Multiple sequence alignment - TraesCS4D01G188800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G188800 chr4D 100.000 2900 0 0 1 2900 328540524 328543423 0.000000e+00 5356.0
1 TraesCS4D01G188800 chr4D 98.658 149 1 1 2752 2900 471148810 471148957 2.220000e-66 263.0
2 TraesCS4D01G188800 chr4D 98.450 129 1 1 2752 2880 507997841 507997714 2.910000e-55 226.0
3 TraesCS4D01G188800 chr4D 92.667 150 10 1 513 662 11304520 11304372 6.290000e-52 215.0
4 TraesCS4D01G188800 chr4D 90.968 155 14 0 513 667 97930614 97930460 2.930000e-50 209.0
5 TraesCS4D01G188800 chr4D 91.447 152 13 0 513 664 425692052 425692203 2.930000e-50 209.0
6 TraesCS4D01G188800 chr4D 91.333 150 11 2 2752 2900 499449470 499449322 1.360000e-48 204.0
7 TraesCS4D01G188800 chr4A 96.737 1226 32 4 732 1951 141572355 141571132 0.000000e+00 2036.0
8 TraesCS4D01G188800 chr4A 86.573 499 37 14 1 471 141574266 141573770 9.210000e-145 523.0
9 TraesCS4D01G188800 chr4A 94.048 168 8 1 2291 2458 141571132 141570967 1.330000e-63 254.0
10 TraesCS4D01G188800 chr4B 95.283 1166 48 5 792 1951 408180097 408181261 0.000000e+00 1842.0
11 TraesCS4D01G188800 chr4B 92.732 798 40 10 21 800 408178006 408178803 0.000000e+00 1136.0
12 TraesCS4D01G188800 chr4B 91.647 431 25 7 2291 2715 408181261 408181686 1.160000e-163 586.0
13 TraesCS4D01G188800 chr7D 88.474 321 34 3 1978 2298 6010069 6009752 4.530000e-103 385.0
14 TraesCS4D01G188800 chr7D 94.631 149 6 2 2752 2900 608188622 608188768 2.250000e-56 230.0
15 TraesCS4D01G188800 chr7D 93.333 150 10 0 513 662 482123313 482123462 3.760000e-54 222.0
16 TraesCS4D01G188800 chr7D 92.667 150 11 0 513 662 568976434 568976583 1.750000e-52 217.0
17 TraesCS4D01G188800 chr7D 91.613 155 13 0 513 667 588066010 588066164 6.290000e-52 215.0
18 TraesCS4D01G188800 chr7D 91.613 155 13 0 513 667 597300819 597300973 6.290000e-52 215.0
19 TraesCS4D01G188800 chr7D 97.222 36 1 0 406 441 611766210 611766175 8.680000e-06 62.1
20 TraesCS4D01G188800 chr2D 88.328 317 36 1 1980 2295 402236224 402235908 2.110000e-101 379.0
21 TraesCS4D01G188800 chr2D 99.329 149 0 1 2752 2900 9666933 9667080 4.760000e-68 268.0
22 TraesCS4D01G188800 chr2D 98.658 149 1 1 2752 2900 605775071 605775218 2.220000e-66 263.0
23 TraesCS4D01G188800 chr2D 93.421 152 10 0 513 664 135400043 135399892 2.910000e-55 226.0
24 TraesCS4D01G188800 chr2D 91.824 159 12 1 513 670 455269026 455269184 1.350000e-53 220.0
25 TraesCS4D01G188800 chr3D 90.943 265 23 1 2033 2296 125779331 125779595 3.550000e-94 355.0
26 TraesCS4D01G188800 chr3D 90.189 265 25 1 2033 2296 125786838 125787102 7.690000e-91 344.0
27 TraesCS4D01G188800 chr3D 86.164 318 35 7 1980 2296 163116691 163116382 4.630000e-88 335.0
28 TraesCS4D01G188800 chr3D 92.715 151 11 0 513 663 610427386 610427236 4.870000e-53 219.0
29 TraesCS4D01G188800 chr3D 92.667 150 11 0 513 662 30939411 30939262 1.750000e-52 217.0
30 TraesCS4D01G188800 chr3D 92.667 150 9 1 513 662 115051702 115051849 6.290000e-52 215.0
31 TraesCS4D01G188800 chr3D 92.053 151 12 0 513 663 27931256 27931106 2.260000e-51 213.0
32 TraesCS4D01G188800 chr3D 92.617 149 10 1 2752 2900 606573271 606573418 2.260000e-51 213.0
33 TraesCS4D01G188800 chr3D 97.297 37 1 0 403 439 13149100 13149136 2.410000e-06 63.9
34 TraesCS4D01G188800 chr2B 86.435 317 42 1 1980 2296 569020533 569020218 2.140000e-91 346.0
35 TraesCS4D01G188800 chr1A 86.731 309 33 5 1985 2293 264217181 264217481 1.290000e-88 337.0
36 TraesCS4D01G188800 chr1A 93.333 150 10 0 513 662 132544207 132544058 3.760000e-54 222.0
37 TraesCS4D01G188800 chr1B 86.032 315 40 3 1980 2293 165768711 165768400 4.630000e-88 335.0
38 TraesCS4D01G188800 chr1B 88.703 239 24 3 2459 2695 668508748 668508985 3.660000e-74 289.0
39 TraesCS4D01G188800 chr1B 83.601 311 37 8 2458 2757 674058449 674058142 2.200000e-71 279.0
40 TraesCS4D01G188800 chr1B 92.157 153 12 0 513 665 502224577 502224729 1.750000e-52 217.0
41 TraesCS4D01G188800 chr3B 84.177 316 44 5 1980 2294 117922392 117922702 4.700000e-78 302.0
42 TraesCS4D01G188800 chr6D 99.329 149 0 1 2752 2900 445492534 445492387 4.760000e-68 268.0
43 TraesCS4D01G188800 chr6D 95.973 149 5 1 2752 2900 61575923 61575776 1.040000e-59 241.0
44 TraesCS4D01G188800 chr6D 92.667 150 11 0 513 662 270587520 270587371 1.750000e-52 217.0
45 TraesCS4D01G188800 chr6D 92.000 150 12 0 513 662 132686132 132685983 8.140000e-51 211.0
46 TraesCS4D01G188800 chr6D 91.447 152 13 0 513 664 118034920 118035071 2.930000e-50 209.0
47 TraesCS4D01G188800 chr6D 91.333 150 13 0 513 662 344338810 344338661 3.790000e-49 206.0
48 TraesCS4D01G188800 chr6D 91.275 149 13 0 515 663 103572151 103572003 1.360000e-48 204.0
49 TraesCS4D01G188800 chr6D 90.850 153 13 1 513 665 257598190 257598039 1.360000e-48 204.0
50 TraesCS4D01G188800 chr5D 98.658 149 1 1 2752 2900 482340282 482340135 2.220000e-66 263.0
51 TraesCS4D01G188800 chr5D 97.987 149 2 1 2752 2900 23848350 23848497 1.030000e-64 257.0
52 TraesCS4D01G188800 chr5D 96.000 150 4 2 2752 2900 23890929 23891077 2.890000e-60 243.0
53 TraesCS4D01G188800 chr2A 92.073 164 9 4 513 673 378015927 378016089 8.080000e-56 228.0
54 TraesCS4D01G188800 chr3A 93.421 152 10 0 513 664 733260733 733260582 2.910000e-55 226.0
55 TraesCS4D01G188800 chr7A 92.857 154 11 0 513 666 724232613 724232766 1.050000e-54 224.0
56 TraesCS4D01G188800 chr7A 89.423 104 7 3 2628 2728 729591885 729591987 8.430000e-26 128.0
57 TraesCS4D01G188800 chr7B 93.333 150 10 0 513 662 253676640 253676789 3.760000e-54 222.0
58 TraesCS4D01G188800 chr7B 80.973 226 31 7 2458 2672 23723796 23724020 4.970000e-38 169.0
59 TraesCS4D01G188800 chr7B 89.147 129 13 1 2629 2757 23723924 23724051 2.990000e-35 159.0
60 TraesCS4D01G188800 chr5B 93.333 150 10 0 513 662 439025820 439025969 3.760000e-54 222.0
61 TraesCS4D01G188800 chr6A 92.763 152 11 0 513 664 401782144 401782295 1.350000e-53 220.0
62 TraesCS4D01G188800 chr6A 92.715 151 11 0 513 663 300069666 300069516 4.870000e-53 219.0
63 TraesCS4D01G188800 chr6A 91.613 155 13 0 513 667 105041926 105042080 6.290000e-52 215.0
64 TraesCS4D01G188800 chr6A 97.222 36 1 0 406 441 609572251 609572216 8.680000e-06 62.1
65 TraesCS4D01G188800 chr1D 92.157 153 12 0 513 665 393753434 393753282 1.750000e-52 217.0
66 TraesCS4D01G188800 chr1D 86.897 145 14 5 2756 2900 106291115 106290976 1.080000e-34 158.0
67 TraesCS4D01G188800 chr1D 84.828 145 17 5 2756 2900 199605419 199605558 1.080000e-29 141.0
68 TraesCS4D01G188800 chrUn 91.558 154 13 0 513 666 182833413 182833260 2.260000e-51 213.0
69 TraesCS4D01G188800 chrUn 92.000 150 12 0 513 662 374329551 374329700 8.140000e-51 211.0
70 TraesCS4D01G188800 chrUn 92.000 150 12 0 513 662 397702652 397702801 8.140000e-51 211.0
71 TraesCS4D01G188800 chrUn 91.333 150 13 0 513 662 31528111 31528260 3.790000e-49 206.0
72 TraesCS4D01G188800 chrUn 90.196 153 13 2 513 663 308114552 308114704 6.340000e-47 198.0
73 TraesCS4D01G188800 chrUn 90.196 153 13 2 513 663 328316356 328316204 6.340000e-47 198.0
74 TraesCS4D01G188800 chrUn 90.132 152 14 1 513 663 88534632 88534783 2.280000e-46 196.0
75 TraesCS4D01G188800 chrUn 90.132 152 14 1 513 663 362727655 362727806 2.280000e-46 196.0
76 TraesCS4D01G188800 chrUn 88.742 151 16 1 513 662 88563320 88563170 1.770000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G188800 chr4D 328540524 328543423 2899 False 5356.000000 5356 100.000000 1 2900 1 chr4D.!!$F1 2899
1 TraesCS4D01G188800 chr4A 141570967 141574266 3299 True 937.666667 2036 92.452667 1 2458 3 chr4A.!!$R1 2457
2 TraesCS4D01G188800 chr4B 408178006 408181686 3680 False 1188.000000 1842 93.220667 21 2715 3 chr4B.!!$F1 2694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 3378 0.249447 CTGTCGACACCTGCTGACAA 60.249 55.0 15.76 0.0 40.5 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2849 5355 0.0293 CGGGCCTTGTATTTGCATCG 59.971 55.0 0.84 0.0 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 4.081420 TCAGGGAAGAAGACACTGCTAATC 60.081 45.833 0.00 0.00 0.00 1.75
177 178 2.741985 TGGCACGACTTCCATGCG 60.742 61.111 0.00 0.00 40.37 4.73
179 180 3.499737 GCACGACTTCCATGCGGG 61.500 66.667 0.00 0.00 38.37 6.13
196 208 6.347644 CCATGCGGGCGATATAAATGTATATG 60.348 42.308 0.00 0.00 33.77 1.78
242 254 6.453092 AGTCCTTGCAATCTTTGAAGAATTG 58.547 36.000 0.00 5.00 38.77 2.32
344 358 5.541845 AGGCTTAACTTTGGCTTTGAAATC 58.458 37.500 0.00 0.00 35.50 2.17
376 403 4.454504 CACCACGTAACTTAGCAAATCCTT 59.545 41.667 0.00 0.00 0.00 3.36
511 728 7.546667 CCAAAATGCACTAAAATGCTACATCTT 59.453 33.333 0.00 0.00 46.28 2.40
602 964 6.595716 AGAGCGTAGATTCACTTATTTTGCTT 59.404 34.615 0.00 0.00 0.00 3.91
615 977 9.329913 CACTTATTTTGCTTTGTATGTAGTCAC 57.670 33.333 0.00 0.00 0.00 3.67
673 1555 6.038997 ACAGAGGGAGTATTTGTAAGTCAC 57.961 41.667 0.00 0.00 0.00 3.67
700 1582 8.747471 CATCAGACCTAAGCATCTAGATTCATA 58.253 37.037 1.33 0.00 0.00 2.15
744 1930 5.720371 AGGAGATGAGATGACCTTTATCG 57.280 43.478 0.00 0.00 0.00 2.92
881 3378 0.249447 CTGTCGACACCTGCTGACAA 60.249 55.000 15.76 0.00 40.50 3.18
1171 3668 0.325933 TTACCTCCTCGAGACGGACA 59.674 55.000 21.85 9.73 0.00 4.02
1214 3711 2.993853 GGTGGAAGGCTCCTCTGG 59.006 66.667 0.00 0.00 42.94 3.86
1558 4055 4.812476 TGGATGTCGGCTTCGCGG 62.812 66.667 6.13 0.00 0.00 6.46
1821 4318 2.438434 GCATTAGGCGGCAGTGGT 60.438 61.111 13.08 0.00 0.00 4.16
1869 4366 1.605058 GCTTCGCCCCTCAGACTACA 61.605 60.000 0.00 0.00 0.00 2.74
1911 4408 2.115266 GGGTGAGGTGTGGTTGGG 59.885 66.667 0.00 0.00 0.00 4.12
1916 4413 2.224917 GGTGAGGTGTGGTTGGGATTTA 60.225 50.000 0.00 0.00 0.00 1.40
1917 4414 3.081804 GTGAGGTGTGGTTGGGATTTAG 58.918 50.000 0.00 0.00 0.00 1.85
1923 4420 5.016831 GGTGTGGTTGGGATTTAGAAGATT 58.983 41.667 0.00 0.00 0.00 2.40
1924 4421 5.105756 GGTGTGGTTGGGATTTAGAAGATTG 60.106 44.000 0.00 0.00 0.00 2.67
1925 4422 4.462483 TGTGGTTGGGATTTAGAAGATTGC 59.538 41.667 0.00 0.00 0.00 3.56
1950 4449 5.389859 TGTAAAGTTTGGAGATTGCATGG 57.610 39.130 0.00 0.00 0.00 3.66
1951 4450 3.323751 AAAGTTTGGAGATTGCATGGC 57.676 42.857 0.00 0.00 0.00 4.40
1952 4451 1.188863 AGTTTGGAGATTGCATGGCC 58.811 50.000 0.00 0.00 0.00 5.36
1953 4452 1.188863 GTTTGGAGATTGCATGGCCT 58.811 50.000 3.32 0.00 0.00 5.19
1954 4453 1.551883 GTTTGGAGATTGCATGGCCTT 59.448 47.619 3.32 0.00 0.00 4.35
1955 4454 1.477553 TTGGAGATTGCATGGCCTTC 58.522 50.000 3.32 0.00 0.00 3.46
1956 4455 0.396139 TGGAGATTGCATGGCCTTCC 60.396 55.000 3.32 0.00 0.00 3.46
1957 4456 1.450531 GGAGATTGCATGGCCTTCCG 61.451 60.000 3.32 0.00 34.14 4.30
1958 4457 0.749454 GAGATTGCATGGCCTTCCGT 60.749 55.000 3.32 0.00 34.14 4.69
1959 4458 0.323725 AGATTGCATGGCCTTCCGTT 60.324 50.000 3.32 0.00 34.14 4.44
1960 4459 0.179129 GATTGCATGGCCTTCCGTTG 60.179 55.000 3.32 0.00 34.14 4.10
1961 4460 0.899717 ATTGCATGGCCTTCCGTTGT 60.900 50.000 3.32 0.00 34.14 3.32
1962 4461 1.523154 TTGCATGGCCTTCCGTTGTC 61.523 55.000 3.32 0.00 34.14 3.18
1963 4462 1.675641 GCATGGCCTTCCGTTGTCT 60.676 57.895 3.32 0.00 34.14 3.41
1964 4463 1.244019 GCATGGCCTTCCGTTGTCTT 61.244 55.000 3.32 0.00 34.14 3.01
1965 4464 1.247567 CATGGCCTTCCGTTGTCTTT 58.752 50.000 3.32 0.00 34.14 2.52
1966 4465 1.200020 CATGGCCTTCCGTTGTCTTTC 59.800 52.381 3.32 0.00 34.14 2.62
1967 4466 0.472471 TGGCCTTCCGTTGTCTTTCT 59.528 50.000 3.32 0.00 34.14 2.52
1968 4467 1.695242 TGGCCTTCCGTTGTCTTTCTA 59.305 47.619 3.32 0.00 34.14 2.10
1969 4468 2.289444 TGGCCTTCCGTTGTCTTTCTAG 60.289 50.000 3.32 0.00 34.14 2.43
1970 4469 2.028385 GGCCTTCCGTTGTCTTTCTAGA 60.028 50.000 0.00 0.00 0.00 2.43
1971 4470 3.254892 GCCTTCCGTTGTCTTTCTAGAG 58.745 50.000 0.00 0.00 0.00 2.43
1972 4471 3.056749 GCCTTCCGTTGTCTTTCTAGAGA 60.057 47.826 0.00 0.00 0.00 3.10
1973 4472 4.560919 GCCTTCCGTTGTCTTTCTAGAGAA 60.561 45.833 0.00 0.00 31.78 2.87
1974 4473 5.725362 CCTTCCGTTGTCTTTCTAGAGAAT 58.275 41.667 0.00 0.00 36.24 2.40
1975 4474 6.166982 CCTTCCGTTGTCTTTCTAGAGAATT 58.833 40.000 0.00 0.00 36.24 2.17
1976 4475 6.311690 CCTTCCGTTGTCTTTCTAGAGAATTC 59.688 42.308 0.00 0.00 36.24 2.17
1977 4476 6.340962 TCCGTTGTCTTTCTAGAGAATTCA 57.659 37.500 8.44 0.00 36.24 2.57
1978 4477 6.755206 TCCGTTGTCTTTCTAGAGAATTCAA 58.245 36.000 8.44 0.00 36.24 2.69
1979 4478 6.645415 TCCGTTGTCTTTCTAGAGAATTCAAC 59.355 38.462 8.44 16.18 36.24 3.18
1980 4479 6.647067 CCGTTGTCTTTCTAGAGAATTCAACT 59.353 38.462 8.44 9.06 36.24 3.16
1981 4480 7.813148 CCGTTGTCTTTCTAGAGAATTCAACTA 59.187 37.037 8.44 9.70 36.24 2.24
1982 4481 9.193133 CGTTGTCTTTCTAGAGAATTCAACTAA 57.807 33.333 8.44 0.00 36.24 2.24
1991 4490 9.716556 TCTAGAGAATTCAACTAAATACTCCCT 57.283 33.333 8.44 0.00 0.00 4.20
1992 4491 9.974980 CTAGAGAATTCAACTAAATACTCCCTC 57.025 37.037 8.44 0.00 0.00 4.30
1993 4492 8.616799 AGAGAATTCAACTAAATACTCCCTCT 57.383 34.615 8.44 0.00 0.00 3.69
1994 4493 8.482128 AGAGAATTCAACTAAATACTCCCTCTG 58.518 37.037 8.44 0.00 0.00 3.35
1995 4494 8.152023 AGAATTCAACTAAATACTCCCTCTGT 57.848 34.615 8.44 0.00 0.00 3.41
1996 4495 8.606830 AGAATTCAACTAAATACTCCCTCTGTT 58.393 33.333 8.44 0.00 0.00 3.16
1997 4496 8.794335 AATTCAACTAAATACTCCCTCTGTTC 57.206 34.615 0.00 0.00 0.00 3.18
1998 4497 6.295719 TCAACTAAATACTCCCTCTGTTCC 57.704 41.667 0.00 0.00 0.00 3.62
1999 4498 6.023603 TCAACTAAATACTCCCTCTGTTCCT 58.976 40.000 0.00 0.00 0.00 3.36
2000 4499 7.186972 TCAACTAAATACTCCCTCTGTTCCTA 58.813 38.462 0.00 0.00 0.00 2.94
2001 4500 7.676893 TCAACTAAATACTCCCTCTGTTCCTAA 59.323 37.037 0.00 0.00 0.00 2.69
2002 4501 8.319146 CAACTAAATACTCCCTCTGTTCCTAAA 58.681 37.037 0.00 0.00 0.00 1.85
2003 4502 8.625467 ACTAAATACTCCCTCTGTTCCTAAAT 57.375 34.615 0.00 0.00 0.00 1.40
2004 4503 9.725206 ACTAAATACTCCCTCTGTTCCTAAATA 57.275 33.333 0.00 0.00 0.00 1.40
2009 4508 9.900112 ATACTCCCTCTGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 0.00 2.24
2010 4509 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2011 4510 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2012 4511 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2013 4512 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2014 4513 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2033 4532 9.745018 AGTCTTTTTAGAGATTCCATCAAATGA 57.255 29.630 0.00 0.00 0.00 2.57
2034 4533 9.780413 GTCTTTTTAGAGATTCCATCAAATGAC 57.220 33.333 0.00 0.00 0.00 3.06
2035 4534 9.745018 TCTTTTTAGAGATTCCATCAAATGACT 57.255 29.630 0.00 0.00 0.00 3.41
2038 4537 9.958180 TTTTAGAGATTCCATCAAATGACTACA 57.042 29.630 0.00 0.00 0.00 2.74
2042 4541 7.869937 AGAGATTCCATCAAATGACTACATACG 59.130 37.037 0.00 0.00 35.50 3.06
2043 4542 6.931281 AGATTCCATCAAATGACTACATACGG 59.069 38.462 0.00 0.00 35.50 4.02
2044 4543 5.862678 TCCATCAAATGACTACATACGGA 57.137 39.130 0.00 0.00 35.50 4.69
2045 4544 5.842907 TCCATCAAATGACTACATACGGAG 58.157 41.667 0.00 0.00 35.50 4.63
2046 4545 4.449068 CCATCAAATGACTACATACGGAGC 59.551 45.833 0.00 0.00 35.50 4.70
2047 4546 4.729227 TCAAATGACTACATACGGAGCA 57.271 40.909 0.00 0.00 35.50 4.26
2048 4547 5.079689 TCAAATGACTACATACGGAGCAA 57.920 39.130 0.00 0.00 35.50 3.91
2049 4548 5.483811 TCAAATGACTACATACGGAGCAAA 58.516 37.500 0.00 0.00 35.50 3.68
2050 4549 5.935206 TCAAATGACTACATACGGAGCAAAA 59.065 36.000 0.00 0.00 35.50 2.44
2051 4550 6.597672 TCAAATGACTACATACGGAGCAAAAT 59.402 34.615 0.00 0.00 35.50 1.82
2052 4551 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
2053 4552 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
2054 4553 5.483811 TGACTACATACGGAGCAAAATGAA 58.516 37.500 0.00 0.00 0.00 2.57
2055 4554 6.112734 TGACTACATACGGAGCAAAATGAAT 58.887 36.000 0.00 0.00 0.00 2.57
2056 4555 7.269316 TGACTACATACGGAGCAAAATGAATA 58.731 34.615 0.00 0.00 0.00 1.75
2057 4556 7.766738 TGACTACATACGGAGCAAAATGAATAA 59.233 33.333 0.00 0.00 0.00 1.40
2058 4557 8.500753 ACTACATACGGAGCAAAATGAATAAA 57.499 30.769 0.00 0.00 0.00 1.40
2059 4558 9.120538 ACTACATACGGAGCAAAATGAATAAAT 57.879 29.630 0.00 0.00 0.00 1.40
2060 4559 9.599322 CTACATACGGAGCAAAATGAATAAATC 57.401 33.333 0.00 0.00 0.00 2.17
2061 4560 8.225603 ACATACGGAGCAAAATGAATAAATCT 57.774 30.769 0.00 0.00 0.00 2.40
2062 4561 9.337396 ACATACGGAGCAAAATGAATAAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
2063 4562 9.599322 CATACGGAGCAAAATGAATAAATCTAC 57.401 33.333 0.00 0.00 0.00 2.59
2064 4563 7.624360 ACGGAGCAAAATGAATAAATCTACA 57.376 32.000 0.00 0.00 0.00 2.74
2065 4564 7.472543 ACGGAGCAAAATGAATAAATCTACAC 58.527 34.615 0.00 0.00 0.00 2.90
2066 4565 7.336931 ACGGAGCAAAATGAATAAATCTACACT 59.663 33.333 0.00 0.00 0.00 3.55
2067 4566 7.852945 CGGAGCAAAATGAATAAATCTACACTC 59.147 37.037 0.00 0.00 0.00 3.51
2068 4567 8.897752 GGAGCAAAATGAATAAATCTACACTCT 58.102 33.333 0.00 0.00 0.00 3.24
2114 4613 9.859427 CTGTATGTTGTATTCCATTTGAAATGT 57.141 29.630 15.93 1.43 36.33 2.71
2115 4614 9.853555 TGTATGTTGTATTCCATTTGAAATGTC 57.146 29.630 15.93 3.21 36.33 3.06
2144 4643 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
2145 4644 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2146 4645 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2147 4646 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2148 4647 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
2149 4648 9.377238 ACTTATATTTAGGAACGAAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
2152 4651 8.904099 ATATTTAGGAACGAAGGGAGTATTTG 57.096 34.615 0.00 0.00 0.00 2.32
2153 4652 5.750352 TTAGGAACGAAGGGAGTATTTGT 57.250 39.130 0.00 0.00 0.00 2.83
2154 4653 4.203654 AGGAACGAAGGGAGTATTTGTC 57.796 45.455 0.00 0.00 0.00 3.18
2155 4654 3.838903 AGGAACGAAGGGAGTATTTGTCT 59.161 43.478 0.00 0.00 0.00 3.41
2156 4655 4.286291 AGGAACGAAGGGAGTATTTGTCTT 59.714 41.667 0.00 0.00 0.00 3.01
2157 4656 5.001874 GGAACGAAGGGAGTATTTGTCTTT 58.998 41.667 0.00 0.00 0.00 2.52
2158 4657 5.472478 GGAACGAAGGGAGTATTTGTCTTTT 59.528 40.000 0.00 0.00 0.00 2.27
2159 4658 6.016527 GGAACGAAGGGAGTATTTGTCTTTTT 60.017 38.462 0.00 0.00 0.00 1.94
2160 4659 7.173735 GGAACGAAGGGAGTATTTGTCTTTTTA 59.826 37.037 0.00 0.00 0.00 1.52
2161 4660 8.454570 AACGAAGGGAGTATTTGTCTTTTTAA 57.545 30.769 0.00 0.00 0.00 1.52
2162 4661 8.454570 ACGAAGGGAGTATTTGTCTTTTTAAA 57.545 30.769 0.00 0.00 0.00 1.52
2163 4662 8.565416 ACGAAGGGAGTATTTGTCTTTTTAAAG 58.435 33.333 0.00 0.00 37.36 1.85
2164 4663 8.780249 CGAAGGGAGTATTTGTCTTTTTAAAGA 58.220 33.333 0.89 0.89 42.41 2.52
2186 4685 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
2187 4686 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2188 4687 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2189 4688 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2190 4689 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2191 4690 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2192 4691 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2193 4692 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2194 4693 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2195 4694 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2196 4695 7.601130 ACAAGTGACTACATACGAAGCAAAATA 59.399 33.333 0.00 0.00 0.00 1.40
2197 4696 8.440059 CAAGTGACTACATACGAAGCAAAATAA 58.560 33.333 0.00 0.00 0.00 1.40
2198 4697 8.186178 AGTGACTACATACGAAGCAAAATAAG 57.814 34.615 0.00 0.00 0.00 1.73
2199 4698 7.817962 AGTGACTACATACGAAGCAAAATAAGT 59.182 33.333 0.00 0.00 0.00 2.24
2200 4699 7.898309 GTGACTACATACGAAGCAAAATAAGTG 59.102 37.037 0.00 0.00 0.00 3.16
2201 4700 7.815549 TGACTACATACGAAGCAAAATAAGTGA 59.184 33.333 0.00 0.00 0.00 3.41
2202 4701 8.542497 ACTACATACGAAGCAAAATAAGTGAA 57.458 30.769 0.00 0.00 0.00 3.18
2203 4702 9.162764 ACTACATACGAAGCAAAATAAGTGAAT 57.837 29.630 0.00 0.00 0.00 2.57
2204 4703 9.638300 CTACATACGAAGCAAAATAAGTGAATC 57.362 33.333 0.00 0.00 0.00 2.52
2205 4704 8.268850 ACATACGAAGCAAAATAAGTGAATCT 57.731 30.769 0.00 0.00 0.00 2.40
2206 4705 9.378551 ACATACGAAGCAAAATAAGTGAATCTA 57.621 29.630 0.00 0.00 0.00 1.98
2207 4706 9.638300 CATACGAAGCAAAATAAGTGAATCTAC 57.362 33.333 0.00 0.00 0.00 2.59
2208 4707 7.667043 ACGAAGCAAAATAAGTGAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
2209 4708 7.519002 ACGAAGCAAAATAAGTGAATCTACAC 58.481 34.615 0.00 0.00 40.60 2.90
2240 4739 9.999009 AAATATGTCTATATACGTCCGTATGTG 57.001 33.333 19.58 10.80 40.98 3.21
2241 4740 5.868043 TGTCTATATACGTCCGTATGTGG 57.132 43.478 19.58 15.47 40.98 4.17
2242 4741 5.308014 TGTCTATATACGTCCGTATGTGGT 58.692 41.667 19.58 7.88 40.98 4.16
2243 4742 6.463360 TGTCTATATACGTCCGTATGTGGTA 58.537 40.000 19.58 8.37 40.98 3.25
2244 4743 6.591448 TGTCTATATACGTCCGTATGTGGTAG 59.409 42.308 19.58 15.15 40.98 3.18
2245 4744 6.591834 GTCTATATACGTCCGTATGTGGTAGT 59.408 42.308 19.58 0.00 40.98 2.73
2246 4745 5.869753 ATATACGTCCGTATGTGGTAGTC 57.130 43.478 19.58 0.00 40.98 2.59
2247 4746 1.098050 ACGTCCGTATGTGGTAGTCC 58.902 55.000 0.00 0.00 0.00 3.85
2248 4747 1.097232 CGTCCGTATGTGGTAGTCCA 58.903 55.000 0.00 0.00 42.05 4.02
2249 4748 1.679680 CGTCCGTATGTGGTAGTCCAT 59.320 52.381 0.00 0.00 46.20 3.41
2250 4749 2.100252 CGTCCGTATGTGGTAGTCCATT 59.900 50.000 0.00 0.00 46.20 3.16
2251 4750 3.429822 CGTCCGTATGTGGTAGTCCATTT 60.430 47.826 0.00 0.00 46.20 2.32
2252 4751 3.869246 GTCCGTATGTGGTAGTCCATTTG 59.131 47.826 0.00 0.00 46.20 2.32
2253 4752 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2254 4753 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2255 4754 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2256 4755 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2257 4756 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2258 4757 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
2259 4758 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
2260 4759 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2261 4760 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2262 4761 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2263 4762 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2264 4763 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2265 4764 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2269 4768 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
2270 4769 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
2289 4788 9.807921 AAAGACAAATATTTAGAAACAGAGGGA 57.192 29.630 0.00 0.00 0.00 4.20
2322 4821 7.661847 CGCTAGGGGTTTGATTTAGAGAAATAT 59.338 37.037 0.00 0.00 35.33 1.28
2482 4984 8.362464 TCTCTGCTATCTAAACAGAACCTAAA 57.638 34.615 0.00 0.00 39.79 1.85
2497 4999 3.497332 ACCTAAAGTTCCTTTTCCTGCC 58.503 45.455 0.00 0.00 35.21 4.85
2502 5004 1.302192 TTCCTTTTCCTGCCGACGG 60.302 57.895 10.29 10.29 0.00 4.79
2504 5006 2.033194 CCTTTTCCTGCCGACGGAC 61.033 63.158 20.50 9.82 0.00 4.79
2525 5027 1.244019 GCATTCTGCCCACCTTCGTT 61.244 55.000 0.00 0.00 37.42 3.85
2527 5029 0.400213 ATTCTGCCCACCTTCGTTCA 59.600 50.000 0.00 0.00 0.00 3.18
2531 5033 2.106683 GCCCACCTTCGTTCATCCG 61.107 63.158 0.00 0.00 0.00 4.18
2532 5034 1.295423 CCCACCTTCGTTCATCCGT 59.705 57.895 0.00 0.00 0.00 4.69
2541 5043 4.441634 CCTTCGTTCATCCGTCCTATCTTT 60.442 45.833 0.00 0.00 0.00 2.52
2649 5151 8.086851 TCACAATCATCATAATTACATGTCCG 57.913 34.615 0.00 0.00 0.00 4.79
2676 5181 6.206498 GTGTCACACCTTTCCTTAAACAATC 58.794 40.000 0.00 0.00 0.00 2.67
2681 5186 5.010617 ACACCTTTCCTTAAACAATCGCAAT 59.989 36.000 0.00 0.00 0.00 3.56
2715 5221 3.061848 CCCAATGGGCGTCACACC 61.062 66.667 4.89 0.00 35.35 4.16
2716 5222 2.034066 CCAATGGGCGTCACACCT 59.966 61.111 0.00 0.00 0.00 4.00
2717 5223 1.603455 CCAATGGGCGTCACACCTT 60.603 57.895 0.00 0.00 0.00 3.50
2718 5224 1.586154 CCAATGGGCGTCACACCTTC 61.586 60.000 0.00 0.00 0.00 3.46
2719 5225 1.303317 AATGGGCGTCACACCTTCC 60.303 57.895 0.00 0.00 0.00 3.46
2720 5226 2.764637 AATGGGCGTCACACCTTCCC 62.765 60.000 0.00 0.00 37.49 3.97
2721 5227 3.948719 GGGCGTCACACCTTCCCA 61.949 66.667 0.00 0.00 36.96 4.37
2722 5228 2.351276 GGCGTCACACCTTCCCAT 59.649 61.111 0.00 0.00 0.00 4.00
2723 5229 1.600107 GGCGTCACACCTTCCCATA 59.400 57.895 0.00 0.00 0.00 2.74
2724 5230 0.035820 GGCGTCACACCTTCCCATAA 60.036 55.000 0.00 0.00 0.00 1.90
2725 5231 1.612199 GGCGTCACACCTTCCCATAAA 60.612 52.381 0.00 0.00 0.00 1.40
2726 5232 2.156098 GCGTCACACCTTCCCATAAAA 58.844 47.619 0.00 0.00 0.00 1.52
2727 5233 2.752903 GCGTCACACCTTCCCATAAAAT 59.247 45.455 0.00 0.00 0.00 1.82
2728 5234 3.181500 GCGTCACACCTTCCCATAAAATC 60.181 47.826 0.00 0.00 0.00 2.17
2729 5235 4.006989 CGTCACACCTTCCCATAAAATCA 58.993 43.478 0.00 0.00 0.00 2.57
2730 5236 4.142687 CGTCACACCTTCCCATAAAATCAC 60.143 45.833 0.00 0.00 0.00 3.06
2731 5237 4.006989 TCACACCTTCCCATAAAATCACG 58.993 43.478 0.00 0.00 0.00 4.35
2732 5238 3.756434 CACACCTTCCCATAAAATCACGT 59.244 43.478 0.00 0.00 0.00 4.49
2733 5239 4.007659 ACACCTTCCCATAAAATCACGTC 58.992 43.478 0.00 0.00 0.00 4.34
2734 5240 3.377172 CACCTTCCCATAAAATCACGTCC 59.623 47.826 0.00 0.00 0.00 4.79
2735 5241 2.612212 CCTTCCCATAAAATCACGTCCG 59.388 50.000 0.00 0.00 0.00 4.79
2736 5242 3.527533 CTTCCCATAAAATCACGTCCGA 58.472 45.455 0.00 0.00 0.00 4.55
2737 5243 3.613494 TCCCATAAAATCACGTCCGAA 57.387 42.857 0.00 0.00 0.00 4.30
2738 5244 3.527533 TCCCATAAAATCACGTCCGAAG 58.472 45.455 0.00 0.00 0.00 3.79
2739 5245 3.055675 TCCCATAAAATCACGTCCGAAGT 60.056 43.478 0.00 0.00 0.00 3.01
2740 5246 3.308866 CCCATAAAATCACGTCCGAAGTC 59.691 47.826 0.00 0.00 0.00 3.01
2741 5247 3.930229 CCATAAAATCACGTCCGAAGTCA 59.070 43.478 0.00 0.00 0.00 3.41
2742 5248 4.201685 CCATAAAATCACGTCCGAAGTCAC 60.202 45.833 0.00 0.00 0.00 3.67
2743 5249 1.792006 AAATCACGTCCGAAGTCACC 58.208 50.000 0.00 0.00 0.00 4.02
2744 5250 0.966920 AATCACGTCCGAAGTCACCT 59.033 50.000 0.00 0.00 0.00 4.00
2745 5251 0.243907 ATCACGTCCGAAGTCACCTG 59.756 55.000 0.00 0.00 0.00 4.00
2746 5252 2.022129 CACGTCCGAAGTCACCTGC 61.022 63.158 0.00 0.00 0.00 4.85
2747 5253 2.338620 CGTCCGAAGTCACCTGCA 59.661 61.111 0.00 0.00 0.00 4.41
2748 5254 2.022129 CGTCCGAAGTCACCTGCAC 61.022 63.158 0.00 0.00 0.00 4.57
2749 5255 1.668151 GTCCGAAGTCACCTGCACC 60.668 63.158 0.00 0.00 0.00 5.01
2750 5256 2.137528 TCCGAAGTCACCTGCACCA 61.138 57.895 0.00 0.00 0.00 4.17
2751 5257 1.227823 CCGAAGTCACCTGCACCAA 60.228 57.895 0.00 0.00 0.00 3.67
2752 5258 0.817634 CCGAAGTCACCTGCACCAAA 60.818 55.000 0.00 0.00 0.00 3.28
2753 5259 1.021202 CGAAGTCACCTGCACCAAAA 58.979 50.000 0.00 0.00 0.00 2.44
2754 5260 1.608590 CGAAGTCACCTGCACCAAAAT 59.391 47.619 0.00 0.00 0.00 1.82
2755 5261 2.350772 CGAAGTCACCTGCACCAAAATC 60.351 50.000 0.00 0.00 0.00 2.17
2756 5262 2.363306 AGTCACCTGCACCAAAATCA 57.637 45.000 0.00 0.00 0.00 2.57
2757 5263 2.880443 AGTCACCTGCACCAAAATCAT 58.120 42.857 0.00 0.00 0.00 2.45
2758 5264 4.032960 AGTCACCTGCACCAAAATCATA 57.967 40.909 0.00 0.00 0.00 2.15
2759 5265 4.012374 AGTCACCTGCACCAAAATCATAG 58.988 43.478 0.00 0.00 0.00 2.23
2760 5266 3.758554 GTCACCTGCACCAAAATCATAGT 59.241 43.478 0.00 0.00 0.00 2.12
2761 5267 4.009675 TCACCTGCACCAAAATCATAGTC 58.990 43.478 0.00 0.00 0.00 2.59
2762 5268 4.012374 CACCTGCACCAAAATCATAGTCT 58.988 43.478 0.00 0.00 0.00 3.24
2763 5269 4.460382 CACCTGCACCAAAATCATAGTCTT 59.540 41.667 0.00 0.00 0.00 3.01
2764 5270 5.647658 CACCTGCACCAAAATCATAGTCTTA 59.352 40.000 0.00 0.00 0.00 2.10
2765 5271 5.882557 ACCTGCACCAAAATCATAGTCTTAG 59.117 40.000 0.00 0.00 0.00 2.18
2766 5272 5.297776 CCTGCACCAAAATCATAGTCTTAGG 59.702 44.000 0.00 0.00 0.00 2.69
2767 5273 6.061022 TGCACCAAAATCATAGTCTTAGGA 57.939 37.500 0.00 0.00 0.00 2.94
2768 5274 5.880332 TGCACCAAAATCATAGTCTTAGGAC 59.120 40.000 0.00 0.00 42.41 3.85
2769 5275 5.880332 GCACCAAAATCATAGTCTTAGGACA 59.120 40.000 7.82 0.00 44.36 4.02
2770 5276 6.543831 GCACCAAAATCATAGTCTTAGGACAT 59.456 38.462 7.82 0.00 44.36 3.06
2771 5277 7.254932 GCACCAAAATCATAGTCTTAGGACATC 60.255 40.741 7.82 0.00 44.36 3.06
2772 5278 6.986817 ACCAAAATCATAGTCTTAGGACATCG 59.013 38.462 7.82 0.00 44.36 3.84
2773 5279 7.147724 ACCAAAATCATAGTCTTAGGACATCGA 60.148 37.037 7.82 0.66 44.36 3.59
2774 5280 7.710907 CCAAAATCATAGTCTTAGGACATCGAA 59.289 37.037 7.82 0.00 44.36 3.71
2775 5281 8.543774 CAAAATCATAGTCTTAGGACATCGAAC 58.456 37.037 7.82 0.00 44.36 3.95
2776 5282 6.961360 ATCATAGTCTTAGGACATCGAACA 57.039 37.500 7.82 0.00 44.36 3.18
2777 5283 6.132791 TCATAGTCTTAGGACATCGAACAC 57.867 41.667 7.82 0.00 44.36 3.32
2778 5284 3.489180 AGTCTTAGGACATCGAACACG 57.511 47.619 7.82 0.00 44.36 4.49
2779 5285 3.079578 AGTCTTAGGACATCGAACACGA 58.920 45.455 7.82 0.00 44.36 4.35
2780 5286 3.127203 AGTCTTAGGACATCGAACACGAG 59.873 47.826 7.82 0.00 44.36 4.18
2781 5287 2.159421 TCTTAGGACATCGAACACGAGC 60.159 50.000 0.00 0.00 39.38 5.03
2782 5288 1.170442 TAGGACATCGAACACGAGCA 58.830 50.000 0.00 0.00 39.38 4.26
2783 5289 0.388649 AGGACATCGAACACGAGCAC 60.389 55.000 0.00 0.00 39.38 4.40
2784 5290 1.674611 GGACATCGAACACGAGCACG 61.675 60.000 0.76 0.76 45.75 5.34
2785 5291 1.674611 GACATCGAACACGAGCACGG 61.675 60.000 8.74 0.00 44.46 4.94
2786 5292 1.443702 CATCGAACACGAGCACGGA 60.444 57.895 8.74 0.00 44.46 4.69
2787 5293 1.154016 ATCGAACACGAGCACGGAG 60.154 57.895 8.74 2.52 44.46 4.63
2788 5294 2.543687 ATCGAACACGAGCACGGAGG 62.544 60.000 8.74 0.00 44.46 4.30
2789 5295 3.112709 GAACACGAGCACGGAGGC 61.113 66.667 8.74 0.00 44.46 4.70
2818 5324 3.785499 CGACGCGGAGACACGAGA 61.785 66.667 12.47 0.00 38.38 4.04
2819 5325 2.098680 GACGCGGAGACACGAGAG 59.901 66.667 12.47 0.00 38.38 3.20
2821 5327 2.185103 GACGCGGAGACACGAGAGTT 62.185 60.000 12.47 0.00 46.40 3.01
2822 5328 1.081376 CGCGGAGACACGAGAGTTT 60.081 57.895 0.00 0.00 46.40 2.66
2823 5329 0.663568 CGCGGAGACACGAGAGTTTT 60.664 55.000 0.00 0.00 46.40 2.43
2824 5330 1.400629 CGCGGAGACACGAGAGTTTTA 60.401 52.381 0.00 0.00 46.40 1.52
2825 5331 2.669364 GCGGAGACACGAGAGTTTTAA 58.331 47.619 0.00 0.00 46.40 1.52
2826 5332 3.054878 GCGGAGACACGAGAGTTTTAAA 58.945 45.455 0.00 0.00 46.40 1.52
2827 5333 3.492011 GCGGAGACACGAGAGTTTTAAAA 59.508 43.478 0.00 0.00 46.40 1.52
2828 5334 4.607778 GCGGAGACACGAGAGTTTTAAAAC 60.608 45.833 21.06 21.06 46.40 2.43
2829 5335 4.374707 CGGAGACACGAGAGTTTTAAAACG 60.375 45.833 22.04 14.39 46.40 3.60
2830 5336 4.084693 GGAGACACGAGAGTTTTAAAACGG 60.085 45.833 22.04 15.71 46.40 4.44
2831 5337 3.805971 AGACACGAGAGTTTTAAAACGGG 59.194 43.478 22.04 15.30 46.40 5.28
2832 5338 2.288729 ACACGAGAGTTTTAAAACGGGC 59.711 45.455 22.04 16.15 46.40 6.13
2833 5339 1.875514 ACGAGAGTTTTAAAACGGGCC 59.124 47.619 22.04 13.88 46.40 5.80
2834 5340 1.874872 CGAGAGTTTTAAAACGGGCCA 59.125 47.619 22.04 0.00 43.51 5.36
2835 5341 2.291190 CGAGAGTTTTAAAACGGGCCAA 59.709 45.455 22.04 0.00 43.51 4.52
2836 5342 3.243134 CGAGAGTTTTAAAACGGGCCAAA 60.243 43.478 22.04 0.00 43.51 3.28
2837 5343 4.684877 GAGAGTTTTAAAACGGGCCAAAA 58.315 39.130 22.04 0.00 43.51 2.44
2838 5344 4.689071 AGAGTTTTAAAACGGGCCAAAAG 58.311 39.130 22.04 0.00 43.51 2.27
2839 5345 4.403113 AGAGTTTTAAAACGGGCCAAAAGA 59.597 37.500 22.04 0.00 43.51 2.52
2840 5346 5.087391 AGTTTTAAAACGGGCCAAAAGAA 57.913 34.783 22.04 0.00 43.51 2.52
2841 5347 5.113383 AGTTTTAAAACGGGCCAAAAGAAG 58.887 37.500 22.04 0.00 43.51 2.85
2842 5348 2.804697 TAAAACGGGCCAAAAGAAGC 57.195 45.000 4.39 0.00 0.00 3.86
2843 5349 0.827368 AAAACGGGCCAAAAGAAGCA 59.173 45.000 4.39 0.00 0.00 3.91
2844 5350 0.104120 AAACGGGCCAAAAGAAGCAC 59.896 50.000 4.39 0.00 0.00 4.40
2846 5352 2.049156 GGGCCAAAAGAAGCACGC 60.049 61.111 4.39 0.00 0.00 5.34
2847 5353 2.727544 GGCCAAAAGAAGCACGCA 59.272 55.556 0.00 0.00 0.00 5.24
2848 5354 1.372128 GGCCAAAAGAAGCACGCAG 60.372 57.895 0.00 0.00 0.00 5.18
2849 5355 2.018324 GCCAAAAGAAGCACGCAGC 61.018 57.895 0.00 0.00 46.19 5.25
2858 5364 2.202518 GCACGCAGCGATGCAAAT 60.203 55.556 26.87 7.40 41.65 2.32
2859 5365 1.062365 GCACGCAGCGATGCAAATA 59.938 52.632 26.87 0.00 41.65 1.40
2860 5366 1.196130 GCACGCAGCGATGCAAATAC 61.196 55.000 26.87 5.92 41.65 1.89
2861 5367 0.096802 CACGCAGCGATGCAAATACA 59.903 50.000 26.87 0.00 34.41 2.29
2862 5368 0.801872 ACGCAGCGATGCAAATACAA 59.198 45.000 26.87 0.00 34.41 2.41
2863 5369 1.202065 ACGCAGCGATGCAAATACAAG 60.202 47.619 26.87 8.94 34.41 3.16
2864 5370 1.831343 GCAGCGATGCAAATACAAGG 58.169 50.000 22.72 0.00 34.41 3.61
2865 5371 1.831343 CAGCGATGCAAATACAAGGC 58.169 50.000 0.00 0.00 0.00 4.35
2866 5372 0.740737 AGCGATGCAAATACAAGGCC 59.259 50.000 0.00 0.00 0.00 5.19
2867 5373 0.249031 GCGATGCAAATACAAGGCCC 60.249 55.000 0.00 0.00 0.00 5.80
2868 5374 0.029300 CGATGCAAATACAAGGCCCG 59.971 55.000 0.00 0.00 0.00 6.13
2869 5375 1.388547 GATGCAAATACAAGGCCCGA 58.611 50.000 0.00 0.00 0.00 5.14
2870 5376 1.748493 GATGCAAATACAAGGCCCGAA 59.252 47.619 0.00 0.00 0.00 4.30
2871 5377 1.173043 TGCAAATACAAGGCCCGAAG 58.827 50.000 0.00 0.00 0.00 3.79
2872 5378 0.179137 GCAAATACAAGGCCCGAAGC 60.179 55.000 0.00 0.00 42.60 3.86
2881 5387 2.505982 GCCCGAAGCCAGAGCATA 59.494 61.111 0.00 0.00 43.56 3.14
2882 5388 1.596477 GCCCGAAGCCAGAGCATAG 60.596 63.158 0.00 0.00 43.56 2.23
2883 5389 2.032860 GCCCGAAGCCAGAGCATAGA 62.033 60.000 0.00 0.00 43.56 1.98
2884 5390 0.033228 CCCGAAGCCAGAGCATAGAG 59.967 60.000 0.00 0.00 43.56 2.43
2885 5391 0.599728 CCGAAGCCAGAGCATAGAGC 60.600 60.000 0.00 0.00 43.56 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.488651 AACTTCTTAATTTATGTACTCCCACG 57.511 34.615 0.00 0.00 0.00 4.94
103 104 2.732597 GCAGTGTGACGGACTAGCTTAG 60.733 54.545 0.00 0.00 0.00 2.18
177 178 7.409697 CAAGCACATATACATTTATATCGCCC 58.590 38.462 6.33 0.00 31.71 6.13
179 180 7.688372 AGCAAGCACATATACATTTATATCGC 58.312 34.615 0.00 3.23 29.63 4.58
196 208 7.042658 GGACTACTTATACATACAAGCAAGCAC 60.043 40.741 0.00 0.00 0.00 4.40
344 358 0.309612 GTTACGTGGTGTTTGGCCAG 59.690 55.000 5.11 0.00 36.57 4.85
526 743 9.613428 TGTGGTAGTCCATTTGAAATATCTAAG 57.387 33.333 0.00 0.00 46.20 2.18
532 749 8.544622 TCTGTATGTGGTAGTCCATTTGAAATA 58.455 33.333 0.00 0.00 46.20 1.40
647 1529 6.497259 TGACTTACAAATACTCCCTCTGTTCT 59.503 38.462 0.00 0.00 0.00 3.01
673 1555 5.999205 ATCTAGATGCTTAGGTCTGATGG 57.001 43.478 3.89 0.00 0.00 3.51
726 1632 6.686630 AGTCATCGATAAAGGTCATCTCATC 58.313 40.000 0.00 0.00 0.00 2.92
800 3291 7.171630 ACAGAACGTTCCAACTATCTAAGAT 57.828 36.000 24.22 0.00 0.00 2.40
881 3378 0.321653 GCGGTGGAGTGGTCAAGAAT 60.322 55.000 0.00 0.00 0.00 2.40
1214 3711 1.534175 CGTTAGGCTCGTCATCCAGAC 60.534 57.143 0.00 0.00 44.02 3.51
1237 3734 3.716006 CGCCGTTGAGCTGGTGTG 61.716 66.667 0.00 0.00 0.00 3.82
1266 3763 0.976641 TGTCCTTGATCTCCGCAAGT 59.023 50.000 0.00 0.00 40.79 3.16
1524 4021 3.755112 TCCACGATGTACCTTGTTTCA 57.245 42.857 0.00 0.00 0.00 2.69
1558 4055 2.357034 TGCGACCTCAAACTCCGC 60.357 61.111 0.00 0.00 45.28 5.54
1869 4366 2.989824 CCTGACGACGTCCCCACT 60.990 66.667 24.33 0.00 0.00 4.00
1916 4413 8.103305 TCTCCAAACTTTACATAGCAATCTTCT 58.897 33.333 0.00 0.00 0.00 2.85
1917 4414 8.268850 TCTCCAAACTTTACATAGCAATCTTC 57.731 34.615 0.00 0.00 0.00 2.87
1923 4420 5.709631 TGCAATCTCCAAACTTTACATAGCA 59.290 36.000 0.00 0.00 0.00 3.49
1924 4421 6.194796 TGCAATCTCCAAACTTTACATAGC 57.805 37.500 0.00 0.00 0.00 2.97
1925 4422 7.198390 CCATGCAATCTCCAAACTTTACATAG 58.802 38.462 0.00 0.00 0.00 2.23
1939 4438 0.749454 ACGGAAGGCCATGCAATCTC 60.749 55.000 5.01 0.00 0.00 2.75
1950 4449 3.056749 TCTCTAGAAAGACAACGGAAGGC 60.057 47.826 0.00 0.00 0.00 4.35
1951 4450 4.785511 TCTCTAGAAAGACAACGGAAGG 57.214 45.455 0.00 0.00 0.00 3.46
1952 4451 6.868864 TGAATTCTCTAGAAAGACAACGGAAG 59.131 38.462 7.05 0.00 37.61 3.46
1953 4452 6.755206 TGAATTCTCTAGAAAGACAACGGAA 58.245 36.000 7.05 0.00 37.61 4.30
1954 4453 6.340962 TGAATTCTCTAGAAAGACAACGGA 57.659 37.500 7.05 0.00 37.61 4.69
1955 4454 6.647067 AGTTGAATTCTCTAGAAAGACAACGG 59.353 38.462 20.54 0.00 42.54 4.44
1956 4455 7.644986 AGTTGAATTCTCTAGAAAGACAACG 57.355 36.000 20.54 0.00 42.54 4.10
1965 4464 9.716556 AGGGAGTATTTAGTTGAATTCTCTAGA 57.283 33.333 7.05 5.66 35.21 2.43
1966 4465 9.974980 GAGGGAGTATTTAGTTGAATTCTCTAG 57.025 37.037 7.05 0.00 35.21 2.43
1967 4466 9.716556 AGAGGGAGTATTTAGTTGAATTCTCTA 57.283 33.333 7.05 6.89 35.21 2.43
1968 4467 8.482128 CAGAGGGAGTATTTAGTTGAATTCTCT 58.518 37.037 7.05 7.82 35.21 3.10
1969 4468 8.261522 ACAGAGGGAGTATTTAGTTGAATTCTC 58.738 37.037 7.05 0.25 34.54 2.87
1970 4469 8.152023 ACAGAGGGAGTATTTAGTTGAATTCT 57.848 34.615 7.05 0.00 0.00 2.40
1971 4470 8.794335 AACAGAGGGAGTATTTAGTTGAATTC 57.206 34.615 0.00 0.00 0.00 2.17
1972 4471 7.829706 GGAACAGAGGGAGTATTTAGTTGAATT 59.170 37.037 0.00 0.00 0.00 2.17
1973 4472 7.182930 AGGAACAGAGGGAGTATTTAGTTGAAT 59.817 37.037 0.00 0.00 0.00 2.57
1974 4473 6.500751 AGGAACAGAGGGAGTATTTAGTTGAA 59.499 38.462 0.00 0.00 0.00 2.69
1975 4474 6.023603 AGGAACAGAGGGAGTATTTAGTTGA 58.976 40.000 0.00 0.00 0.00 3.18
1976 4475 6.301169 AGGAACAGAGGGAGTATTTAGTTG 57.699 41.667 0.00 0.00 0.00 3.16
1977 4476 8.445361 TTTAGGAACAGAGGGAGTATTTAGTT 57.555 34.615 0.00 0.00 0.00 2.24
1978 4477 8.625467 ATTTAGGAACAGAGGGAGTATTTAGT 57.375 34.615 0.00 0.00 0.00 2.24
1983 4482 9.900112 ACTTATATTTAGGAACAGAGGGAGTAT 57.100 33.333 0.00 0.00 0.00 2.12
1984 4483 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
1985 4484 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
1986 4485 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
1987 4486 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
1988 4487 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
2007 4506 9.745018 TCATTTGATGGAATCTCTAAAAAGACT 57.255 29.630 0.00 0.00 45.81 3.24
2008 4507 9.780413 GTCATTTGATGGAATCTCTAAAAAGAC 57.220 33.333 0.00 0.00 45.81 3.01
2009 4508 9.745018 AGTCATTTGATGGAATCTCTAAAAAGA 57.255 29.630 0.00 0.00 45.81 2.52
2012 4511 9.958180 TGTAGTCATTTGATGGAATCTCTAAAA 57.042 29.630 0.00 0.00 45.81 1.52
2016 4515 7.869937 CGTATGTAGTCATTTGATGGAATCTCT 59.130 37.037 0.00 0.00 38.61 3.10
2017 4516 7.116948 CCGTATGTAGTCATTTGATGGAATCTC 59.883 40.741 0.00 0.00 38.61 2.75
2018 4517 6.931281 CCGTATGTAGTCATTTGATGGAATCT 59.069 38.462 0.00 0.00 38.61 2.40
2019 4518 6.929049 TCCGTATGTAGTCATTTGATGGAATC 59.071 38.462 0.00 0.00 38.44 2.52
2020 4519 6.826668 TCCGTATGTAGTCATTTGATGGAAT 58.173 36.000 0.00 0.00 35.70 3.01
2021 4520 6.228616 TCCGTATGTAGTCATTTGATGGAA 57.771 37.500 0.00 0.00 35.70 3.53
2022 4521 5.739070 GCTCCGTATGTAGTCATTTGATGGA 60.739 44.000 0.00 0.00 35.70 3.41
2023 4522 4.449068 GCTCCGTATGTAGTCATTTGATGG 59.551 45.833 0.00 0.00 35.70 3.51
2024 4523 5.049828 TGCTCCGTATGTAGTCATTTGATG 58.950 41.667 0.00 0.00 35.70 3.07
2025 4524 5.276461 TGCTCCGTATGTAGTCATTTGAT 57.724 39.130 0.00 0.00 35.70 2.57
2026 4525 4.729227 TGCTCCGTATGTAGTCATTTGA 57.271 40.909 0.00 0.00 35.70 2.69
2027 4526 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
2028 4527 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
2029 4528 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
2030 4529 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
2031 4530 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2032 4531 6.604735 ATTCATTTTGCTCCGTATGTAGTC 57.395 37.500 0.00 0.00 0.00 2.59
2033 4532 8.500753 TTTATTCATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
2034 4533 9.599322 GATTTATTCATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
2035 4534 9.337396 AGATTTATTCATTTTGCTCCGTATGTA 57.663 29.630 0.00 0.00 0.00 2.29
2036 4535 8.225603 AGATTTATTCATTTTGCTCCGTATGT 57.774 30.769 0.00 0.00 0.00 2.29
2037 4536 9.599322 GTAGATTTATTCATTTTGCTCCGTATG 57.401 33.333 0.00 0.00 0.00 2.39
2038 4537 9.337396 TGTAGATTTATTCATTTTGCTCCGTAT 57.663 29.630 0.00 0.00 0.00 3.06
2039 4538 8.609176 GTGTAGATTTATTCATTTTGCTCCGTA 58.391 33.333 0.00 0.00 0.00 4.02
2040 4539 7.336931 AGTGTAGATTTATTCATTTTGCTCCGT 59.663 33.333 0.00 0.00 0.00 4.69
2041 4540 7.697691 AGTGTAGATTTATTCATTTTGCTCCG 58.302 34.615 0.00 0.00 0.00 4.63
2042 4541 8.897752 AGAGTGTAGATTTATTCATTTTGCTCC 58.102 33.333 0.00 0.00 0.00 4.70
2088 4587 9.859427 ACATTTCAAATGGAATACAACATACAG 57.141 29.630 14.70 0.00 34.91 2.74
2089 4588 9.853555 GACATTTCAAATGGAATACAACATACA 57.146 29.630 14.70 0.00 34.91 2.29
2118 4617 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2119 4618 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2120 4619 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2121 4620 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2122 4621 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2123 4622 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2126 4625 9.991906 CAAATACTCCCTTCGTTCCTAAATATA 57.008 33.333 0.00 0.00 0.00 0.86
2127 4626 8.491958 ACAAATACTCCCTTCGTTCCTAAATAT 58.508 33.333 0.00 0.00 0.00 1.28
2128 4627 7.854337 ACAAATACTCCCTTCGTTCCTAAATA 58.146 34.615 0.00 0.00 0.00 1.40
2129 4628 6.718294 ACAAATACTCCCTTCGTTCCTAAAT 58.282 36.000 0.00 0.00 0.00 1.40
2130 4629 6.013984 AGACAAATACTCCCTTCGTTCCTAAA 60.014 38.462 0.00 0.00 0.00 1.85
2131 4630 5.482878 AGACAAATACTCCCTTCGTTCCTAA 59.517 40.000 0.00 0.00 0.00 2.69
2132 4631 5.021458 AGACAAATACTCCCTTCGTTCCTA 58.979 41.667 0.00 0.00 0.00 2.94
2133 4632 3.838903 AGACAAATACTCCCTTCGTTCCT 59.161 43.478 0.00 0.00 0.00 3.36
2134 4633 4.203654 AGACAAATACTCCCTTCGTTCC 57.796 45.455 0.00 0.00 0.00 3.62
2135 4634 6.555812 AAAAGACAAATACTCCCTTCGTTC 57.444 37.500 0.00 0.00 0.00 3.95
2136 4635 6.954487 AAAAAGACAAATACTCCCTTCGTT 57.046 33.333 0.00 0.00 0.00 3.85
2137 4636 8.454570 TTTAAAAAGACAAATACTCCCTTCGT 57.545 30.769 0.00 0.00 0.00 3.85
2138 4637 8.780249 TCTTTAAAAAGACAAATACTCCCTTCG 58.220 33.333 1.00 0.00 39.95 3.79
2160 4659 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
2161 4660 7.870954 TCGTATGTAGTCACTTGTTGAAATCTT 59.129 33.333 0.00 0.00 35.39 2.40
2162 4661 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2163 4662 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2164 4663 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2165 4664 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2166 4665 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2167 4666 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2168 4667 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2169 4668 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2170 4669 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2171 4670 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2172 4671 8.542497 TTATTTTGCTTCGTATGTAGTCACTT 57.458 30.769 0.00 0.00 0.00 3.16
2173 4672 7.817962 ACTTATTTTGCTTCGTATGTAGTCACT 59.182 33.333 0.00 0.00 0.00 3.41
2174 4673 7.898309 CACTTATTTTGCTTCGTATGTAGTCAC 59.102 37.037 0.00 0.00 0.00 3.67
2175 4674 7.815549 TCACTTATTTTGCTTCGTATGTAGTCA 59.184 33.333 0.00 0.00 0.00 3.41
2176 4675 8.181487 TCACTTATTTTGCTTCGTATGTAGTC 57.819 34.615 0.00 0.00 0.00 2.59
2177 4676 8.542497 TTCACTTATTTTGCTTCGTATGTAGT 57.458 30.769 0.00 0.00 0.00 2.73
2178 4677 9.638300 GATTCACTTATTTTGCTTCGTATGTAG 57.362 33.333 0.00 0.00 0.00 2.74
2179 4678 9.378551 AGATTCACTTATTTTGCTTCGTATGTA 57.621 29.630 0.00 0.00 0.00 2.29
2180 4679 8.268850 AGATTCACTTATTTTGCTTCGTATGT 57.731 30.769 0.00 0.00 0.00 2.29
2181 4680 9.638300 GTAGATTCACTTATTTTGCTTCGTATG 57.362 33.333 0.00 0.00 0.00 2.39
2182 4681 9.378551 TGTAGATTCACTTATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 0.00 3.06
2183 4682 8.653338 GTGTAGATTCACTTATTTTGCTTCGTA 58.347 33.333 0.00 0.00 35.68 3.43
2184 4683 7.387948 AGTGTAGATTCACTTATTTTGCTTCGT 59.612 33.333 0.00 0.00 44.92 3.85
2185 4684 7.743104 AGTGTAGATTCACTTATTTTGCTTCG 58.257 34.615 0.00 0.00 44.92 3.79
2186 4685 8.940952 AGAGTGTAGATTCACTTATTTTGCTTC 58.059 33.333 0.98 0.00 46.81 3.86
2187 4686 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
2188 4687 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
2214 4713 9.999009 CACATACGGACGTATATAGACATATTT 57.001 33.333 15.98 0.00 39.07 1.40
2215 4714 8.618677 CCACATACGGACGTATATAGACATATT 58.381 37.037 15.98 0.00 39.07 1.28
2216 4715 7.772292 ACCACATACGGACGTATATAGACATAT 59.228 37.037 15.98 0.00 39.07 1.78
2217 4716 7.105588 ACCACATACGGACGTATATAGACATA 58.894 38.462 15.98 0.00 39.07 2.29
2218 4717 5.942236 ACCACATACGGACGTATATAGACAT 59.058 40.000 15.98 0.00 39.07 3.06
2219 4718 5.308014 ACCACATACGGACGTATATAGACA 58.692 41.667 15.98 0.00 39.07 3.41
2220 4719 5.869753 ACCACATACGGACGTATATAGAC 57.130 43.478 15.98 0.00 39.07 2.59
2221 4720 6.701340 ACTACCACATACGGACGTATATAGA 58.299 40.000 15.98 2.38 39.07 1.98
2222 4721 6.036517 GGACTACCACATACGGACGTATATAG 59.963 46.154 15.98 15.67 36.56 1.31
2223 4722 5.874810 GGACTACCACATACGGACGTATATA 59.125 44.000 15.98 6.97 36.56 0.86
2224 4723 4.697352 GGACTACCACATACGGACGTATAT 59.303 45.833 15.98 3.42 36.56 0.86
2225 4724 4.065088 GGACTACCACATACGGACGTATA 58.935 47.826 15.98 1.28 36.56 1.47
2226 4725 2.880890 GGACTACCACATACGGACGTAT 59.119 50.000 11.25 11.25 37.68 3.06
2227 4726 2.288666 GGACTACCACATACGGACGTA 58.711 52.381 7.05 7.05 35.97 3.57
2228 4727 1.098050 GGACTACCACATACGGACGT 58.902 55.000 1.98 1.98 35.97 4.34
2229 4728 1.097232 TGGACTACCACATACGGACG 58.903 55.000 0.00 0.00 41.77 4.79
2243 4742 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
2244 4743 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2263 4762 9.807921 TCCCTCTGTTTCTAAATATTTGTCTTT 57.192 29.630 11.05 0.00 0.00 2.52
2264 4763 9.454859 CTCCCTCTGTTTCTAAATATTTGTCTT 57.545 33.333 11.05 0.00 0.00 3.01
2265 4764 8.606830 ACTCCCTCTGTTTCTAAATATTTGTCT 58.393 33.333 11.05 0.00 0.00 3.41
2266 4765 8.794335 ACTCCCTCTGTTTCTAAATATTTGTC 57.206 34.615 11.05 0.00 0.00 3.18
2267 4766 9.892130 CTACTCCCTCTGTTTCTAAATATTTGT 57.108 33.333 11.05 0.00 0.00 2.83
2271 4770 8.798402 CGATCTACTCCCTCTGTTTCTAAATAT 58.202 37.037 0.00 0.00 0.00 1.28
2272 4771 7.255520 GCGATCTACTCCCTCTGTTTCTAAATA 60.256 40.741 0.00 0.00 0.00 1.40
2273 4772 6.461788 GCGATCTACTCCCTCTGTTTCTAAAT 60.462 42.308 0.00 0.00 0.00 1.40
2274 4773 5.163540 GCGATCTACTCCCTCTGTTTCTAAA 60.164 44.000 0.00 0.00 0.00 1.85
2275 4774 4.338682 GCGATCTACTCCCTCTGTTTCTAA 59.661 45.833 0.00 0.00 0.00 2.10
2276 4775 3.884091 GCGATCTACTCCCTCTGTTTCTA 59.116 47.826 0.00 0.00 0.00 2.10
2277 4776 2.691011 GCGATCTACTCCCTCTGTTTCT 59.309 50.000 0.00 0.00 0.00 2.52
2278 4777 2.691011 AGCGATCTACTCCCTCTGTTTC 59.309 50.000 0.00 0.00 0.00 2.78
2279 4778 2.741145 AGCGATCTACTCCCTCTGTTT 58.259 47.619 0.00 0.00 0.00 2.83
2280 4779 2.445682 AGCGATCTACTCCCTCTGTT 57.554 50.000 0.00 0.00 0.00 3.16
2281 4780 2.224670 CCTAGCGATCTACTCCCTCTGT 60.225 54.545 0.00 0.00 0.00 3.41
2282 4781 2.432444 CCTAGCGATCTACTCCCTCTG 58.568 57.143 0.00 0.00 0.00 3.35
2283 4782 1.353022 CCCTAGCGATCTACTCCCTCT 59.647 57.143 0.00 0.00 0.00 3.69
2284 4783 1.614850 CCCCTAGCGATCTACTCCCTC 60.615 61.905 0.00 0.00 0.00 4.30
2285 4784 0.406361 CCCCTAGCGATCTACTCCCT 59.594 60.000 0.00 0.00 0.00 4.20
2286 4785 0.112801 ACCCCTAGCGATCTACTCCC 59.887 60.000 0.00 0.00 0.00 4.30
2287 4786 1.998222 AACCCCTAGCGATCTACTCC 58.002 55.000 0.00 0.00 0.00 3.85
2288 4787 2.957006 TCAAACCCCTAGCGATCTACTC 59.043 50.000 0.00 0.00 0.00 2.59
2289 4788 3.028094 TCAAACCCCTAGCGATCTACT 57.972 47.619 0.00 0.00 0.00 2.57
2368 4868 9.031537 TCTAGTGACCTAACAAATGAATACTCA 57.968 33.333 0.00 0.00 35.56 3.41
2508 5010 0.400213 TGAACGAAGGTGGGCAGAAT 59.600 50.000 0.00 0.00 0.00 2.40
2510 5012 0.036388 GATGAACGAAGGTGGGCAGA 60.036 55.000 0.00 0.00 0.00 4.26
2541 5043 2.035321 GTCACTTGCCAATCGGGAAAAA 59.965 45.455 0.00 0.00 42.82 1.94
2590 5092 1.076024 AGGTGTGATGCCCATTGAGTT 59.924 47.619 0.00 0.00 0.00 3.01
2638 5140 2.565391 TGTGACACCTCGGACATGTAAT 59.435 45.455 0.00 0.00 0.00 1.89
2640 5142 1.271379 GTGTGACACCTCGGACATGTA 59.729 52.381 3.92 0.00 0.00 2.29
2642 5144 2.827604 GTGTGACACCTCGGACATG 58.172 57.895 3.92 0.00 0.00 3.21
2663 5168 4.520874 TGGTGATTGCGATTGTTTAAGGAA 59.479 37.500 0.00 0.00 0.00 3.36
2664 5169 4.075682 TGGTGATTGCGATTGTTTAAGGA 58.924 39.130 0.00 0.00 0.00 3.36
2672 5177 6.088483 GCATGTAATTATGGTGATTGCGATTG 59.912 38.462 0.00 0.00 0.00 2.67
2676 5181 4.229096 GGCATGTAATTATGGTGATTGCG 58.771 43.478 0.00 0.00 0.00 4.85
2681 5186 3.961484 TGGGGCATGTAATTATGGTGA 57.039 42.857 0.00 0.00 0.00 4.02
2711 5217 4.007659 GACGTGATTTTATGGGAAGGTGT 58.992 43.478 0.00 0.00 0.00 4.16
2712 5218 3.377172 GGACGTGATTTTATGGGAAGGTG 59.623 47.826 0.00 0.00 0.00 4.00
2713 5219 3.617284 GGACGTGATTTTATGGGAAGGT 58.383 45.455 0.00 0.00 0.00 3.50
2714 5220 2.612212 CGGACGTGATTTTATGGGAAGG 59.388 50.000 0.00 0.00 0.00 3.46
2715 5221 3.527533 TCGGACGTGATTTTATGGGAAG 58.472 45.455 0.00 0.00 0.00 3.46
2716 5222 3.613494 TCGGACGTGATTTTATGGGAA 57.387 42.857 0.00 0.00 0.00 3.97
2717 5223 3.055675 ACTTCGGACGTGATTTTATGGGA 60.056 43.478 0.00 0.00 0.00 4.37
2718 5224 3.267483 ACTTCGGACGTGATTTTATGGG 58.733 45.455 0.00 0.00 0.00 4.00
2719 5225 3.930229 TGACTTCGGACGTGATTTTATGG 59.070 43.478 0.00 0.00 0.00 2.74
2720 5226 4.201685 GGTGACTTCGGACGTGATTTTATG 60.202 45.833 0.00 0.00 0.00 1.90
2721 5227 3.930848 GGTGACTTCGGACGTGATTTTAT 59.069 43.478 0.00 0.00 0.00 1.40
2722 5228 3.006110 AGGTGACTTCGGACGTGATTTTA 59.994 43.478 0.00 0.00 37.44 1.52
2723 5229 2.140717 GGTGACTTCGGACGTGATTTT 58.859 47.619 0.00 0.00 0.00 1.82
2724 5230 1.343465 AGGTGACTTCGGACGTGATTT 59.657 47.619 0.00 0.00 37.44 2.17
2725 5231 0.966920 AGGTGACTTCGGACGTGATT 59.033 50.000 0.00 0.00 37.44 2.57
2726 5232 0.243907 CAGGTGACTTCGGACGTGAT 59.756 55.000 0.00 0.00 40.21 3.06
2727 5233 1.658114 CAGGTGACTTCGGACGTGA 59.342 57.895 0.00 0.00 40.21 4.35
2728 5234 2.022129 GCAGGTGACTTCGGACGTG 61.022 63.158 0.00 0.00 40.21 4.49
2729 5235 2.338984 GCAGGTGACTTCGGACGT 59.661 61.111 0.00 0.00 40.21 4.34
2730 5236 2.022129 GTGCAGGTGACTTCGGACG 61.022 63.158 0.00 0.00 40.21 4.79
2731 5237 1.668151 GGTGCAGGTGACTTCGGAC 60.668 63.158 0.00 0.00 40.21 4.79
2732 5238 1.691195 TTGGTGCAGGTGACTTCGGA 61.691 55.000 0.00 0.00 40.21 4.55
2733 5239 0.817634 TTTGGTGCAGGTGACTTCGG 60.818 55.000 0.00 0.00 40.21 4.30
2734 5240 1.021202 TTTTGGTGCAGGTGACTTCG 58.979 50.000 0.00 0.00 40.21 3.79
2735 5241 2.622942 TGATTTTGGTGCAGGTGACTTC 59.377 45.455 0.00 0.00 40.21 3.01
2736 5242 2.665165 TGATTTTGGTGCAGGTGACTT 58.335 42.857 0.00 0.00 40.21 3.01
2737 5243 2.363306 TGATTTTGGTGCAGGTGACT 57.637 45.000 0.00 0.00 46.44 3.41
2738 5244 3.758554 ACTATGATTTTGGTGCAGGTGAC 59.241 43.478 0.00 0.00 0.00 3.67
2739 5245 4.009675 GACTATGATTTTGGTGCAGGTGA 58.990 43.478 0.00 0.00 0.00 4.02
2740 5246 4.012374 AGACTATGATTTTGGTGCAGGTG 58.988 43.478 0.00 0.00 0.00 4.00
2741 5247 4.307032 AGACTATGATTTTGGTGCAGGT 57.693 40.909 0.00 0.00 0.00 4.00
2742 5248 5.297776 CCTAAGACTATGATTTTGGTGCAGG 59.702 44.000 0.00 0.00 0.00 4.85
2743 5249 6.037610 GTCCTAAGACTATGATTTTGGTGCAG 59.962 42.308 0.00 0.00 40.10 4.41
2744 5250 5.880332 GTCCTAAGACTATGATTTTGGTGCA 59.120 40.000 0.00 0.00 40.10 4.57
2745 5251 5.880332 TGTCCTAAGACTATGATTTTGGTGC 59.120 40.000 0.00 0.00 43.91 5.01
2746 5252 7.042456 CGATGTCCTAAGACTATGATTTTGGTG 60.042 40.741 0.00 0.00 43.91 4.17
2747 5253 6.986817 CGATGTCCTAAGACTATGATTTTGGT 59.013 38.462 0.00 0.00 43.91 3.67
2748 5254 7.210174 TCGATGTCCTAAGACTATGATTTTGG 58.790 38.462 0.00 0.00 43.91 3.28
2749 5255 8.543774 GTTCGATGTCCTAAGACTATGATTTTG 58.456 37.037 0.00 0.00 43.91 2.44
2750 5256 8.258007 TGTTCGATGTCCTAAGACTATGATTTT 58.742 33.333 0.00 0.00 43.91 1.82
2751 5257 7.707035 GTGTTCGATGTCCTAAGACTATGATTT 59.293 37.037 0.00 0.00 43.91 2.17
2752 5258 7.203910 GTGTTCGATGTCCTAAGACTATGATT 58.796 38.462 0.00 0.00 43.91 2.57
2753 5259 6.513556 CGTGTTCGATGTCCTAAGACTATGAT 60.514 42.308 0.00 0.00 40.59 2.45
2754 5260 5.220796 CGTGTTCGATGTCCTAAGACTATGA 60.221 44.000 0.00 0.00 40.59 2.15
2755 5261 4.970611 CGTGTTCGATGTCCTAAGACTATG 59.029 45.833 0.00 0.00 40.59 2.23
2756 5262 4.880120 TCGTGTTCGATGTCCTAAGACTAT 59.120 41.667 0.00 0.00 41.32 2.12
2757 5263 4.256110 TCGTGTTCGATGTCCTAAGACTA 58.744 43.478 0.00 0.00 41.32 2.59
2758 5264 3.079578 TCGTGTTCGATGTCCTAAGACT 58.920 45.455 0.00 0.00 41.32 3.24
2759 5265 3.427243 CTCGTGTTCGATGTCCTAAGAC 58.573 50.000 0.00 0.00 45.21 3.01
2760 5266 2.159421 GCTCGTGTTCGATGTCCTAAGA 60.159 50.000 0.00 0.00 45.21 2.10
2761 5267 2.186076 GCTCGTGTTCGATGTCCTAAG 58.814 52.381 0.00 0.00 45.21 2.18
2762 5268 1.542472 TGCTCGTGTTCGATGTCCTAA 59.458 47.619 0.00 0.00 45.21 2.69
2763 5269 1.135489 GTGCTCGTGTTCGATGTCCTA 60.135 52.381 0.00 0.00 45.21 2.94
2764 5270 0.388649 GTGCTCGTGTTCGATGTCCT 60.389 55.000 0.00 0.00 45.21 3.85
2765 5271 1.674611 CGTGCTCGTGTTCGATGTCC 61.675 60.000 0.00 0.00 45.21 4.02
2766 5272 1.674611 CCGTGCTCGTGTTCGATGTC 61.675 60.000 7.47 0.00 45.21 3.06
2767 5273 1.733041 CCGTGCTCGTGTTCGATGT 60.733 57.895 7.47 0.00 45.21 3.06
2768 5274 1.406219 CTCCGTGCTCGTGTTCGATG 61.406 60.000 7.47 0.00 45.21 3.84
2769 5275 1.154016 CTCCGTGCTCGTGTTCGAT 60.154 57.895 7.47 0.00 45.21 3.59
2770 5276 2.254350 CTCCGTGCTCGTGTTCGA 59.746 61.111 7.47 0.00 44.12 3.71
2771 5277 2.805353 CCTCCGTGCTCGTGTTCG 60.805 66.667 7.47 0.00 38.55 3.95
2772 5278 3.112709 GCCTCCGTGCTCGTGTTC 61.113 66.667 7.47 0.00 35.01 3.18
2773 5279 3.616721 AGCCTCCGTGCTCGTGTT 61.617 61.111 7.47 0.00 36.75 3.32
2801 5307 3.703939 CTCTCGTGTCTCCGCGTCG 62.704 68.421 4.92 0.00 44.70 5.12
2802 5308 2.098680 CTCTCGTGTCTCCGCGTC 59.901 66.667 4.92 0.00 44.70 5.19
2803 5309 1.793134 AAACTCTCGTGTCTCCGCGT 61.793 55.000 4.92 0.00 44.70 6.01
2804 5310 0.663568 AAAACTCTCGTGTCTCCGCG 60.664 55.000 0.00 0.00 45.74 6.46
2805 5311 2.342910 TAAAACTCTCGTGTCTCCGC 57.657 50.000 0.00 0.00 0.00 5.54
2806 5312 4.374707 CGTTTTAAAACTCTCGTGTCTCCG 60.375 45.833 24.57 6.87 36.77 4.63
2807 5313 4.084693 CCGTTTTAAAACTCTCGTGTCTCC 60.085 45.833 24.57 0.00 36.77 3.71
2808 5314 4.084693 CCCGTTTTAAAACTCTCGTGTCTC 60.085 45.833 24.57 0.00 36.77 3.36
2809 5315 3.805971 CCCGTTTTAAAACTCTCGTGTCT 59.194 43.478 24.57 0.00 36.77 3.41
2810 5316 3.605461 GCCCGTTTTAAAACTCTCGTGTC 60.605 47.826 24.57 5.67 36.77 3.67
2811 5317 2.288729 GCCCGTTTTAAAACTCTCGTGT 59.711 45.455 24.57 0.00 36.77 4.49
2812 5318 2.350102 GGCCCGTTTTAAAACTCTCGTG 60.350 50.000 24.57 10.84 36.77 4.35
2813 5319 1.875514 GGCCCGTTTTAAAACTCTCGT 59.124 47.619 24.57 0.00 36.77 4.18
2814 5320 1.874872 TGGCCCGTTTTAAAACTCTCG 59.125 47.619 24.57 13.79 36.77 4.04
2815 5321 3.994204 TTGGCCCGTTTTAAAACTCTC 57.006 42.857 24.57 14.29 36.77 3.20
2816 5322 4.403113 TCTTTTGGCCCGTTTTAAAACTCT 59.597 37.500 24.57 0.00 36.77 3.24
2817 5323 4.684877 TCTTTTGGCCCGTTTTAAAACTC 58.315 39.130 24.57 14.86 36.77 3.01
2818 5324 4.739587 TCTTTTGGCCCGTTTTAAAACT 57.260 36.364 24.57 0.00 36.77 2.66
2819 5325 4.260456 GCTTCTTTTGGCCCGTTTTAAAAC 60.260 41.667 19.15 19.15 35.59 2.43
2820 5326 3.872182 GCTTCTTTTGGCCCGTTTTAAAA 59.128 39.130 0.00 0.00 0.00 1.52
2821 5327 3.118738 TGCTTCTTTTGGCCCGTTTTAAA 60.119 39.130 0.00 0.00 0.00 1.52
2822 5328 2.431057 TGCTTCTTTTGGCCCGTTTTAA 59.569 40.909 0.00 0.00 0.00 1.52
2823 5329 2.032620 TGCTTCTTTTGGCCCGTTTTA 58.967 42.857 0.00 0.00 0.00 1.52
2824 5330 0.827368 TGCTTCTTTTGGCCCGTTTT 59.173 45.000 0.00 0.00 0.00 2.43
2825 5331 0.104120 GTGCTTCTTTTGGCCCGTTT 59.896 50.000 0.00 0.00 0.00 3.60
2826 5332 1.739667 GTGCTTCTTTTGGCCCGTT 59.260 52.632 0.00 0.00 0.00 4.44
2827 5333 2.551912 CGTGCTTCTTTTGGCCCGT 61.552 57.895 0.00 0.00 0.00 5.28
2828 5334 2.255252 CGTGCTTCTTTTGGCCCG 59.745 61.111 0.00 0.00 0.00 6.13
2829 5335 2.049156 GCGTGCTTCTTTTGGCCC 60.049 61.111 0.00 0.00 0.00 5.80
2830 5336 1.372128 CTGCGTGCTTCTTTTGGCC 60.372 57.895 0.00 0.00 0.00 5.36
2831 5337 2.018324 GCTGCGTGCTTCTTTTGGC 61.018 57.895 0.00 0.00 38.95 4.52
2832 5338 1.727022 CGCTGCGTGCTTCTTTTGG 60.727 57.895 14.93 0.00 40.11 3.28
2833 5339 0.110056 ATCGCTGCGTGCTTCTTTTG 60.110 50.000 22.48 0.00 40.11 2.44
2834 5340 0.110056 CATCGCTGCGTGCTTCTTTT 60.110 50.000 22.48 0.00 40.11 2.27
2835 5341 1.499056 CATCGCTGCGTGCTTCTTT 59.501 52.632 22.48 0.00 40.11 2.52
2836 5342 3.031964 GCATCGCTGCGTGCTTCTT 62.032 57.895 28.88 6.56 38.92 2.52
2837 5343 3.494336 GCATCGCTGCGTGCTTCT 61.494 61.111 28.88 7.83 38.92 2.85
2846 5352 1.534595 GGCCTTGTATTTGCATCGCTG 60.535 52.381 0.00 0.00 0.00 5.18
2847 5353 0.740737 GGCCTTGTATTTGCATCGCT 59.259 50.000 0.00 0.00 0.00 4.93
2848 5354 0.249031 GGGCCTTGTATTTGCATCGC 60.249 55.000 0.84 0.00 0.00 4.58
2849 5355 0.029300 CGGGCCTTGTATTTGCATCG 59.971 55.000 0.84 0.00 0.00 3.84
2850 5356 1.388547 TCGGGCCTTGTATTTGCATC 58.611 50.000 0.84 0.00 0.00 3.91
2851 5357 1.750778 CTTCGGGCCTTGTATTTGCAT 59.249 47.619 0.84 0.00 0.00 3.96
2852 5358 1.173043 CTTCGGGCCTTGTATTTGCA 58.827 50.000 0.84 0.00 0.00 4.08
2853 5359 0.179137 GCTTCGGGCCTTGTATTTGC 60.179 55.000 0.84 0.00 34.27 3.68
2864 5370 1.596477 CTATGCTCTGGCTTCGGGC 60.596 63.158 0.00 0.00 39.59 6.13
2865 5371 0.033228 CTCTATGCTCTGGCTTCGGG 59.967 60.000 0.00 0.00 39.59 5.14
2866 5372 0.599728 GCTCTATGCTCTGGCTTCGG 60.600 60.000 0.00 0.00 39.59 4.30
2867 5373 0.103755 TGCTCTATGCTCTGGCTTCG 59.896 55.000 0.00 0.00 43.37 3.79
2868 5374 1.580815 GTGCTCTATGCTCTGGCTTC 58.419 55.000 0.00 0.00 43.37 3.86
2869 5375 0.179089 CGTGCTCTATGCTCTGGCTT 60.179 55.000 0.00 0.00 43.37 4.35
2870 5376 1.440893 CGTGCTCTATGCTCTGGCT 59.559 57.895 0.00 0.00 43.37 4.75
2871 5377 2.243264 GCGTGCTCTATGCTCTGGC 61.243 63.158 0.00 0.00 43.37 4.85
2872 5378 0.875040 CTGCGTGCTCTATGCTCTGG 60.875 60.000 0.00 0.00 41.99 3.86
2873 5379 0.875040 CCTGCGTGCTCTATGCTCTG 60.875 60.000 0.00 0.00 41.99 3.35
2874 5380 1.440893 CCTGCGTGCTCTATGCTCT 59.559 57.895 0.00 0.00 41.99 4.09
2875 5381 2.243264 GCCTGCGTGCTCTATGCTC 61.243 63.158 0.00 0.00 41.99 4.26
2876 5382 2.202987 GCCTGCGTGCTCTATGCT 60.203 61.111 0.00 0.00 41.99 3.79
2877 5383 2.202987 AGCCTGCGTGCTCTATGC 60.203 61.111 0.00 0.00 36.75 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.