Multiple sequence alignment - TraesCS4D01G190200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G190200 chr4D 100.000 8296 0 0 1 8296 333059460 333067755 0.000000e+00 15320.0
1 TraesCS4D01G190200 chr4D 94.054 185 9 2 3631 3815 506130890 506131072 6.340000e-71 279.0
2 TraesCS4D01G190200 chr4D 92.473 186 12 2 3630 3815 247940268 247940451 1.780000e-66 265.0
3 TraesCS4D01G190200 chr4D 95.597 159 7 0 3893 4051 36836569 36836727 1.070000e-63 255.0
4 TraesCS4D01G190200 chr4A 95.194 4099 92 31 4215 8270 140289659 140285623 0.000000e+00 6381.0
5 TraesCS4D01G190200 chr4A 93.099 2985 121 36 879 3806 140293145 140290189 0.000000e+00 4292.0
6 TraesCS4D01G190200 chr4A 94.505 273 6 3 3893 4156 140290180 140289908 5.990000e-111 412.0
7 TraesCS4D01G190200 chr4A 85.897 156 16 4 1 152 140293641 140293488 2.400000e-35 161.0
8 TraesCS4D01G190200 chr4A 81.726 197 11 6 482 676 140293471 140293298 3.120000e-29 141.0
9 TraesCS4D01G190200 chr4B 93.416 3159 98 43 5130 8270 411523985 411527051 0.000000e+00 4580.0
10 TraesCS4D01G190200 chr4B 92.383 3046 149 37 819 3815 411519219 411522230 0.000000e+00 4263.0
11 TraesCS4D01G190200 chr4B 92.528 1258 46 12 3893 5114 411522225 411523470 0.000000e+00 1759.0
12 TraesCS4D01G190200 chr4B 86.538 104 9 3 482 583 411518559 411518659 8.800000e-20 110.0
13 TraesCS4D01G190200 chr4B 93.617 47 2 1 598 644 411518786 411518831 1.490000e-07 69.4
14 TraesCS4D01G190200 chr3D 93.772 289 16 2 198 485 43027669 43027956 4.600000e-117 433.0
15 TraesCS4D01G190200 chr3D 93.357 286 19 0 200 485 477843091 477843376 2.770000e-114 424.0
16 TraesCS4D01G190200 chr3D 87.761 335 31 7 4051 4379 27896182 27896512 4.700000e-102 383.0
17 TraesCS4D01G190200 chr3D 94.059 101 6 0 3809 3909 431631895 431631795 4.010000e-33 154.0
18 TraesCS4D01G190200 chr3D 91.818 110 6 3 3811 3917 179456734 179456625 5.190000e-32 150.0
19 TraesCS4D01G190200 chr3D 92.523 107 5 3 3802 3905 390122008 390121902 5.190000e-32 150.0
20 TraesCS4D01G190200 chr1D 93.993 283 16 1 202 483 349468405 349468687 2.140000e-115 427.0
21 TraesCS4D01G190200 chr1D 93.220 177 5 2 3893 4066 383252885 383252713 3.840000e-63 254.0
22 TraesCS4D01G190200 chr6D 92.857 294 19 2 199 490 100351652 100351945 7.700000e-115 425.0
23 TraesCS4D01G190200 chr6D 93.310 284 18 1 201 483 438835195 438834912 1.290000e-112 418.0
24 TraesCS4D01G190200 chr6D 92.513 187 11 2 3629 3815 346469261 346469078 1.780000e-66 265.0
25 TraesCS4D01G190200 chr6D 91.818 110 6 3 3801 3908 95294891 95294999 5.190000e-32 150.0
26 TraesCS4D01G190200 chr6D 94.792 96 3 1 3803 3898 185368072 185368165 1.870000e-31 148.0
27 TraesCS4D01G190200 chr1B 93.056 288 19 1 200 486 643042474 643042761 3.580000e-113 420.0
28 TraesCS4D01G190200 chr1B 94.054 185 9 2 3631 3815 24495235 24495417 6.340000e-71 279.0
29 TraesCS4D01G190200 chr5D 92.708 288 20 1 199 485 53584428 53584141 1.670000e-111 414.0
30 TraesCS4D01G190200 chr5D 92.473 186 12 2 3630 3815 5804480 5804663 1.780000e-66 265.0
31 TraesCS4D01G190200 chr5D 93.220 177 5 2 3893 4066 489353129 489352957 3.840000e-63 254.0
32 TraesCS4D01G190200 chr5D 83.509 285 28 9 4112 4379 344564801 344564519 1.790000e-61 248.0
33 TraesCS4D01G190200 chr5D 93.396 106 2 5 3801 3902 196857558 196857662 1.440000e-32 152.0
34 TraesCS4D01G190200 chr3A 92.440 291 20 2 198 487 703773267 703772978 1.670000e-111 414.0
35 TraesCS4D01G190200 chr3A 91.639 299 21 4 188 485 648881546 648881251 2.160000e-110 411.0
36 TraesCS4D01G190200 chr3A 84.663 326 27 10 4095 4399 100428672 100428995 3.760000e-78 303.0
37 TraesCS4D01G190200 chr3A 90.826 109 9 1 3798 3905 150070699 150070807 2.410000e-30 145.0
38 TraesCS4D01G190200 chr7A 84.084 333 33 6 4095 4407 338628606 338628274 3.760000e-78 303.0
39 TraesCS4D01G190200 chr1A 92.344 209 13 2 3625 3833 85835986 85835781 2.260000e-75 294.0
40 TraesCS4D01G190200 chr1A 93.514 185 10 2 3631 3815 415643622 415643804 2.950000e-69 274.0
41 TraesCS4D01G190200 chr1A 91.935 186 12 2 3630 3815 549305937 549305755 2.970000e-64 257.0
42 TraesCS4D01G190200 chr1A 93.491 169 5 3 3899 4066 85835677 85835514 6.430000e-61 246.0
43 TraesCS4D01G190200 chr1A 92.571 175 7 3 3893 4066 357767941 357768110 6.430000e-61 246.0
44 TraesCS4D01G190200 chr1A 87.179 156 10 3 4255 4400 415644075 415644230 1.430000e-37 169.0
45 TraesCS4D01G190200 chr1A 77.329 322 40 20 4099 4406 85835389 85835087 8.620000e-35 159.0
46 TraesCS4D01G190200 chr2A 92.647 204 12 3 3630 3833 99786767 99786567 2.930000e-74 291.0
47 TraesCS4D01G190200 chr2A 91.716 169 8 3 3899 4066 99786470 99786307 6.480000e-56 230.0
48 TraesCS4D01G190200 chr2A 86.452 155 11 4 4255 4399 631629745 631629899 2.400000e-35 161.0
49 TraesCS4D01G190200 chr2A 93.137 102 7 0 3805 3906 776162501 776162400 5.190000e-32 150.0
50 TraesCS4D01G190200 chr3B 94.054 185 10 1 3631 3815 650613244 650613061 6.340000e-71 279.0
51 TraesCS4D01G190200 chr3B 96.774 93 3 0 3813 3905 265853357 265853265 1.110000e-33 156.0
52 TraesCS4D01G190200 chrUn 82.051 351 35 11 4067 4399 137655468 137655128 2.950000e-69 274.0
53 TraesCS4D01G190200 chrUn 95.597 159 7 0 3893 4051 298894628 298894470 1.070000e-63 255.0
54 TraesCS4D01G190200 chr2D 93.011 186 10 3 3631 3815 526824533 526824350 1.370000e-67 268.0
55 TraesCS4D01G190200 chr2D 87.742 155 9 4 4255 4399 63707333 63707179 1.110000e-38 172.0
56 TraesCS4D01G190200 chr7D 91.935 186 12 2 3630 3815 104461068 104460886 2.970000e-64 257.0
57 TraesCS4D01G190200 chr7D 92.655 177 6 4 3893 4066 91110356 91110184 1.790000e-61 248.0
58 TraesCS4D01G190200 chr7D 93.478 92 6 0 4305 4396 121903734 121903825 4.040000e-28 137.0
59 TraesCS4D01G190200 chr6A 80.057 351 42 15 4067 4399 30996852 30997192 1.390000e-57 235.0
60 TraesCS4D01G190200 chr7B 80.519 154 15 5 4256 4397 705492614 705492464 4.100000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G190200 chr4D 333059460 333067755 8295 False 15320.00 15320 100.000000 1 8296 1 chr4D.!!$F3 8295
1 TraesCS4D01G190200 chr4A 140285623 140293641 8018 True 2277.40 6381 90.084200 1 8270 5 chr4A.!!$R1 8269
2 TraesCS4D01G190200 chr4B 411518559 411527051 8492 False 2156.28 4580 91.696400 482 8270 5 chr4B.!!$F1 7788
3 TraesCS4D01G190200 chr1A 85835087 85835986 899 True 233.00 294 87.721333 3625 4406 3 chr1A.!!$R2 781
4 TraesCS4D01G190200 chr1A 415643622 415644230 608 False 221.50 274 90.346500 3631 4400 2 chr1A.!!$F2 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 117 0.036765 AAAAGTGGCCGCGATCTGTA 60.037 50.000 8.23 0.00 0.00 2.74 F
823 1231 0.106519 TGAGGGGCTACCGTACTACC 60.107 60.000 0.00 0.00 46.96 3.18 F
1210 1671 0.031010 AAACCCTAGCCTCCCGATCT 60.031 55.000 0.00 0.00 0.00 2.75 F
1496 1961 0.034059 CCAGGGAGCATGGTCGTATC 59.966 60.000 18.14 8.15 32.85 2.24 F
3017 3531 2.009051 GGGTGCCTTTTATTTGCATGC 58.991 47.619 11.82 11.82 37.34 4.06 F
3687 4201 1.005215 AGGCCACAGCTTAGAGCAATT 59.995 47.619 5.01 0.00 45.56 2.32 F
4545 5437 1.611851 CCAGAGAGGGAGTGCAGGT 60.612 63.158 0.00 0.00 0.00 4.00 F
4693 5593 2.036958 TCGATGCCATTGTTACTGGG 57.963 50.000 0.00 0.00 34.16 4.45 F
6170 7593 1.003580 TGCTGCTTTCCCAACTCTAGG 59.996 52.381 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1596 0.460987 CTAAGCAGCGGGGTGAAGAG 60.461 60.000 1.43 0.00 0.00 2.85 R
1727 2201 2.931105 TGTAGGCCCCGGAAAGCA 60.931 61.111 0.73 0.00 0.00 3.91 R
3041 3555 3.349006 CGCCTGCTGACACCACAC 61.349 66.667 0.00 0.00 0.00 3.82 R
3194 3708 4.583442 GAGGGGCCTAGGGGAGGG 62.583 77.778 11.72 0.00 46.81 4.30 R
3881 4442 0.325296 TGCTACTTCCTCCGTCCCAT 60.325 55.000 0.00 0.00 0.00 4.00 R
4754 5654 1.130054 ACAGTCATGGCCACCTCTGT 61.130 55.000 23.87 23.87 0.00 3.41 R
5595 7009 4.111916 GCATACAATACCAATGGTTGCAC 58.888 43.478 11.41 0.00 37.09 4.57 R
6429 7852 4.467438 TCAGCTTAATCCATGACTCACTCA 59.533 41.667 0.00 0.00 0.00 3.41 R
7899 9343 0.510359 GAGCGAGCACAAACACAGAG 59.490 55.000 0.00 0.00 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.038892 GCTAACCCGTTCACACTCGA 60.039 55.000 0.00 0.00 0.00 4.04
23 24 1.268899 CTAACCCGTTCACACTCGAGT 59.731 52.381 13.58 13.58 0.00 4.18
55 59 2.986306 GCTGCTGCTTGTTGGCGAT 61.986 57.895 8.53 0.00 36.03 4.58
76 80 1.208614 CGCTTGGAACTTCAGCTGC 59.791 57.895 9.47 0.00 0.00 5.25
77 81 1.208614 GCTTGGAACTTCAGCTGCG 59.791 57.895 9.47 4.98 0.00 5.18
78 82 1.208614 CTTGGAACTTCAGCTGCGC 59.791 57.895 9.47 0.00 0.00 6.09
110 114 1.745489 GGAAAAGTGGCCGCGATCT 60.745 57.895 8.23 0.00 0.00 2.75
113 117 0.036765 AAAAGTGGCCGCGATCTGTA 60.037 50.000 8.23 0.00 0.00 2.74
114 118 0.460284 AAAGTGGCCGCGATCTGTAG 60.460 55.000 8.23 0.00 0.00 2.74
152 156 5.996669 AAACGTGATTAGTTCTTCGGTTT 57.003 34.783 0.00 0.00 31.93 3.27
153 157 5.587033 AACGTGATTAGTTCTTCGGTTTC 57.413 39.130 0.00 0.00 0.00 2.78
154 158 4.879598 ACGTGATTAGTTCTTCGGTTTCT 58.120 39.130 0.00 0.00 0.00 2.52
155 159 4.684703 ACGTGATTAGTTCTTCGGTTTCTG 59.315 41.667 0.00 0.00 0.00 3.02
156 160 4.684703 CGTGATTAGTTCTTCGGTTTCTGT 59.315 41.667 0.00 0.00 0.00 3.41
157 161 5.860182 CGTGATTAGTTCTTCGGTTTCTGTA 59.140 40.000 0.00 0.00 0.00 2.74
158 162 6.364165 CGTGATTAGTTCTTCGGTTTCTGTAA 59.636 38.462 0.00 0.00 0.00 2.41
159 163 7.508134 GTGATTAGTTCTTCGGTTTCTGTAAC 58.492 38.462 0.00 0.00 35.94 2.50
176 180 3.406200 CCTCCCAGAGGCCCACTG 61.406 72.222 17.44 17.44 43.29 3.66
177 181 4.106925 CTCCCAGAGGCCCACTGC 62.107 72.222 18.56 0.00 40.16 4.40
188 192 2.512286 CCACTGCGCGTCATGGAT 60.512 61.111 16.62 0.00 33.80 3.41
189 193 2.705220 CACTGCGCGTCATGGATG 59.295 61.111 8.43 0.00 0.00 3.51
205 209 7.151308 GTCATGGATGTGAGATTACTTAGAGG 58.849 42.308 0.00 0.00 0.00 3.69
206 210 6.268617 TCATGGATGTGAGATTACTTAGAGGG 59.731 42.308 0.00 0.00 0.00 4.30
207 211 5.529289 TGGATGTGAGATTACTTAGAGGGT 58.471 41.667 0.00 0.00 0.00 4.34
208 212 5.363868 TGGATGTGAGATTACTTAGAGGGTG 59.636 44.000 0.00 0.00 0.00 4.61
209 213 5.364157 GGATGTGAGATTACTTAGAGGGTGT 59.636 44.000 0.00 0.00 0.00 4.16
210 214 6.127026 GGATGTGAGATTACTTAGAGGGTGTT 60.127 42.308 0.00 0.00 0.00 3.32
211 215 6.681729 TGTGAGATTACTTAGAGGGTGTTT 57.318 37.500 0.00 0.00 0.00 2.83
212 216 6.464222 TGTGAGATTACTTAGAGGGTGTTTG 58.536 40.000 0.00 0.00 0.00 2.93
213 217 6.042781 TGTGAGATTACTTAGAGGGTGTTTGT 59.957 38.462 0.00 0.00 0.00 2.83
214 218 6.935208 GTGAGATTACTTAGAGGGTGTTTGTT 59.065 38.462 0.00 0.00 0.00 2.83
215 219 7.444487 GTGAGATTACTTAGAGGGTGTTTGTTT 59.556 37.037 0.00 0.00 0.00 2.83
216 220 7.660208 TGAGATTACTTAGAGGGTGTTTGTTTC 59.340 37.037 0.00 0.00 0.00 2.78
217 221 6.940867 AGATTACTTAGAGGGTGTTTGTTTCC 59.059 38.462 0.00 0.00 0.00 3.13
218 222 4.513406 ACTTAGAGGGTGTTTGTTTCCA 57.487 40.909 0.00 0.00 0.00 3.53
219 223 4.461198 ACTTAGAGGGTGTTTGTTTCCAG 58.539 43.478 0.00 0.00 0.00 3.86
220 224 2.364972 AGAGGGTGTTTGTTTCCAGG 57.635 50.000 0.00 0.00 0.00 4.45
221 225 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
222 226 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
223 227 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
224 228 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
225 229 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
226 230 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
227 231 4.149598 GGTGTTTGTTTCCAGGGACTTAT 58.850 43.478 0.00 0.00 34.60 1.73
228 232 4.587262 GGTGTTTGTTTCCAGGGACTTATT 59.413 41.667 0.00 0.00 34.60 1.40
229 233 5.508994 GGTGTTTGTTTCCAGGGACTTATTG 60.509 44.000 0.00 0.00 34.60 1.90
230 234 4.586841 TGTTTGTTTCCAGGGACTTATTGG 59.413 41.667 0.00 0.00 34.60 3.16
231 235 4.463050 TTGTTTCCAGGGACTTATTGGT 57.537 40.909 0.00 0.00 34.60 3.67
232 236 4.463050 TGTTTCCAGGGACTTATTGGTT 57.537 40.909 0.00 0.00 34.60 3.67
233 237 4.810345 TGTTTCCAGGGACTTATTGGTTT 58.190 39.130 0.00 0.00 34.60 3.27
234 238 5.954757 TGTTTCCAGGGACTTATTGGTTTA 58.045 37.500 0.00 0.00 34.60 2.01
235 239 6.007703 TGTTTCCAGGGACTTATTGGTTTAG 58.992 40.000 0.00 0.00 34.60 1.85
236 240 4.855298 TCCAGGGACTTATTGGTTTAGG 57.145 45.455 0.00 0.00 34.60 2.69
237 241 3.526019 TCCAGGGACTTATTGGTTTAGGG 59.474 47.826 0.00 0.00 34.60 3.53
238 242 3.526019 CCAGGGACTTATTGGTTTAGGGA 59.474 47.826 0.00 0.00 34.60 4.20
239 243 4.524053 CAGGGACTTATTGGTTTAGGGAC 58.476 47.826 0.00 0.00 34.60 4.46
240 244 4.227527 CAGGGACTTATTGGTTTAGGGACT 59.772 45.833 0.00 0.00 39.39 3.85
241 245 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
242 246 6.034003 AGGGACTTATTGGTTTAGGGACTTA 58.966 40.000 0.00 0.00 34.75 2.24
243 247 6.506413 AGGGACTTATTGGTTTAGGGACTTAA 59.494 38.462 0.00 0.00 34.75 1.85
244 248 7.018851 AGGGACTTATTGGTTTAGGGACTTAAA 59.981 37.037 0.00 0.00 34.75 1.52
245 249 7.670979 GGGACTTATTGGTTTAGGGACTTAAAA 59.329 37.037 0.00 0.00 41.75 1.52
246 250 9.081204 GGACTTATTGGTTTAGGGACTTAAAAA 57.919 33.333 0.00 0.00 41.75 1.94
266 270 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
268 272 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
269 273 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
270 274 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
271 275 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
272 276 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
273 277 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
274 278 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
275 279 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
276 280 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
277 281 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
278 282 4.993705 AGTCCCATCTAAACCAAACAGA 57.006 40.909 0.00 0.00 0.00 3.41
279 283 5.319043 AGTCCCATCTAAACCAAACAGAA 57.681 39.130 0.00 0.00 0.00 3.02
280 284 5.316987 AGTCCCATCTAAACCAAACAGAAG 58.683 41.667 0.00 0.00 0.00 2.85
281 285 4.459337 GTCCCATCTAAACCAAACAGAAGG 59.541 45.833 0.00 0.00 0.00 3.46
282 286 3.763897 CCCATCTAAACCAAACAGAAGGG 59.236 47.826 0.00 0.00 40.03 3.95
283 287 3.193479 CCATCTAAACCAAACAGAAGGGC 59.807 47.826 0.00 0.00 0.00 5.19
284 288 2.871453 TCTAAACCAAACAGAAGGGCC 58.129 47.619 0.00 0.00 0.00 5.80
285 289 2.445525 TCTAAACCAAACAGAAGGGCCT 59.554 45.455 0.00 0.00 0.00 5.19
286 290 2.174685 AAACCAAACAGAAGGGCCTT 57.825 45.000 21.09 21.09 0.00 4.35
287 291 3.322191 AAACCAAACAGAAGGGCCTTA 57.678 42.857 20.97 0.00 0.00 2.69
288 292 3.542969 AACCAAACAGAAGGGCCTTAT 57.457 42.857 20.97 14.46 0.00 1.73
289 293 4.668138 AACCAAACAGAAGGGCCTTATA 57.332 40.909 20.97 0.00 0.00 0.98
290 294 4.236527 ACCAAACAGAAGGGCCTTATAG 57.763 45.455 20.97 14.23 0.00 1.31
291 295 3.053619 ACCAAACAGAAGGGCCTTATAGG 60.054 47.826 20.97 17.28 38.80 2.57
292 296 3.555966 CAAACAGAAGGGCCTTATAGGG 58.444 50.000 20.97 6.99 35.37 3.53
293 297 2.889522 ACAGAAGGGCCTTATAGGGA 57.110 50.000 20.97 0.00 35.37 4.20
294 298 3.368921 ACAGAAGGGCCTTATAGGGAT 57.631 47.619 20.97 0.00 35.37 3.85
295 299 3.681311 ACAGAAGGGCCTTATAGGGATT 58.319 45.455 20.97 0.00 35.37 3.01
296 300 4.055094 ACAGAAGGGCCTTATAGGGATTT 58.945 43.478 20.97 0.00 35.37 2.17
297 301 5.232347 ACAGAAGGGCCTTATAGGGATTTA 58.768 41.667 20.97 0.00 35.37 1.40
298 302 5.674958 ACAGAAGGGCCTTATAGGGATTTAA 59.325 40.000 20.97 0.00 35.37 1.52
299 303 6.161526 ACAGAAGGGCCTTATAGGGATTTAAA 59.838 38.462 20.97 0.00 35.37 1.52
300 304 6.490381 CAGAAGGGCCTTATAGGGATTTAAAC 59.510 42.308 20.97 0.88 35.37 2.01
301 305 6.393141 AGAAGGGCCTTATAGGGATTTAAACT 59.607 38.462 20.97 3.52 35.37 2.66
302 306 5.953571 AGGGCCTTATAGGGATTTAAACTG 58.046 41.667 0.00 0.00 35.37 3.16
303 307 5.077564 GGGCCTTATAGGGATTTAAACTGG 58.922 45.833 4.79 0.00 35.37 4.00
304 308 5.077564 GGCCTTATAGGGATTTAAACTGGG 58.922 45.833 4.79 0.00 35.37 4.45
305 309 4.523173 GCCTTATAGGGATTTAAACTGGGC 59.477 45.833 4.79 0.00 35.37 5.36
306 310 5.701224 CCTTATAGGGATTTAAACTGGGCA 58.299 41.667 0.00 0.00 0.00 5.36
307 311 6.314917 CCTTATAGGGATTTAAACTGGGCAT 58.685 40.000 0.00 0.00 0.00 4.40
308 312 6.782494 CCTTATAGGGATTTAAACTGGGCATT 59.218 38.462 0.00 0.00 0.00 3.56
309 313 7.290014 CCTTATAGGGATTTAAACTGGGCATTT 59.710 37.037 0.00 0.00 0.00 2.32
310 314 4.824479 AGGGATTTAAACTGGGCATTTG 57.176 40.909 0.00 0.00 0.00 2.32
311 315 4.424842 AGGGATTTAAACTGGGCATTTGA 58.575 39.130 0.00 0.00 0.00 2.69
312 316 4.467438 AGGGATTTAAACTGGGCATTTGAG 59.533 41.667 0.00 0.00 0.00 3.02
313 317 4.466015 GGGATTTAAACTGGGCATTTGAGA 59.534 41.667 0.00 0.00 0.00 3.27
314 318 5.410924 GGATTTAAACTGGGCATTTGAGAC 58.589 41.667 0.00 0.00 0.00 3.36
315 319 5.185828 GGATTTAAACTGGGCATTTGAGACT 59.814 40.000 0.00 0.00 0.00 3.24
316 320 6.295292 GGATTTAAACTGGGCATTTGAGACTT 60.295 38.462 0.00 0.00 0.00 3.01
317 321 7.093945 GGATTTAAACTGGGCATTTGAGACTTA 60.094 37.037 0.00 0.00 0.00 2.24
318 322 7.775053 TTTAAACTGGGCATTTGAGACTTAT 57.225 32.000 0.00 0.00 0.00 1.73
319 323 5.649782 AAACTGGGCATTTGAGACTTATG 57.350 39.130 0.00 0.00 0.00 1.90
320 324 4.574674 ACTGGGCATTTGAGACTTATGA 57.425 40.909 0.00 0.00 0.00 2.15
321 325 4.922206 ACTGGGCATTTGAGACTTATGAA 58.078 39.130 0.00 0.00 0.00 2.57
322 326 5.324409 ACTGGGCATTTGAGACTTATGAAA 58.676 37.500 0.00 0.00 0.00 2.69
323 327 5.954150 ACTGGGCATTTGAGACTTATGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
324 328 7.118723 ACTGGGCATTTGAGACTTATGAAATA 58.881 34.615 0.00 0.00 0.00 1.40
325 329 7.615365 ACTGGGCATTTGAGACTTATGAAATAA 59.385 33.333 0.00 0.00 36.20 1.40
383 387 9.396022 AGTTGTAATATGGTCTTTTAGTCCATG 57.604 33.333 13.41 0.00 42.62 3.66
384 388 9.174166 GTTGTAATATGGTCTTTTAGTCCATGT 57.826 33.333 13.41 6.18 42.62 3.21
385 389 9.747898 TTGTAATATGGTCTTTTAGTCCATGTT 57.252 29.630 15.13 15.13 42.62 2.71
389 393 9.975218 AATATGGTCTTTTAGTCCATGTTAAGT 57.025 29.630 13.41 0.00 42.62 2.24
390 394 7.923414 ATGGTCTTTTAGTCCATGTTAAGTC 57.077 36.000 4.95 0.00 41.46 3.01
391 395 6.235664 TGGTCTTTTAGTCCATGTTAAGTCC 58.764 40.000 0.00 0.00 28.55 3.85
392 396 6.183361 TGGTCTTTTAGTCCATGTTAAGTCCA 60.183 38.462 0.00 0.00 28.55 4.02
393 397 6.371825 GGTCTTTTAGTCCATGTTAAGTCCAG 59.628 42.308 0.00 0.00 0.00 3.86
394 398 6.371825 GTCTTTTAGTCCATGTTAAGTCCAGG 59.628 42.308 0.00 0.00 0.00 4.45
395 399 6.271391 TCTTTTAGTCCATGTTAAGTCCAGGA 59.729 38.462 0.00 0.00 0.00 3.86
396 400 6.442541 TTTAGTCCATGTTAAGTCCAGGAA 57.557 37.500 0.00 0.00 0.00 3.36
397 401 4.287766 AGTCCATGTTAAGTCCAGGAAC 57.712 45.455 0.00 0.00 0.00 3.62
398 402 3.009143 AGTCCATGTTAAGTCCAGGAACC 59.991 47.826 0.00 0.00 0.00 3.62
399 403 2.983192 TCCATGTTAAGTCCAGGAACCA 59.017 45.455 0.00 0.00 0.00 3.67
400 404 3.396276 TCCATGTTAAGTCCAGGAACCAA 59.604 43.478 0.00 0.00 0.00 3.67
401 405 4.141135 TCCATGTTAAGTCCAGGAACCAAA 60.141 41.667 0.00 0.00 0.00 3.28
402 406 4.022329 CCATGTTAAGTCCAGGAACCAAAC 60.022 45.833 0.00 0.00 0.00 2.93
403 407 4.237976 TGTTAAGTCCAGGAACCAAACA 57.762 40.909 0.00 0.00 0.00 2.83
404 408 4.204012 TGTTAAGTCCAGGAACCAAACAG 58.796 43.478 0.00 0.00 0.00 3.16
405 409 4.080243 TGTTAAGTCCAGGAACCAAACAGA 60.080 41.667 0.00 0.00 0.00 3.41
406 410 3.884037 AAGTCCAGGAACCAAACAGAT 57.116 42.857 0.00 0.00 0.00 2.90
407 411 4.993705 AAGTCCAGGAACCAAACAGATA 57.006 40.909 0.00 0.00 0.00 1.98
408 412 4.993705 AGTCCAGGAACCAAACAGATAA 57.006 40.909 0.00 0.00 0.00 1.75
409 413 4.911390 AGTCCAGGAACCAAACAGATAAG 58.089 43.478 0.00 0.00 0.00 1.73
410 414 4.010349 GTCCAGGAACCAAACAGATAAGG 58.990 47.826 0.00 0.00 0.00 2.69
411 415 3.913799 TCCAGGAACCAAACAGATAAGGA 59.086 43.478 0.00 0.00 0.00 3.36
412 416 4.010349 CCAGGAACCAAACAGATAAGGAC 58.990 47.826 0.00 0.00 0.00 3.85
413 417 4.263506 CCAGGAACCAAACAGATAAGGACT 60.264 45.833 0.00 0.00 0.00 3.85
414 418 5.316987 CAGGAACCAAACAGATAAGGACTT 58.683 41.667 0.00 0.00 0.00 3.01
415 419 5.770162 CAGGAACCAAACAGATAAGGACTTT 59.230 40.000 0.00 0.00 0.00 2.66
416 420 6.265422 CAGGAACCAAACAGATAAGGACTTTT 59.735 38.462 0.00 0.00 0.00 2.27
417 421 6.839134 AGGAACCAAACAGATAAGGACTTTTT 59.161 34.615 0.00 0.00 0.00 1.94
418 422 8.002459 AGGAACCAAACAGATAAGGACTTTTTA 58.998 33.333 0.00 0.00 0.00 1.52
419 423 8.297426 GGAACCAAACAGATAAGGACTTTTTAG 58.703 37.037 0.00 0.00 0.00 1.85
420 424 7.761038 ACCAAACAGATAAGGACTTTTTAGG 57.239 36.000 0.00 0.00 0.00 2.69
421 425 6.719829 ACCAAACAGATAAGGACTTTTTAGGG 59.280 38.462 0.00 0.00 0.00 3.53
422 426 6.946009 CCAAACAGATAAGGACTTTTTAGGGA 59.054 38.462 0.00 0.00 0.00 4.20
423 427 7.094334 CCAAACAGATAAGGACTTTTTAGGGAC 60.094 40.741 0.00 0.00 0.00 4.46
424 428 6.063496 ACAGATAAGGACTTTTTAGGGACC 57.937 41.667 0.00 0.00 0.00 4.46
425 429 5.791141 ACAGATAAGGACTTTTTAGGGACCT 59.209 40.000 0.00 0.00 0.00 3.85
426 430 6.116126 CAGATAAGGACTTTTTAGGGACCTG 58.884 44.000 0.00 0.00 0.00 4.00
427 431 3.808834 AAGGACTTTTTAGGGACCTGG 57.191 47.619 0.00 0.00 0.00 4.45
428 432 1.993301 AGGACTTTTTAGGGACCTGGG 59.007 52.381 0.00 0.00 0.00 4.45
429 433 1.990327 GGACTTTTTAGGGACCTGGGA 59.010 52.381 0.00 0.00 0.00 4.37
430 434 2.290768 GGACTTTTTAGGGACCTGGGAC 60.291 54.545 0.00 0.00 0.00 4.46
431 435 2.643304 GACTTTTTAGGGACCTGGGACT 59.357 50.000 0.00 0.00 0.00 3.85
432 436 2.643304 ACTTTTTAGGGACCTGGGACTC 59.357 50.000 0.00 0.00 0.00 3.36
433 437 2.426431 TTTTAGGGACCTGGGACTCA 57.574 50.000 0.00 0.00 0.00 3.41
434 438 2.661176 TTTAGGGACCTGGGACTCAT 57.339 50.000 0.00 0.00 0.00 2.90
435 439 3.788116 TTTAGGGACCTGGGACTCATA 57.212 47.619 0.00 0.00 0.00 2.15
436 440 3.788116 TTAGGGACCTGGGACTCATAA 57.212 47.619 0.00 0.00 0.00 1.90
437 441 2.182516 AGGGACCTGGGACTCATAAG 57.817 55.000 0.00 0.00 0.00 1.73
438 442 1.366435 AGGGACCTGGGACTCATAAGT 59.634 52.381 0.00 0.00 38.88 2.24
439 443 2.197465 GGGACCTGGGACTCATAAGTT 58.803 52.381 0.00 0.00 35.28 2.66
440 444 2.092914 GGGACCTGGGACTCATAAGTTG 60.093 54.545 0.00 0.00 35.28 3.16
441 445 2.092914 GGACCTGGGACTCATAAGTTGG 60.093 54.545 0.00 0.00 35.28 3.77
442 446 1.916181 ACCTGGGACTCATAAGTTGGG 59.084 52.381 0.00 0.00 35.28 4.12
443 447 2.196595 CCTGGGACTCATAAGTTGGGA 58.803 52.381 0.00 0.00 35.28 4.37
444 448 2.092914 CCTGGGACTCATAAGTTGGGAC 60.093 54.545 0.00 0.00 35.28 4.46
445 449 2.840651 CTGGGACTCATAAGTTGGGACT 59.159 50.000 0.00 0.00 35.28 3.85
446 450 4.030913 CTGGGACTCATAAGTTGGGACTA 58.969 47.826 0.00 0.00 35.28 2.59
447 451 4.431378 TGGGACTCATAAGTTGGGACTAA 58.569 43.478 0.00 0.00 35.28 2.24
448 452 4.847512 TGGGACTCATAAGTTGGGACTAAA 59.152 41.667 0.00 0.00 35.28 1.85
449 453 5.311121 TGGGACTCATAAGTTGGGACTAAAA 59.689 40.000 0.00 0.00 35.28 1.52
450 454 6.183361 TGGGACTCATAAGTTGGGACTAAAAA 60.183 38.462 0.00 0.00 35.28 1.94
474 478 8.950007 AAAAATCCTAGGACTTATGAACCAAA 57.050 30.769 15.42 0.00 0.00 3.28
475 479 7.939784 AAATCCTAGGACTTATGAACCAAAC 57.060 36.000 15.42 0.00 0.00 2.93
476 480 6.636454 ATCCTAGGACTTATGAACCAAACA 57.364 37.500 15.42 0.00 0.00 2.83
477 481 6.049955 TCCTAGGACTTATGAACCAAACAG 57.950 41.667 7.62 0.00 0.00 3.16
478 482 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
479 483 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
480 484 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
481 485 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
482 486 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
483 487 2.990740 TATGAACCAAACAGGGCCTT 57.009 45.000 1.32 0.00 43.89 4.35
484 488 2.990740 ATGAACCAAACAGGGCCTTA 57.009 45.000 1.32 0.00 43.89 2.69
485 489 2.757894 TGAACCAAACAGGGCCTTAA 57.242 45.000 1.32 0.00 43.89 1.85
486 490 3.033659 TGAACCAAACAGGGCCTTAAA 57.966 42.857 1.32 0.00 43.89 1.52
487 491 2.962421 TGAACCAAACAGGGCCTTAAAG 59.038 45.455 1.32 0.00 43.89 1.85
488 492 1.338107 ACCAAACAGGGCCTTAAAGC 58.662 50.000 1.32 0.00 43.89 3.51
489 493 1.337118 CCAAACAGGGCCTTAAAGCA 58.663 50.000 1.32 0.00 0.00 3.91
490 494 1.273327 CCAAACAGGGCCTTAAAGCAG 59.727 52.381 1.32 0.00 0.00 4.24
491 495 1.963515 CAAACAGGGCCTTAAAGCAGT 59.036 47.619 1.32 0.00 0.00 4.40
523 527 3.256704 TGGTCTTACCAGAACCAGGAAT 58.743 45.455 0.00 0.00 44.79 3.01
540 544 3.638484 GGAATGTTTCCGTTGGAACTTG 58.362 45.455 0.00 0.00 41.87 3.16
541 545 3.552068 GGAATGTTTCCGTTGGAACTTGG 60.552 47.826 0.00 0.00 41.87 3.61
677 1084 6.017934 TCACTTTTGTAGCAAATCAGTCTGAC 60.018 38.462 4.21 0.00 0.00 3.51
684 1091 5.836821 AGCAAATCAGTCTGACGTATAGA 57.163 39.130 4.21 0.00 0.00 1.98
703 1110 7.201821 CGTATAGATTCTTTCTTTTGGGGCAAT 60.202 37.037 0.00 0.00 35.79 3.56
704 1111 5.830799 AGATTCTTTCTTTTGGGGCAATT 57.169 34.783 0.00 0.00 0.00 2.32
730 1137 7.880160 TTTTTGAGAGACATGAGGAAGAAAA 57.120 32.000 0.00 0.00 0.00 2.29
731 1138 6.867662 TTTGAGAGACATGAGGAAGAAAAC 57.132 37.500 0.00 0.00 0.00 2.43
732 1139 5.551305 TGAGAGACATGAGGAAGAAAACA 57.449 39.130 0.00 0.00 0.00 2.83
733 1140 5.928976 TGAGAGACATGAGGAAGAAAACAA 58.071 37.500 0.00 0.00 0.00 2.83
734 1141 6.356556 TGAGAGACATGAGGAAGAAAACAAA 58.643 36.000 0.00 0.00 0.00 2.83
762 1170 6.373186 AAAACAGAGCAAAGTAACAGTACC 57.627 37.500 0.00 0.00 0.00 3.34
763 1171 4.682778 ACAGAGCAAAGTAACAGTACCA 57.317 40.909 0.00 0.00 0.00 3.25
764 1172 4.377897 ACAGAGCAAAGTAACAGTACCAC 58.622 43.478 0.00 0.00 0.00 4.16
765 1173 3.746492 CAGAGCAAAGTAACAGTACCACC 59.254 47.826 0.00 0.00 0.00 4.61
766 1174 3.389983 AGAGCAAAGTAACAGTACCACCA 59.610 43.478 0.00 0.00 0.00 4.17
767 1175 4.041691 AGAGCAAAGTAACAGTACCACCAT 59.958 41.667 0.00 0.00 0.00 3.55
768 1176 4.324267 AGCAAAGTAACAGTACCACCATC 58.676 43.478 0.00 0.00 0.00 3.51
769 1177 4.069304 GCAAAGTAACAGTACCACCATCA 58.931 43.478 0.00 0.00 0.00 3.07
770 1178 4.700213 GCAAAGTAACAGTACCACCATCAT 59.300 41.667 0.00 0.00 0.00 2.45
771 1179 5.391950 GCAAAGTAACAGTACCACCATCATG 60.392 44.000 0.00 0.00 0.00 3.07
772 1180 3.873910 AGTAACAGTACCACCATCATGC 58.126 45.455 0.00 0.00 0.00 4.06
773 1181 2.877097 AACAGTACCACCATCATGCA 57.123 45.000 0.00 0.00 0.00 3.96
774 1182 2.877097 ACAGTACCACCATCATGCAA 57.123 45.000 0.00 0.00 0.00 4.08
775 1183 3.153369 ACAGTACCACCATCATGCAAA 57.847 42.857 0.00 0.00 0.00 3.68
776 1184 3.495331 ACAGTACCACCATCATGCAAAA 58.505 40.909 0.00 0.00 0.00 2.44
777 1185 3.894427 ACAGTACCACCATCATGCAAAAA 59.106 39.130 0.00 0.00 0.00 1.94
802 1210 7.990541 AAAAAGTAACCGTACAACCATTTTC 57.009 32.000 0.00 0.00 32.12 2.29
803 1211 6.947644 AAAGTAACCGTACAACCATTTTCT 57.052 33.333 0.00 0.00 32.12 2.52
804 1212 6.947644 AAGTAACCGTACAACCATTTTCTT 57.052 33.333 0.00 0.00 32.12 2.52
805 1213 6.308371 AGTAACCGTACAACCATTTTCTTG 57.692 37.500 0.00 0.00 32.12 3.02
806 1214 6.056884 AGTAACCGTACAACCATTTTCTTGA 58.943 36.000 0.00 0.00 32.12 3.02
807 1215 5.432885 AACCGTACAACCATTTTCTTGAG 57.567 39.130 0.00 0.00 0.00 3.02
808 1216 3.818773 ACCGTACAACCATTTTCTTGAGG 59.181 43.478 0.00 0.00 0.00 3.86
809 1217 3.190535 CCGTACAACCATTTTCTTGAGGG 59.809 47.826 0.00 0.00 0.00 4.30
810 1218 3.190535 CGTACAACCATTTTCTTGAGGGG 59.809 47.826 0.00 0.00 0.00 4.79
811 1219 1.970640 ACAACCATTTTCTTGAGGGGC 59.029 47.619 0.00 0.00 0.00 5.80
812 1220 2.250924 CAACCATTTTCTTGAGGGGCT 58.749 47.619 0.00 0.00 0.00 5.19
813 1221 3.181423 ACAACCATTTTCTTGAGGGGCTA 60.181 43.478 0.00 0.00 0.00 3.93
814 1222 3.087370 ACCATTTTCTTGAGGGGCTAC 57.913 47.619 0.00 0.00 0.00 3.58
815 1223 2.291605 ACCATTTTCTTGAGGGGCTACC 60.292 50.000 0.00 0.00 40.67 3.18
816 1224 2.017049 CATTTTCTTGAGGGGCTACCG 58.983 52.381 0.00 0.00 46.96 4.02
817 1225 1.061546 TTTTCTTGAGGGGCTACCGT 58.938 50.000 0.00 0.00 46.96 4.83
823 1231 0.106519 TGAGGGGCTACCGTACTACC 60.107 60.000 0.00 0.00 46.96 3.18
828 1237 2.560105 GGGGCTACCGTACTACCATTAG 59.440 54.545 0.00 0.00 37.78 1.73
850 1259 4.407296 AGAGCCCAATAGGTCTACAGAAAG 59.593 45.833 0.00 0.00 42.63 2.62
851 1260 4.362677 AGCCCAATAGGTCTACAGAAAGA 58.637 43.478 0.00 0.00 38.26 2.52
865 1274 8.567948 GTCTACAGAAAGATCATTCAAAACCAA 58.432 33.333 12.84 0.00 0.00 3.67
866 1275 9.300681 TCTACAGAAAGATCATTCAAAACCAAT 57.699 29.630 12.84 0.00 0.00 3.16
867 1276 9.918630 CTACAGAAAGATCATTCAAAACCAATT 57.081 29.630 12.84 0.00 0.00 2.32
868 1277 8.822652 ACAGAAAGATCATTCAAAACCAATTC 57.177 30.769 12.84 0.00 0.00 2.17
869 1278 7.596248 ACAGAAAGATCATTCAAAACCAATTCG 59.404 33.333 12.84 0.00 0.00 3.34
870 1279 7.062605 CAGAAAGATCATTCAAAACCAATTCGG 59.937 37.037 12.84 0.00 42.50 4.30
895 1322 3.612517 CGCAAGCTGAGCCCATATA 57.387 52.632 0.00 0.00 0.00 0.86
899 1326 3.683802 GCAAGCTGAGCCCATATAATCT 58.316 45.455 0.00 0.00 0.00 2.40
902 1329 5.296283 GCAAGCTGAGCCCATATAATCTATG 59.704 44.000 0.00 0.00 0.00 2.23
912 1339 5.163120 CCCATATAATCTATGCAGCCCATCT 60.163 44.000 0.00 0.00 35.34 2.90
1012 1444 2.420466 ATTTCCCGGCCCGAAACAGT 62.420 55.000 3.71 0.00 32.30 3.55
1036 1485 2.285977 GTCTCTCTCCTCCTCGTCTTC 58.714 57.143 0.00 0.00 0.00 2.87
1037 1486 1.134640 TCTCTCTCCTCCTCGTCTTCG 60.135 57.143 0.00 0.00 38.55 3.79
1038 1487 0.107606 TCTCTCCTCCTCGTCTTCGG 60.108 60.000 0.00 0.00 37.69 4.30
1039 1488 1.720694 CTCTCCTCCTCGTCTTCGGC 61.721 65.000 0.00 0.00 37.69 5.54
1040 1489 1.751162 CTCCTCCTCGTCTTCGGCT 60.751 63.158 0.00 0.00 37.69 5.52
1041 1490 1.999071 CTCCTCCTCGTCTTCGGCTG 61.999 65.000 0.00 0.00 37.69 4.85
1042 1491 2.202676 CTCCTCGTCTTCGGCTGC 60.203 66.667 0.00 0.00 37.69 5.25
1043 1492 2.676822 TCCTCGTCTTCGGCTGCT 60.677 61.111 0.00 0.00 37.69 4.24
1044 1493 2.507992 CCTCGTCTTCGGCTGCTG 60.508 66.667 0.95 0.95 37.69 4.41
1045 1494 3.184683 CTCGTCTTCGGCTGCTGC 61.185 66.667 7.10 7.10 37.69 5.25
1135 1596 4.924462 CGAGAAGGTCAAGAAAGAAGGTAC 59.076 45.833 0.00 0.00 0.00 3.34
1148 1609 0.544595 AAGGTACTCTTCACCCCGCT 60.545 55.000 0.00 0.00 38.49 5.52
1210 1671 0.031010 AAACCCTAGCCTCCCGATCT 60.031 55.000 0.00 0.00 0.00 2.75
1213 1674 0.968393 CCCTAGCCTCCCGATCTAGC 60.968 65.000 0.00 0.00 0.00 3.42
1215 1676 0.968393 CTAGCCTCCCGATCTAGCCC 60.968 65.000 0.00 0.00 0.00 5.19
1258 1719 5.394333 GCTTTTAGGTTCGTAGGATCTCTGT 60.394 44.000 0.00 0.00 0.00 3.41
1307 1772 1.616159 AGTGTTAAATGCTGGCCGTT 58.384 45.000 0.00 0.00 0.00 4.44
1341 1806 0.594110 TGCCCGATTTTGGTTTCGTC 59.406 50.000 0.00 0.00 33.60 4.20
1444 1909 4.021104 AGAGCTTTGAAGGGGCAAAATTAC 60.021 41.667 0.00 0.00 37.32 1.89
1455 1920 1.751351 GCAAAATTACTGCCTCCCTCC 59.249 52.381 1.77 0.00 33.51 4.30
1474 1939 7.506114 TCCCTCCACAGTACATATTTGTAATC 58.494 38.462 0.00 0.00 39.96 1.75
1475 1940 6.423905 CCCTCCACAGTACATATTTGTAATCG 59.576 42.308 0.00 0.00 39.96 3.34
1478 1943 5.049680 CCACAGTACATATTTGTAATCGCCC 60.050 44.000 0.00 0.00 39.96 6.13
1481 1946 5.179368 CAGTACATATTTGTAATCGCCCAGG 59.821 44.000 0.00 0.00 39.96 4.45
1496 1961 0.034059 CCAGGGAGCATGGTCGTATC 59.966 60.000 18.14 8.15 32.85 2.24
1510 1976 6.198650 TGGTCGTATCTGTCTAAAATCGAA 57.801 37.500 0.00 0.00 0.00 3.71
1679 2153 5.009610 TGTGGCCTTGAAAACTCATAAACTC 59.990 40.000 3.32 0.00 0.00 3.01
1727 2201 3.377172 GTGAAATTACAGCGGCTACCAAT 59.623 43.478 0.26 0.00 0.00 3.16
1751 2225 2.298661 CCGGGGCCTACAGGACTTT 61.299 63.158 0.84 0.00 44.77 2.66
2075 2569 4.424566 GGCTTGCCCATGTGTGCG 62.425 66.667 0.00 0.00 0.00 5.34
2317 2811 4.819105 TGGTGCTAGCATACACTACTTT 57.181 40.909 22.51 0.00 36.99 2.66
2843 3355 9.204337 TGCCCTGTTAGAACATATAACTACTTA 57.796 33.333 0.00 0.00 38.41 2.24
2865 3377 8.790718 ACTTATATGGAGATTAATGCTGCTTTG 58.209 33.333 10.66 0.00 0.00 2.77
3017 3531 2.009051 GGGTGCCTTTTATTTGCATGC 58.991 47.619 11.82 11.82 37.34 4.06
3041 3555 6.348622 GCTATCATTCTCAGCAATTGATCCAG 60.349 42.308 10.34 0.96 34.68 3.86
3193 3707 4.756642 TCACCACATCTGTTTTCTGATCAC 59.243 41.667 0.00 0.00 36.57 3.06
3194 3708 4.074970 ACCACATCTGTTTTCTGATCACC 58.925 43.478 0.00 0.00 36.57 4.02
3197 3711 3.331889 ACATCTGTTTTCTGATCACCCCT 59.668 43.478 0.00 0.00 36.57 4.79
3216 3730 3.779083 CCCTAGGCCCCTCCTCCA 61.779 72.222 2.05 0.00 43.20 3.86
3267 3781 5.027293 TCATACATGCTGCTGTCTATTGT 57.973 39.130 0.00 0.00 0.00 2.71
3279 3793 4.261572 GCTGTCTATTGTTTGTGCCAAAGA 60.262 41.667 1.21 0.00 0.00 2.52
3302 3816 1.581223 AAAAACCCCGGGGAAAAACA 58.419 45.000 46.68 0.00 38.96 2.83
3521 4035 2.532843 ACCATGCTTCTGCCAAGAATT 58.467 42.857 0.00 0.00 41.60 2.17
3542 4056 4.226427 TCTTGCTATCCATTCACTTGCT 57.774 40.909 0.00 0.00 0.00 3.91
3586 4100 1.187567 GGCCACCAAAGCATCCTGTT 61.188 55.000 0.00 0.00 0.00 3.16
3610 4124 3.562176 CCTTGGTTCCTGCCTCATTAGTT 60.562 47.826 0.00 0.00 0.00 2.24
3687 4201 1.005215 AGGCCACAGCTTAGAGCAATT 59.995 47.619 5.01 0.00 45.56 2.32
3829 4348 2.047830 GAAATACTCCCTCCGTCCCAT 58.952 52.381 0.00 0.00 0.00 4.00
3833 4352 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
3834 4353 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3835 4354 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3836 4355 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3838 4357 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3839 4358 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3840 4359 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3841 4360 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3842 4361 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3843 4362 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3844 4363 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3873 4392 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
3874 4393 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
3875 4394 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
3877 4396 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
3881 4442 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
3893 4454 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
3894 4455 5.187186 GCTCTTATATTATGGGACGGAGGAA 59.813 44.000 0.00 0.00 0.00 3.36
3895 4456 6.628398 GCTCTTATATTATGGGACGGAGGAAG 60.628 46.154 0.00 0.00 0.00 3.46
3896 4457 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
3897 4458 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
4093 4768 3.267860 GAGCAGAAGCCGCCATCG 61.268 66.667 0.00 0.00 43.56 3.84
4138 4816 3.771071 TCTAACCCAGTAACCCTAGCT 57.229 47.619 0.00 0.00 0.00 3.32
4294 5176 4.084328 GCGCTAAAGTGATCGCTAAATCAT 60.084 41.667 9.68 0.00 43.70 2.45
4545 5437 1.611851 CCAGAGAGGGAGTGCAGGT 60.612 63.158 0.00 0.00 0.00 4.00
4627 5519 2.125350 CAGCTTGAGGTCCTCCGC 60.125 66.667 16.60 17.44 39.05 5.54
4667 5567 8.478877 CACATTCAGTAACCTAGAACCTCTAAT 58.521 37.037 0.00 0.00 0.00 1.73
4693 5593 2.036958 TCGATGCCATTGTTACTGGG 57.963 50.000 0.00 0.00 34.16 4.45
4754 5654 3.110705 CTGGAGAGAAAAGGGATGGAGA 58.889 50.000 0.00 0.00 0.00 3.71
4788 5688 2.203280 TGTTGTTGGGTCCTGCCG 60.203 61.111 0.00 0.00 38.44 5.69
4883 5785 8.983702 AAGTATCTGGTAAAAACCAAGTTACA 57.016 30.769 0.00 0.00 39.61 2.41
5052 5954 6.609616 TCCCTACCACCCAAATGAATTTTATC 59.390 38.462 0.00 0.00 0.00 1.75
5117 6030 4.759516 TGTTTCAGAATTTTCGGTAGCC 57.240 40.909 0.00 0.00 0.00 3.93
5169 6582 2.102252 ACCGGTTTCCACTGTAACGTAA 59.898 45.455 0.00 0.00 0.00 3.18
5595 7009 7.421599 TGTTTAACCATGTTGTGTGTTATCTG 58.578 34.615 0.00 0.00 0.00 2.90
5684 7098 7.492669 AGTGATGTGTTTGTCTATGTAGTATGC 59.507 37.037 0.00 0.00 0.00 3.14
5831 7247 9.159470 GTCACTCGTTTTCTTTTCTATCAAAAG 57.841 33.333 1.12 1.12 38.30 2.27
5843 7259 9.450807 CTTTTCTATCAAAAGTTTCACGAACAT 57.549 29.630 0.00 0.00 40.84 2.71
6170 7593 1.003580 TGCTGCTTTCCCAACTCTAGG 59.996 52.381 0.00 0.00 0.00 3.02
6429 7852 1.277557 CTTGAGCTGGCTGGTCTACTT 59.722 52.381 21.49 0.00 43.13 2.24
6430 7853 0.610174 TGAGCTGGCTGGTCTACTTG 59.390 55.000 21.49 0.00 43.13 3.16
6431 7854 0.898320 GAGCTGGCTGGTCTACTTGA 59.102 55.000 15.22 0.00 39.86 3.02
6432 7855 0.901124 AGCTGGCTGGTCTACTTGAG 59.099 55.000 0.00 0.00 0.00 3.02
6496 7919 7.482169 AGTTGGAAGATAGTCTTGTCATACA 57.518 36.000 0.00 0.00 36.73 2.29
6569 7992 1.443802 GTGAGCACTCTGCCTTTACC 58.556 55.000 0.00 0.00 46.52 2.85
6584 8007 4.501058 GCCTTTACCGACCTAATCCTACAG 60.501 50.000 0.00 0.00 0.00 2.74
6790 8214 4.094294 TGAGATTAACATTTAGCGGTGCAC 59.906 41.667 8.80 8.80 0.00 4.57
6952 8376 1.221566 CATGCCGGATCAGACCACA 59.778 57.895 5.05 0.00 0.00 4.17
7145 8570 4.576873 TCTCATACGCCAAAAAGTGAAACA 59.423 37.500 0.00 0.00 41.43 2.83
7146 8571 5.066634 TCTCATACGCCAAAAAGTGAAACAA 59.933 36.000 0.00 0.00 41.43 2.83
7271 8696 6.043938 ACCCTGTATTTCTTGGAAGTGACTTA 59.956 38.462 0.00 0.00 0.00 2.24
7343 8769 4.315803 CTCTACGTTTTCATGTGAACCCT 58.684 43.478 0.00 0.00 33.13 4.34
8014 9464 0.684535 GTGGGGTTGGGGAATTTGTG 59.315 55.000 0.00 0.00 0.00 3.33
8089 9539 1.630244 GCCTACTGCGCTTGTGAGTG 61.630 60.000 9.73 0.00 36.46 3.51
8177 9630 1.156736 GACCGTTGTCTGGTTGGATG 58.843 55.000 0.00 0.00 40.63 3.51
8178 9631 0.889186 ACCGTTGTCTGGTTGGATGC 60.889 55.000 0.00 0.00 35.82 3.91
8200 9653 4.503991 GCGGATGTCCTTCCTGATTCTTAT 60.504 45.833 0.00 0.00 33.30 1.73
8212 9665 9.359653 CTTCCTGATTCTTATGGGATTAAACAT 57.640 33.333 0.00 0.00 0.00 2.71
8260 9715 1.153745 CACGGAGTAGGAGCTGTGC 60.154 63.158 0.00 0.00 41.61 4.57
8270 9725 4.697352 AGTAGGAGCTGTGCAAGTAAATTG 59.303 41.667 0.00 0.00 42.20 2.32
8282 9737 5.194199 CAAGTAAATTGCAAATGCGAAGG 57.806 39.130 1.71 0.00 45.83 3.46
8283 9738 4.519540 AGTAAATTGCAAATGCGAAGGT 57.480 36.364 1.71 0.00 45.83 3.50
8284 9739 4.236935 AGTAAATTGCAAATGCGAAGGTG 58.763 39.130 1.71 0.00 45.83 4.00
8285 9740 1.431496 AATTGCAAATGCGAAGGTGC 58.569 45.000 1.71 0.00 45.83 5.01
8286 9741 0.604578 ATTGCAAATGCGAAGGTGCT 59.395 45.000 1.71 0.00 45.83 4.40
8287 9742 0.039256 TTGCAAATGCGAAGGTGCTC 60.039 50.000 0.00 0.00 45.83 4.26
8288 9743 1.171549 TGCAAATGCGAAGGTGCTCA 61.172 50.000 0.35 0.00 45.83 4.26
8289 9744 0.171903 GCAAATGCGAAGGTGCTCAT 59.828 50.000 0.00 0.00 34.13 2.90
8290 9745 1.904144 CAAATGCGAAGGTGCTCATG 58.096 50.000 0.00 0.00 35.36 3.07
8291 9746 0.813184 AAATGCGAAGGTGCTCATGG 59.187 50.000 0.00 0.00 35.36 3.66
8292 9747 1.033746 AATGCGAAGGTGCTCATGGG 61.034 55.000 0.00 0.00 35.36 4.00
8293 9748 1.913951 ATGCGAAGGTGCTCATGGGA 61.914 55.000 0.00 0.00 35.36 4.37
8294 9749 1.377202 GCGAAGGTGCTCATGGGAA 60.377 57.895 0.00 0.00 0.00 3.97
8295 9750 1.372087 GCGAAGGTGCTCATGGGAAG 61.372 60.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.268899 CTTACTCGAGTGTGAACGGGT 59.731 52.381 28.12 0.00 45.25 5.28
39 43 2.956194 CATCGCCAACAAGCAGCA 59.044 55.556 0.00 0.00 0.00 4.41
55 59 2.260869 GCTGAAGTTCCAAGCGGCA 61.261 57.895 1.45 0.00 33.01 5.69
59 63 1.208614 CGCAGCTGAAGTTCCAAGC 59.791 57.895 20.43 7.03 0.00 4.01
84 88 0.747852 GGCCACTTTTCCCAAACGAA 59.252 50.000 0.00 0.00 0.00 3.85
85 89 1.448922 CGGCCACTTTTCCCAAACGA 61.449 55.000 2.24 0.00 0.00 3.85
86 90 1.007849 CGGCCACTTTTCCCAAACG 60.008 57.895 2.24 0.00 0.00 3.60
87 91 1.300620 GCGGCCACTTTTCCCAAAC 60.301 57.895 2.24 0.00 0.00 2.93
89 93 3.291383 CGCGGCCACTTTTCCCAA 61.291 61.111 2.24 0.00 0.00 4.12
90 94 3.561120 ATCGCGGCCACTTTTCCCA 62.561 57.895 6.13 0.00 0.00 4.37
93 97 1.298859 ACAGATCGCGGCCACTTTTC 61.299 55.000 6.13 0.00 0.00 2.29
110 114 7.009815 CACGTTTACTCTGTCAAAAGTTCTACA 59.990 37.037 0.00 0.00 0.00 2.74
113 117 6.103997 TCACGTTTACTCTGTCAAAAGTTCT 58.896 36.000 0.00 0.00 0.00 3.01
114 118 6.340537 TCACGTTTACTCTGTCAAAAGTTC 57.659 37.500 0.00 0.00 0.00 3.01
160 164 4.106925 GCAGTGGGCCTCTGGGAG 62.107 72.222 30.66 11.25 36.11 4.30
170 174 4.758251 TCCATGACGCGCAGTGGG 62.758 66.667 19.84 14.71 45.78 4.61
171 175 2.512286 ATCCATGACGCGCAGTGG 60.512 61.111 5.73 12.20 45.78 4.00
173 177 2.102438 CACATCCATGACGCGCAGT 61.102 57.895 5.73 6.37 0.00 4.40
174 178 1.759293 CTCACATCCATGACGCGCAG 61.759 60.000 5.73 2.42 0.00 5.18
175 179 1.810853 CTCACATCCATGACGCGCA 60.811 57.895 5.73 5.73 0.00 6.09
176 180 0.877649 ATCTCACATCCATGACGCGC 60.878 55.000 5.73 0.00 0.00 6.86
177 181 1.575244 AATCTCACATCCATGACGCG 58.425 50.000 3.53 3.53 0.00 6.01
178 182 3.722147 AGTAATCTCACATCCATGACGC 58.278 45.455 0.00 0.00 0.00 5.19
179 183 6.739112 TCTAAGTAATCTCACATCCATGACG 58.261 40.000 0.00 0.00 0.00 4.35
180 184 7.151308 CCTCTAAGTAATCTCACATCCATGAC 58.849 42.308 0.00 0.00 0.00 3.06
181 185 6.268617 CCCTCTAAGTAATCTCACATCCATGA 59.731 42.308 0.00 0.00 0.00 3.07
182 186 6.042552 ACCCTCTAAGTAATCTCACATCCATG 59.957 42.308 0.00 0.00 0.00 3.66
188 192 6.042781 ACAAACACCCTCTAAGTAATCTCACA 59.957 38.462 0.00 0.00 0.00 3.58
189 193 6.465084 ACAAACACCCTCTAAGTAATCTCAC 58.535 40.000 0.00 0.00 0.00 3.51
205 209 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
206 210 5.508994 CCAATAAGTCCCTGGAAACAAACAC 60.509 44.000 0.00 0.00 42.06 3.32
207 211 4.586841 CCAATAAGTCCCTGGAAACAAACA 59.413 41.667 0.00 0.00 42.06 2.83
208 212 4.587262 ACCAATAAGTCCCTGGAAACAAAC 59.413 41.667 0.00 0.00 42.06 2.93
209 213 4.810345 ACCAATAAGTCCCTGGAAACAAA 58.190 39.130 0.00 0.00 42.06 2.83
210 214 4.463050 ACCAATAAGTCCCTGGAAACAA 57.537 40.909 0.00 0.00 42.06 2.83
211 215 4.463050 AACCAATAAGTCCCTGGAAACA 57.537 40.909 0.00 0.00 39.59 2.83
212 216 5.417894 CCTAAACCAATAAGTCCCTGGAAAC 59.582 44.000 0.00 0.00 34.16 2.78
213 217 5.517655 CCCTAAACCAATAAGTCCCTGGAAA 60.518 44.000 0.00 0.00 34.16 3.13
214 218 4.017867 CCCTAAACCAATAAGTCCCTGGAA 60.018 45.833 0.00 0.00 34.16 3.53
215 219 3.526019 CCCTAAACCAATAAGTCCCTGGA 59.474 47.826 0.00 0.00 34.16 3.86
216 220 3.526019 TCCCTAAACCAATAAGTCCCTGG 59.474 47.826 0.00 0.00 36.24 4.45
217 221 4.227527 AGTCCCTAAACCAATAAGTCCCTG 59.772 45.833 0.00 0.00 0.00 4.45
218 222 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
219 223 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
220 224 8.640063 TTTTAAGTCCCTAAACCAATAAGTCC 57.360 34.615 0.00 0.00 0.00 3.85
243 247 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
244 248 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
245 249 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
246 250 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
247 251 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
248 252 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
249 253 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
250 254 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
251 255 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
252 256 8.265055 TCTGTTTGGTTTAGATGGGACTTATAG 58.735 37.037 0.00 0.00 0.00 1.31
253 257 8.153221 TCTGTTTGGTTTAGATGGGACTTATA 57.847 34.615 0.00 0.00 0.00 0.98
254 258 7.027874 TCTGTTTGGTTTAGATGGGACTTAT 57.972 36.000 0.00 0.00 0.00 1.73
255 259 6.442541 TCTGTTTGGTTTAGATGGGACTTA 57.557 37.500 0.00 0.00 0.00 2.24
256 260 5.319043 TCTGTTTGGTTTAGATGGGACTT 57.681 39.130 0.00 0.00 0.00 3.01
257 261 4.993705 TCTGTTTGGTTTAGATGGGACT 57.006 40.909 0.00 0.00 0.00 3.85
258 262 4.459337 CCTTCTGTTTGGTTTAGATGGGAC 59.541 45.833 0.00 0.00 34.09 4.46
259 263 4.662278 CCTTCTGTTTGGTTTAGATGGGA 58.338 43.478 0.00 0.00 34.09 4.37
260 264 3.763897 CCCTTCTGTTTGGTTTAGATGGG 59.236 47.826 9.24 9.24 44.49 4.00
261 265 3.193479 GCCCTTCTGTTTGGTTTAGATGG 59.807 47.826 0.00 0.00 36.22 3.51
262 266 3.193479 GGCCCTTCTGTTTGGTTTAGATG 59.807 47.826 0.00 0.00 0.00 2.90
263 267 3.076032 AGGCCCTTCTGTTTGGTTTAGAT 59.924 43.478 0.00 0.00 0.00 1.98
264 268 2.445525 AGGCCCTTCTGTTTGGTTTAGA 59.554 45.455 0.00 0.00 0.00 2.10
265 269 2.876581 AGGCCCTTCTGTTTGGTTTAG 58.123 47.619 0.00 0.00 0.00 1.85
266 270 3.322191 AAGGCCCTTCTGTTTGGTTTA 57.678 42.857 0.00 0.00 0.00 2.01
267 271 2.174685 AAGGCCCTTCTGTTTGGTTT 57.825 45.000 0.00 0.00 0.00 3.27
268 272 3.542969 ATAAGGCCCTTCTGTTTGGTT 57.457 42.857 0.00 0.00 0.00 3.67
269 273 3.053619 CCTATAAGGCCCTTCTGTTTGGT 60.054 47.826 0.00 0.00 0.00 3.67
270 274 3.555966 CCTATAAGGCCCTTCTGTTTGG 58.444 50.000 0.00 0.00 0.00 3.28
271 275 3.202151 TCCCTATAAGGCCCTTCTGTTTG 59.798 47.826 0.00 0.00 32.73 2.93
272 276 3.470868 TCCCTATAAGGCCCTTCTGTTT 58.529 45.455 0.00 0.00 32.73 2.83
273 277 3.145559 TCCCTATAAGGCCCTTCTGTT 57.854 47.619 0.00 0.00 32.73 3.16
274 278 2.889522 TCCCTATAAGGCCCTTCTGT 57.110 50.000 0.00 0.00 32.73 3.41
275 279 4.731313 AAATCCCTATAAGGCCCTTCTG 57.269 45.455 0.00 0.00 32.73 3.02
276 280 6.393141 AGTTTAAATCCCTATAAGGCCCTTCT 59.607 38.462 0.00 0.00 32.73 2.85
277 281 6.490381 CAGTTTAAATCCCTATAAGGCCCTTC 59.510 42.308 0.00 0.00 32.73 3.46
278 282 6.373759 CAGTTTAAATCCCTATAAGGCCCTT 58.626 40.000 0.00 0.00 32.73 3.95
279 283 5.162980 CCAGTTTAAATCCCTATAAGGCCCT 60.163 44.000 0.00 0.00 32.73 5.19
280 284 5.077564 CCAGTTTAAATCCCTATAAGGCCC 58.922 45.833 0.00 0.00 32.73 5.80
281 285 5.077564 CCCAGTTTAAATCCCTATAAGGCC 58.922 45.833 0.00 0.00 32.73 5.19
282 286 4.523173 GCCCAGTTTAAATCCCTATAAGGC 59.477 45.833 0.00 0.00 32.73 4.35
283 287 5.701224 TGCCCAGTTTAAATCCCTATAAGG 58.299 41.667 0.00 0.00 34.30 2.69
284 288 7.839680 AATGCCCAGTTTAAATCCCTATAAG 57.160 36.000 0.00 0.00 0.00 1.73
285 289 7.841729 TCAAATGCCCAGTTTAAATCCCTATAA 59.158 33.333 0.00 0.00 0.00 0.98
286 290 7.358263 TCAAATGCCCAGTTTAAATCCCTATA 58.642 34.615 0.00 0.00 0.00 1.31
287 291 6.201591 TCAAATGCCCAGTTTAAATCCCTAT 58.798 36.000 0.00 0.00 0.00 2.57
288 292 5.584913 TCAAATGCCCAGTTTAAATCCCTA 58.415 37.500 0.00 0.00 0.00 3.53
289 293 4.424842 TCAAATGCCCAGTTTAAATCCCT 58.575 39.130 0.00 0.00 0.00 4.20
290 294 4.466015 TCTCAAATGCCCAGTTTAAATCCC 59.534 41.667 0.00 0.00 0.00 3.85
291 295 5.185828 AGTCTCAAATGCCCAGTTTAAATCC 59.814 40.000 0.00 0.00 0.00 3.01
292 296 6.272822 AGTCTCAAATGCCCAGTTTAAATC 57.727 37.500 0.00 0.00 0.00 2.17
293 297 6.670695 AAGTCTCAAATGCCCAGTTTAAAT 57.329 33.333 0.00 0.00 0.00 1.40
294 298 7.450014 TCATAAGTCTCAAATGCCCAGTTTAAA 59.550 33.333 0.00 0.00 0.00 1.52
295 299 6.945435 TCATAAGTCTCAAATGCCCAGTTTAA 59.055 34.615 0.00 0.00 0.00 1.52
296 300 6.480763 TCATAAGTCTCAAATGCCCAGTTTA 58.519 36.000 0.00 0.00 0.00 2.01
297 301 5.324409 TCATAAGTCTCAAATGCCCAGTTT 58.676 37.500 0.00 0.00 0.00 2.66
298 302 4.922206 TCATAAGTCTCAAATGCCCAGTT 58.078 39.130 0.00 0.00 0.00 3.16
299 303 4.574674 TCATAAGTCTCAAATGCCCAGT 57.425 40.909 0.00 0.00 0.00 4.00
300 304 5.902613 TTTCATAAGTCTCAAATGCCCAG 57.097 39.130 0.00 0.00 0.00 4.45
301 305 7.833682 TCTTATTTCATAAGTCTCAAATGCCCA 59.166 33.333 3.93 0.00 42.21 5.36
302 306 8.131731 GTCTTATTTCATAAGTCTCAAATGCCC 58.868 37.037 3.93 0.00 42.21 5.36
303 307 8.897752 AGTCTTATTTCATAAGTCTCAAATGCC 58.102 33.333 3.93 0.00 42.21 4.40
357 361 9.396022 CATGGACTAAAAGACCATATTACAACT 57.604 33.333 9.96 0.00 46.31 3.16
358 362 9.174166 ACATGGACTAAAAGACCATATTACAAC 57.826 33.333 9.96 0.00 46.31 3.32
359 363 9.747898 AACATGGACTAAAAGACCATATTACAA 57.252 29.630 9.96 0.00 46.31 2.41
363 367 9.975218 ACTTAACATGGACTAAAAGACCATATT 57.025 29.630 9.96 8.42 46.31 1.28
364 368 9.614792 GACTTAACATGGACTAAAAGACCATAT 57.385 33.333 9.96 6.06 46.31 1.78
365 369 8.044908 GGACTTAACATGGACTAAAAGACCATA 58.955 37.037 9.96 0.00 46.31 2.74
367 371 6.183361 TGGACTTAACATGGACTAAAAGACCA 60.183 38.462 0.00 0.74 43.65 4.02
368 372 6.235664 TGGACTTAACATGGACTAAAAGACC 58.764 40.000 0.00 2.30 32.02 3.85
369 373 6.371825 CCTGGACTTAACATGGACTAAAAGAC 59.628 42.308 0.00 0.00 0.00 3.01
370 374 6.271391 TCCTGGACTTAACATGGACTAAAAGA 59.729 38.462 0.00 0.00 0.00 2.52
371 375 6.472887 TCCTGGACTTAACATGGACTAAAAG 58.527 40.000 0.00 0.00 0.00 2.27
372 376 6.442541 TCCTGGACTTAACATGGACTAAAA 57.557 37.500 0.00 0.00 0.00 1.52
373 377 6.235664 GTTCCTGGACTTAACATGGACTAAA 58.764 40.000 0.00 0.00 0.00 1.85
374 378 5.280317 GGTTCCTGGACTTAACATGGACTAA 60.280 44.000 0.00 0.00 0.00 2.24
375 379 4.224370 GGTTCCTGGACTTAACATGGACTA 59.776 45.833 0.00 0.00 0.00 2.59
376 380 3.009143 GGTTCCTGGACTTAACATGGACT 59.991 47.826 0.00 0.00 0.00 3.85
377 381 3.244770 TGGTTCCTGGACTTAACATGGAC 60.245 47.826 0.00 0.00 0.00 4.02
378 382 2.983192 TGGTTCCTGGACTTAACATGGA 59.017 45.455 0.00 0.00 0.00 3.41
379 383 3.433306 TGGTTCCTGGACTTAACATGG 57.567 47.619 0.00 0.00 0.00 3.66
380 384 4.582656 TGTTTGGTTCCTGGACTTAACATG 59.417 41.667 0.00 0.00 0.00 3.21
381 385 4.798882 TGTTTGGTTCCTGGACTTAACAT 58.201 39.130 0.00 0.00 0.00 2.71
382 386 4.080243 TCTGTTTGGTTCCTGGACTTAACA 60.080 41.667 0.00 4.49 0.00 2.41
383 387 4.457466 TCTGTTTGGTTCCTGGACTTAAC 58.543 43.478 0.00 0.00 0.00 2.01
384 388 4.781775 TCTGTTTGGTTCCTGGACTTAA 57.218 40.909 0.00 0.00 0.00 1.85
385 389 4.993705 ATCTGTTTGGTTCCTGGACTTA 57.006 40.909 0.00 0.00 0.00 2.24
386 390 3.884037 ATCTGTTTGGTTCCTGGACTT 57.116 42.857 0.00 0.00 0.00 3.01
387 391 4.263506 CCTTATCTGTTTGGTTCCTGGACT 60.264 45.833 0.00 0.00 0.00 3.85
388 392 4.010349 CCTTATCTGTTTGGTTCCTGGAC 58.990 47.826 0.00 0.00 0.00 4.02
389 393 3.913799 TCCTTATCTGTTTGGTTCCTGGA 59.086 43.478 0.00 0.00 0.00 3.86
390 394 4.010349 GTCCTTATCTGTTTGGTTCCTGG 58.990 47.826 0.00 0.00 0.00 4.45
391 395 4.911390 AGTCCTTATCTGTTTGGTTCCTG 58.089 43.478 0.00 0.00 0.00 3.86
392 396 5.584551 AAGTCCTTATCTGTTTGGTTCCT 57.415 39.130 0.00 0.00 0.00 3.36
393 397 6.650427 AAAAGTCCTTATCTGTTTGGTTCC 57.350 37.500 0.00 0.00 0.00 3.62
394 398 8.297426 CCTAAAAAGTCCTTATCTGTTTGGTTC 58.703 37.037 0.00 0.00 0.00 3.62
395 399 7.232737 CCCTAAAAAGTCCTTATCTGTTTGGTT 59.767 37.037 0.00 0.00 0.00 3.67
396 400 6.719829 CCCTAAAAAGTCCTTATCTGTTTGGT 59.280 38.462 0.00 0.00 0.00 3.67
397 401 6.946009 TCCCTAAAAAGTCCTTATCTGTTTGG 59.054 38.462 0.00 0.00 0.00 3.28
398 402 7.094334 GGTCCCTAAAAAGTCCTTATCTGTTTG 60.094 40.741 0.00 0.00 0.00 2.93
399 403 6.946583 GGTCCCTAAAAAGTCCTTATCTGTTT 59.053 38.462 0.00 0.00 0.00 2.83
400 404 6.274908 AGGTCCCTAAAAAGTCCTTATCTGTT 59.725 38.462 0.00 0.00 0.00 3.16
401 405 5.791141 AGGTCCCTAAAAAGTCCTTATCTGT 59.209 40.000 0.00 0.00 0.00 3.41
402 406 6.116126 CAGGTCCCTAAAAAGTCCTTATCTG 58.884 44.000 0.00 0.00 0.00 2.90
403 407 5.191921 CCAGGTCCCTAAAAAGTCCTTATCT 59.808 44.000 0.00 0.00 0.00 1.98
404 408 5.437946 CCAGGTCCCTAAAAAGTCCTTATC 58.562 45.833 0.00 0.00 0.00 1.75
405 409 4.229812 CCCAGGTCCCTAAAAAGTCCTTAT 59.770 45.833 0.00 0.00 0.00 1.73
406 410 3.590182 CCCAGGTCCCTAAAAAGTCCTTA 59.410 47.826 0.00 0.00 0.00 2.69
407 411 2.378886 CCCAGGTCCCTAAAAAGTCCTT 59.621 50.000 0.00 0.00 0.00 3.36
408 412 1.993301 CCCAGGTCCCTAAAAAGTCCT 59.007 52.381 0.00 0.00 0.00 3.85
409 413 1.990327 TCCCAGGTCCCTAAAAAGTCC 59.010 52.381 0.00 0.00 0.00 3.85
410 414 2.643304 AGTCCCAGGTCCCTAAAAAGTC 59.357 50.000 0.00 0.00 0.00 3.01
411 415 2.643304 GAGTCCCAGGTCCCTAAAAAGT 59.357 50.000 0.00 0.00 0.00 2.66
412 416 2.642807 TGAGTCCCAGGTCCCTAAAAAG 59.357 50.000 0.00 0.00 0.00 2.27
413 417 2.708759 TGAGTCCCAGGTCCCTAAAAA 58.291 47.619 0.00 0.00 0.00 1.94
414 418 2.426431 TGAGTCCCAGGTCCCTAAAA 57.574 50.000 0.00 0.00 0.00 1.52
415 419 2.661176 ATGAGTCCCAGGTCCCTAAA 57.339 50.000 0.00 0.00 0.00 1.85
416 420 3.013648 ACTTATGAGTCCCAGGTCCCTAA 59.986 47.826 0.00 0.00 0.00 2.69
417 421 2.590611 ACTTATGAGTCCCAGGTCCCTA 59.409 50.000 0.00 0.00 0.00 3.53
418 422 1.366435 ACTTATGAGTCCCAGGTCCCT 59.634 52.381 0.00 0.00 0.00 4.20
419 423 1.880941 ACTTATGAGTCCCAGGTCCC 58.119 55.000 0.00 0.00 0.00 4.46
420 424 2.092914 CCAACTTATGAGTCCCAGGTCC 60.093 54.545 0.00 0.00 34.21 4.46
421 425 2.092914 CCCAACTTATGAGTCCCAGGTC 60.093 54.545 0.00 0.00 34.21 3.85
422 426 1.916181 CCCAACTTATGAGTCCCAGGT 59.084 52.381 0.00 0.00 34.21 4.00
423 427 2.092914 GTCCCAACTTATGAGTCCCAGG 60.093 54.545 0.00 0.00 34.21 4.45
424 428 2.840651 AGTCCCAACTTATGAGTCCCAG 59.159 50.000 0.00 0.00 34.21 4.45
425 429 2.915869 AGTCCCAACTTATGAGTCCCA 58.084 47.619 0.00 0.00 34.21 4.37
426 430 5.431179 TTTAGTCCCAACTTATGAGTCCC 57.569 43.478 0.00 0.00 36.92 4.46
449 453 8.803235 GTTTGGTTCATAAGTCCTAGGATTTTT 58.197 33.333 23.08 13.64 0.00 1.94
450 454 7.947890 TGTTTGGTTCATAAGTCCTAGGATTTT 59.052 33.333 23.08 18.00 0.00 1.82
451 455 7.466804 TGTTTGGTTCATAAGTCCTAGGATTT 58.533 34.615 21.80 21.80 0.00 2.17
452 456 7.027874 TGTTTGGTTCATAAGTCCTAGGATT 57.972 36.000 16.27 8.10 0.00 3.01
453 457 6.353082 CCTGTTTGGTTCATAAGTCCTAGGAT 60.353 42.308 16.27 1.82 0.00 3.24
454 458 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
455 459 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
456 460 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
457 461 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
458 462 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
459 463 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
460 464 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
461 465 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
462 466 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
463 467 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
464 468 2.990740 AAGGCCCTGTTTGGTTCATA 57.009 45.000 0.00 0.00 0.00 2.15
465 469 2.990740 TAAGGCCCTGTTTGGTTCAT 57.009 45.000 0.00 0.00 0.00 2.57
466 470 2.757894 TTAAGGCCCTGTTTGGTTCA 57.242 45.000 0.00 0.00 0.00 3.18
467 471 2.288825 GCTTTAAGGCCCTGTTTGGTTC 60.289 50.000 0.00 0.00 0.00 3.62
468 472 1.691976 GCTTTAAGGCCCTGTTTGGTT 59.308 47.619 0.00 0.00 0.00 3.67
469 473 1.338107 GCTTTAAGGCCCTGTTTGGT 58.662 50.000 0.00 0.00 0.00 3.67
470 474 1.273327 CTGCTTTAAGGCCCTGTTTGG 59.727 52.381 7.15 0.00 0.00 3.28
471 475 1.963515 ACTGCTTTAAGGCCCTGTTTG 59.036 47.619 7.15 0.00 0.00 2.93
472 476 1.963515 CACTGCTTTAAGGCCCTGTTT 59.036 47.619 7.15 0.00 0.00 2.83
473 477 1.144913 TCACTGCTTTAAGGCCCTGTT 59.855 47.619 7.15 0.00 0.00 3.16
474 478 0.771127 TCACTGCTTTAAGGCCCTGT 59.229 50.000 7.15 1.00 0.00 4.00
475 479 1.457346 CTCACTGCTTTAAGGCCCTG 58.543 55.000 7.15 2.45 0.00 4.45
476 480 0.329596 CCTCACTGCTTTAAGGCCCT 59.670 55.000 7.15 0.00 0.00 5.19
477 481 0.038310 ACCTCACTGCTTTAAGGCCC 59.962 55.000 7.15 0.00 31.79 5.80
478 482 1.911057 AACCTCACTGCTTTAAGGCC 58.089 50.000 7.15 0.00 31.79 5.19
479 483 3.190744 GGTAAACCTCACTGCTTTAAGGC 59.809 47.826 1.97 1.97 31.79 4.35
480 484 4.455877 CAGGTAAACCTCACTGCTTTAAGG 59.544 45.833 0.00 0.00 46.65 2.69
481 485 4.455877 CCAGGTAAACCTCACTGCTTTAAG 59.544 45.833 0.00 0.00 46.65 1.85
482 486 4.141344 ACCAGGTAAACCTCACTGCTTTAA 60.141 41.667 0.00 0.00 46.65 1.52
483 487 3.393278 ACCAGGTAAACCTCACTGCTTTA 59.607 43.478 0.00 0.00 46.65 1.85
484 488 2.174854 ACCAGGTAAACCTCACTGCTTT 59.825 45.455 0.00 0.00 46.65 3.51
485 489 1.774856 ACCAGGTAAACCTCACTGCTT 59.225 47.619 0.00 0.00 46.65 3.91
486 490 1.348036 GACCAGGTAAACCTCACTGCT 59.652 52.381 0.00 0.00 46.65 4.24
487 491 1.348036 AGACCAGGTAAACCTCACTGC 59.652 52.381 0.00 0.00 46.65 4.40
488 492 3.771577 AAGACCAGGTAAACCTCACTG 57.228 47.619 0.00 0.00 46.65 3.66
489 493 3.581770 GGTAAGACCAGGTAAACCTCACT 59.418 47.826 0.00 0.00 46.65 3.41
490 494 3.325716 TGGTAAGACCAGGTAAACCTCAC 59.674 47.826 15.39 0.00 44.79 3.51
491 495 3.589641 TGGTAAGACCAGGTAAACCTCA 58.410 45.455 15.39 0.00 44.79 3.86
523 527 2.421751 TCCAAGTTCCAACGGAAACA 57.578 45.000 0.00 0.00 43.86 2.83
535 539 5.105351 CCTCACTTTTGAAAGGTTCCAAGTT 60.105 40.000 8.23 0.00 40.31 2.66
537 541 4.644685 TCCTCACTTTTGAAAGGTTCCAAG 59.355 41.667 8.23 0.00 40.31 3.61
538 542 4.605183 TCCTCACTTTTGAAAGGTTCCAA 58.395 39.130 8.23 0.00 40.31 3.53
539 543 4.243793 TCCTCACTTTTGAAAGGTTCCA 57.756 40.909 8.23 0.00 40.31 3.53
540 544 5.791336 ATTCCTCACTTTTGAAAGGTTCC 57.209 39.130 8.23 0.00 40.31 3.62
541 545 8.166422 TCTAATTCCTCACTTTTGAAAGGTTC 57.834 34.615 8.23 0.00 40.31 3.62
595 599 8.598041 GGTCCATCATCTACTTTTATACCTCAT 58.402 37.037 0.00 0.00 0.00 2.90
596 600 7.567250 TGGTCCATCATCTACTTTTATACCTCA 59.433 37.037 0.00 0.00 0.00 3.86
677 1084 5.588648 TGCCCCAAAAGAAAGAATCTATACG 59.411 40.000 0.00 0.00 37.42 3.06
742 1150 4.377897 GTGGTACTGTTACTTTGCTCTGT 58.622 43.478 0.00 0.00 0.00 3.41
747 1155 4.069304 TGATGGTGGTACTGTTACTTTGC 58.931 43.478 0.00 0.00 0.00 3.68
778 1186 7.774134 AGAAAATGGTTGTACGGTTACTTTTT 58.226 30.769 0.00 0.00 0.00 1.94
779 1187 7.337480 AGAAAATGGTTGTACGGTTACTTTT 57.663 32.000 0.00 0.00 0.00 2.27
780 1188 6.947644 AGAAAATGGTTGTACGGTTACTTT 57.052 33.333 0.00 0.00 0.00 2.66
781 1189 6.543100 TCAAGAAAATGGTTGTACGGTTACTT 59.457 34.615 0.00 0.00 0.00 2.24
782 1190 6.056884 TCAAGAAAATGGTTGTACGGTTACT 58.943 36.000 0.00 0.00 0.00 2.24
783 1191 6.303021 TCAAGAAAATGGTTGTACGGTTAC 57.697 37.500 0.00 0.00 0.00 2.50
784 1192 5.470777 CCTCAAGAAAATGGTTGTACGGTTA 59.529 40.000 0.00 0.00 0.00 2.85
785 1193 4.277423 CCTCAAGAAAATGGTTGTACGGTT 59.723 41.667 0.00 0.00 0.00 4.44
786 1194 3.818773 CCTCAAGAAAATGGTTGTACGGT 59.181 43.478 0.00 0.00 0.00 4.83
787 1195 3.190535 CCCTCAAGAAAATGGTTGTACGG 59.809 47.826 0.00 0.00 0.00 4.02
788 1196 3.190535 CCCCTCAAGAAAATGGTTGTACG 59.809 47.826 0.00 0.00 0.00 3.67
789 1197 3.056821 GCCCCTCAAGAAAATGGTTGTAC 60.057 47.826 0.00 0.00 0.00 2.90
790 1198 3.161866 GCCCCTCAAGAAAATGGTTGTA 58.838 45.455 0.00 0.00 0.00 2.41
791 1199 1.970640 GCCCCTCAAGAAAATGGTTGT 59.029 47.619 0.00 0.00 0.00 3.32
792 1200 2.250924 AGCCCCTCAAGAAAATGGTTG 58.749 47.619 0.00 0.00 0.00 3.77
793 1201 2.702270 AGCCCCTCAAGAAAATGGTT 57.298 45.000 0.00 0.00 0.00 3.67
794 1202 2.291605 GGTAGCCCCTCAAGAAAATGGT 60.292 50.000 0.00 0.00 0.00 3.55
795 1203 2.379005 GGTAGCCCCTCAAGAAAATGG 58.621 52.381 0.00 0.00 0.00 3.16
796 1204 2.017049 CGGTAGCCCCTCAAGAAAATG 58.983 52.381 0.00 0.00 0.00 2.32
797 1205 1.633945 ACGGTAGCCCCTCAAGAAAAT 59.366 47.619 0.00 0.00 0.00 1.82
798 1206 1.061546 ACGGTAGCCCCTCAAGAAAA 58.938 50.000 0.00 0.00 0.00 2.29
799 1207 1.551883 GTACGGTAGCCCCTCAAGAAA 59.448 52.381 0.00 0.00 0.00 2.52
800 1208 1.188863 GTACGGTAGCCCCTCAAGAA 58.811 55.000 0.00 0.00 0.00 2.52
801 1209 0.333993 AGTACGGTAGCCCCTCAAGA 59.666 55.000 0.00 0.00 0.00 3.02
802 1210 1.680207 GTAGTACGGTAGCCCCTCAAG 59.320 57.143 0.00 0.00 0.00 3.02
803 1211 1.686115 GGTAGTACGGTAGCCCCTCAA 60.686 57.143 0.00 0.00 0.00 3.02
804 1212 0.106519 GGTAGTACGGTAGCCCCTCA 60.107 60.000 0.00 0.00 0.00 3.86
805 1213 0.106519 TGGTAGTACGGTAGCCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
806 1214 0.559699 ATGGTAGTACGGTAGCCCCT 59.440 55.000 0.00 0.00 0.00 4.79
807 1215 1.417288 AATGGTAGTACGGTAGCCCC 58.583 55.000 0.00 0.00 0.00 5.80
808 1216 3.490348 TCTAATGGTAGTACGGTAGCCC 58.510 50.000 0.00 0.00 0.00 5.19
809 1217 3.057666 GCTCTAATGGTAGTACGGTAGCC 60.058 52.174 0.00 0.00 0.00 3.93
810 1218 3.057666 GGCTCTAATGGTAGTACGGTAGC 60.058 52.174 0.00 0.00 0.00 3.58
811 1219 3.505293 GGGCTCTAATGGTAGTACGGTAG 59.495 52.174 0.00 0.00 0.00 3.18
812 1220 3.117550 TGGGCTCTAATGGTAGTACGGTA 60.118 47.826 0.00 0.00 0.00 4.02
813 1221 2.314246 GGGCTCTAATGGTAGTACGGT 58.686 52.381 0.00 0.00 0.00 4.83
814 1222 2.313317 TGGGCTCTAATGGTAGTACGG 58.687 52.381 0.00 0.00 0.00 4.02
815 1223 4.602340 ATTGGGCTCTAATGGTAGTACG 57.398 45.455 0.00 0.00 0.00 3.67
816 1224 5.543020 ACCTATTGGGCTCTAATGGTAGTAC 59.457 44.000 0.00 0.00 39.10 2.73
817 1225 5.723355 ACCTATTGGGCTCTAATGGTAGTA 58.277 41.667 0.00 0.00 39.10 1.82
865 1274 2.165301 GCTTGCGCGTAGACCGAAT 61.165 57.895 8.43 0.00 39.56 3.34
866 1275 2.807895 GCTTGCGCGTAGACCGAA 60.808 61.111 8.43 0.00 39.56 4.30
867 1276 3.744719 AGCTTGCGCGTAGACCGA 61.745 61.111 8.43 0.00 42.32 4.69
868 1277 3.545481 CAGCTTGCGCGTAGACCG 61.545 66.667 8.43 0.00 42.32 4.79
869 1278 2.126071 TCAGCTTGCGCGTAGACC 60.126 61.111 8.43 0.00 42.32 3.85
870 1279 2.793322 GCTCAGCTTGCGCGTAGAC 61.793 63.158 8.43 0.00 42.32 2.59
871 1280 2.507102 GCTCAGCTTGCGCGTAGA 60.507 61.111 8.43 0.00 42.32 2.59
876 1285 0.603707 TATATGGGCTCAGCTTGCGC 60.604 55.000 15.67 15.67 42.57 6.09
895 1322 2.307098 GGGTAGATGGGCTGCATAGATT 59.693 50.000 0.50 0.00 0.00 2.40
899 1326 1.480212 CCGGGTAGATGGGCTGCATA 61.480 60.000 0.50 0.00 0.00 3.14
902 1329 4.937431 GCCGGGTAGATGGGCTGC 62.937 72.222 2.18 0.00 43.52 5.25
1012 1444 2.171027 GACGAGGAGGAGAGAGACCTTA 59.829 54.545 0.00 0.00 37.93 2.69
1135 1596 0.460987 CTAAGCAGCGGGGTGAAGAG 60.461 60.000 1.43 0.00 0.00 2.85
1177 1638 4.202377 GCTAGGGTTTTAGGAGAGGGATTC 60.202 50.000 0.00 0.00 0.00 2.52
1240 1701 3.193691 CACAACAGAGATCCTACGAACCT 59.806 47.826 0.00 0.00 0.00 3.50
1245 1706 2.755655 AGTCCACAACAGAGATCCTACG 59.244 50.000 0.00 0.00 0.00 3.51
1258 1719 3.073274 TCATCTCTCGAGAGTCCACAA 57.927 47.619 35.11 19.72 41.33 3.33
1307 1772 2.281484 GCAGTTCAACCGGCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
1315 1780 1.339929 ACCAAAATCGGGCAGTTCAAC 59.660 47.619 0.00 0.00 0.00 3.18
1341 1806 1.067354 GGGTTCCAGCAAAAGCATGAG 60.067 52.381 0.00 0.00 0.00 2.90
1383 1848 2.082231 GCGAGGGTTTCCTAAAAGGAC 58.918 52.381 0.00 0.00 45.78 3.85
1444 1909 0.904865 TGTACTGTGGAGGGAGGCAG 60.905 60.000 0.00 0.00 35.31 4.85
1455 1920 5.525745 TGGGCGATTACAAATATGTACTGTG 59.474 40.000 0.00 0.00 41.64 3.66
1474 1939 4.864334 GACCATGCTCCCTGGGCG 62.864 72.222 8.22 2.14 38.14 6.13
1475 1940 4.864334 CGACCATGCTCCCTGGGC 62.864 72.222 8.22 0.00 38.54 5.36
1478 1943 1.043816 AGATACGACCATGCTCCCTG 58.956 55.000 0.00 0.00 0.00 4.45
1481 1946 1.683917 AGACAGATACGACCATGCTCC 59.316 52.381 0.00 0.00 0.00 4.70
1524 1995 8.974238 AGCATATACTACAACCTACAACAGTAA 58.026 33.333 0.00 0.00 0.00 2.24
1544 2018 9.632638 ATGAACCAACTGAAATTACTAGCATAT 57.367 29.630 0.00 0.00 0.00 1.78
1727 2201 2.931105 TGTAGGCCCCGGAAAGCA 60.931 61.111 0.73 0.00 0.00 3.91
2131 2625 5.721232 ACTTAGGCAAGTGACATAGTGTAC 58.279 41.667 2.25 0.00 43.50 2.90
2431 2934 9.715121 ACTTACAGGTTAAAACAATAGATTCGA 57.285 29.630 0.00 0.00 0.00 3.71
2432 2935 9.755064 CACTTACAGGTTAAAACAATAGATTCG 57.245 33.333 0.00 0.00 0.00 3.34
2513 3016 3.506455 GGGAAGGGAAAGAAGTAAGTTGC 59.494 47.826 0.00 0.00 0.00 4.17
2780 3292 6.091441 CGAGAACAGAAAAGCAAGCTAGTATT 59.909 38.462 0.00 0.00 0.00 1.89
2784 3296 3.990469 TCGAGAACAGAAAAGCAAGCTAG 59.010 43.478 0.00 0.00 0.00 3.42
2843 3355 7.592885 AACAAAGCAGCATTAATCTCCATAT 57.407 32.000 0.00 0.00 0.00 1.78
2930 3442 5.235831 CACAGTGTAAGTGGATGCTATCATG 59.764 44.000 0.00 0.00 43.12 3.07
3017 3531 6.711194 ACTGGATCAATTGCTGAGAATGATAG 59.289 38.462 0.00 0.00 37.52 2.08
3041 3555 3.349006 CGCCTGCTGACACCACAC 61.349 66.667 0.00 0.00 0.00 3.82
3194 3708 4.583442 GAGGGGCCTAGGGGAGGG 62.583 77.778 11.72 0.00 46.81 4.30
3521 4035 4.226427 AGCAAGTGAATGGATAGCAAGA 57.774 40.909 0.00 0.00 0.00 3.02
3586 4100 1.668826 ATGAGGCAGGAACCAAGGTA 58.331 50.000 0.00 0.00 0.00 3.08
3747 4261 9.770097 TTTCTTGTGCATATTATCCAAAAACAA 57.230 25.926 0.00 0.00 0.00 2.83
3756 4270 8.125448 GTCTCCTGTTTTCTTGTGCATATTATC 58.875 37.037 0.00 0.00 0.00 1.75
3850 4369 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
3851 4370 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
3852 4371 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
3853 4372 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
3854 4373 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
3858 4377 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
3860 4379 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3861 4380 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3862 4381 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3863 4382 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3865 4384 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3866 4385 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3867 4386 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3869 4388 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3870 4389 4.710375 TCCTCCGTCCCATAATATAAGAGC 59.290 45.833 0.00 0.00 0.00 4.09
3871 4390 6.437793 ACTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
3872 4391 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3873 4392 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3874 4393 6.154021 GCTACTTCCTCCGTCCCATAATATAA 59.846 42.308 0.00 0.00 0.00 0.98
3875 4394 5.655532 GCTACTTCCTCCGTCCCATAATATA 59.344 44.000 0.00 0.00 0.00 0.86
3877 4396 3.830755 GCTACTTCCTCCGTCCCATAATA 59.169 47.826 0.00 0.00 0.00 0.98
3881 4442 0.325296 TGCTACTTCCTCCGTCCCAT 60.325 55.000 0.00 0.00 0.00 4.00
3883 4444 1.700955 TATGCTACTTCCTCCGTCCC 58.299 55.000 0.00 0.00 0.00 4.46
3893 4454 7.092846 ACTGAACCTCAACCTTATATGCTACTT 60.093 37.037 0.00 0.00 0.00 2.24
3894 4455 6.384305 ACTGAACCTCAACCTTATATGCTACT 59.616 38.462 0.00 0.00 0.00 2.57
3895 4456 6.480320 CACTGAACCTCAACCTTATATGCTAC 59.520 42.308 0.00 0.00 0.00 3.58
3896 4457 6.408092 CCACTGAACCTCAACCTTATATGCTA 60.408 42.308 0.00 0.00 0.00 3.49
3897 4458 5.431765 CACTGAACCTCAACCTTATATGCT 58.568 41.667 0.00 0.00 0.00 3.79
4090 4765 2.941720 GGAAAGAAGAGAGCATTGCGAT 59.058 45.455 2.38 0.00 0.00 4.58
4093 4768 1.747924 GGGGAAAGAAGAGAGCATTGC 59.252 52.381 0.00 0.00 0.00 3.56
4138 4816 1.398958 GCCCAAAAGTGGCCTGTTCA 61.399 55.000 3.32 0.00 44.46 3.18
4545 5437 1.203174 TGTCACTGGGAGGTCAGATCA 60.203 52.381 0.00 0.00 38.11 2.92
4627 5519 2.200067 GAATGTGCTCTGGTCATCTCG 58.800 52.381 0.00 0.00 0.00 4.04
4667 5567 5.065090 CAGTAACAATGGCATCGAAGATGAA 59.935 40.000 13.56 1.92 45.12 2.57
4693 5593 3.488090 GTAGCGCCCACGACAAGC 61.488 66.667 2.29 0.00 43.93 4.01
4754 5654 1.130054 ACAGTCATGGCCACCTCTGT 61.130 55.000 23.87 23.87 0.00 3.41
4994 5896 9.590451 GAAATTCAGCAATGATTTCATTCCTTA 57.410 29.630 2.83 0.00 44.10 2.69
5024 5926 3.905493 TCATTTGGGTGGTAGGGAAAA 57.095 42.857 0.00 0.00 0.00 2.29
5169 6582 7.712204 ACAAAGAAAAATATCCGGTGGTAAT 57.288 32.000 0.00 0.00 0.00 1.89
5566 6980 5.406649 ACACACAACATGGTTAAACAACAG 58.593 37.500 0.00 0.00 0.00 3.16
5595 7009 4.111916 GCATACAATACCAATGGTTGCAC 58.888 43.478 11.41 0.00 37.09 4.57
5831 7247 8.607459 AGATCATTCAGATTATGTTCGTGAAAC 58.393 33.333 0.00 0.00 37.00 2.78
5838 7254 9.979578 AGTGACTAGATCATTCAGATTATGTTC 57.020 33.333 0.00 0.00 40.28 3.18
6429 7852 4.467438 TCAGCTTAATCCATGACTCACTCA 59.533 41.667 0.00 0.00 0.00 3.41
6430 7853 5.016051 TCAGCTTAATCCATGACTCACTC 57.984 43.478 0.00 0.00 0.00 3.51
6431 7854 5.426689 TTCAGCTTAATCCATGACTCACT 57.573 39.130 0.00 0.00 0.00 3.41
6432 7855 6.690194 ATTTCAGCTTAATCCATGACTCAC 57.310 37.500 0.00 0.00 0.00 3.51
6470 7893 5.060662 TGACAAGACTATCTTCCAACTCG 57.939 43.478 0.00 0.00 33.78 4.18
6569 7992 8.577296 TGAATATCTTTCTGTAGGATTAGGTCG 58.423 37.037 0.00 0.00 0.00 4.79
6584 8007 8.252964 ACAGTTAAGACGGTTGAATATCTTTC 57.747 34.615 0.00 0.00 33.53 2.62
6790 8214 8.624701 ATCTCAAAGTTGCATATCAAAATTCG 57.375 30.769 0.00 0.00 36.26 3.34
6952 8376 5.028677 ACAGGATCTGGAGCATCATGCTT 62.029 47.826 14.94 0.00 43.05 3.91
7145 8570 3.545703 GGTTCCGAGATCACATGGATTT 58.454 45.455 0.00 0.00 36.00 2.17
7146 8571 2.483714 CGGTTCCGAGATCACATGGATT 60.484 50.000 5.19 0.00 36.00 3.01
7298 8724 6.981722 AGCCAAACCTGATTTAAAGTAACAG 58.018 36.000 0.00 1.54 0.00 3.16
7301 8727 7.118680 CGTAGAGCCAAACCTGATTTAAAGTAA 59.881 37.037 0.00 0.00 0.00 2.24
7343 8769 4.504864 CCAGACTTGACAAGGACAATACCA 60.505 45.833 19.16 0.00 0.00 3.25
7898 9342 0.882042 AGCGAGCACAAACACAGAGG 60.882 55.000 0.00 0.00 0.00 3.69
7899 9343 0.510359 GAGCGAGCACAAACACAGAG 59.490 55.000 0.00 0.00 0.00 3.35
8014 9464 3.230990 GCCCAACCACAACACCCC 61.231 66.667 0.00 0.00 0.00 4.95
8089 9539 1.654501 GCGTTACACGACGAAAACACC 60.655 52.381 0.00 0.00 46.05 4.16
8135 9585 0.603065 GGGCAAAACCAGCTAGTTGG 59.397 55.000 22.88 22.88 44.09 3.77
8177 9630 1.139853 AGAATCAGGAAGGACATCCGC 59.860 52.381 0.00 0.00 44.60 5.54
8178 9631 3.550437 AAGAATCAGGAAGGACATCCG 57.450 47.619 0.00 0.00 44.60 4.18
8200 9653 5.825679 ACTTATAAGCGCATGTTTAATCCCA 59.174 36.000 11.47 0.00 0.00 4.37
8212 9665 6.735678 TTCAGATTTTCACTTATAAGCGCA 57.264 33.333 11.47 0.00 0.00 6.09
8260 9715 4.685628 ACCTTCGCATTTGCAATTTACTTG 59.314 37.500 0.00 0.00 42.21 3.16
8270 9725 0.171903 ATGAGCACCTTCGCATTTGC 59.828 50.000 0.00 0.00 35.08 3.68
8271 9726 1.468565 CCATGAGCACCTTCGCATTTG 60.469 52.381 0.00 0.00 0.00 2.32
8272 9727 0.813184 CCATGAGCACCTTCGCATTT 59.187 50.000 0.00 0.00 0.00 2.32
8273 9728 1.033746 CCCATGAGCACCTTCGCATT 61.034 55.000 0.00 0.00 0.00 3.56
8274 9729 1.452651 CCCATGAGCACCTTCGCAT 60.453 57.895 0.00 0.00 0.00 4.73
8275 9730 2.046023 CCCATGAGCACCTTCGCA 60.046 61.111 0.00 0.00 0.00 5.10
8276 9731 1.372087 CTTCCCATGAGCACCTTCGC 61.372 60.000 0.00 0.00 0.00 4.70
8277 9732 2.772739 CTTCCCATGAGCACCTTCG 58.227 57.895 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.