Multiple sequence alignment - TraesCS4D01G188100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G188100 chr4D 100.000 4932 0 0 1 4932 327427610 327432541 0.000000e+00 9108.0
1 TraesCS4D01G188100 chr4A 95.365 3538 140 13 1 3525 143447393 143443867 0.000000e+00 5603.0
2 TraesCS4D01G188100 chr4A 95.722 1426 45 7 3510 4932 143442862 143441450 0.000000e+00 2281.0
3 TraesCS4D01G188100 chr4A 86.842 190 25 0 32 221 671938020 671938209 3.870000e-51 213.0
4 TraesCS4D01G188100 chr4B 95.376 1795 64 10 1605 3395 406808963 406810742 0.000000e+00 2837.0
5 TraesCS4D01G188100 chr4B 91.088 1470 72 25 3443 4898 406810741 406812165 0.000000e+00 1934.0
6 TraesCS4D01G188100 chr4B 97.595 873 20 1 736 1608 406803415 406804286 0.000000e+00 1495.0
7 TraesCS4D01G188100 chr4B 93.252 163 10 1 32 193 625959915 625960077 6.380000e-59 239.0
8 TraesCS4D01G188100 chr4B 91.837 147 11 1 290 436 406802561 406802706 2.330000e-48 204.0
9 TraesCS4D01G188100 chr4B 87.135 171 9 2 391 561 406802710 406802867 1.090000e-41 182.0
10 TraesCS4D01G188100 chr2A 80.625 480 68 17 1027 1487 47833575 47833102 1.020000e-91 348.0
11 TraesCS4D01G188100 chr2A 88.417 259 23 4 32 289 61817183 61816931 6.200000e-79 305.0
12 TraesCS4D01G188100 chr2A 85.401 137 20 0 154 290 728596769 728596905 5.150000e-30 143.0
13 TraesCS4D01G188100 chr1D 87.375 301 24 8 1 293 2462749 2463043 2.850000e-87 333.0
14 TraesCS4D01G188100 chr6A 86.207 290 32 7 1 289 520709402 520709120 1.720000e-79 307.0
15 TraesCS4D01G188100 chr5B 88.372 258 24 6 33 289 433869066 433869318 6.200000e-79 305.0
16 TraesCS4D01G188100 chr5B 89.560 182 18 1 5 186 440198474 440198654 3.840000e-56 230.0
17 TraesCS4D01G188100 chr1B 95.683 139 4 1 4794 4932 136011436 136011572 6.430000e-54 222.0
18 TraesCS4D01G188100 chr5D 91.275 149 13 0 141 289 28638641 28638493 2.330000e-48 204.0
19 TraesCS4D01G188100 chr2B 87.861 173 18 2 32 204 221733846 221734015 3.010000e-47 200.0
20 TraesCS4D01G188100 chr3A 82.946 129 17 2 156 284 100344308 100344185 1.450000e-20 111.0
21 TraesCS4D01G188100 chr3A 100.000 31 0 0 770 800 178239258 178239228 1.920000e-04 58.4
22 TraesCS4D01G188100 chr1A 74.747 297 52 11 1 275 384069416 384069711 1.450000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G188100 chr4D 327427610 327432541 4931 False 9108.0 9108 100.0000 1 4932 1 chr4D.!!$F1 4931
1 TraesCS4D01G188100 chr4A 143441450 143447393 5943 True 3942.0 5603 95.5435 1 4932 2 chr4A.!!$R1 4931
2 TraesCS4D01G188100 chr4B 406808963 406812165 3202 False 2385.5 2837 93.2320 1605 4898 2 chr4B.!!$F3 3293
3 TraesCS4D01G188100 chr4B 406802561 406804286 1725 False 627.0 1495 92.1890 290 1608 3 chr4B.!!$F2 1318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 554 0.095935 CGACAAGCAGGAGCAAATCG 59.904 55.000 0.00 0.00 45.49 3.34 F
1235 1658 0.025513 GCACTGTCTTATTCGCAGCG 59.974 55.000 9.06 9.06 33.87 5.18 F
2077 2501 0.401738 TGGGCTTGCCATAGCTATCC 59.598 55.000 14.04 0.58 40.99 2.59 F
2079 2503 1.202927 GGGCTTGCCATAGCTATCCAA 60.203 52.381 14.04 9.36 40.99 3.53 F
3058 3488 1.398692 TTCTGTTCTTTGTGGTGGCC 58.601 50.000 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2357 0.036164 TGAACTCCCCAACATCGGTG 59.964 55.000 0.0 0.0 0.00 4.94 R
2808 3233 0.521735 GATTGAACAACTGACGCCCC 59.478 55.000 0.0 0.0 0.00 5.80 R
3058 3488 2.229784 GCCACCAAGAGAAATGGACAAG 59.770 50.000 0.0 0.0 40.56 3.16 R
3431 3863 2.827921 ACCATTCTTGCAAACCTGATCC 59.172 45.455 0.0 0.0 0.00 3.36 R
4632 6094 1.207089 CCTTGCAGTGGGAACGAGATA 59.793 52.381 0.0 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.234550 ACATCTCTATATGGCCCAACAGA 58.765 43.478 0.00 0.00 0.00 3.41
113 114 4.082190 TGTCAAATAGCAGACGAACTAGCT 60.082 41.667 0.00 0.00 37.58 3.32
209 210 4.944372 CGACACGGCCCGGCTATC 62.944 72.222 8.57 0.00 0.00 2.08
222 223 1.939785 GCTATCAGTCGTGCCGTCG 60.940 63.158 0.00 0.00 0.00 5.12
350 351 9.654663 AGAAAACAGAAGAAGTATATTTAGCGT 57.345 29.630 0.00 0.00 0.00 5.07
436 486 3.719268 ACATGACATCCAGTTTAGCCA 57.281 42.857 0.00 0.00 0.00 4.75
457 507 1.808945 GCAACATGGTTCCACAGAGAG 59.191 52.381 0.00 0.00 0.00 3.20
504 554 0.095935 CGACAAGCAGGAGCAAATCG 59.904 55.000 0.00 0.00 45.49 3.34
508 558 1.664659 CAAGCAGGAGCAAATCGAGAG 59.335 52.381 0.00 0.00 45.49 3.20
511 561 1.134848 GCAGGAGCAAATCGAGAGAGT 60.135 52.381 0.00 0.00 42.29 3.24
565 615 5.305644 CACCATTGACCTCCTATAGCTAAGT 59.694 44.000 0.00 0.00 0.00 2.24
584 634 6.919115 GCTAAGTTAATCAGCACTAGTCCTAC 59.081 42.308 0.00 0.00 35.35 3.18
625 675 5.432060 AGCCACCCCACTACTCTTTATTTAT 59.568 40.000 0.00 0.00 0.00 1.40
727 780 9.429359 CACTATGTCTCCAAATCATAATACTCC 57.571 37.037 0.00 0.00 0.00 3.85
883 1306 1.136774 CGCGTCGTCTCAGATCCAA 59.863 57.895 0.00 0.00 0.00 3.53
1209 1632 2.474712 GCCTTTTCCGTCTTCGCG 59.525 61.111 0.00 0.00 35.54 5.87
1235 1658 0.025513 GCACTGTCTTATTCGCAGCG 59.974 55.000 9.06 9.06 33.87 5.18
1334 1757 2.677003 CGGTCACAATGGCGTGTCC 61.677 63.158 0.00 0.00 40.42 4.02
1496 1919 3.161067 CAAGGGTGAGACTCAGAGAGAA 58.839 50.000 5.10 0.00 33.32 2.87
1524 1947 1.544246 GCAATGCCGTTATATTCCCCC 59.456 52.381 0.00 0.00 0.00 5.40
1614 2037 1.480545 ACGTTGGTCATCATCGATGGA 59.519 47.619 24.61 12.50 40.15 3.41
1731 2154 2.032620 GAGAATGTAGAGGAGCGGGAA 58.967 52.381 0.00 0.00 0.00 3.97
1933 2357 3.118992 GCCTTTCAAGATCAATTGGGGAC 60.119 47.826 5.42 0.00 0.00 4.46
2056 2480 6.868864 AGTGTATCTTGACTAACATGTGTGTC 59.131 38.462 18.87 18.87 37.67 3.67
2062 2486 2.484264 GACTAACATGTGTGTCTTGGGC 59.516 50.000 18.58 0.00 37.67 5.36
2074 2498 1.134098 GTCTTGGGCTTGCCATAGCTA 60.134 52.381 14.04 0.00 40.99 3.32
2077 2501 0.401738 TGGGCTTGCCATAGCTATCC 59.598 55.000 14.04 0.58 40.99 2.59
2079 2503 1.202927 GGGCTTGCCATAGCTATCCAA 60.203 52.381 14.04 9.36 40.99 3.53
2179 2603 1.907807 TTTGCCTGCGGAATTGGCT 60.908 52.632 7.19 0.00 46.23 4.75
2205 2629 6.679392 GCAAAGCTTGTTGTTAAGGTCAGTAA 60.679 38.462 0.00 0.00 37.41 2.24
2215 2639 5.472137 TGTTAAGGTCAGTAAGCATTTCACC 59.528 40.000 0.00 0.00 0.00 4.02
2241 2665 6.806739 GCAGTTGTTAAATTGTCCCATACTTC 59.193 38.462 0.00 0.00 0.00 3.01
2242 2666 7.021196 CAGTTGTTAAATTGTCCCATACTTCG 58.979 38.462 0.00 0.00 0.00 3.79
2383 2808 2.551887 TGATCATTGTTCAACACCACCG 59.448 45.455 0.00 0.00 0.00 4.94
2409 2834 3.748048 TCGTCTCCAAAGCAAAATCAGAG 59.252 43.478 0.00 0.00 0.00 3.35
2529 2954 5.824904 TTATTTGAAGAAGGCTCTGCATC 57.175 39.130 0.00 0.00 37.07 3.91
2644 3069 9.518906 TGTGCATTTATTTGTCATATGTGAATC 57.481 29.630 1.90 0.00 35.80 2.52
2906 3336 6.529084 TCCCCATGAATTGGTCTTATGTAT 57.471 37.500 0.00 0.00 44.83 2.29
3058 3488 1.398692 TTCTGTTCTTTGTGGTGGCC 58.601 50.000 0.00 0.00 0.00 5.36
3146 3578 8.567285 AATTAGAATGTAGACCAAGGTCAAAG 57.433 34.615 20.52 0.00 46.76 2.77
3268 3700 2.945668 AGTTGTTGTGCTTCTTCCAGTC 59.054 45.455 0.00 0.00 0.00 3.51
3271 3703 2.288666 GTTGTGCTTCTTCCAGTCACA 58.711 47.619 0.00 0.00 36.07 3.58
3356 3788 6.443206 ACTTCTGTAGACTAGTAGGTGGTCTA 59.557 42.308 0.00 0.00 44.81 2.59
3397 3829 1.450312 GATGCCACTACAGCGCCTT 60.450 57.895 2.29 0.00 0.00 4.35
3406 3838 2.626743 ACTACAGCGCCTTAATACGGAT 59.373 45.455 2.29 0.00 0.00 4.18
3412 3844 2.230750 GCGCCTTAATACGGATCCTACT 59.769 50.000 10.75 0.00 0.00 2.57
3431 3863 7.831753 TCCTACTTTTCTCATTGTCAGTAGAG 58.168 38.462 5.85 0.00 37.12 2.43
3517 3949 4.693283 TCACTTTGGCTCTTCCATATACG 58.307 43.478 0.00 0.00 46.04 3.06
3760 5212 2.676121 CCCCCATTTCGCTGTGCA 60.676 61.111 0.00 0.00 0.00 4.57
4006 5458 7.417612 GTTCAGTTTTTCTGCTCTATGTGAAA 58.582 34.615 0.00 0.00 43.32 2.69
4096 5548 1.339610 TGAACTGAACAAATTGGGCCG 59.660 47.619 0.00 0.00 0.00 6.13
4125 5577 2.349886 GCTTGTTGTCTATCAAGAGCGG 59.650 50.000 8.74 0.00 42.22 5.52
4156 5608 8.585471 AAATTTCCATTTGCTCTGAGAAGATA 57.415 30.769 9.28 0.00 30.89 1.98
4163 5615 2.091389 TGCTCTGAGAAGATAGCTCCCT 60.091 50.000 9.28 0.00 35.95 4.20
4213 5665 7.228590 TGTACCTTAGCCTGTAAAGTGAAATT 58.771 34.615 0.00 0.00 0.00 1.82
4249 5701 0.179032 TTCAGGAAGCAACGGCAAGA 60.179 50.000 0.00 0.00 44.61 3.02
4256 5708 2.035442 GCAACGGCAAGACTCCTCC 61.035 63.158 0.00 0.00 40.72 4.30
4355 5811 4.512484 CATTCTGGGTTGGTTTTTGTTGT 58.488 39.130 0.00 0.00 0.00 3.32
4419 5875 2.664851 CGGCGCAACTTGTCTGGA 60.665 61.111 10.83 0.00 0.00 3.86
4449 5905 7.108847 AGATAAAACTCTTGACTGGAGATTGG 58.891 38.462 0.00 0.00 35.10 3.16
4470 5926 4.402155 TGGTTGATCTCATAACCCAAATGC 59.598 41.667 9.53 0.00 44.48 3.56
4578 6037 8.635765 TGTTTAAAATAGAGAAGGCAAGTCAT 57.364 30.769 0.00 0.00 0.00 3.06
4595 6054 6.362016 GCAAGTCATAGAGATGATACTGTTCG 59.638 42.308 0.00 0.00 43.95 3.95
4601 6060 9.396022 TCATAGAGATGATACTGTTCGCATATA 57.604 33.333 0.00 0.00 37.15 0.86
4605 6064 9.178758 AGAGATGATACTGTTCGCATATATGTA 57.821 33.333 14.14 0.56 0.00 2.29
4632 6094 6.726764 ACTAATAACTTCCCTTGAGTCAGAGT 59.273 38.462 0.00 0.00 0.00 3.24
4676 6138 7.291182 AGGTGAGGATAACAGAAAGCATACTAT 59.709 37.037 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.914531 AAAACGTAATCGGGCCGTGC 61.915 55.000 27.32 10.37 41.85 5.34
37 38 7.343057 TCTGTTGGGCCATATAGAGATGTATAG 59.657 40.741 7.26 0.00 0.00 1.31
47 48 8.960591 CCTATTTTTATCTGTTGGGCCATATAG 58.039 37.037 7.26 6.45 0.00 1.31
54 55 6.709018 TTAGCCTATTTTTATCTGTTGGGC 57.291 37.500 0.00 0.00 37.57 5.36
81 82 3.324846 TCTGCTATTTGACACACTGGACT 59.675 43.478 0.00 0.00 0.00 3.85
83 84 3.664107 GTCTGCTATTTGACACACTGGA 58.336 45.455 0.00 0.00 33.75 3.86
90 91 4.082190 AGCTAGTTCGTCTGCTATTTGACA 60.082 41.667 0.00 0.00 32.08 3.58
113 114 4.393155 CACTAGCACGCCAGGCCA 62.393 66.667 5.01 0.00 0.00 5.36
136 137 1.041437 GGCCCAGCTACTAATCGAGT 58.959 55.000 0.00 0.00 42.69 4.18
282 283 8.455899 ACATATTTTGTTGTTCAGGCCATACCT 61.456 37.037 5.01 0.00 43.38 3.08
350 351 4.844998 TTGTTGCAAATCTTCCGATTCA 57.155 36.364 0.00 0.00 38.89 2.57
436 486 1.421268 TCTCTGTGGAACCATGTTGCT 59.579 47.619 0.00 0.00 34.36 3.91
457 507 3.364023 CCGTCGAGTGTGTATGTCTTTTC 59.636 47.826 0.00 0.00 0.00 2.29
504 554 9.862371 TTAGATTAAGAAACATGTGACTCTCTC 57.138 33.333 0.00 1.54 0.00 3.20
508 558 8.940952 AGCTTTAGATTAAGAAACATGTGACTC 58.059 33.333 0.00 0.00 0.00 3.36
511 561 8.621532 ACAGCTTTAGATTAAGAAACATGTGA 57.378 30.769 0.00 0.00 0.00 3.58
539 589 2.551071 GCTATAGGAGGTCAATGGTGGC 60.551 54.545 1.04 0.00 0.00 5.01
565 615 5.008415 GCTACGTAGGACTAGTGCTGATTAA 59.992 44.000 25.58 3.35 32.14 1.40
625 675 8.319143 AGAGTACTCGCAAGCTTTTAATAAAA 57.681 30.769 17.07 0.00 34.09 1.52
631 681 4.878439 TGAAGAGTACTCGCAAGCTTTTA 58.122 39.130 17.07 0.00 34.09 1.52
707 760 6.931840 GGAGTGGAGTATTATGATTTGGAGAC 59.068 42.308 0.00 0.00 0.00 3.36
712 765 7.158021 GGAGAGGAGTGGAGTATTATGATTTG 58.842 42.308 0.00 0.00 0.00 2.32
727 780 1.001406 GTGACAAGGTGGAGAGGAGTG 59.999 57.143 0.00 0.00 0.00 3.51
1209 1632 1.587034 GAATAAGACAGTGCGCGTACC 59.413 52.381 23.95 8.84 0.00 3.34
1496 1919 0.037590 TAACGGCATTGCAAGGACCT 59.962 50.000 16.56 3.13 0.00 3.85
1546 1969 3.191371 GCACCAATTCCCAGAGTTAACAG 59.809 47.826 8.61 0.00 0.00 3.16
1614 2037 1.667830 CGCCACAGTCACGGTGAAT 60.668 57.895 13.23 9.14 38.54 2.57
1731 2154 4.640855 CCACTCGCCGTGACACGT 62.641 66.667 25.18 4.71 46.81 4.49
1933 2357 0.036164 TGAACTCCCCAACATCGGTG 59.964 55.000 0.00 0.00 0.00 4.94
2062 2486 3.190744 CAGCATTGGATAGCTATGGCAAG 59.809 47.826 11.94 0.00 39.50 4.01
2077 2501 0.548031 TTAGCCTCCCTCCAGCATTG 59.452 55.000 0.00 0.00 0.00 2.82
2079 2503 2.422939 TATTAGCCTCCCTCCAGCAT 57.577 50.000 0.00 0.00 0.00 3.79
2089 2513 5.942236 TCCATCTGATGCAATTATTAGCCTC 59.058 40.000 12.17 0.00 0.00 4.70
2179 2603 3.445450 TGACCTTAACAACAAGCTTTGCA 59.555 39.130 0.00 0.00 0.00 4.08
2205 2629 1.032014 AACAACTGCGGTGAAATGCT 58.968 45.000 0.00 0.00 0.00 3.79
2215 2639 3.634568 TGGGACAATTTAACAACTGCG 57.365 42.857 0.00 0.00 31.92 5.18
2241 2665 4.571984 TCAAGACAATCAAGCATACCATCG 59.428 41.667 0.00 0.00 0.00 3.84
2242 2666 5.220931 GGTCAAGACAATCAAGCATACCATC 60.221 44.000 2.29 0.00 0.00 3.51
2383 2808 1.503818 TTTGCTTTGGAGACGACGGC 61.504 55.000 0.00 0.00 0.00 5.68
2409 2834 5.277047 CAAAAAGAAGAGACCTCAACTTGC 58.723 41.667 0.00 0.00 31.57 4.01
2529 2954 2.554032 AGAACATGCCTTTCTTCCAACG 59.446 45.455 0.00 0.00 28.36 4.10
2618 3043 9.518906 GATTCACATATGACAAATAAATGCACA 57.481 29.630 10.38 0.00 33.38 4.57
2808 3233 0.521735 GATTGAACAACTGACGCCCC 59.478 55.000 0.00 0.00 0.00 5.80
3058 3488 2.229784 GCCACCAAGAGAAATGGACAAG 59.770 50.000 0.00 0.00 40.56 3.16
3146 3578 5.616488 TTTTTCGTGTATTACTTGGCTCC 57.384 39.130 0.00 0.00 0.00 4.70
3233 3665 6.432162 AGCACAACAACTCATCAAATGACTAT 59.568 34.615 0.00 0.00 35.06 2.12
3244 3676 3.554934 TGGAAGAAGCACAACAACTCAT 58.445 40.909 0.00 0.00 0.00 2.90
3318 3750 6.887545 AGTCTACAGAAGTACTACTGCAAGAT 59.112 38.462 0.00 0.00 37.61 2.40
3397 3829 8.701895 ACAATGAGAAAAGTAGGATCCGTATTA 58.298 33.333 5.98 0.00 0.00 0.98
3406 3838 7.093727 CCTCTACTGACAATGAGAAAAGTAGGA 60.094 40.741 7.57 0.00 38.30 2.94
3412 3844 7.244886 TGATCCTCTACTGACAATGAGAAAA 57.755 36.000 0.00 0.00 0.00 2.29
3431 3863 2.827921 ACCATTCTTGCAAACCTGATCC 59.172 45.455 0.00 0.00 0.00 3.36
3712 5164 4.662278 CTTTTGACAGGGAATTCCTACCA 58.338 43.478 23.63 13.41 46.12 3.25
3760 5212 3.480470 CACTTGGTCCACTTGACAGATT 58.520 45.455 0.00 0.00 46.38 2.40
4006 5458 7.442666 GTGACAAACAGTTTATTCTCTCCTCTT 59.557 37.037 0.00 0.00 0.00 2.85
4125 5577 6.392354 TCAGAGCAAATGGAAATTTCATCAC 58.608 36.000 19.49 3.11 0.00 3.06
4156 5608 1.353694 AGTGCTGAATTTCAGGGAGCT 59.646 47.619 24.09 0.00 44.43 4.09
4163 5615 6.772716 AGAGAAAAACCTAGTGCTGAATTTCA 59.227 34.615 0.00 0.00 0.00 2.69
4213 5665 8.512138 GCTTCCTGAAACATTTTTAAGCTAGTA 58.488 33.333 0.00 0.00 36.16 1.82
4249 5701 3.297134 TTCAAAACAGCAAGGAGGAGT 57.703 42.857 0.00 0.00 0.00 3.85
4256 5708 6.042143 ACAAGGTACATTTCAAAACAGCAAG 58.958 36.000 0.00 0.00 0.00 4.01
4263 5715 7.522399 CGGTTCCATACAAGGTACATTTCAAAA 60.522 37.037 0.00 0.00 31.24 2.44
4355 5811 8.840833 TTAGTAGTGAAATTACATGACAAGCA 57.159 30.769 0.00 0.00 30.47 3.91
4419 5875 7.455008 TCTCCAGTCAAGAGTTTTATCTTACCT 59.545 37.037 0.00 0.00 37.43 3.08
4449 5905 5.126061 ACAGCATTTGGGTTATGAGATCAAC 59.874 40.000 0.00 0.00 0.00 3.18
4470 5926 2.552315 ACAGCGGGAAACAATTGTACAG 59.448 45.455 12.39 7.47 0.00 2.74
4578 6037 9.178758 ACATATATGCGAACAGTATCATCTCTA 57.821 33.333 12.79 0.00 0.00 2.43
4602 6061 9.483489 TGACTCAAGGGAAGTTATTAGTATACA 57.517 33.333 5.50 0.00 0.00 2.29
4603 6062 9.968870 CTGACTCAAGGGAAGTTATTAGTATAC 57.031 37.037 0.00 0.00 0.00 1.47
4605 6064 8.840200 TCTGACTCAAGGGAAGTTATTAGTAT 57.160 34.615 0.00 0.00 0.00 2.12
4608 6067 7.176589 ACTCTGACTCAAGGGAAGTTATTAG 57.823 40.000 0.00 0.00 0.00 1.73
4609 6068 8.840200 ATACTCTGACTCAAGGGAAGTTATTA 57.160 34.615 0.00 0.00 0.00 0.98
4610 6069 7.621683 AGATACTCTGACTCAAGGGAAGTTATT 59.378 37.037 0.00 0.00 0.00 1.40
4611 6070 7.129425 AGATACTCTGACTCAAGGGAAGTTAT 58.871 38.462 0.00 0.00 0.00 1.89
4632 6094 1.207089 CCTTGCAGTGGGAACGAGATA 59.793 52.381 0.00 0.00 0.00 1.98
4676 6138 8.491045 TGTCCTCTACCATATGTCAATATTCA 57.509 34.615 1.24 0.00 0.00 2.57
4696 6158 3.425162 AAAGGAAGAAAGCGATGTCCT 57.575 42.857 0.00 0.00 40.51 3.85
4697 6159 4.229876 CAAAAAGGAAGAAAGCGATGTCC 58.770 43.478 0.00 0.00 0.00 4.02
4698 6160 4.860072 ACAAAAAGGAAGAAAGCGATGTC 58.140 39.130 0.00 0.00 0.00 3.06
4699 6161 4.918810 ACAAAAAGGAAGAAAGCGATGT 57.081 36.364 0.00 0.00 0.00 3.06
4700 6162 5.280945 TCAACAAAAAGGAAGAAAGCGATG 58.719 37.500 0.00 0.00 0.00 3.84
4848 6311 5.891551 AGCTGAAGGAACTAGGTTTGAAAAA 59.108 36.000 0.00 0.00 38.49 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.