Multiple sequence alignment - TraesCS4D01G189600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G189600 chr4D 100.000 5142 0 0 1 5142 329141403 329136262 0.000000e+00 9496.0
1 TraesCS4D01G189600 chr1B 94.668 2532 93 22 2026 4542 135815399 135817903 0.000000e+00 3890.0
2 TraesCS4D01G189600 chr1B 95.632 1099 20 6 926 2024 135814266 135815336 0.000000e+00 1738.0
3 TraesCS4D01G189600 chr1B 89.418 189 15 3 4954 5142 135818187 135818370 3.100000e-57 233.0
4 TraesCS4D01G189600 chr1B 78.378 222 22 16 4749 4952 135817902 135818115 2.510000e-23 121.0
5 TraesCS4D01G189600 chr1B 82.857 105 2 4 768 863 135814172 135814269 4.270000e-11 80.5
6 TraesCS4D01G189600 chr4B 95.703 2211 49 14 797 3003 408984555 408982387 0.000000e+00 3515.0
7 TraesCS4D01G189600 chr4B 97.372 1408 37 0 2999 4406 408980732 408979325 0.000000e+00 2396.0
8 TraesCS4D01G189600 chr4B 93.122 756 42 9 1 749 599368323 599369075 0.000000e+00 1099.0
9 TraesCS4D01G189600 chr4B 90.584 754 51 18 1 750 57803036 57802299 0.000000e+00 981.0
10 TraesCS4D01G189600 chr4B 88.778 401 19 13 4559 4951 408979075 408978693 7.800000e-128 468.0
11 TraesCS4D01G189600 chr4B 84.456 193 13 11 4951 5142 408978645 408978469 1.900000e-39 174.0
12 TraesCS4D01G189600 chr4B 93.277 119 5 2 4437 4552 408979330 408979212 6.850000e-39 172.0
13 TraesCS4D01G189600 chr4A 95.885 1920 64 10 2507 4425 140978051 140979956 0.000000e+00 3094.0
14 TraesCS4D01G189600 chr4A 95.502 867 28 8 797 1661 140975857 140976714 0.000000e+00 1375.0
15 TraesCS4D01G189600 chr4A 93.035 761 37 15 1 749 533906913 533907669 0.000000e+00 1098.0
16 TraesCS4D01G189600 chr4A 95.708 466 19 1 2981 3446 253273776 253274240 0.000000e+00 749.0
17 TraesCS4D01G189600 chr4A 88.931 524 19 10 4435 4951 140980030 140980521 1.220000e-170 610.0
18 TraesCS4D01G189600 chr4A 95.109 368 15 2 1659 2024 140976971 140977337 1.240000e-160 577.0
19 TraesCS4D01G189600 chr4A 93.769 337 12 3 2193 2521 140977595 140977930 9.940000e-137 497.0
20 TraesCS4D01G189600 chr4A 88.021 192 10 2 4951 5142 140980569 140980747 1.120000e-51 215.0
21 TraesCS4D01G189600 chr4A 91.538 130 7 2 2025 2154 140977469 140977594 5.290000e-40 176.0
22 TraesCS4D01G189600 chr7B 86.111 1584 172 30 2586 4151 629581295 629579742 0.000000e+00 1663.0
23 TraesCS4D01G189600 chr7B 90.691 752 59 8 1 749 43564276 43563533 0.000000e+00 990.0
24 TraesCS4D01G189600 chr7B 84.054 671 74 20 1092 1743 629582717 629582061 2.630000e-172 616.0
25 TraesCS4D01G189600 chr7B 92.913 127 9 0 1891 2017 629581583 629581457 8.790000e-43 185.0
26 TraesCS4D01G189600 chr7A 84.954 1296 154 28 2994 4276 661594034 661595301 0.000000e+00 1275.0
27 TraesCS4D01G189600 chr7A 93.758 753 36 8 1 749 698746806 698746061 0.000000e+00 1120.0
28 TraesCS4D01G189600 chr7A 82.876 765 98 19 988 1743 661589247 661589987 0.000000e+00 656.0
29 TraesCS4D01G189600 chr7A 83.754 357 43 8 2436 2786 661590777 661591124 1.790000e-84 324.0
30 TraesCS4D01G189600 chr7A 87.295 244 23 5 1774 2017 661590247 661590482 6.560000e-69 272.0
31 TraesCS4D01G189600 chr7A 93.750 112 7 0 2041 2152 661590561 661590672 8.850000e-38 169.0
32 TraesCS4D01G189600 chr7D 85.878 1225 138 20 3061 4276 572553697 572554895 0.000000e+00 1271.0
33 TraesCS4D01G189600 chr7D 84.089 949 104 30 1083 2017 572549022 572549937 0.000000e+00 872.0
34 TraesCS4D01G189600 chr7D 82.725 1013 126 31 2031 3022 572550001 572550985 0.000000e+00 856.0
35 TraesCS4D01G189600 chr3D 93.915 756 28 12 1 749 10706698 10705954 0.000000e+00 1125.0
36 TraesCS4D01G189600 chr1A 93.767 754 38 8 1 749 292528761 292528012 0.000000e+00 1123.0
37 TraesCS4D01G189600 chr5A 93.236 754 46 5 1 749 700784322 700785075 0.000000e+00 1105.0
38 TraesCS4D01G189600 chr6D 91.470 762 46 14 1 758 455253682 455252936 0.000000e+00 1029.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G189600 chr4D 329136262 329141403 5141 True 9496.000000 9496 100.000000 1 5142 1 chr4D.!!$R1 5141
1 TraesCS4D01G189600 chr1B 135814172 135818370 4198 False 1212.500000 3890 88.190600 768 5142 5 chr1B.!!$F1 4374
2 TraesCS4D01G189600 chr4B 408978469 408984555 6086 True 1345.000000 3515 91.917200 797 5142 5 chr4B.!!$R2 4345
3 TraesCS4D01G189600 chr4B 599368323 599369075 752 False 1099.000000 1099 93.122000 1 749 1 chr4B.!!$F1 748
4 TraesCS4D01G189600 chr4B 57802299 57803036 737 True 981.000000 981 90.584000 1 750 1 chr4B.!!$R1 749
5 TraesCS4D01G189600 chr4A 533906913 533907669 756 False 1098.000000 1098 93.035000 1 749 1 chr4A.!!$F2 748
6 TraesCS4D01G189600 chr4A 140975857 140980747 4890 False 934.857143 3094 92.679286 797 5142 7 chr4A.!!$F3 4345
7 TraesCS4D01G189600 chr7B 43563533 43564276 743 True 990.000000 990 90.691000 1 749 1 chr7B.!!$R1 748
8 TraesCS4D01G189600 chr7B 629579742 629582717 2975 True 821.333333 1663 87.692667 1092 4151 3 chr7B.!!$R2 3059
9 TraesCS4D01G189600 chr7A 698746061 698746806 745 True 1120.000000 1120 93.758000 1 749 1 chr7A.!!$R1 748
10 TraesCS4D01G189600 chr7A 661589247 661595301 6054 False 539.200000 1275 86.525800 988 4276 5 chr7A.!!$F1 3288
11 TraesCS4D01G189600 chr7D 572549022 572554895 5873 False 999.666667 1271 84.230667 1083 4276 3 chr7D.!!$F1 3193
12 TraesCS4D01G189600 chr3D 10705954 10706698 744 True 1125.000000 1125 93.915000 1 749 1 chr3D.!!$R1 748
13 TraesCS4D01G189600 chr1A 292528012 292528761 749 True 1123.000000 1123 93.767000 1 749 1 chr1A.!!$R1 748
14 TraesCS4D01G189600 chr5A 700784322 700785075 753 False 1105.000000 1105 93.236000 1 749 1 chr5A.!!$F1 748
15 TraesCS4D01G189600 chr6D 455252936 455253682 746 True 1029.000000 1029 91.470000 1 758 1 chr6D.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 482 0.169230 GCGAGAGTGAGAGAAAGCGA 59.831 55.000 0.00 0.00 0.00 4.93 F
427 485 0.170116 AGAGTGAGAGAAAGCGAGCG 59.830 55.000 0.00 0.00 0.00 5.03 F
429 487 0.170116 AGTGAGAGAAAGCGAGCGAG 59.830 55.000 0.00 0.00 0.00 5.03 F
430 488 1.153939 TGAGAGAAAGCGAGCGAGC 60.154 57.895 0.00 0.00 37.41 5.03 F
517 610 1.541672 GAGAGGGAGGAGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79 F
2767 3778 1.544691 TCTCGCCTACAGGTTCAGAAC 59.455 52.381 4.52 4.52 37.57 3.01 F
3237 11294 6.071334 TCCCACGGACAGATATCATATTCTTC 60.071 42.308 5.32 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 1648 1.327303 TTTTGGCGTCAGGATGCTTT 58.673 45.000 12.76 0.0 42.72 3.51 R
2160 3016 3.332919 CACAGTCTCCTCCAACATGAAG 58.667 50.000 0.00 0.0 0.00 3.02 R
2218 3074 6.419413 CAGAAAAAGGTTGCGCATTAGTAAAA 59.581 34.615 12.75 0.0 0.00 1.52 R
2475 3339 6.461110 AAGAAAATCAAGTATCAGCCCATG 57.539 37.500 0.00 0.0 0.00 3.66 R
2796 4187 6.985188 AGTTATGAGCGACAATGTAACATT 57.015 33.333 0.00 0.0 29.22 2.71 R
3972 12039 0.394352 GACATCCCAGGAATTGCGGT 60.394 55.000 6.98 0.0 0.00 5.68 R
4518 12651 1.091771 AGCAAGCAATGGATCGGTCG 61.092 55.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
269 274 9.726438 AACTTATAATTTATAGCGCAAGATCCT 57.274 29.630 11.47 0.00 43.02 3.24
422 480 2.647784 CGCGAGAGTGAGAGAAAGC 58.352 57.895 0.00 0.00 46.66 3.51
423 481 1.131037 CGCGAGAGTGAGAGAAAGCG 61.131 60.000 0.00 0.00 46.66 4.68
424 482 0.169230 GCGAGAGTGAGAGAAAGCGA 59.831 55.000 0.00 0.00 0.00 4.93
425 483 1.793714 GCGAGAGTGAGAGAAAGCGAG 60.794 57.143 0.00 0.00 0.00 5.03
426 484 1.793714 CGAGAGTGAGAGAAAGCGAGC 60.794 57.143 0.00 0.00 0.00 5.03
427 485 0.170116 AGAGTGAGAGAAAGCGAGCG 59.830 55.000 0.00 0.00 0.00 5.03
428 486 0.169230 GAGTGAGAGAAAGCGAGCGA 59.831 55.000 0.00 0.00 0.00 4.93
429 487 0.170116 AGTGAGAGAAAGCGAGCGAG 59.830 55.000 0.00 0.00 0.00 5.03
430 488 1.153939 TGAGAGAAAGCGAGCGAGC 60.154 57.895 0.00 0.00 37.41 5.03
431 489 2.202544 AGAGAAAGCGAGCGAGCG 60.203 61.111 0.00 0.00 43.00 5.03
432 490 2.202492 GAGAAAGCGAGCGAGCGA 60.202 61.111 1.41 0.00 43.00 4.93
433 491 2.202544 AGAAAGCGAGCGAGCGAG 60.203 61.111 1.41 0.00 43.00 5.03
434 492 3.907799 GAAAGCGAGCGAGCGAGC 61.908 66.667 9.12 9.12 43.00 5.03
517 610 1.541672 GAGAGGGAGGAGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79
558 652 9.034800 AGGATTAACCATATTCAACACACATTT 57.965 29.630 0.00 0.00 42.04 2.32
661 757 5.300286 CCTCGCAAAAATAAAGGAGATGGAT 59.700 40.000 0.00 0.00 0.00 3.41
750 846 1.880027 CACGGGCTCTTTTGCTAGTTT 59.120 47.619 0.00 0.00 0.00 2.66
751 847 2.293399 CACGGGCTCTTTTGCTAGTTTT 59.707 45.455 0.00 0.00 0.00 2.43
752 848 2.956333 ACGGGCTCTTTTGCTAGTTTTT 59.044 40.909 0.00 0.00 0.00 1.94
753 849 3.243401 ACGGGCTCTTTTGCTAGTTTTTG 60.243 43.478 0.00 0.00 0.00 2.44
754 850 3.059884 GGGCTCTTTTGCTAGTTTTTGC 58.940 45.455 0.00 0.00 0.00 3.68
755 851 3.492482 GGGCTCTTTTGCTAGTTTTTGCA 60.492 43.478 0.00 0.00 37.42 4.08
756 852 4.119136 GGCTCTTTTGCTAGTTTTTGCAA 58.881 39.130 0.00 0.00 45.83 4.08
819 923 2.995258 TGCGGAAGTTTCACGGTAATAC 59.005 45.455 0.00 0.00 0.00 1.89
820 924 3.256558 GCGGAAGTTTCACGGTAATACT 58.743 45.455 0.00 0.00 0.00 2.12
949 1054 2.043227 GAGGGCTAAGCTGGTACTGAT 58.957 52.381 0.00 0.00 0.00 2.90
2160 3016 2.450609 TGAAAGGTAGTGGTCGAAGC 57.549 50.000 0.00 0.00 0.00 3.86
2190 3046 2.169352 GGAGGAGACTGTGCACATATGT 59.831 50.000 22.00 15.27 44.43 2.29
2218 3074 9.590451 CATAAATAAAATGGCATCTGTTTCTGT 57.410 29.630 0.00 0.00 0.00 3.41
2767 3778 1.544691 TCTCGCCTACAGGTTCAGAAC 59.455 52.381 4.52 4.52 37.57 3.01
3237 11294 6.071334 TCCCACGGACAGATATCATATTCTTC 60.071 42.308 5.32 0.00 0.00 2.87
3545 11611 6.763135 GTCAAGCTGAACCTGTATCATTATGA 59.237 38.462 0.00 0.00 0.00 2.15
3972 12039 2.075566 TGTGGGTGCACTTCCCTGA 61.076 57.895 17.98 0.00 44.84 3.86
4163 12230 1.228737 TTGGTTTAGCAGGTGGCCC 60.229 57.895 0.00 0.00 46.50 5.80
4218 12285 1.798735 CAGCATTTGGAGCACGAGG 59.201 57.895 0.00 0.00 0.00 4.63
4250 12317 2.619074 GGCTGCTGGGAAGTGTTAGAAT 60.619 50.000 0.00 0.00 0.00 2.40
4426 12494 6.582677 TCTCTCCTACTGCATATCTAAAGC 57.417 41.667 0.00 0.00 0.00 3.51
4518 12651 6.302313 CACCGACGTATGAAATTTTGAGTTTC 59.698 38.462 0.00 0.00 36.39 2.78
4556 12820 2.554032 GCTCCAGTGTGCAAACTTACAT 59.446 45.455 6.86 0.00 0.00 2.29
4767 13041 1.511613 AGCTAAGGCCAAGGCTCATA 58.488 50.000 5.01 1.51 37.50 2.15
4813 13092 6.688073 AATTCTTCACCTAGTCTTCTTCCA 57.312 37.500 0.00 0.00 0.00 3.53
4814 13093 6.882768 ATTCTTCACCTAGTCTTCTTCCAT 57.117 37.500 0.00 0.00 0.00 3.41
4815 13094 5.667539 TCTTCACCTAGTCTTCTTCCATG 57.332 43.478 0.00 0.00 0.00 3.66
4816 13095 5.087323 TCTTCACCTAGTCTTCTTCCATGT 58.913 41.667 0.00 0.00 0.00 3.21
4817 13096 5.186021 TCTTCACCTAGTCTTCTTCCATGTC 59.814 44.000 0.00 0.00 0.00 3.06
4818 13097 4.678256 TCACCTAGTCTTCTTCCATGTCT 58.322 43.478 0.00 0.00 0.00 3.41
4819 13098 4.464244 TCACCTAGTCTTCTTCCATGTCTG 59.536 45.833 0.00 0.00 0.00 3.51
4820 13099 3.196685 ACCTAGTCTTCTTCCATGTCTGC 59.803 47.826 0.00 0.00 0.00 4.26
4821 13100 3.450457 CCTAGTCTTCTTCCATGTCTGCT 59.550 47.826 0.00 0.00 0.00 4.24
4822 13101 4.081198 CCTAGTCTTCTTCCATGTCTGCTT 60.081 45.833 0.00 0.00 0.00 3.91
4823 13102 3.936564 AGTCTTCTTCCATGTCTGCTTC 58.063 45.455 0.00 0.00 0.00 3.86
4824 13103 3.326006 AGTCTTCTTCCATGTCTGCTTCA 59.674 43.478 0.00 0.00 0.00 3.02
4825 13104 3.683822 GTCTTCTTCCATGTCTGCTTCAG 59.316 47.826 0.00 0.00 0.00 3.02
4886 13167 4.020543 CAGCTCCACCTAGTAGAGTTCTT 58.979 47.826 0.00 0.00 0.00 2.52
4905 13186 4.922206 TCTTACCAAATTGAGAGGTGCAT 58.078 39.130 0.00 0.00 36.87 3.96
4957 13318 2.029918 GTGCCAAAGCCTCCTGTAAAAG 60.030 50.000 0.00 0.00 38.69 2.27
5045 13408 7.201565 GCTTGATTACGAATCTTCCATATAGCC 60.202 40.741 0.00 0.00 38.72 3.93
5046 13409 7.239763 TGATTACGAATCTTCCATATAGCCA 57.760 36.000 0.00 0.00 38.72 4.75
5106 13469 6.476706 ACGGCGACTACTACCAATAAATTTAC 59.523 38.462 16.62 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 242 9.796120 TTGCGCTATAAATTATAAGTTTGCTTT 57.204 25.926 9.73 0.00 36.22 3.51
278 292 1.665916 CTGGATCGCCGCCAGTATG 60.666 63.158 2.94 0.00 46.19 2.39
283 297 2.203056 CAATCTGGATCGCCGCCA 60.203 61.111 0.00 0.00 36.79 5.69
434 492 4.936248 CTCTCGCTCGCTCGCTCG 62.936 72.222 0.00 0.00 0.00 5.03
438 496 1.821241 CTCTCTCTCTCGCTCGCTCG 61.821 65.000 0.00 0.00 0.00 5.03
442 500 1.067060 TCTCTCTCTCTCTCTCGCTCG 59.933 57.143 0.00 0.00 0.00 5.03
517 610 1.989706 ATCCTAAGGCGTCTCTCTCC 58.010 55.000 0.00 0.00 0.00 3.71
661 757 4.532126 ACCATCACTCAAGACCACAATAGA 59.468 41.667 0.00 0.00 0.00 1.98
766 862 6.536582 AGACAGTTAGCTGCATATTACAACAG 59.463 38.462 6.48 0.00 46.30 3.16
819 923 1.352156 GGTTCGCTGCTCCGTGTTAG 61.352 60.000 0.00 0.00 0.00 2.34
820 924 1.373748 GGTTCGCTGCTCCGTGTTA 60.374 57.895 0.00 0.00 0.00 2.41
889 994 1.742768 CACTCAGATAGGTCGGGCC 59.257 63.158 0.00 0.00 37.58 5.80
893 998 2.020720 AGACAGCACTCAGATAGGTCG 58.979 52.381 0.00 0.00 0.00 4.79
895 1000 3.194542 GTGAAGACAGCACTCAGATAGGT 59.805 47.826 0.00 0.00 33.57 3.08
949 1054 2.361070 GGTAGATAGGTGGAGGGGGAAA 60.361 54.545 0.00 0.00 0.00 3.13
1146 1260 1.298157 CGACTTCGATGCCCTGCAAA 61.298 55.000 0.00 0.00 43.62 3.68
1529 1648 1.327303 TTTTGGCGTCAGGATGCTTT 58.673 45.000 12.76 0.00 42.72 3.51
1716 2098 7.433131 CCATGCATTACATCTACAAACATGTTC 59.567 37.037 12.39 0.00 36.64 3.18
1772 2155 8.894768 TTTACCAAGGAAAAACATAAACATGG 57.105 30.769 0.00 0.00 0.00 3.66
2160 3016 3.332919 CACAGTCTCCTCCAACATGAAG 58.667 50.000 0.00 0.00 0.00 3.02
2190 3046 8.980596 AGAAACAGATGCCATTTTATTTATGGA 58.019 29.630 6.07 0.00 44.36 3.41
2218 3074 6.419413 CAGAAAAAGGTTGCGCATTAGTAAAA 59.581 34.615 12.75 0.00 0.00 1.52
2475 3339 6.461110 AAGAAAATCAAGTATCAGCCCATG 57.539 37.500 0.00 0.00 0.00 3.66
2796 4187 6.985188 AGTTATGAGCGACAATGTAACATT 57.015 33.333 0.00 0.00 29.22 2.71
2940 4334 8.292444 TCATTAGGTTTGGGAATCACAAATAG 57.708 34.615 14.22 1.76 39.68 1.73
3237 11294 3.753272 CAGTAGGATTGTTGGGTGAACAG 59.247 47.826 0.00 0.00 45.43 3.16
3472 11535 0.685097 TCCTCAGAAAACTGGACCGG 59.315 55.000 0.00 0.00 0.00 5.28
3545 11611 4.519540 GGCAACCTACACATCAACAAAT 57.480 40.909 0.00 0.00 0.00 2.32
3937 12004 2.301346 CACACATAGGGGGCATTCTTC 58.699 52.381 0.00 0.00 0.00 2.87
3972 12039 0.394352 GACATCCCAGGAATTGCGGT 60.394 55.000 6.98 0.00 0.00 5.68
4163 12230 3.465403 CTCCCCAGCGACAGAGGG 61.465 72.222 0.00 0.00 42.44 4.30
4218 12285 1.208614 CAGCAGCCGAGAAGCAAAC 59.791 57.895 0.00 0.00 34.23 2.93
4250 12317 3.630312 GCAAAAACAACACCCTGTCTCTA 59.370 43.478 0.00 0.00 0.00 2.43
4426 12494 6.666417 AGTGACTGTAGAAAGTAAGTACGTG 58.334 40.000 0.00 0.00 0.00 4.49
4498 12631 6.368213 GGTCGAAACTCAAAATTTCATACGT 58.632 36.000 0.00 0.00 36.09 3.57
4518 12651 1.091771 AGCAAGCAATGGATCGGTCG 61.092 55.000 0.00 0.00 0.00 4.79
4812 13091 2.424557 AGAAGCACTGAAGCAGACATG 58.575 47.619 0.82 0.00 35.18 3.21
4813 13092 2.855209 AGAAGCACTGAAGCAGACAT 57.145 45.000 0.82 0.00 35.18 3.06
4814 13093 2.103771 AGAAGAAGCACTGAAGCAGACA 59.896 45.455 0.82 0.00 35.18 3.41
4815 13094 2.479656 CAGAAGAAGCACTGAAGCAGAC 59.520 50.000 0.82 0.00 36.38 3.51
4816 13095 2.103771 ACAGAAGAAGCACTGAAGCAGA 59.896 45.455 0.82 0.00 37.54 4.26
4817 13096 2.492012 ACAGAAGAAGCACTGAAGCAG 58.508 47.619 0.00 0.00 37.54 4.24
4818 13097 2.615447 CAACAGAAGAAGCACTGAAGCA 59.385 45.455 0.00 0.00 37.54 3.91
4819 13098 2.604132 GCAACAGAAGAAGCACTGAAGC 60.604 50.000 0.00 0.00 37.54 3.86
4820 13099 2.615447 TGCAACAGAAGAAGCACTGAAG 59.385 45.455 0.00 0.00 37.54 3.02
4821 13100 2.642427 TGCAACAGAAGAAGCACTGAA 58.358 42.857 0.00 0.00 37.54 3.02
4822 13101 2.330440 TGCAACAGAAGAAGCACTGA 57.670 45.000 0.00 0.00 37.54 3.41
4823 13102 2.551032 TGATGCAACAGAAGAAGCACTG 59.449 45.455 0.00 0.00 40.14 3.66
4824 13103 2.551459 GTGATGCAACAGAAGAAGCACT 59.449 45.455 0.00 0.00 40.14 4.40
4825 13104 2.351157 GGTGATGCAACAGAAGAAGCAC 60.351 50.000 0.00 0.00 40.14 4.40
4886 13167 4.574674 AGATGCACCTCTCAATTTGGTA 57.425 40.909 0.00 0.00 32.13 3.25
4905 13186 2.069775 TGGGACTGGGGAAAATGAAGA 58.930 47.619 0.00 0.00 0.00 2.87
4957 13318 6.135290 TCATATGTTCTTATGCTTGTTGCC 57.865 37.500 1.90 0.00 42.00 4.52
5071 13434 5.049129 GGTAGTAGTCGCCGTAATATTCAGT 60.049 44.000 0.00 0.00 0.00 3.41
5072 13435 5.049198 TGGTAGTAGTCGCCGTAATATTCAG 60.049 44.000 0.00 0.00 0.00 3.02
5106 13469 6.414732 TCTCCCACTATTTTGACTGTATTGG 58.585 40.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.