGGGTTGTTTGATTGCATCATTGA 59.960 37.500 0.00 0.00 39.39 2.57
1782 4286 4.316645 TGGGTTGTTTGATTGCATCATTG 58.683 39.130 0.00 0.00 39.39 2.82
1783 4287 4.620589 TGGGTTGTTTGATTGCATCATT 57.379 36.364 0.00 0.00 39.39 2.57
1784 4288 4.620589 TTGGGTTGTTTGATTGCATCAT 57.379 36.364 0.00 0.00 39.39 2.45
1785 4289 4.412796 TTTGGGTTGTTTGATTGCATCA 57.587 36.364 0.00 0.00 37.55 3.07
1786 4290 5.747951 TTTTTGGGTTGTTTGATTGCATC 57.252 34.783 0.00 0.00 0.00 3.91
1805 4309 5.556915 TGTCATCGTTCCTACAGGATTTTT 58.443 37.500 0.00 0.00 44.98 1.94
1806 4310 5.160607 TGTCATCGTTCCTACAGGATTTT 57.839 39.130 0.00 0.00 44.98 1.82
1807 4311 4.819105 TGTCATCGTTCCTACAGGATTT 57.181 40.909 0.00 0.00 44.98 2.17
1808 4312 5.359194 AATGTCATCGTTCCTACAGGATT 57.641 39.130 0.00 0.00 44.98 3.01
1809 4313 5.118990 CAAATGTCATCGTTCCTACAGGAT 58.881 41.667 0.00 0.00 44.98 3.24
1810 4314 4.020573 ACAAATGTCATCGTTCCTACAGGA 60.021 41.667 0.00 0.00 43.73 3.86
1811 4315 4.093408 CACAAATGTCATCGTTCCTACAGG 59.907 45.833 0.00 0.00 0.00 4.00
1812 4316 4.929211 TCACAAATGTCATCGTTCCTACAG 59.071 41.667 0.00 0.00 0.00 2.74
1813 4317 4.888917 TCACAAATGTCATCGTTCCTACA 58.111 39.130 0.00 0.00 0.00 2.74
1814 4318 5.163854 CCTTCACAAATGTCATCGTTCCTAC 60.164 44.000 0.00 0.00 0.00 3.18
1815 4319 4.935205 CCTTCACAAATGTCATCGTTCCTA 59.065 41.667 0.00 0.00 0.00 2.94
1816 4320 3.753272 CCTTCACAAATGTCATCGTTCCT 59.247 43.478 0.00 0.00 0.00 3.36
1817 4321 3.119849 CCCTTCACAAATGTCATCGTTCC 60.120 47.826 0.00 0.00 0.00 3.62
1818 4322 3.751175 TCCCTTCACAAATGTCATCGTTC 59.249 43.478 0.00 0.00 0.00 3.95
1819 4323 3.750371 TCCCTTCACAAATGTCATCGTT 58.250 40.909 0.00 0.00 0.00 3.85
1820 4324 3.338249 CTCCCTTCACAAATGTCATCGT 58.662 45.455 0.00 0.00 0.00 3.73
1849 4353 3.119459 TCAGTTCTAACTCACTCCGATGC 60.119 47.826 0.00 0.00 37.08 3.91
1885 4434 3.615224 ATGTCATCAAAATGCCCCAAC 57.385 42.857 0.00 0.00 32.58 3.77
1908 4457 1.566298 GGCTCCCATCCCACAAGTCT 61.566 60.000 0.00 0.00 0.00 3.24
1935 4485 7.101054 CACATTCATCTCAATTCCCATGTTTT 58.899 34.615 0.00 0.00 0.00 2.43
1967 4517 1.438651 TCTGCACATACGGAACAAGC 58.561 50.000 0.00 0.00 0.00 4.01
1977 4527 9.705290 ACATATATAATCAACGTTCTGCACATA 57.295 29.630 0.00 0.00 0.00 2.29
1979 4529 7.518211 GCACATATATAATCAACGTTCTGCACA 60.518 37.037 0.00 0.00 0.00 4.57
1984 4539 8.765219 GTTCTGCACATATATAATCAACGTTCT 58.235 33.333 0.00 0.00 0.00 3.01
2040 4597 5.389098 CGTACTACAAATTACAGCGCAGTTT 60.389 40.000 11.78 0.00 0.00 2.66
2050 4607 9.632969 CAACATAAGCATCGTACTACAAATTAC 57.367 33.333 0.00 0.00 0.00 1.89
2060 4617 4.026475 GCTGAGACAACATAAGCATCGTAC 60.026 45.833 0.00 0.00 34.01 3.67
2064 4779 4.952262 TTGCTGAGACAACATAAGCATC 57.048 40.909 0.00 0.00 42.97 3.91
2087 4802 7.761704 TGACACTTAGCAATAAAACAAAGCAAA 59.238 29.630 0.00 0.00 0.00 3.68
2099 4814 8.579850 AATCAAGGAAATGACACTTAGCAATA 57.420 30.769 0.00 0.00 30.82 1.90
2180 4895 8.938883 AGAAAGTGGTCAACATCATATATAGGT 58.061 33.333 0.00 0.00 0.00 3.08
2181 4896 9.212641 CAGAAAGTGGTCAACATCATATATAGG 57.787 37.037 0.00 0.00 0.00 2.57
2224 4943 3.915536 TGTCAATTGTCGACGATGGTTA 58.084 40.909 19.01 6.98 36.11 2.85
2228 4947 3.725356 CAACTGTCAATTGTCGACGATG 58.275 45.455 19.01 13.09 36.11 3.84
2235 4954 4.442350 GCTTTTGCAACTGTCAATTGTC 57.558 40.909 0.00 0.00 46.58 3.18
2272 4991 7.174253 TGCTTTAACGTTTGAATATGGAGTTCT 59.826 33.333 5.91 0.00 0.00 3.01
2322 5043 5.890419 TGCATTAATGGTGATCATGGTGTTA 59.110 36.000 17.02 0.00 35.99 2.41
2347 5069 8.939929 CAAAGAGAGATACTGCAAGAACATTAA 58.060 33.333 0.00 0.00 37.43 1.40
2352 5074 7.093992 ACTACAAAGAGAGATACTGCAAGAAC 58.906 38.462 0.00 0.00 37.43 3.01
2365 5087 5.869888 AGGAAAACGCATACTACAAAGAGAG 59.130 40.000 0.00 0.00 0.00 3.20
2398 5120 6.867662 ATATAAGAGCCGGAGACAAAAATG 57.132 37.500 5.05 0.00 0.00 2.32
2403 5125 5.871396 AAGAATATAAGAGCCGGAGACAA 57.129 39.130 5.05 0.00 0.00 3.18
2409 5131 4.273480 CCACACAAAGAATATAAGAGCCGG 59.727 45.833 0.00 0.00 0.00 6.13
2411 5133 6.759497 AACCACACAAAGAATATAAGAGCC 57.241 37.500 0.00 0.00 0.00 4.70
2465 5190 4.038271 AGAGATGCACCCATTGAAGAAA 57.962 40.909 0.00 0.00 0.00 2.52
2468 5193 4.412796 TCTAGAGATGCACCCATTGAAG 57.587 45.455 0.00 0.00 0.00 3.02
2469 5194 4.657504 AGATCTAGAGATGCACCCATTGAA 59.342 41.667 0.00 0.00 34.37 2.69
2470 5195 4.229639 AGATCTAGAGATGCACCCATTGA 58.770 43.478 0.00 0.00 34.37 2.57
2499 5224 8.558700 GCACATTGAGTTTTAAAATTGGAATGT 58.441 29.630 16.75 16.75 33.01 2.71
2516 5241 5.234972 TCTGTTCGCATAATAGCACATTGAG 59.765 40.000 0.00 0.00 0.00 3.02
2517 5242 5.115480 TCTGTTCGCATAATAGCACATTGA 58.885 37.500 0.00 0.00 0.00 2.57
2518 5243 5.408204 TCTGTTCGCATAATAGCACATTG 57.592 39.130 0.00 0.00 0.00 2.82
2519 5244 5.353956 TGTTCTGTTCGCATAATAGCACATT 59.646 36.000 0.00 0.00 0.00 2.71
2523 5249 6.435430 AATTGTTCTGTTCGCATAATAGCA 57.565 33.333 0.00 0.00 0.00 3.49
2527 5253 8.677148 ACCTATAATTGTTCTGTTCGCATAAT 57.323 30.769 0.00 0.00 0.00 1.28
2532 5258 5.581085 ACAGACCTATAATTGTTCTGTTCGC 59.419 40.000 3.04 0.00 33.82 4.70
2533 5259 7.596749 AACAGACCTATAATTGTTCTGTTCG 57.403 36.000 12.43 0.00 41.31 3.95
2625 6245 5.221880 TCAACTTCATCTTGCAAAATTCCG 58.778 37.500 0.00 0.00 0.00 4.30
2706 6326 3.270944 TGGGCATCCAAACCACCT 58.729 55.556 0.00 0.00 40.73 4.00
2870 6490 2.892852 TCCTTGCCCAGTGAAAAAGATG 59.107 45.455 0.00 0.00 0.00 2.90
2874 6494 2.632512 GGAATCCTTGCCCAGTGAAAAA 59.367 45.455 0.00 0.00 0.00 1.94
2878 6498 1.075601 AAGGAATCCTTGCCCAGTGA 58.924 50.000 14.68 0.00 42.96 3.41
2975 6595 9.726438 GAGGGAGTATAATAACATGCTACAATT 57.274 33.333 0.00 0.00 0.00 2.32
2976 6596 8.322091 GGAGGGAGTATAATAACATGCTACAAT 58.678 37.037 0.00 0.00 0.00 2.71
2977 6597 7.524863 CGGAGGGAGTATAATAACATGCTACAA 60.525 40.741 0.00 0.00 0.00 2.41
2978 6598 6.071560 CGGAGGGAGTATAATAACATGCTACA 60.072 42.308 0.00 0.00 0.00 2.74
2979 6599 6.071503 ACGGAGGGAGTATAATAACATGCTAC 60.072 42.308 0.00 0.00 0.00 3.58
2980 6600 6.014647 ACGGAGGGAGTATAATAACATGCTA 58.985 40.000 0.00 0.00 0.00 3.49
2981 6601 4.838986 ACGGAGGGAGTATAATAACATGCT 59.161 41.667 0.00 0.00 0.00 3.79
2982 6602 5.148651 ACGGAGGGAGTATAATAACATGC 57.851 43.478 0.00 0.00 0.00 4.06
2983 6603 6.014499 AGGAACGGAGGGAGTATAATAACATG 60.014 42.308 0.00 0.00 0.00 3.21
2984 6604 6.082707 AGGAACGGAGGGAGTATAATAACAT 58.917 40.000 0.00 0.00 0.00 2.71
2985 6605 5.461327 AGGAACGGAGGGAGTATAATAACA 58.539 41.667 0.00 0.00 0.00 2.41
2986 6606 7.530426 TTAGGAACGGAGGGAGTATAATAAC 57.470 40.000 0.00 0.00 0.00 1.89
2987 6607 8.731591 ATTTAGGAACGGAGGGAGTATAATAA 57.268 34.615 0.00 0.00 0.00 1.40
2989 6609 8.912614 ATATTTAGGAACGGAGGGAGTATAAT 57.087 34.615 0.00 0.00 0.00 1.28
2990 6610 8.731591 AATATTTAGGAACGGAGGGAGTATAA 57.268 34.615 0.00 0.00 0.00 0.98
2991 6611 8.591072 CAAATATTTAGGAACGGAGGGAGTATA 58.409 37.037 0.00 0.00 0.00 1.47
2992 6612 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
2993 6613 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2994 6614 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2995 6615 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2996 6616 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2997 6617 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2998 6618 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3015 6635 9.787532 CACTTGTTGAAATCTCTAAAAAGACAA 57.212 29.630 0.00 0.00 0.00 3.18
3016 6636 9.173021 TCACTTGTTGAAATCTCTAAAAAGACA 57.827 29.630 0.00 0.00 0.00 3.41
3017 6637 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
3018 6638 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
3021 6641 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
3022 6642 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
3024 6644 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3025 6645 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3026 6646 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3027 6647 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3028 6648 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3029 6649 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3030 6650 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3031 6651 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3032 6652 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3033 6653 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3034 6654 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3035 6655 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3036 6656 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3037 6657 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3038 6658 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3039 6659 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3040 6660 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3041 6661 4.508124 CCTCATTTTGCTCCGTATGTAGTC 59.492 45.833 0.00 0.00 0.00 2.59
3042 6662 4.442706 CCTCATTTTGCTCCGTATGTAGT 58.557 43.478 0.00 0.00 0.00 2.73
3043 6663 3.809832 CCCTCATTTTGCTCCGTATGTAG 59.190 47.826 0.00 0.00 0.00 2.74
3044 6664 3.452990 TCCCTCATTTTGCTCCGTATGTA 59.547 43.478 0.00 0.00 0.00 2.29
3045 6665 2.238646 TCCCTCATTTTGCTCCGTATGT 59.761 45.455 0.00 0.00 0.00 2.29
3046 6666 2.917933 TCCCTCATTTTGCTCCGTATG 58.082 47.619 0.00 0.00 0.00 2.39
3047 6667 3.644966 TTCCCTCATTTTGCTCCGTAT 57.355 42.857 0.00 0.00 0.00 3.06
3048 6668 3.199946 AGATTCCCTCATTTTGCTCCGTA 59.800 43.478 0.00 0.00 0.00 4.02
3049 6669 2.025887 AGATTCCCTCATTTTGCTCCGT 60.026 45.455 0.00 0.00 0.00 4.69
3050 6670 2.648059 AGATTCCCTCATTTTGCTCCG 58.352 47.619 0.00 0.00 0.00 4.63
3051 6671 4.336713 GTGTAGATTCCCTCATTTTGCTCC 59.663 45.833 0.00 0.00 0.00 4.70
3052 6672 5.189180 AGTGTAGATTCCCTCATTTTGCTC 58.811 41.667 0.00 0.00 0.00 4.26
3053 6673 5.045286 AGAGTGTAGATTCCCTCATTTTGCT 60.045 40.000 0.00 0.00 0.00 3.91
3054 6674 5.189180 AGAGTGTAGATTCCCTCATTTTGC 58.811 41.667 0.00 0.00 0.00 3.68
3055 6675 8.792830 TTTAGAGTGTAGATTCCCTCATTTTG 57.207 34.615 0.00 0.00 0.00 2.44
3056 6676 9.981460 ATTTTAGAGTGTAGATTCCCTCATTTT 57.019 29.630 0.00 0.00 0.00 1.82
3060 6680 9.213777 ACATATTTTAGAGTGTAGATTCCCTCA 57.786 33.333 0.00 0.00 0.00 3.86
3061 6681 9.699703 GACATATTTTAGAGTGTAGATTCCCTC 57.300 37.037 0.00 0.00 0.00 4.30
3062 6682 9.440761 AGACATATTTTAGAGTGTAGATTCCCT 57.559 33.333 0.00 0.00 0.00 4.20
3091 6711 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3092 6712 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3105 6725 7.754851 TTTTAGAGGTTTCAAATGGACTACC 57.245 36.000 0.00 0.00 32.88 3.18
3106 6726 9.063615 TCTTTTTAGAGGTTTCAAATGGACTAC 57.936 33.333 0.00 0.00 0.00 2.73
3107 6727 9.063615 GTCTTTTTAGAGGTTTCAAATGGACTA 57.936 33.333 0.00 0.00 0.00 2.59
3108 6728 7.559897 TGTCTTTTTAGAGGTTTCAAATGGACT 59.440 33.333 0.00 0.00 0.00 3.85
3109 6729 7.712797 TGTCTTTTTAGAGGTTTCAAATGGAC 58.287 34.615 0.00 0.00 0.00 4.02
3110 6730 7.889873 TGTCTTTTTAGAGGTTTCAAATGGA 57.110 32.000 0.00 0.00 0.00 3.41
3111 6731 8.940768 TTTGTCTTTTTAGAGGTTTCAAATGG 57.059 30.769 0.00 0.00 0.00 3.16
3126 6746 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3127 6747 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3128 6748 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3129 6749 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3130 6750 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3131 6751 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3132 6752 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3133 6753 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3134 6754 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3135 6755 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
3136 6756 8.345306 AGATATACTCCCTCCGTTCCTAAATAT 58.655 37.037 0.00 0.00 0.00 1.28
3137 6757 7.706674 AGATATACTCCCTCCGTTCCTAAATA 58.293 38.462 0.00 0.00 0.00 1.40
3138 6758 6.563163 AGATATACTCCCTCCGTTCCTAAAT 58.437 40.000 0.00 0.00 0.00 1.40
3139 6759 5.961897 AGATATACTCCCTCCGTTCCTAAA 58.038 41.667 0.00 0.00 0.00 1.85
3140 6760 5.595814 AGATATACTCCCTCCGTTCCTAA 57.404 43.478 0.00 0.00 0.00 2.69
3141 6761 5.595814 AAGATATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
3142 6762 4.472690 AAGATATACTCCCTCCGTTCCT 57.527 45.455 0.00 0.00 0.00 3.36
3143 6763 5.163332 ACAAAAGATATACTCCCTCCGTTCC 60.163 44.000 0.00 0.00 0.00 3.62
3144 6764 5.915175 ACAAAAGATATACTCCCTCCGTTC 58.085 41.667 0.00 0.00 0.00 3.95
3145 6765 5.952347 ACAAAAGATATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
3146 6766 7.613551 ATTACAAAAGATATACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
3147 6767 9.021807 TCTATTACAAAAGATATACTCCCTCCG 57.978 37.037 0.00 0.00 0.00 4.63
3395 7140 6.642707 ATCATCCTAGAGTAAACTTCCGAG 57.357 41.667 0.00 0.00 0.00 4.63
4021 7809 8.258007 TGTCTTGGATTACTATCGTTTCTTCAT 58.742 33.333 0.00 0.00 0.00 2.57
4109 7902 4.941713 AGGGGCATCCAGTTATGTTTTTA 58.058 39.130 0.00 0.00 38.24 1.52
4442 8300 5.010933 TGGGGATTGCTGAATAAAACGTAA 58.989 37.500 0.00 0.00 0.00 3.18
4618 8482 9.530633 CGCTTTTATATTAGTTTACAGAGGAGT 57.469 33.333 0.00 0.00 0.00 3.85
4619 8483 9.530633 ACGCTTTTATATTAGTTTACAGAGGAG 57.469 33.333 0.00 0.00 0.00 3.69
4620 8484 9.880157 AACGCTTTTATATTAGTTTACAGAGGA 57.120 29.630 0.00 0.00 0.00 3.71
4637 8501 9.918630 ACTAAAGTAGTGATCTAAACGCTTTTA 57.081 29.630 10.23 0.00 37.69 1.52
4638 8502 8.828688 ACTAAAGTAGTGATCTAAACGCTTTT 57.171 30.769 10.23 0.00 37.69 2.27
4641 8505 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
4642 8506 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
4648 8512 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
4649 8513 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
4650 8514 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
4651 8515 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
4652 8516 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
4669 8533 9.106070 CCCTAAACTAATGTAATAAGAGCGTTT 57.894 33.333 0.00 0.00 0.00 3.60
4670 8534 8.480501 TCCCTAAACTAATGTAATAAGAGCGTT 58.519 33.333 0.00 0.00 0.00 4.84
4671 8535 8.015185 TCCCTAAACTAATGTAATAAGAGCGT 57.985 34.615 0.00 0.00 0.00 5.07
4672 8536 7.599245 CCTCCCTAAACTAATGTAATAAGAGCG 59.401 40.741 0.00 0.00 0.00 5.03
4673 8537 7.878644 CCCTCCCTAAACTAATGTAATAAGAGC 59.121 40.741 0.00 0.00 0.00 4.09
4674 8538 9.155785 TCCCTCCCTAAACTAATGTAATAAGAG 57.844 37.037 0.00 0.00 0.00 2.85
4675 8539 9.155785 CTCCCTCCCTAAACTAATGTAATAAGA 57.844 37.037 0.00 0.00 0.00 2.10
4676 8540 8.935741 ACTCCCTCCCTAAACTAATGTAATAAG 58.064 37.037 0.00 0.00 0.00 1.73
4677 8541 8.865244 ACTCCCTCCCTAAACTAATGTAATAA 57.135 34.615 0.00 0.00 0.00 1.40
4679 8543 9.461734 AATACTCCCTCCCTAAACTAATGTAAT 57.538 33.333 0.00 0.00 0.00 1.89
4680 8544 8.711170 CAATACTCCCTCCCTAAACTAATGTAA 58.289 37.037 0.00 0.00 0.00 2.41
4681 8545 8.069356 TCAATACTCCCTCCCTAAACTAATGTA 58.931 37.037 0.00 0.00 0.00 2.29
4682 8546 6.906901 TCAATACTCCCTCCCTAAACTAATGT 59.093 38.462 0.00 0.00 0.00 2.71
4683 8547 7.374975 TCAATACTCCCTCCCTAAACTAATG 57.625 40.000 0.00 0.00 0.00 1.90
4684 8548 8.582891 AATCAATACTCCCTCCCTAAACTAAT 57.417 34.615 0.00 0.00 0.00 1.73
4685 8549 8.401955 AAATCAATACTCCCTCCCTAAACTAA 57.598 34.615 0.00 0.00 0.00 2.24
4686 8550 9.684702 ATAAATCAATACTCCCTCCCTAAACTA 57.315 33.333 0.00 0.00 0.00 2.24
4687 8551 6.910259 AAATCAATACTCCCTCCCTAAACT 57.090 37.500 0.00 0.00 0.00 2.66
4688 8552 9.642343 AAATAAATCAATACTCCCTCCCTAAAC 57.358 33.333 0.00 0.00 0.00 2.01
4690 8554 9.862149 GAAAATAAATCAATACTCCCTCCCTAA 57.138 33.333 0.00 0.00 0.00 2.69
4691 8555 9.237706 AGAAAATAAATCAATACTCCCTCCCTA 57.762 33.333 0.00 0.00 0.00 3.53
4692 8556 8.119062 AGAAAATAAATCAATACTCCCTCCCT 57.881 34.615 0.00 0.00 0.00 4.20
4693 8557 8.768501 AAGAAAATAAATCAATACTCCCTCCC 57.231 34.615 0.00 0.00 0.00 4.30
4794 8744 8.736244 AGTCACTAGTGAAATCTCTAGAAAGAC 58.264 37.037 26.74 20.58 41.85 3.01
4857 8807 9.642343 ACCACATACGGATATATATAGACACAT 57.358 33.333 0.00 0.00 0.00 3.21
4902 8852 7.171167 GCTCCCCGTTCTTAAATATAAGTCTTC 59.829 40.741 0.00 0.00 39.65 2.87
4949 8900 3.067833 GCAAACTTTTAGGAGCTCGTCT 58.932 45.455 13.10 4.88 0.00 4.18
4950 8901 3.067833 AGCAAACTTTTAGGAGCTCGTC 58.932 45.455 13.10 0.00 0.00 4.20
4951 8902 3.067833 GAGCAAACTTTTAGGAGCTCGT 58.932 45.455 14.25 14.25 39.04 4.18
4952 8903 3.731274 GAGCAAACTTTTAGGAGCTCG 57.269 47.619 7.83 0.00 39.04 5.03
4991 8943 2.121291 TGCAGACAGTTGTGGACAAA 57.879 45.000 0.00 0.00 37.63 2.83
5052 9004 1.806623 GCAGTTATCGGCGTCCAATCT 60.807 52.381 6.85 0.00 0.00 2.40
5076 9028 1.658596 CATGTCGAATACACCACACGG 59.341 52.381 0.00 0.00 42.09 4.94
5281 9233 2.067605 TCATCCCGCGGGGTACAAT 61.068 57.895 42.36 26.13 44.74 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.