AutoCloner

Multiple sequence alignment - TraesCS4D01G189900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G189900	chr4D	100.000	4434	0	0	1	4434	331639973	331635540	0.000000e+00	8189.0
1	TraesCS4D01G189900	chr4D	84.266	858	104	16	1332	2182	330962096	330962929	0.000000e+00	808.0
2	TraesCS4D01G189900	chr4B	97.335	3828	63	9	3	3816	409740959	409744761	0.000000e+00	6468.0
3	TraesCS4D01G189900	chr4B	99.297	569	3	1	3866	4434	409744757	409745324	0.000000e+00	1027.0
4	TraesCS4D01G189900	chr7D	87.372	1267	116	21	1106	2348	477406692	477405446	0.000000e+00	1413.0
5	TraesCS4D01G189900	chr7D	88.737	293	28	2	2398	2685	477405447	477405155	1.960000e-93	353.0
6	TraesCS4D01G189900	chr7D	86.598	97	13	0	2783	2879	565650854	565650758	1.690000e-19	108.0
7	TraesCS4D01G189900	chr7D	92.683	41	3	0	2428	2468	477405444	477405404	4.790000e-05	60.2
8	TraesCS4D01G189900	chr7B	88.266	946	88	13	1106	2041	501781335	501780403	0.000000e+00	1110.0
9	TraesCS4D01G189900	chr7B	84.843	508	41	13	2037	2532	501778787	501778304	3.100000e-131	479.0
10	TraesCS4D01G189900	chr7B	77.747	728	117	33	110	811	198616784	198617492	5.340000e-109	405.0
11	TraesCS4D01G189900	chr7B	74.304	611	150	6	1452	2060	424536782	424537387	7.360000e-63	252.0
12	TraesCS4D01G189900	chr7B	82.822	163	17	6	2528	2681	501769651	501769491	7.740000e-28	135.0
13	TraesCS4D01G189900	chr7B	96.970	66	2	0	18	83	227739064	227738999	1.300000e-20	111.0
14	TraesCS4D01G189900	chr7B	90.476	84	8	0	735	818	403419397	403419480	1.300000e-20	111.0
15	TraesCS4D01G189900	chr7B	89.535	86	9	0	735	820	735269391	735269306	4.690000e-20	110.0
16	TraesCS4D01G189900	chr7A	87.326	576	61	6	1309	1878	518665608	518666177	0.000000e+00	649.0
17	TraesCS4D01G189900	chr7A	87.632	380	39	3	1875	2254	518666379	518666750	6.810000e-118	435.0
18	TraesCS4D01G189900	chr7A	95.276	127	6	0	2440	2566	518666821	518666947	7.520000e-48	202.0
19	TraesCS4D01G189900	chr5D	80.360	555	70	26	289	817	43330654	43330113	6.960000e-103	385.0
20	TraesCS4D01G189900	chr6D	83.668	398	52	9	287	682	227511781	227511395	3.260000e-96	363.0
21	TraesCS4D01G189900	chr4A	82.161	398	55	13	293	686	460277521	460277906	1.190000e-85	327.0
22	TraesCS4D01G189900	chr4A	87.356	87	9	2	2781	2866	598239319	598239234	1.010000e-16	99.0
23	TraesCS4D01G189900	chr3D	83.904	292	27	12	3397	3669	246608042	246608332	1.220000e-65	261.0
24	TraesCS4D01G189900	chr3D	78.740	254	29	10	3120	3357	246607631	246607875	3.570000e-31	147.0
25	TraesCS4D01G189900	chr3B	81.515	330	35	14	3365	3669	352003750	352004078	9.520000e-62	248.0
26	TraesCS4D01G189900	chr3B	84.000	150	14	3	3218	3357	352003473	352003622	7.740000e-28	135.0
27	TraesCS4D01G189900	chr3B	91.667	84	7	0	735	818	754031468	754031385	2.800000e-22	117.0
28	TraesCS4D01G189900	chr3B	91.304	46	4	0	3120	3165	352003378	352003423	3.700000e-06	63.9
29	TraesCS4D01G189900	chr3A	82.955	264	34	9	289	549	30559273	30559528	1.240000e-55	228.0
30	TraesCS4D01G189900	chr3A	82.192	292	26	14	3397	3669	318504875	318505159	1.240000e-55	228.0
31	TraesCS4D01G189900	chr3A	78.346	254	30	9	3120	3357	318504467	318504711	1.660000e-29	141.0
32	TraesCS4D01G189900	chr3A	81.250	96	11	7	1498	1590	480099065	480098974	2.210000e-08	71.3
33	TraesCS4D01G189900	chr2A	78.272	405	50	23	289	679	413482663	413483043	4.460000e-55	226.0
34	TraesCS4D01G189900	chr2A	72.129	714	167	24	1368	2065	90428861	90428164	2.110000e-43	187.0
35	TraesCS4D01G189900	chr2A	88.288	111	12	1	3777	3887	1962297	1962406	1.000000e-26	132.0
36	TraesCS4D01G189900	chr2A	88.288	111	12	1	3777	3887	2037242	2037351	1.000000e-26	132.0
37	TraesCS4D01G189900	chr2A	88.288	111	12	1	3777	3887	2092242	2092351	1.000000e-26	132.0
38	TraesCS4D01G189900	chr2A	87.387	111	13	1	3777	3887	1999690	1999799	4.660000e-25	126.0
39	TraesCS4D01G189900	chr2A	87.387	111	13	1	3777	3887	2129062	2129171	4.660000e-25	126.0
40	TraesCS4D01G189900	chr2D	72.867	715	160	26	1368	2065	90523098	90522401	9.660000e-52	215.0
41	TraesCS4D01G189900	chr2D	92.857	84	6	0	735	818	242333994	242334077	6.020000e-24	122.0
42	TraesCS4D01G189900	chr1B	84.163	221	24	11	2790	3008	453029765	453029976	2.090000e-48	204.0
43	TraesCS4D01G189900	chr1B	98.780	82	1	0	1	82	121769477	121769558	3.570000e-31	147.0
44	TraesCS4D01G189900	chr1B	92.857	84	6	0	735	818	652266631	652266714	6.020000e-24	122.0
45	TraesCS4D01G189900	chrUn	88.288	111	12	1	3777	3887	394517978	394518087	1.000000e-26	132.0
46	TraesCS4D01G189900	chr5B	94.805	77	4	0	735	811	357912075	357912151	2.170000e-23	121.0
47	TraesCS4D01G189900	chr6B	91.667	84	7	0	735	818	92061459	92061376	2.800000e-22	117.0
48	TraesCS4D01G189900	chr6B	96.970	66	2	0	18	83	457303593	457303658	1.300000e-20	111.0
49	TraesCS4D01G189900	chr6B	96.875	64	2	0	18	81	550343391	550343328	1.690000e-19	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G189900	chr4D	331635540	331639973	4433	True	8189.000000	8189	100.000000	1	4434	1	chr4D.!!$R1	4433
1	TraesCS4D01G189900	chr4D	330962096	330962929	833	False	808.000000	808	84.266000	1332	2182	1	chr4D.!!$F1	850
2	TraesCS4D01G189900	chr4B	409740959	409745324	4365	False	3747.500000	6468	98.316000	3	4434	2	chr4B.!!$F1	4431
3	TraesCS4D01G189900	chr7D	477405155	477406692	1537	True	608.733333	1413	89.597333	1106	2685	3	chr7D.!!$R2	1579
4	TraesCS4D01G189900	chr7B	501778304	501781335	3031	True	794.500000	1110	86.554500	1106	2532	2	chr7B.!!$R4	1426
5	TraesCS4D01G189900	chr7B	198616784	198617492	708	False	405.000000	405	77.747000	110	811	1	chr7B.!!$F1	701
6	TraesCS4D01G189900	chr7B	424536782	424537387	605	False	252.000000	252	74.304000	1452	2060	1	chr7B.!!$F3	608
7	TraesCS4D01G189900	chr7A	518665608	518666947	1339	False	428.666667	649	90.078000	1309	2566	3	chr7A.!!$F1	1257
8	TraesCS4D01G189900	chr5D	43330113	43330654	541	True	385.000000	385	80.360000	289	817	1	chr5D.!!$R1	528
9	TraesCS4D01G189900	chr3D	246607631	246608332	701	False	204.000000	261	81.322000	3120	3669	2	chr3D.!!$F1	549
10	TraesCS4D01G189900	chr2D	90522401	90523098	697	True	215.000000	215	72.867000	1368	2065	1	chr2D.!!$R1	697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
257	258	0.370273	GCATCAACACGCGGTAGAAG	59.63	55.0	12.47	0.86	0.0	2.85	F
2002	2317	0.320421	CCGTGGTCACTTTGATCCGT	60.32	55.0	0.00	0.00	0.0	4.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2219	4161	1.656652	CTTCGGACCATCGCTTTCAT	58.343	50.0	0.0	0.0	0.0	2.57	R
3847	5995	0.473755	TTTGGCTCTGTCCTTGCTCA	59.526	50.0	0.0	0.0	0.0	4.26	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	7.693952	TGTTCAGAACACTGACTTATCAAAAC	58.306	34.615	12.24	0.00	39.88	2.43
66	67	3.807553	TCAACTGACTTGCAATCTCACA	58.192	40.909	0.00	0.00	0.00	3.58
73	74	5.490159	TGACTTGCAATCTCACATGTATCA	58.510	37.500	0.00	0.00	0.00	2.15
102	103	6.038161	TGACTTATCAAAACAGACACAACCAG	59.962	38.462	0.00	0.00	0.00	4.00
108	109	4.976224	AAACAGACACAACCAGGTAAAC	57.024	40.909	0.00	0.00	0.00	2.01
257	258	0.370273	GCATCAACACGCGGTAGAAG	59.630	55.000	12.47	0.86	0.00	2.85
407	408	3.731216	CGACTAGATCCACGCATAAACAG	59.269	47.826	0.00	0.00	0.00	3.16
410	411	2.009774	AGATCCACGCATAAACAGCAC	58.990	47.619	0.00	0.00	0.00	4.40
560	564	1.446099	GAAGTCGATGCGCCAGACA	60.446	57.895	22.65	0.00	37.36	3.41
590	594	1.576356	GTTCATCGATGCACTCCCTC	58.424	55.000	20.81	0.00	0.00	4.30
591	595	1.134699	GTTCATCGATGCACTCCCTCA	60.135	52.381	20.81	0.00	0.00	3.86
733	806	0.963962	ACGAAACGGAGACCTTAGCA	59.036	50.000	0.00	0.00	0.00	3.49
831	904	2.112279	ATTCCCATACCCGCCTCTAA	57.888	50.000	0.00	0.00	0.00	2.10
872	945	1.191535	GAAAATAAAAGGGCCGGGCT	58.808	50.000	28.80	10.65	0.00	5.19
873	946	2.291670	TGAAAATAAAAGGGCCGGGCTA	60.292	45.455	28.80	12.78	0.00	3.93
972	1047	7.344134	TCCTAGGTTTTCTTCCTTTATAAGCC	58.656	38.462	9.08	0.00	36.60	4.35
1176	1252	5.804944	TTTGAGATTTGGGCTTGATTGAA	57.195	34.783	0.00	0.00	0.00	2.69
1534	1629	1.897423	CATGGGTCGCCAGAGTACA	59.103	57.895	0.00	0.00	0.00	2.90
2002	2317	0.320421	CCGTGGTCACTTTGATCCGT	60.320	55.000	0.00	0.00	0.00	4.69
2219	4161	0.247460	CAGTGCGTCTCCATTGAGGA	59.753	55.000	0.00	0.00	46.75	3.71
2378	4352	2.191400	CAAGGAAGAGGGAGATGTGGA	58.809	52.381	0.00	0.00	0.00	4.02
2382	4356	2.122768	GAAGAGGGAGATGTGGATGGT	58.877	52.381	0.00	0.00	0.00	3.55
2638	4613	6.506827	CGCATTTTGCATGTAATAAAGTGCTC	60.507	38.462	20.22	0.00	45.36	4.26
2664	4644	7.681679	TGTGGTATTCAGTTCCTATGTTTACA	58.318	34.615	0.00	0.00	0.00	2.41
2728	4708	8.671384	TGTATTACCTTCCTATGTTTATGTGC	57.329	34.615	0.00	0.00	0.00	4.57
2759	4741	6.173339	TCCATGAATGTCTCTTCTTTGGTAC	58.827	40.000	0.00	0.00	33.99	3.34
2789	4771	3.873952	GACTAGATGACCTGCCAAATGAC	59.126	47.826	0.00	0.00	0.00	3.06
2817	4799	1.999024	CCCATTTAAAACCATGTGCGC	59.001	47.619	0.00	0.00	0.00	6.09
2865	4847	7.873739	AGTAATTTTATGTTTGAGCAAGCAC	57.126	32.000	1.85	0.00	34.44	4.40
3099	5081	2.049228	GTATCCGACGAAATACGCCAG	58.951	52.381	0.00	0.00	46.94	4.85
3449	5580	5.577945	CCAAATAAATGCTTTGGCTAGTGTG	59.422	40.000	1.86	0.00	44.36	3.82
3502	5650	7.822334	TGAAGTCCATGTAATACGAACAGATTT	59.178	33.333	0.00	0.00	0.00	2.17
3733	5881	4.458295	AGATTTGGTCTGCAACTCATCAAG	59.542	41.667	0.00	0.00	35.31	3.02
3826	5974	7.622893	TTAGCATATAAATTCAGTGCACACA	57.377	32.000	21.04	0.84	38.23	3.72
3827	5975	6.513806	AGCATATAAATTCAGTGCACACAA	57.486	33.333	21.04	11.32	38.23	3.33
3828	5976	7.104043	AGCATATAAATTCAGTGCACACAAT	57.896	32.000	21.04	13.21	38.23	2.71
3829	5977	7.198390	AGCATATAAATTCAGTGCACACAATC	58.802	34.615	21.04	2.97	38.23	2.67
3830	5978	6.418819	GCATATAAATTCAGTGCACACAATCC	59.581	38.462	21.04	0.00	35.93	3.01
3831	5979	7.682741	GCATATAAATTCAGTGCACACAATCCT	60.683	37.037	21.04	9.44	35.93	3.24
3832	5980	4.942761	AAATTCAGTGCACACAATCCTT	57.057	36.364	21.04	5.85	0.00	3.36
3833	5981	4.942761	AATTCAGTGCACACAATCCTTT	57.057	36.364	21.04	0.00	0.00	3.11
3834	5982	4.942761	ATTCAGTGCACACAATCCTTTT	57.057	36.364	21.04	0.00	0.00	2.27
3835	5983	4.734398	TTCAGTGCACACAATCCTTTTT	57.266	36.364	21.04	0.00	0.00	1.94
3862	6010	7.158021	ACTTATAATATGAGCAAGGACAGAGC	58.842	38.462	0.00	0.00	0.00	4.09
3863	6011	2.926778	ATATGAGCAAGGACAGAGCC	57.073	50.000	0.00	0.00	0.00	4.70
3864	6012	1.571955	TATGAGCAAGGACAGAGCCA	58.428	50.000	0.00	0.00	0.00	4.75
4066	6214	5.576774	GCATAGAATTTACAACCAGGCAAAC	59.423	40.000	0.00	0.00	0.00	2.93

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	6.703607	AGTTGAATCTAGTTTGACAGTGTCTG	59.296	38.462	23.29	7.51	37.52	3.51
66	67	8.846943	TGTTTTGATAAGTCAGTGTGATACAT	57.153	30.769	0.00	0.00	35.39	2.29
73	74	6.112734	TGTGTCTGTTTTGATAAGTCAGTGT	58.887	36.000	0.00	0.00	35.39	3.55
102	103	7.199766	TGCATTTGAATTCATATCCGTTTACC	58.800	34.615	9.40	0.00	0.00	2.85
108	109	7.325338	GTCTTGATGCATTTGAATTCATATCCG	59.675	37.037	9.40	0.80	0.00	4.18
150	151	4.022068	CCTGCCATGTGTGTAAATGAAACT	60.022	41.667	0.00	0.00	0.00	2.66
257	258	2.094762	AGTTTGTGCGGTGGTAGATC	57.905	50.000	0.00	0.00	0.00	2.75
407	408	1.135141	TGCTTGTTCTTGTGTTGGTGC	60.135	47.619	0.00	0.00	0.00	5.01
410	411	1.476085	TGGTGCTTGTTCTTGTGTTGG	59.524	47.619	0.00	0.00	0.00	3.77
472	473	4.587684	TCTGGTTCGTTCTTCTTCTAACCT	59.412	41.667	0.00	0.00	37.76	3.50
560	564	3.617531	GCATCGATGAACCCTAATCCGAT	60.618	47.826	29.20	0.00	0.00	4.18
590	594	1.864862	GGAATCAGGCGCATCGATG	59.135	57.895	21.27	21.27	0.00	3.84
591	595	1.665916	CGGAATCAGGCGCATCGAT	60.666	57.895	10.83	5.40	0.00	3.59
843	916	6.090763	CGGCCCTTTTATTTTCAGTTTTCATC	59.909	38.462	0.00	0.00	0.00	2.92
872	945	2.738587	TGGTGTTTTCTTGGGCTGTA	57.261	45.000	0.00	0.00	0.00	2.74
873	946	1.688197	CATGGTGTTTTCTTGGGCTGT	59.312	47.619	0.00	0.00	0.00	4.40
957	1032	4.766375	CGAAGGTGGCTTATAAAGGAAGA	58.234	43.478	0.00	0.00	0.00	2.87
972	1047	0.241213	TGAGAGACGAAGCGAAGGTG	59.759	55.000	0.00	0.00	39.47	4.00
1096	1171	5.428496	TCAACATCAAGCAGAAGAAACAG	57.572	39.130	0.00	0.00	0.00	3.16
1217	1294	1.741770	GCCGTTGGCTCTTCATCGT	60.742	57.895	0.00	0.00	46.69	3.73
1245	1322	7.366847	AGATCTGATTCCTTCGATTCCTTTA	57.633	36.000	0.00	0.00	0.00	1.85
1534	1629	2.439156	GCCAAAGGCTGAGGCGAT	60.439	61.111	13.80	0.00	46.69	4.58
2002	2317	2.524306	CCCAACAAAGGCATTGAGGTA	58.476	47.619	9.74	0.00	41.85	3.08
2219	4161	1.656652	CTTCGGACCATCGCTTTCAT	58.343	50.000	0.00	0.00	0.00	2.57
2378	4352	3.641906	CTCAATAGAGTAACCGGGACCAT	59.358	47.826	6.32	0.00	37.11	3.55
2382	4356	3.294214	GTCCTCAATAGAGTAACCGGGA	58.706	50.000	6.32	0.00	40.40	5.14
2638	4613	7.822334	TGTAAACATAGGAACTGAATACCACAG	59.178	37.037	0.00	0.00	41.52	3.66
2664	4644	2.665165	TGAGCCACAACCAAGTGAAAT	58.335	42.857	0.00	0.00	42.05	2.17
2747	4727	9.475620	TCTAGTCTTCATATGTACCAAAGAAGA	57.524	33.333	1.90	11.53	39.13	2.87
2759	4741	5.011431	TGGCAGGTCATCTAGTCTTCATATG	59.989	44.000	0.00	0.00	0.00	1.78
2789	4771	2.428890	TGGTTTTAAATGGGCCTATGCG	59.571	45.455	0.67	0.00	38.85	4.73
2865	4847	1.001974	TCGGGTTTGACATGGTCTCTG	59.998	52.381	0.00	0.00	33.15	3.35
3449	5580	1.975660	TGTGGCACAGTTAGGGTTTC	58.024	50.000	17.96	0.00	41.80	2.78
3502	5650	5.945784	AGCAGCAGGTGTAATCTTCAATTAA	59.054	36.000	0.66	0.00	0.00	1.40
3733	5881	7.193595	CGGACCAAATTAGGTACATCAAAATC	58.806	38.462	0.00	0.00	43.07	2.17
3811	5959	4.942761	AAGGATTGTGTGCACTGAATTT	57.057	36.364	19.41	5.62	0.00	1.82
3812	5960	4.942761	AAAGGATTGTGTGCACTGAATT	57.057	36.364	19.41	0.00	0.00	2.17
3813	5961	4.942761	AAAAGGATTGTGTGCACTGAAT	57.057	36.364	19.41	15.17	0.00	2.57
3814	5962	4.734398	AAAAAGGATTGTGTGCACTGAA	57.266	36.364	19.41	10.84	0.00	3.02
3836	5984	8.307483	GCTCTGTCCTTGCTCATATTATAAGTA	58.693	37.037	0.00	0.00	0.00	2.24
3837	5985	7.158021	GCTCTGTCCTTGCTCATATTATAAGT	58.842	38.462	0.00	0.00	0.00	2.24
3838	5986	6.593382	GGCTCTGTCCTTGCTCATATTATAAG	59.407	42.308	0.00	0.00	0.00	1.73
3839	5987	6.043127	TGGCTCTGTCCTTGCTCATATTATAA	59.957	38.462	0.00	0.00	0.00	0.98
3840	5988	5.543790	TGGCTCTGTCCTTGCTCATATTATA	59.456	40.000	0.00	0.00	0.00	0.98
3841	5989	4.349048	TGGCTCTGTCCTTGCTCATATTAT	59.651	41.667	0.00	0.00	0.00	1.28
3842	5990	3.711190	TGGCTCTGTCCTTGCTCATATTA	59.289	43.478	0.00	0.00	0.00	0.98
3843	5991	2.507058	TGGCTCTGTCCTTGCTCATATT	59.493	45.455	0.00	0.00	0.00	1.28
3844	5992	2.121948	TGGCTCTGTCCTTGCTCATAT	58.878	47.619	0.00	0.00	0.00	1.78
3845	5993	1.571955	TGGCTCTGTCCTTGCTCATA	58.428	50.000	0.00	0.00	0.00	2.15
3846	5994	0.694771	TTGGCTCTGTCCTTGCTCAT	59.305	50.000	0.00	0.00	0.00	2.90
3847	5995	0.473755	TTTGGCTCTGTCCTTGCTCA	59.526	50.000	0.00	0.00	0.00	4.26
3848	5996	1.609208	TTTTGGCTCTGTCCTTGCTC	58.391	50.000	0.00	0.00	0.00	4.26
3849	5997	2.299326	ATTTTGGCTCTGTCCTTGCT	57.701	45.000	0.00	0.00	0.00	3.91
3850	5998	4.488879	CTTAATTTTGGCTCTGTCCTTGC	58.511	43.478	0.00	0.00	0.00	4.01
3851	5999	4.766891	TCCTTAATTTTGGCTCTGTCCTTG	59.233	41.667	0.00	0.00	0.00	3.61
3852	6000	4.998051	TCCTTAATTTTGGCTCTGTCCTT	58.002	39.130	0.00	0.00	0.00	3.36
3853	6001	4.593956	CTCCTTAATTTTGGCTCTGTCCT	58.406	43.478	0.00	0.00	0.00	3.85
3854	6002	3.129462	GCTCCTTAATTTTGGCTCTGTCC	59.871	47.826	0.00	0.00	0.00	4.02
3855	6003	3.129462	GGCTCCTTAATTTTGGCTCTGTC	59.871	47.826	0.00	0.00	0.00	3.51
3856	6004	3.092301	GGCTCCTTAATTTTGGCTCTGT	58.908	45.455	0.00	0.00	0.00	3.41
3857	6005	2.428530	GGGCTCCTTAATTTTGGCTCTG	59.571	50.000	0.00	0.00	0.00	3.35
3858	6006	2.042979	TGGGCTCCTTAATTTTGGCTCT	59.957	45.455	0.00	0.00	0.00	4.09
3859	6007	2.456577	TGGGCTCCTTAATTTTGGCTC	58.543	47.619	0.00	0.00	0.00	4.70
3860	6008	2.621556	TGGGCTCCTTAATTTTGGCT	57.378	45.000	0.00	0.00	0.00	4.75
3861	6009	2.093500	CCTTGGGCTCCTTAATTTTGGC	60.093	50.000	0.00	0.00	0.00	4.52
3862	6010	3.440127	TCCTTGGGCTCCTTAATTTTGG	58.560	45.455	0.00	0.00	0.00	3.28
3863	6011	5.482163	TTTCCTTGGGCTCCTTAATTTTG	57.518	39.130	0.00	0.00	0.00	2.44
3864	6012	5.571454	GCATTTCCTTGGGCTCCTTAATTTT	60.571	40.000	0.00	0.00	0.00	1.82
4123	6271	7.038302	TGGTCAGTGGAAATAGAACTTCAGTAT	60.038	37.037	0.00	0.00	0.00	2.12
4404	6552	5.528690	TGCGCTTCTAATTCTGAATTATGCT	59.471	36.000	19.91	0.69	33.21	3.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.