Multiple sequence alignment - TraesCS4D01G188000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G188000 chr4D 100.000 9103 0 0 1 9103 327376307 327385409 0.000000e+00 16811.0
1 TraesCS4D01G188000 chr4D 91.803 61 5 0 6 66 226456841 226456781 1.630000e-12 86.1
2 TraesCS4D01G188000 chr4A 95.744 6744 174 55 505 7185 143704222 143697529 0.000000e+00 10759.0
3 TraesCS4D01G188000 chr4A 96.821 1793 49 7 7314 9103 143697362 143695575 0.000000e+00 2988.0
4 TraesCS4D01G188000 chr4A 90.204 245 23 1 1 245 143704647 143704404 1.470000e-82 318.0
5 TraesCS4D01G188000 chr4A 94.595 74 4 0 243 316 143704284 143704211 2.080000e-21 115.0
6 TraesCS4D01G188000 chr4A 80.000 110 10 4 7161 7260 716999353 716999246 4.560000e-08 71.3
7 TraesCS4D01G188000 chr4B 95.180 6266 172 48 778 6962 406675312 406681528 0.000000e+00 9779.0
8 TraesCS4D01G188000 chr4B 90.977 1463 101 17 7624 9079 406682399 406683837 0.000000e+00 1941.0
9 TraesCS4D01G188000 chr4B 92.114 317 25 0 1 317 406674419 406674735 1.800000e-121 448.0
10 TraesCS4D01G188000 chr4B 85.238 420 49 9 3200 3610 15923655 15923240 3.930000e-113 420.0
11 TraesCS4D01G188000 chr4B 90.141 284 11 6 506 780 406674724 406674999 4.040000e-93 353.0
12 TraesCS4D01G188000 chr4B 87.365 277 19 7 7356 7632 406681819 406682079 4.130000e-78 303.0
13 TraesCS4D01G188000 chr4B 92.727 110 5 2 7291 7400 406681717 406681823 1.220000e-33 156.0
14 TraesCS4D01G188000 chr4B 90.566 106 9 1 6974 7079 406681615 406681719 1.230000e-28 139.0
15 TraesCS4D01G188000 chr5A 85.437 515 69 4 8565 9077 289857167 289857677 1.740000e-146 531.0
16 TraesCS4D01G188000 chr5A 83.498 303 47 3 8563 8865 674365314 674365015 6.960000e-71 279.0
17 TraesCS4D01G188000 chr5B 84.286 490 60 11 8597 9079 232979031 232979510 6.440000e-126 462.0
18 TraesCS4D01G188000 chr5B 85.783 415 53 6 3201 3611 340615291 340615703 1.400000e-117 435.0
19 TraesCS4D01G188000 chr5B 89.840 187 13 2 317 502 59163982 59163801 1.530000e-57 235.0
20 TraesCS4D01G188000 chr5B 89.881 168 16 1 354 520 556290996 556291163 1.990000e-51 215.0
21 TraesCS4D01G188000 chr5B 95.385 65 3 0 6 70 555192653 555192589 4.500000e-18 104.0
22 TraesCS4D01G188000 chr5B 93.548 62 4 0 6 67 564973561 564973500 9.730000e-15 93.5
23 TraesCS4D01G188000 chr5B 84.043 94 5 5 7160 7244 620236061 620236153 2.110000e-11 82.4
24 TraesCS4D01G188000 chr5B 95.918 49 2 0 10 58 387953418 387953370 7.580000e-11 80.5
25 TraesCS4D01G188000 chr5B 82.667 75 11 2 7172 7244 397690438 397690364 2.120000e-06 65.8
26 TraesCS4D01G188000 chr5B 94.444 36 2 0 7212 7247 471336676 471336641 1.000000e-03 56.5
27 TraesCS4D01G188000 chrUn 86.667 420 36 13 3201 3608 327930611 327931022 1.800000e-121 448.0
28 TraesCS4D01G188000 chrUn 86.232 276 34 3 8616 8890 954494 954766 6.910000e-76 296.0
29 TraesCS4D01G188000 chrUn 94.631 149 8 0 354 502 329701369 329701517 1.980000e-56 231.0
30 TraesCS4D01G188000 chr2B 85.782 422 52 8 3195 3610 415997287 415996868 3.020000e-119 440.0
31 TraesCS4D01G188000 chr2B 81.323 514 56 22 8565 9072 693319301 693318822 1.850000e-101 381.0
32 TraesCS4D01G188000 chr2B 89.286 84 5 1 7165 7244 6027182 6027265 1.620000e-17 102.0
33 TraesCS4D01G188000 chr2B 86.885 61 6 2 293 352 75699266 75699325 5.900000e-07 67.6
34 TraesCS4D01G188000 chr3B 85.749 414 50 6 3204 3611 544546254 544545844 6.530000e-116 429.0
35 TraesCS4D01G188000 chr3B 95.302 149 7 0 354 502 39925459 39925311 4.250000e-58 237.0
36 TraesCS4D01G188000 chr3B 89.286 84 7 2 7171 7252 22055902 22055985 4.500000e-18 104.0
37 TraesCS4D01G188000 chr5D 85.194 412 49 10 3200 3603 350373564 350373971 6.580000e-111 412.0
38 TraesCS4D01G188000 chr5D 84.892 417 50 11 3201 3610 509542676 509543086 8.510000e-110 409.0
39 TraesCS4D01G188000 chr2D 82.773 476 62 11 8566 9035 233535469 233535008 3.060000e-109 407.0
40 TraesCS4D01G188000 chr3A 84.615 429 41 16 8609 9035 692699987 692700392 3.960000e-108 403.0
41 TraesCS4D01G188000 chr3A 92.157 51 4 0 7168 7218 19272019 19272069 1.270000e-08 73.1
42 TraesCS4D01G188000 chr3A 81.633 98 8 2 7157 7244 638310040 638310137 1.270000e-08 73.1
43 TraesCS4D01G188000 chr7D 84.555 382 47 7 8668 9044 459385370 459385744 1.440000e-97 368.0
44 TraesCS4D01G188000 chr7D 92.949 156 11 0 354 509 176959590 176959435 2.560000e-55 228.0
45 TraesCS4D01G188000 chr7D 93.333 60 4 0 6 65 232325215 232325274 1.260000e-13 89.8
46 TraesCS4D01G188000 chr7D 84.043 94 5 5 7161 7244 341623168 341623075 2.110000e-11 82.4
47 TraesCS4D01G188000 chr7D 82.979 94 6 5 7161 7244 341477073 341477166 9.800000e-10 76.8
48 TraesCS4D01G188000 chr1A 86.834 319 35 7 8722 9036 568569946 568569631 5.230000e-92 350.0
49 TraesCS4D01G188000 chr1A 90.323 62 6 0 10 71 134966998 134966937 2.110000e-11 82.4
50 TraesCS4D01G188000 chr1A 100.000 40 0 0 316 355 494724863 494724824 3.530000e-09 75.0
51 TraesCS4D01G188000 chr6B 85.401 274 37 2 8704 8977 678599997 678599727 1.940000e-71 281.0
52 TraesCS4D01G188000 chr6B 92.424 66 5 0 6 71 80977791 80977726 2.710000e-15 95.3
53 TraesCS4D01G188000 chr6B 97.368 38 1 0 318 355 700611483 700611446 2.120000e-06 65.8
54 TraesCS4D01G188000 chr3D 86.290 248 23 9 8788 9035 555757913 555758149 9.070000e-65 259.0
55 TraesCS4D01G188000 chr3D 89.041 73 5 2 2 73 565051337 565051407 4.530000e-13 87.9
56 TraesCS4D01G188000 chr3D 92.000 50 2 2 306 355 369508187 369508140 1.640000e-07 69.4
57 TraesCS4D01G188000 chr3D 91.837 49 2 2 304 351 178589217 178589264 5.900000e-07 67.6
58 TraesCS4D01G188000 chr1D 89.848 197 19 1 8560 8756 391278788 391278983 1.520000e-62 252.0
59 TraesCS4D01G188000 chr1D 95.238 147 7 0 354 500 297539945 297540091 5.500000e-57 233.0
60 TraesCS4D01G188000 chr1D 85.542 83 3 4 7171 7244 263322584 263322502 2.730000e-10 78.7
61 TraesCS4D01G188000 chr1B 89.529 191 19 1 8567 8757 269169697 269169886 3.280000e-59 241.0
62 TraesCS4D01G188000 chr1B 90.196 51 4 1 306 355 1279234 1279184 2.120000e-06 65.8
63 TraesCS4D01G188000 chr6D 94.631 149 8 0 354 502 429084184 429084332 1.980000e-56 231.0
64 TraesCS4D01G188000 chr6D 93.038 158 10 1 354 511 11913347 11913191 7.110000e-56 230.0
65 TraesCS4D01G188000 chr6D 90.385 52 3 2 304 355 11913511 11913462 5.900000e-07 67.6
66 TraesCS4D01G188000 chr2A 94.118 153 7 2 354 504 51641403 51641251 1.980000e-56 231.0
67 TraesCS4D01G188000 chr7B 95.385 65 3 0 6 70 673660752 673660816 4.500000e-18 104.0
68 TraesCS4D01G188000 chr7B 91.935 62 5 0 6 67 171990110 171990049 4.530000e-13 87.9
69 TraesCS4D01G188000 chr7B 92.000 50 3 1 306 355 680872579 680872531 1.640000e-07 69.4
70 TraesCS4D01G188000 chr7A 93.651 63 4 0 5 67 64622124 64622062 2.710000e-15 95.3
71 TraesCS4D01G188000 chr7A 87.037 54 7 0 6964 7017 332446804 332446751 2.740000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G188000 chr4D 327376307 327385409 9102 False 16811.000000 16811 100.000000 1 9103 1 chr4D.!!$F1 9102
1 TraesCS4D01G188000 chr4A 143695575 143704647 9072 True 3545.000000 10759 94.341000 1 9103 4 chr4A.!!$R2 9102
2 TraesCS4D01G188000 chr4B 406674419 406683837 9418 False 1874.142857 9779 91.295714 1 9079 7 chr4B.!!$F1 9078
3 TraesCS4D01G188000 chr5A 289857167 289857677 510 False 531.000000 531 85.437000 8565 9077 1 chr5A.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.026285 CGTAAGGAAATCTTGCCGCG 59.974 55.000 0.00 0.0 35.09 6.46 F
428 552 0.031111 TGCTCATAGGGGTAGGCTGT 60.031 55.000 0.00 0.0 0.00 4.40 F
452 576 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.0 0.00 4.02 F
477 601 0.102300 TGCGCGTGTATATGAGCACT 59.898 50.000 8.43 0.0 42.50 4.40 F
1137 1609 0.820871 AGAGAGCGTTGATGGACTCC 59.179 55.000 0.00 0.0 0.00 3.85 F
1404 1886 1.069022 TGCTGAATGAGTTTGCTTCGC 60.069 47.619 0.00 0.0 0.00 4.70 F
2218 2707 1.131126 CTTGATTGCGGTGACATGGTC 59.869 52.381 0.00 0.0 0.00 4.02 F
2999 3499 1.103398 AGGTGGCACTGAAGCAACAC 61.103 55.000 18.45 0.0 40.30 3.32 F
3503 4007 1.269936 ACGAAAGTAGGTTGGACACCG 60.270 52.381 0.00 0.0 44.52 4.94 F
5018 5550 2.158957 GGTTGACAAGTCAGAGGTCACA 60.159 50.000 2.87 0.0 40.92 3.58 F
5558 6092 1.463056 CGGAGCAAAACATTACTCGCA 59.537 47.619 0.00 0.0 0.00 5.10 F
6125 6659 0.610174 ATGAGCAGCAAAGACCTCGA 59.390 50.000 0.00 0.0 0.00 4.04 F
7395 8096 1.106285 CCTTGCCCTTGAATGGTAGC 58.894 55.000 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2440 0.387750 GCGCTCAGAAAGGCAAAAGG 60.388 55.000 0.00 0.00 0.00 3.11 R
2143 2632 1.815421 CGCTTCCCCCTCGTTCATG 60.815 63.158 0.00 0.00 0.00 3.07 R
2218 2707 3.138798 GGGCAGTGCATGGAGCTG 61.139 66.667 18.61 10.84 45.94 4.24 R
2457 2952 3.773560 ACGGATGAAAAGGGAATCCAAA 58.226 40.909 0.09 0.00 39.98 3.28 R
2662 3158 0.954452 CAGCTTTCACCTGTCCCAAC 59.046 55.000 0.00 0.00 0.00 3.77 R
2999 3499 3.405831 TGACTGCTGTTGGAGAATTGAG 58.594 45.455 0.00 0.00 35.49 3.02 R
3058 3558 3.764885 AACCGCTGTCAAGAATTATGC 57.235 42.857 0.00 0.00 0.00 3.14 R
3809 4318 4.394729 TGGATCAGAAACTGGGTGTAAAC 58.605 43.478 0.00 0.00 31.51 2.01 R
5252 5784 1.341080 ACATCAAGGTTTTGGCCTGG 58.659 50.000 3.32 0.00 39.17 4.45 R
5975 6509 1.133606 TCCCCACAAACTGTTTCCCTC 60.134 52.381 2.13 0.00 0.00 4.30 R
7270 7889 0.601558 TTGTGTCGTGGAGCTCCTAC 59.398 55.000 32.28 25.33 36.82 3.18 R
7483 8211 4.580995 TGATTTTCTAAAGGCGTGTCCAAA 59.419 37.500 0.00 0.00 37.29 3.28 R
8683 9751 0.095762 CCGAACCGAACGTAAATGGC 59.904 55.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.198068 CTCCAATACAGACATCCAACCG 58.802 50.000 0.00 0.00 0.00 4.44
82 83 0.248094 GCGTAAGGAAATCTTGCCGC 60.248 55.000 8.16 8.16 43.95 6.53
83 84 0.026285 CGTAAGGAAATCTTGCCGCG 59.974 55.000 0.00 0.00 35.09 6.46
85 86 1.373590 TAAGGAAATCTTGCCGCGGC 61.374 55.000 42.35 42.35 42.35 6.53
166 168 5.451242 GGCTTGAACCAAACACACTCATAAA 60.451 40.000 0.00 0.00 0.00 1.40
228 230 7.823745 AGACAATCTTAGTCACAAACCAAAT 57.176 32.000 0.00 0.00 38.46 2.32
319 443 7.030165 ACATCCTAGATACATTTCTATTCGCG 58.970 38.462 0.00 0.00 0.00 5.87
320 444 6.812879 TCCTAGATACATTTCTATTCGCGA 57.187 37.500 3.71 3.71 0.00 5.87
321 445 7.210718 TCCTAGATACATTTCTATTCGCGAA 57.789 36.000 25.66 25.66 0.00 4.70
322 446 7.082602 TCCTAGATACATTTCTATTCGCGAAC 58.917 38.462 26.00 6.63 0.00 3.95
323 447 6.308282 CCTAGATACATTTCTATTCGCGAACC 59.692 42.308 26.00 1.95 0.00 3.62
324 448 5.597806 AGATACATTTCTATTCGCGAACCA 58.402 37.500 26.00 14.16 0.00 3.67
325 449 6.046593 AGATACATTTCTATTCGCGAACCAA 58.953 36.000 26.00 13.94 0.00 3.67
326 450 4.336532 ACATTTCTATTCGCGAACCAAC 57.663 40.909 26.00 0.00 0.00 3.77
327 451 3.126343 ACATTTCTATTCGCGAACCAACC 59.874 43.478 26.00 0.00 0.00 3.77
328 452 2.754946 TTCTATTCGCGAACCAACCT 57.245 45.000 26.00 9.84 0.00 3.50
329 453 2.004583 TCTATTCGCGAACCAACCTG 57.995 50.000 26.00 9.14 0.00 4.00
330 454 1.274167 TCTATTCGCGAACCAACCTGT 59.726 47.619 26.00 8.21 0.00 4.00
331 455 1.393539 CTATTCGCGAACCAACCTGTG 59.606 52.381 26.00 1.29 0.00 3.66
344 468 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
345 469 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
346 470 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
347 471 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
348 472 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
349 473 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
350 474 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
362 486 2.360980 AGGGACTCTGCCTACGCT 59.639 61.111 0.00 0.00 35.97 5.07
363 487 2.055042 AGGGACTCTGCCTACGCTG 61.055 63.158 0.00 0.00 35.97 5.18
364 488 2.052690 GGGACTCTGCCTACGCTGA 61.053 63.158 0.00 0.00 40.29 4.26
365 489 1.139947 GGACTCTGCCTACGCTGAC 59.860 63.158 0.00 0.00 37.97 3.51
366 490 1.316706 GGACTCTGCCTACGCTGACT 61.317 60.000 0.00 0.00 37.97 3.41
367 491 0.528470 GACTCTGCCTACGCTGACTT 59.472 55.000 0.00 0.00 37.97 3.01
368 492 0.528470 ACTCTGCCTACGCTGACTTC 59.472 55.000 0.00 0.00 37.97 3.01
369 493 0.528017 CTCTGCCTACGCTGACTTCA 59.472 55.000 0.00 0.00 37.97 3.02
370 494 1.135915 CTCTGCCTACGCTGACTTCAT 59.864 52.381 0.00 0.00 37.97 2.57
371 495 2.359214 CTCTGCCTACGCTGACTTCATA 59.641 50.000 0.00 0.00 37.97 2.15
372 496 2.758423 TCTGCCTACGCTGACTTCATAA 59.242 45.455 0.00 0.00 37.97 1.90
373 497 3.194755 TCTGCCTACGCTGACTTCATAAA 59.805 43.478 0.00 0.00 37.97 1.40
374 498 4.122776 CTGCCTACGCTGACTTCATAAAT 58.877 43.478 0.00 0.00 36.08 1.40
375 499 4.513442 TGCCTACGCTGACTTCATAAATT 58.487 39.130 0.00 0.00 35.36 1.82
376 500 4.941263 TGCCTACGCTGACTTCATAAATTT 59.059 37.500 0.00 0.00 35.36 1.82
377 501 5.064707 TGCCTACGCTGACTTCATAAATTTC 59.935 40.000 0.00 0.00 35.36 2.17
378 502 5.064707 GCCTACGCTGACTTCATAAATTTCA 59.935 40.000 0.00 0.00 0.00 2.69
379 503 6.403200 GCCTACGCTGACTTCATAAATTTCAA 60.403 38.462 0.00 0.00 0.00 2.69
380 504 7.182761 CCTACGCTGACTTCATAAATTTCAAG 58.817 38.462 0.00 0.00 0.00 3.02
381 505 6.801539 ACGCTGACTTCATAAATTTCAAGA 57.198 33.333 0.00 0.00 0.00 3.02
382 506 7.383102 ACGCTGACTTCATAAATTTCAAGAT 57.617 32.000 0.00 0.00 0.00 2.40
383 507 7.246311 ACGCTGACTTCATAAATTTCAAGATG 58.754 34.615 0.00 0.00 0.00 2.90
384 508 7.119699 ACGCTGACTTCATAAATTTCAAGATGA 59.880 33.333 0.00 0.00 0.00 2.92
385 509 8.127327 CGCTGACTTCATAAATTTCAAGATGAT 58.873 33.333 0.00 0.00 0.00 2.45
393 517 8.301720 TCATAAATTTCAAGATGATATGCCAGC 58.698 33.333 0.00 0.00 0.00 4.85
394 518 6.726490 AAATTTCAAGATGATATGCCAGCT 57.274 33.333 0.00 0.00 33.74 4.24
395 519 5.961396 ATTTCAAGATGATATGCCAGCTC 57.039 39.130 0.00 0.00 30.67 4.09
396 520 4.426736 TTCAAGATGATATGCCAGCTCA 57.573 40.909 0.00 0.00 30.67 4.26
397 521 4.004196 TCAAGATGATATGCCAGCTCAG 57.996 45.455 0.00 0.00 30.67 3.35
398 522 3.390311 TCAAGATGATATGCCAGCTCAGT 59.610 43.478 0.00 0.00 30.67 3.41
399 523 3.681593 AGATGATATGCCAGCTCAGTC 57.318 47.619 0.00 0.00 0.00 3.51
400 524 3.241156 AGATGATATGCCAGCTCAGTCT 58.759 45.455 0.00 0.00 0.00 3.24
401 525 3.647113 AGATGATATGCCAGCTCAGTCTT 59.353 43.478 0.00 0.00 0.00 3.01
402 526 3.920231 TGATATGCCAGCTCAGTCTTT 57.080 42.857 0.00 0.00 0.00 2.52
403 527 3.801698 TGATATGCCAGCTCAGTCTTTC 58.198 45.455 0.00 0.00 0.00 2.62
404 528 2.299993 TATGCCAGCTCAGTCTTTCG 57.700 50.000 0.00 0.00 0.00 3.46
405 529 0.610174 ATGCCAGCTCAGTCTTTCGA 59.390 50.000 0.00 0.00 0.00 3.71
406 530 0.392706 TGCCAGCTCAGTCTTTCGAA 59.607 50.000 0.00 0.00 0.00 3.71
407 531 1.074752 GCCAGCTCAGTCTTTCGAAG 58.925 55.000 0.00 0.00 0.00 3.79
408 532 1.719600 CCAGCTCAGTCTTTCGAAGG 58.280 55.000 0.00 0.00 0.00 3.46
409 533 1.001406 CCAGCTCAGTCTTTCGAAGGT 59.999 52.381 7.20 0.00 0.00 3.50
410 534 2.064762 CAGCTCAGTCTTTCGAAGGTG 58.935 52.381 7.20 1.58 0.00 4.00
411 535 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
412 536 1.606737 GCTCAGTCTTTCGAAGGTGCT 60.607 52.381 7.20 4.49 0.00 4.40
413 537 2.333014 CTCAGTCTTTCGAAGGTGCTC 58.667 52.381 7.20 0.00 0.00 4.26
414 538 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
415 539 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
416 540 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
417 541 3.862267 CAGTCTTTCGAAGGTGCTCATAG 59.138 47.826 7.20 0.00 0.00 2.23
418 542 3.118956 AGTCTTTCGAAGGTGCTCATAGG 60.119 47.826 7.20 0.00 0.00 2.57
419 543 2.168521 TCTTTCGAAGGTGCTCATAGGG 59.831 50.000 7.20 0.00 0.00 3.53
420 544 0.830648 TTCGAAGGTGCTCATAGGGG 59.169 55.000 0.00 0.00 0.00 4.79
421 545 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
422 546 1.063492 TCGAAGGTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 0.00 3.69
423 547 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
424 548 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
425 549 0.764752 AGGTGCTCATAGGGGTAGGC 60.765 60.000 0.00 0.00 0.00 3.93
426 550 0.764752 GGTGCTCATAGGGGTAGGCT 60.765 60.000 0.00 0.00 0.00 4.58
427 551 0.394565 GTGCTCATAGGGGTAGGCTG 59.605 60.000 0.00 0.00 0.00 4.85
428 552 0.031111 TGCTCATAGGGGTAGGCTGT 60.031 55.000 0.00 0.00 0.00 4.40
429 553 0.394565 GCTCATAGGGGTAGGCTGTG 59.605 60.000 0.00 0.00 0.00 3.66
430 554 0.394565 CTCATAGGGGTAGGCTGTGC 59.605 60.000 0.00 0.00 0.00 4.57
431 555 1.069765 CATAGGGGTAGGCTGTGCG 59.930 63.158 0.00 0.00 0.00 5.34
432 556 1.382695 ATAGGGGTAGGCTGTGCGT 60.383 57.895 0.00 0.00 0.00 5.24
433 557 1.686325 ATAGGGGTAGGCTGTGCGTG 61.686 60.000 0.00 0.00 0.00 5.34
434 558 4.016706 GGGGTAGGCTGTGCGTGT 62.017 66.667 0.00 0.00 0.00 4.49
435 559 2.742372 GGGTAGGCTGTGCGTGTG 60.742 66.667 0.00 0.00 0.00 3.82
436 560 2.030562 GGTAGGCTGTGCGTGTGT 59.969 61.111 0.00 0.00 0.00 3.72
437 561 2.317609 GGTAGGCTGTGCGTGTGTG 61.318 63.158 0.00 0.00 0.00 3.82
438 562 2.664851 TAGGCTGTGCGTGTGTGC 60.665 61.111 0.00 0.00 0.00 4.57
441 565 4.236416 GCTGTGCGTGTGTGCGTT 62.236 61.111 0.00 0.00 37.81 4.84
442 566 2.053116 CTGTGCGTGTGTGCGTTC 60.053 61.111 0.00 0.00 37.81 3.95
443 567 2.807906 CTGTGCGTGTGTGCGTTCA 61.808 57.895 0.00 0.00 37.81 3.18
444 568 2.104770 CTGTGCGTGTGTGCGTTCAT 62.105 55.000 0.00 0.00 37.81 2.57
445 569 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
446 570 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
447 571 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
448 572 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
449 573 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
450 574 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
451 575 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
452 576 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
453 577 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
454 578 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
455 579 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
456 580 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
457 581 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
458 582 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
459 583 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
460 584 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
461 585 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
462 586 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
463 587 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
464 588 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
465 589 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
466 590 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
467 591 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
468 592 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
469 593 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
470 594 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
471 595 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
472 596 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
473 597 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
474 598 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
476 600 2.588731 TGCGCGTGTATATGAGCAC 58.411 52.632 8.43 0.00 42.50 4.40
477 601 0.102300 TGCGCGTGTATATGAGCACT 59.898 50.000 8.43 0.00 42.50 4.40
478 602 1.209128 GCGCGTGTATATGAGCACTT 58.791 50.000 8.43 0.00 38.35 3.16
479 603 1.071239 GCGCGTGTATATGAGCACTTG 60.071 52.381 8.43 0.00 38.35 3.16
480 604 1.071239 CGCGTGTATATGAGCACTTGC 60.071 52.381 0.00 0.00 42.49 4.01
492 616 2.232239 GCACTTGCGTCTGTATTGTG 57.768 50.000 0.00 0.00 0.00 3.33
493 617 1.531149 GCACTTGCGTCTGTATTGTGT 59.469 47.619 0.00 0.00 0.00 3.72
494 618 2.032030 GCACTTGCGTCTGTATTGTGTT 60.032 45.455 0.00 0.00 0.00 3.32
495 619 3.185594 GCACTTGCGTCTGTATTGTGTTA 59.814 43.478 0.00 0.00 0.00 2.41
496 620 4.319190 GCACTTGCGTCTGTATTGTGTTAA 60.319 41.667 0.00 0.00 0.00 2.01
497 621 5.743467 CACTTGCGTCTGTATTGTGTTAAA 58.257 37.500 0.00 0.00 0.00 1.52
498 622 6.195868 CACTTGCGTCTGTATTGTGTTAAAA 58.804 36.000 0.00 0.00 0.00 1.52
499 623 6.689241 CACTTGCGTCTGTATTGTGTTAAAAA 59.311 34.615 0.00 0.00 0.00 1.94
566 690 1.206371 ACTCCATTGTACACGCCCTAC 59.794 52.381 0.00 0.00 0.00 3.18
643 774 4.542525 TGGTTTAGTACTTGATCCCCCATT 59.457 41.667 0.00 0.00 0.00 3.16
644 775 5.015817 TGGTTTAGTACTTGATCCCCCATTT 59.984 40.000 0.00 0.00 0.00 2.32
755 889 9.185192 GAATCATAATAACTGCTTATTGTTGGC 57.815 33.333 2.12 0.00 34.83 4.52
832 1288 1.009829 GCAGTGAATAGTTGCGGAGG 58.990 55.000 0.00 0.00 0.00 4.30
856 1312 3.118884 AGAGCAATCAAATCAACATGGCC 60.119 43.478 0.00 0.00 0.00 5.36
907 1363 2.125512 CCCCAGAACGGCGAAGAG 60.126 66.667 16.62 0.00 0.00 2.85
910 1366 1.014564 CCCAGAACGGCGAAGAGAAC 61.015 60.000 16.62 0.00 0.00 3.01
935 1394 2.904131 GGAGGAGGCGAAAGGGAG 59.096 66.667 0.00 0.00 0.00 4.30
963 1422 7.769044 ACGAGAAATATATAAATCCCCATTCCG 59.231 37.037 0.00 0.00 0.00 4.30
1071 1531 3.151022 CTCCCACCTCTCCGGCTC 61.151 72.222 0.00 0.00 35.61 4.70
1072 1532 4.779733 TCCCACCTCTCCGGCTCC 62.780 72.222 0.00 0.00 35.61 4.70
1137 1609 0.820871 AGAGAGCGTTGATGGACTCC 59.179 55.000 0.00 0.00 0.00 3.85
1166 1638 3.194755 GCCTAATTCCACCGTCCATTTTT 59.805 43.478 0.00 0.00 0.00 1.94
1403 1885 2.975410 TGCTGAATGAGTTTGCTTCG 57.025 45.000 0.00 0.00 0.00 3.79
1404 1886 1.069022 TGCTGAATGAGTTTGCTTCGC 60.069 47.619 0.00 0.00 0.00 4.70
1405 1887 1.198637 GCTGAATGAGTTTGCTTCGCT 59.801 47.619 0.00 0.00 0.00 4.93
1588 2070 3.121030 CGCGGTCCAGAAGGCAAG 61.121 66.667 0.00 0.00 33.74 4.01
1589 2071 3.435186 GCGGTCCAGAAGGCAAGC 61.435 66.667 0.00 0.00 33.74 4.01
1590 2072 3.121030 CGGTCCAGAAGGCAAGCG 61.121 66.667 0.00 0.00 33.74 4.68
1591 2073 3.435186 GGTCCAGAAGGCAAGCGC 61.435 66.667 0.00 0.00 37.44 5.92
1592 2074 3.793144 GTCCAGAAGGCAAGCGCG 61.793 66.667 0.00 0.00 39.92 6.86
2218 2707 1.131126 CTTGATTGCGGTGACATGGTC 59.869 52.381 0.00 0.00 0.00 4.02
2235 2724 3.138798 CAGCTCCATGCACTGCCC 61.139 66.667 0.00 0.00 45.94 5.36
2259 2748 6.253942 CCCGTTTGTTTTTCGTCTTAATTTGT 59.746 34.615 0.00 0.00 0.00 2.83
2410 2903 2.027385 GGTCAATCTGCTTCCCCAATC 58.973 52.381 0.00 0.00 0.00 2.67
2425 2918 3.516700 CCCCAATCTTCTTTTGATGGCTT 59.483 43.478 0.00 0.00 0.00 4.35
2432 2925 9.512435 CAATCTTCTTTTGATGGCTTATTACTG 57.488 33.333 0.00 0.00 0.00 2.74
2490 2986 2.483583 TCATCCGTTGTGTTGTTTGC 57.516 45.000 0.00 0.00 0.00 3.68
2580 3076 6.515272 AATGAATTGGTATGTTCAGTGTCC 57.485 37.500 0.00 0.00 37.72 4.02
2584 3080 6.206634 TGAATTGGTATGTTCAGTGTCCTTTC 59.793 38.462 0.00 0.00 31.24 2.62
2662 3158 6.019640 GCAATGTGATAACCAAAATCAATCCG 60.020 38.462 0.00 0.00 35.23 4.18
2779 3275 5.423886 AGTGAGAGAAAGGCAAGCTATAAC 58.576 41.667 0.00 0.00 0.00 1.89
2999 3499 1.103398 AGGTGGCACTGAAGCAACAC 61.103 55.000 18.45 0.00 40.30 3.32
3036 3536 3.753272 GCAGTCAAAGCATCTTGAGGTAA 59.247 43.478 0.00 0.00 36.01 2.85
3503 4007 1.269936 ACGAAAGTAGGTTGGACACCG 60.270 52.381 0.00 0.00 44.52 4.94
3639 4148 2.542595 GTGTACTTTCGGTGGTTCACTG 59.457 50.000 0.00 0.73 41.65 3.66
3998 4509 6.525628 GCTGCATTGATGATGGAAATATTACG 59.474 38.462 0.00 0.00 35.52 3.18
4084 4595 4.508662 GGACCATCTTCAACTCAAGGTAG 58.491 47.826 0.00 0.00 0.00 3.18
4147 4659 7.133891 AGTAAATTCACAGGAAATTCTGTCG 57.866 36.000 0.00 0.00 45.24 4.35
5018 5550 2.158957 GGTTGACAAGTCAGAGGTCACA 60.159 50.000 2.87 0.00 40.92 3.58
5252 5784 6.428159 CCTACATCAATGTATTAACAGGAGGC 59.572 42.308 3.44 0.00 41.92 4.70
5384 5916 6.256757 GTGCTGCTCGACTTAATAAAGAATCT 59.743 38.462 0.00 0.00 36.50 2.40
5558 6092 1.463056 CGGAGCAAAACATTACTCGCA 59.537 47.619 0.00 0.00 0.00 5.10
5726 6260 5.065602 TCTGCATCAGATCTTGCACATAAAC 59.934 40.000 16.40 0.00 43.54 2.01
5975 6509 5.356470 GGTGAATTTTCAGATGGGAGAAGAG 59.644 44.000 0.00 0.00 37.98 2.85
6125 6659 0.610174 ATGAGCAGCAAAGACCTCGA 59.390 50.000 0.00 0.00 0.00 4.04
6143 6677 4.330074 CCTCGATTTTGCTCAACGAATACT 59.670 41.667 0.00 0.00 32.85 2.12
6513 7048 4.462508 TGTTGTTTGCCAAGTTTGATCA 57.537 36.364 0.00 0.00 32.51 2.92
6514 7049 4.180057 TGTTGTTTGCCAAGTTTGATCAC 58.820 39.130 0.00 0.00 32.51 3.06
6644 7179 7.964666 AGTAAGAGGAGAGCTTAATGTTAGT 57.035 36.000 0.00 0.00 30.34 2.24
6715 7258 9.712305 TTAGTGAGTAGAGAAGGAAGATTTTTG 57.288 33.333 0.00 0.00 0.00 2.44
6724 7267 7.769970 AGAGAAGGAAGATTTTTGATGCTCTAG 59.230 37.037 0.00 0.00 0.00 2.43
6750 7293 9.559958 GTTATTCCTTTACATCATGTGAAACTG 57.440 33.333 0.00 0.00 38.04 3.16
6997 7585 6.618287 TCTGAACTAAAACCATGACACTTG 57.382 37.500 0.00 0.00 0.00 3.16
7086 7705 9.793245 GTATCTGAAATACATTTTACGATTCCG 57.207 33.333 0.00 0.00 42.50 4.30
7180 7799 3.756963 GCAAAATTAGTTCTCCCTCCGTT 59.243 43.478 0.00 0.00 0.00 4.44
7185 7804 2.544844 AGTTCTCCCTCCGTTCCATA 57.455 50.000 0.00 0.00 0.00 2.74
7186 7805 2.829023 AGTTCTCCCTCCGTTCCATAA 58.171 47.619 0.00 0.00 0.00 1.90
7187 7806 3.385115 AGTTCTCCCTCCGTTCCATAAT 58.615 45.455 0.00 0.00 0.00 1.28
7188 7807 4.553678 AGTTCTCCCTCCGTTCCATAATA 58.446 43.478 0.00 0.00 0.00 0.98
7189 7808 5.155905 AGTTCTCCCTCCGTTCCATAATAT 58.844 41.667 0.00 0.00 0.00 1.28
7190 7809 6.320518 AGTTCTCCCTCCGTTCCATAATATA 58.679 40.000 0.00 0.00 0.00 0.86
7191 7810 6.785963 AGTTCTCCCTCCGTTCCATAATATAA 59.214 38.462 0.00 0.00 0.00 0.98
7192 7811 6.852420 TCTCCCTCCGTTCCATAATATAAG 57.148 41.667 0.00 0.00 0.00 1.73
7193 7812 6.558498 TCTCCCTCCGTTCCATAATATAAGA 58.442 40.000 0.00 0.00 0.00 2.10
7194 7813 7.014449 TCTCCCTCCGTTCCATAATATAAGAA 58.986 38.462 0.00 0.00 0.00 2.52
7195 7814 7.001099 TCCCTCCGTTCCATAATATAAGAAC 57.999 40.000 5.67 5.67 36.19 3.01
7214 7833 9.843334 ATAAGAACGTTTTTCACACTACAAAAA 57.157 25.926 7.42 0.00 0.00 1.94
7215 7834 8.751302 AAGAACGTTTTTCACACTACAAAAAT 57.249 26.923 0.46 0.00 34.76 1.82
7216 7835 8.168681 AGAACGTTTTTCACACTACAAAAATG 57.831 30.769 0.46 7.29 41.34 2.32
7217 7836 7.810759 AGAACGTTTTTCACACTACAAAAATGT 59.189 29.630 0.46 8.31 46.45 2.71
7218 7837 7.876896 ACGTTTTTCACACTACAAAAATGTT 57.123 28.000 8.31 0.00 44.01 2.71
7219 7838 7.944997 ACGTTTTTCACACTACAAAAATGTTC 58.055 30.769 8.31 0.00 44.01 3.18
7220 7839 7.810759 ACGTTTTTCACACTACAAAAATGTTCT 59.189 29.630 8.31 0.00 44.01 3.01
7221 7840 8.643752 CGTTTTTCACACTACAAAAATGTTCTT 58.356 29.630 0.00 0.00 35.28 2.52
7246 7865 9.543231 TTATATTATCGGACAGAGGGAGTAATT 57.457 33.333 0.00 0.00 0.00 1.40
7247 7866 5.786264 TTATCGGACAGAGGGAGTAATTC 57.214 43.478 0.00 0.00 0.00 2.17
7395 8096 1.106285 CCTTGCCCTTGAATGGTAGC 58.894 55.000 0.00 0.00 0.00 3.58
7403 8104 4.497300 CCCTTGAATGGTAGCAAATGTTG 58.503 43.478 0.00 0.00 0.00 3.33
7404 8105 4.021192 CCCTTGAATGGTAGCAAATGTTGT 60.021 41.667 0.00 0.00 0.00 3.32
7405 8106 4.925054 CCTTGAATGGTAGCAAATGTTGTG 59.075 41.667 0.00 0.00 0.00 3.33
7900 8955 5.062809 CGAGATTTTTCTCAAGTACAGGAGC 59.937 44.000 8.49 0.00 36.59 4.70
8261 9318 5.452078 TCACCCAATTTTAAGCAACTGAG 57.548 39.130 0.00 0.00 0.00 3.35
8318 9376 5.355071 TGCTGGTTTATGTTAGCATTCTCTG 59.645 40.000 0.00 0.00 40.88 3.35
8561 9620 3.904717 TGTGTGAAACCCCTTACATGTT 58.095 40.909 2.30 0.00 34.36 2.71
8683 9751 7.941795 AGATACGATTTGGTTTCGGTAATAG 57.058 36.000 0.00 0.00 40.83 1.73
9094 10165 2.034179 GGTTTTGCACACCCTGACTTAC 59.966 50.000 3.13 0.00 0.00 2.34
9095 10166 1.588674 TTTGCACACCCTGACTTACG 58.411 50.000 0.00 0.00 0.00 3.18
9096 10167 0.466543 TTGCACACCCTGACTTACGT 59.533 50.000 0.00 0.00 0.00 3.57
9097 10168 0.249699 TGCACACCCTGACTTACGTG 60.250 55.000 0.00 0.00 0.00 4.49
9099 10170 0.677288 CACACCCTGACTTACGTGGA 59.323 55.000 0.00 0.00 0.00 4.02
9100 10171 1.275291 CACACCCTGACTTACGTGGAT 59.725 52.381 0.00 0.00 0.00 3.41
9101 10172 1.549170 ACACCCTGACTTACGTGGATC 59.451 52.381 0.00 0.00 0.00 3.36
9102 10173 1.548719 CACCCTGACTTACGTGGATCA 59.451 52.381 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.224402 GGATGTCTGTATTGGAGGCCTC 60.224 54.545 25.59 25.59 0.00 4.70
60 61 1.202188 GGCAAGATTTCCTTACGCTGC 60.202 52.381 0.00 0.00 32.86 5.25
82 83 4.109766 TCGTATCATACACTCAAAAGCCG 58.890 43.478 0.00 0.00 0.00 5.52
83 84 5.502544 GCTTCGTATCATACACTCAAAAGCC 60.503 44.000 0.00 0.00 31.57 4.35
85 86 5.006746 GGGCTTCGTATCATACACTCAAAAG 59.993 44.000 0.00 0.00 0.00 2.27
123 125 6.775629 TCAAGCCTTACCTTAGTCAAAATGTT 59.224 34.615 0.00 0.00 0.00 2.71
124 126 6.303839 TCAAGCCTTACCTTAGTCAAAATGT 58.696 36.000 0.00 0.00 0.00 2.71
128 130 5.067954 GGTTCAAGCCTTACCTTAGTCAAA 58.932 41.667 0.00 0.00 0.00 2.69
166 168 6.260936 CCTAACATTAGGCAAGTTCGATCAAT 59.739 38.462 4.75 0.00 43.43 2.57
228 230 8.221251 TGGTGCAAACTACATATTAATGGGATA 58.779 33.333 0.00 0.00 37.43 2.59
303 427 5.007332 GGTTGGTTCGCGAATAGAAATGTAT 59.993 40.000 26.23 0.00 0.00 2.29
325 449 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
326 450 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
327 451 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
328 452 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
329 453 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
330 454 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
331 455 2.170817 GAGTCCCTCTAACCATCCAACC 59.829 54.545 0.00 0.00 0.00 3.77
332 456 3.108376 AGAGTCCCTCTAACCATCCAAC 58.892 50.000 0.00 0.00 39.28 3.77
333 457 3.107601 CAGAGTCCCTCTAACCATCCAA 58.892 50.000 0.00 0.00 38.99 3.53
334 458 2.752030 CAGAGTCCCTCTAACCATCCA 58.248 52.381 0.00 0.00 38.99 3.41
335 459 1.414550 GCAGAGTCCCTCTAACCATCC 59.585 57.143 0.00 0.00 38.99 3.51
336 460 1.414550 GGCAGAGTCCCTCTAACCATC 59.585 57.143 7.33 0.00 38.99 3.51
337 461 1.008938 AGGCAGAGTCCCTCTAACCAT 59.991 52.381 12.47 0.09 38.99 3.55
338 462 0.413832 AGGCAGAGTCCCTCTAACCA 59.586 55.000 12.47 0.00 38.99 3.67
339 463 2.033372 GTAGGCAGAGTCCCTCTAACC 58.967 57.143 0.00 0.00 38.99 2.85
340 464 1.677052 CGTAGGCAGAGTCCCTCTAAC 59.323 57.143 0.00 0.00 38.99 2.34
341 465 2.022754 GCGTAGGCAGAGTCCCTCTAA 61.023 57.143 1.75 0.00 38.99 2.10
342 466 0.465824 GCGTAGGCAGAGTCCCTCTA 60.466 60.000 1.75 0.00 38.99 2.43
343 467 1.755008 GCGTAGGCAGAGTCCCTCT 60.755 63.158 1.75 0.00 42.11 3.69
344 468 1.755008 AGCGTAGGCAGAGTCCCTC 60.755 63.158 10.48 0.00 43.41 4.30
345 469 2.055042 CAGCGTAGGCAGAGTCCCT 61.055 63.158 10.48 0.00 43.41 4.20
346 470 2.052690 TCAGCGTAGGCAGAGTCCC 61.053 63.158 10.48 0.00 43.41 4.46
347 471 1.139947 GTCAGCGTAGGCAGAGTCC 59.860 63.158 10.48 0.00 43.41 3.85
348 472 0.528470 AAGTCAGCGTAGGCAGAGTC 59.472 55.000 10.48 0.00 43.41 3.36
349 473 0.528470 GAAGTCAGCGTAGGCAGAGT 59.472 55.000 10.48 7.25 43.41 3.24
350 474 0.528017 TGAAGTCAGCGTAGGCAGAG 59.472 55.000 10.48 0.00 43.41 3.35
351 475 1.186200 ATGAAGTCAGCGTAGGCAGA 58.814 50.000 10.48 4.09 43.41 4.26
352 476 2.871182 TATGAAGTCAGCGTAGGCAG 57.129 50.000 10.48 1.27 43.41 4.85
353 477 3.603158 TTTATGAAGTCAGCGTAGGCA 57.397 42.857 10.48 0.00 43.41 4.75
354 478 5.064707 TGAAATTTATGAAGTCAGCGTAGGC 59.935 40.000 0.00 0.00 40.37 3.93
355 479 6.662414 TGAAATTTATGAAGTCAGCGTAGG 57.338 37.500 0.00 0.00 0.00 3.18
356 480 7.963981 TCTTGAAATTTATGAAGTCAGCGTAG 58.036 34.615 0.00 0.00 0.00 3.51
357 481 7.899178 TCTTGAAATTTATGAAGTCAGCGTA 57.101 32.000 0.00 0.00 0.00 4.42
358 482 6.801539 TCTTGAAATTTATGAAGTCAGCGT 57.198 33.333 0.00 0.00 0.00 5.07
359 483 7.466805 TCATCTTGAAATTTATGAAGTCAGCG 58.533 34.615 0.00 0.00 0.00 5.18
367 491 8.301720 GCTGGCATATCATCTTGAAATTTATGA 58.698 33.333 4.30 4.30 33.20 2.15
368 492 8.304596 AGCTGGCATATCATCTTGAAATTTATG 58.695 33.333 0.00 0.00 0.00 1.90
369 493 8.418597 AGCTGGCATATCATCTTGAAATTTAT 57.581 30.769 0.00 0.00 0.00 1.40
370 494 7.503230 TGAGCTGGCATATCATCTTGAAATTTA 59.497 33.333 0.00 0.00 0.00 1.40
371 495 6.322969 TGAGCTGGCATATCATCTTGAAATTT 59.677 34.615 0.00 0.00 0.00 1.82
372 496 5.831525 TGAGCTGGCATATCATCTTGAAATT 59.168 36.000 0.00 0.00 0.00 1.82
373 497 5.382616 TGAGCTGGCATATCATCTTGAAAT 58.617 37.500 0.00 0.00 0.00 2.17
374 498 4.784177 TGAGCTGGCATATCATCTTGAAA 58.216 39.130 0.00 0.00 0.00 2.69
375 499 4.141551 ACTGAGCTGGCATATCATCTTGAA 60.142 41.667 0.00 0.00 0.00 2.69
376 500 3.390311 ACTGAGCTGGCATATCATCTTGA 59.610 43.478 0.00 0.00 0.00 3.02
377 501 3.741249 ACTGAGCTGGCATATCATCTTG 58.259 45.455 0.00 0.00 0.00 3.02
378 502 3.647113 AGACTGAGCTGGCATATCATCTT 59.353 43.478 0.00 0.00 0.00 2.40
379 503 3.241156 AGACTGAGCTGGCATATCATCT 58.759 45.455 0.00 5.63 0.00 2.90
380 504 3.681593 AGACTGAGCTGGCATATCATC 57.318 47.619 0.00 3.89 0.00 2.92
381 505 4.387598 GAAAGACTGAGCTGGCATATCAT 58.612 43.478 0.00 0.00 0.00 2.45
382 506 3.739209 CGAAAGACTGAGCTGGCATATCA 60.739 47.826 0.00 0.00 0.00 2.15
383 507 2.799412 CGAAAGACTGAGCTGGCATATC 59.201 50.000 0.00 0.00 0.00 1.63
384 508 2.432146 TCGAAAGACTGAGCTGGCATAT 59.568 45.455 0.00 0.00 33.31 1.78
385 509 1.824852 TCGAAAGACTGAGCTGGCATA 59.175 47.619 0.00 0.00 33.31 3.14
386 510 0.610174 TCGAAAGACTGAGCTGGCAT 59.390 50.000 0.00 0.00 33.31 4.40
387 511 0.392706 TTCGAAAGACTGAGCTGGCA 59.607 50.000 0.00 0.00 41.84 4.92
388 512 1.074752 CTTCGAAAGACTGAGCTGGC 58.925 55.000 0.00 0.00 41.84 4.85
389 513 1.001406 ACCTTCGAAAGACTGAGCTGG 59.999 52.381 0.00 0.00 41.84 4.85
390 514 2.064762 CACCTTCGAAAGACTGAGCTG 58.935 52.381 0.00 0.00 41.84 4.24
391 515 1.606737 GCACCTTCGAAAGACTGAGCT 60.607 52.381 0.00 0.00 41.84 4.09
392 516 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
393 517 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
394 518 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
395 519 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
396 520 3.118956 CCTATGAGCACCTTCGAAAGACT 60.119 47.826 0.00 0.00 41.84 3.24
397 521 3.190874 CCTATGAGCACCTTCGAAAGAC 58.809 50.000 0.00 0.00 41.84 3.01
398 522 2.168521 CCCTATGAGCACCTTCGAAAGA 59.831 50.000 0.00 0.00 39.20 2.52
399 523 2.555199 CCCTATGAGCACCTTCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
400 524 1.209504 CCCCTATGAGCACCTTCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
401 525 0.830648 CCCCTATGAGCACCTTCGAA 59.169 55.000 0.00 0.00 0.00 3.71
402 526 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
403 527 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
404 528 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
405 529 1.807814 CCTACCCCTATGAGCACCTT 58.192 55.000 0.00 0.00 0.00 3.50
406 530 0.764752 GCCTACCCCTATGAGCACCT 60.765 60.000 0.00 0.00 0.00 4.00
407 531 0.764752 AGCCTACCCCTATGAGCACC 60.765 60.000 0.00 0.00 0.00 5.01
408 532 0.394565 CAGCCTACCCCTATGAGCAC 59.605 60.000 0.00 0.00 0.00 4.40
409 533 0.031111 ACAGCCTACCCCTATGAGCA 60.031 55.000 0.00 0.00 0.00 4.26
410 534 0.394565 CACAGCCTACCCCTATGAGC 59.605 60.000 0.00 0.00 0.00 4.26
411 535 0.394565 GCACAGCCTACCCCTATGAG 59.605 60.000 0.00 0.00 0.00 2.90
412 536 1.399744 CGCACAGCCTACCCCTATGA 61.400 60.000 0.00 0.00 0.00 2.15
413 537 1.069765 CGCACAGCCTACCCCTATG 59.930 63.158 0.00 0.00 0.00 2.23
414 538 1.382695 ACGCACAGCCTACCCCTAT 60.383 57.895 0.00 0.00 0.00 2.57
415 539 2.038329 ACGCACAGCCTACCCCTA 59.962 61.111 0.00 0.00 0.00 3.53
416 540 3.706373 CACGCACAGCCTACCCCT 61.706 66.667 0.00 0.00 0.00 4.79
417 541 4.016706 ACACGCACAGCCTACCCC 62.017 66.667 0.00 0.00 0.00 4.95
418 542 2.742372 CACACGCACAGCCTACCC 60.742 66.667 0.00 0.00 0.00 3.69
419 543 2.030562 ACACACGCACAGCCTACC 59.969 61.111 0.00 0.00 0.00 3.18
420 544 2.954753 GCACACACGCACAGCCTAC 61.955 63.158 0.00 0.00 0.00 3.18
421 545 2.664851 GCACACACGCACAGCCTA 60.665 61.111 0.00 0.00 0.00 3.93
424 548 4.236416 AACGCACACACGCACAGC 62.236 61.111 0.00 0.00 36.19 4.40
425 549 2.053116 GAACGCACACACGCACAG 60.053 61.111 0.00 0.00 36.19 3.66
426 550 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
427 551 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
428 552 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
429 553 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
430 554 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
431 555 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
432 556 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
433 557 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
434 558 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
435 559 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
436 560 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
437 561 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
438 562 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
439 563 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
440 564 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
441 565 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
442 566 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
443 567 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
444 568 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
445 569 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
446 570 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
447 571 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
448 572 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
449 573 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
450 574 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
451 575 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
452 576 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
453 577 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
454 578 2.287909 TGCTCATATACACGCGCATACA 60.288 45.455 5.73 0.00 0.00 2.29
455 579 2.090658 GTGCTCATATACACGCGCATAC 59.909 50.000 5.73 0.00 33.41 2.39
456 580 2.030274 AGTGCTCATATACACGCGCATA 60.030 45.455 5.73 1.53 41.72 3.14
457 581 1.139989 GTGCTCATATACACGCGCAT 58.860 50.000 5.73 0.00 33.41 4.73
458 582 0.102300 AGTGCTCATATACACGCGCA 59.898 50.000 5.73 0.00 41.72 6.09
459 583 1.071239 CAAGTGCTCATATACACGCGC 60.071 52.381 5.73 0.00 41.72 6.86
460 584 1.071239 GCAAGTGCTCATATACACGCG 60.071 52.381 3.53 3.53 41.72 6.01
461 585 1.071239 CGCAAGTGCTCATATACACGC 60.071 52.381 1.21 0.00 41.72 5.34
462 586 2.910987 CGCAAGTGCTCATATACACG 57.089 50.000 1.21 0.00 41.72 4.49
534 658 8.932791 CGTGTACAATGGAGTATTCTAAAGTTT 58.067 33.333 0.00 0.00 0.00 2.66
566 690 0.037975 GAAAGCATGTTGGGGCAGTG 60.038 55.000 0.00 0.00 0.00 3.66
643 774 7.230913 TGAAACATACGGTGGATCCTTTTAAAA 59.769 33.333 14.23 0.00 0.00 1.52
644 775 6.715718 TGAAACATACGGTGGATCCTTTTAAA 59.284 34.615 14.23 0.00 0.00 1.52
746 880 4.455533 CAGCTAAGACAACAGCCAACAATA 59.544 41.667 0.00 0.00 38.61 1.90
755 889 5.698089 TCAATCTGTTCAGCTAAGACAACAG 59.302 40.000 12.24 12.24 44.76 3.16
832 1288 3.863424 CCATGTTGATTTGATTGCTCTGC 59.137 43.478 0.00 0.00 0.00 4.26
856 1312 0.390866 AATGCACTCTGCTCTCCACG 60.391 55.000 0.00 0.00 45.31 4.94
874 1330 4.525024 TCTGGGGTTTTGTTCGAGTAAAA 58.475 39.130 5.19 5.19 0.00 1.52
907 1363 1.448013 CCTCCTCCGCCTTTCGTTC 60.448 63.158 0.00 0.00 36.19 3.95
935 1394 9.110502 GAATGGGGATTTATATATTTCTCGTCC 57.889 37.037 0.00 0.00 0.00 4.79
963 1422 4.298332 CAAACAATTGTGGTTAGTGGAGC 58.702 43.478 12.82 0.00 30.93 4.70
1069 1529 2.913617 GGTTATAATGGAGGGAGGGGAG 59.086 54.545 0.00 0.00 0.00 4.30
1070 1530 2.254293 TGGTTATAATGGAGGGAGGGGA 59.746 50.000 0.00 0.00 0.00 4.81
1071 1531 2.713595 TGGTTATAATGGAGGGAGGGG 58.286 52.381 0.00 0.00 0.00 4.79
1072 1532 3.267031 GGATGGTTATAATGGAGGGAGGG 59.733 52.174 0.00 0.00 0.00 4.30
1073 1533 3.267031 GGGATGGTTATAATGGAGGGAGG 59.733 52.174 0.00 0.00 0.00 4.30
1137 1609 2.202824 TGGAATTAGGCCGTCGCG 60.203 61.111 0.00 0.00 35.02 5.87
1380 1862 3.637998 AGCAAACTCATTCAGCAACAG 57.362 42.857 0.00 0.00 0.00 3.16
1381 1863 3.548616 CGAAGCAAACTCATTCAGCAACA 60.549 43.478 0.00 0.00 0.00 3.33
1594 2076 2.288961 AACTGACGAACACAACGAGT 57.711 45.000 0.00 0.00 34.70 4.18
1947 2433 2.029560 GCTCAGAAAGGCAAAAGGGAAG 60.030 50.000 0.00 0.00 0.00 3.46
1951 2440 0.387750 GCGCTCAGAAAGGCAAAAGG 60.388 55.000 0.00 0.00 0.00 3.11
2143 2632 1.815421 CGCTTCCCCCTCGTTCATG 60.815 63.158 0.00 0.00 0.00 3.07
2218 2707 3.138798 GGGCAGTGCATGGAGCTG 61.139 66.667 18.61 10.84 45.94 4.24
2235 2724 7.212032 ACAAATTAAGACGAAAAACAAACGG 57.788 32.000 0.00 0.00 0.00 4.44
2259 2748 7.408756 AAGCATTTAAGCAGATTCCATGTAA 57.591 32.000 0.00 0.00 36.85 2.41
2410 2903 9.727627 GAATCAGTAATAAGCCATCAAAAGAAG 57.272 33.333 0.00 0.00 0.00 2.85
2425 2918 7.732025 ACGTATGTCCCATTGAATCAGTAATA 58.268 34.615 0.00 0.00 0.00 0.98
2432 2925 4.154195 GGCATACGTATGTCCCATTGAATC 59.846 45.833 30.63 13.29 36.11 2.52
2457 2952 3.773560 ACGGATGAAAAGGGAATCCAAA 58.226 40.909 0.09 0.00 39.98 3.28
2490 2986 2.859526 TCGACTCTAAGAGCTGCATG 57.140 50.000 1.02 0.00 32.04 4.06
2580 3076 7.736447 AACAAGAGACAAATACAGAGGAAAG 57.264 36.000 0.00 0.00 0.00 2.62
2584 3080 7.141363 CCAAAAACAAGAGACAAATACAGAGG 58.859 38.462 0.00 0.00 0.00 3.69
2662 3158 0.954452 CAGCTTTCACCTGTCCCAAC 59.046 55.000 0.00 0.00 0.00 3.77
2779 3275 9.552114 CATTGTTGAAGCATAAAGAAGAGTAAG 57.448 33.333 0.00 0.00 0.00 2.34
2999 3499 3.405831 TGACTGCTGTTGGAGAATTGAG 58.594 45.455 0.00 0.00 35.49 3.02
3058 3558 3.764885 AACCGCTGTCAAGAATTATGC 57.235 42.857 0.00 0.00 0.00 3.14
3493 3997 4.094442 GGATATCAAACTTCGGTGTCCAAC 59.906 45.833 4.83 0.00 0.00 3.77
3503 4007 7.830739 ACTGTGATTTTGGGATATCAAACTTC 58.169 34.615 4.83 0.00 36.49 3.01
3809 4318 4.394729 TGGATCAGAAACTGGGTGTAAAC 58.605 43.478 0.00 0.00 31.51 2.01
3998 4509 8.888579 TTCCAGATTTCGAAGGAGTAATAATC 57.111 34.615 0.00 0.00 0.00 1.75
4125 4637 6.567701 GCACGACAGAATTTCCTGTGAATTTA 60.568 38.462 4.62 0.00 46.45 1.40
4147 4659 7.891561 AGTATCTAAGAATACCTCATCTGCAC 58.108 38.462 0.00 0.00 33.42 4.57
4322 4834 7.872113 AGATGTTAAGAATAAAGAAGGCCTG 57.128 36.000 5.69 0.00 0.00 4.85
5018 5550 5.445964 TGTGCTTCTTTTAACCTTTCTCCT 58.554 37.500 0.00 0.00 0.00 3.69
5252 5784 1.341080 ACATCAAGGTTTTGGCCTGG 58.659 50.000 3.32 0.00 39.17 4.45
5384 5916 4.593206 TCCTTGAGCTCTTTAACTTCTCCA 59.407 41.667 16.19 0.00 0.00 3.86
5429 5961 9.710818 AGGACAGTAAGAAAGGAACATATAGTA 57.289 33.333 0.00 0.00 0.00 1.82
5558 6092 5.758296 TCTTCGTGTTTAATGCTTCAGAGTT 59.242 36.000 0.00 0.00 0.00 3.01
5726 6260 9.388506 ACTTTTACTTCTATGTGGATCATTCAG 57.611 33.333 0.00 0.00 37.91 3.02
5975 6509 1.133606 TCCCCACAAACTGTTTCCCTC 60.134 52.381 2.13 0.00 0.00 4.30
6125 6659 6.741992 TCATCAGTATTCGTTGAGCAAAAT 57.258 33.333 0.00 0.00 0.00 1.82
6143 6677 5.783111 ACGTCAATATCATCGGAATCATCA 58.217 37.500 0.00 0.00 0.00 3.07
6380 6915 1.134280 ACTAGGTGGCTGATCATGTGC 60.134 52.381 0.00 0.00 0.00 4.57
6513 7048 4.040936 TCCAGAAGTCTAGAAGCTCTGT 57.959 45.455 18.61 0.00 0.00 3.41
6514 7049 5.596836 ATTCCAGAAGTCTAGAAGCTCTG 57.403 43.478 15.40 15.40 27.85 3.35
6644 7179 4.466370 AGTTTACTCTTGATCCATGGACGA 59.534 41.667 18.99 10.37 0.00 4.20
6715 7258 9.717942 ATGATGTAAAGGAATAACTAGAGCATC 57.282 33.333 0.00 0.00 0.00 3.91
6724 7267 9.559958 CAGTTTCACATGATGTAAAGGAATAAC 57.440 33.333 0.00 0.00 0.00 1.89
6735 7278 6.974622 GTCAAGAAAACAGTTTCACATGATGT 59.025 34.615 0.00 0.00 44.82 3.06
6808 7351 8.999431 TGAAATACACGAAAAATCTTAGCTTCT 58.001 29.630 0.00 0.00 0.00 2.85
6975 7563 6.377327 ACAAGTGTCATGGTTTTAGTTCAG 57.623 37.500 0.00 0.00 0.00 3.02
6989 7577 4.567537 CCCTCCAATCCATAACAAGTGTCA 60.568 45.833 0.00 0.00 0.00 3.58
6997 7585 9.588096 AAATAATTACTCCCTCCAATCCATAAC 57.412 33.333 0.00 0.00 0.00 1.89
7006 7594 8.757307 ATATCTCCAAATAATTACTCCCTCCA 57.243 34.615 0.00 0.00 0.00 3.86
7073 7692 2.848302 GACGTCGTCGGAATCGTAAAAT 59.152 45.455 10.05 0.00 41.85 1.82
7079 7698 1.660097 CATAGACGTCGTCGGAATCG 58.340 55.000 19.11 3.26 41.85 3.34
7086 7705 5.512473 AGAAAGATAAGCATAGACGTCGTC 58.488 41.667 17.70 17.70 0.00 4.20
7156 7775 3.697166 GGAGGGAGAACTAATTTTGCCA 58.303 45.455 0.00 0.00 33.24 4.92
7160 7779 4.042435 TGGAACGGAGGGAGAACTAATTTT 59.958 41.667 0.00 0.00 0.00 1.82
7169 7788 6.558498 TCTTATATTATGGAACGGAGGGAGA 58.442 40.000 0.00 0.00 0.00 3.71
7188 7807 9.843334 TTTTTGTAGTGTGAAAAACGTTCTTAT 57.157 25.926 0.00 0.00 0.00 1.73
7189 7808 9.843334 ATTTTTGTAGTGTGAAAAACGTTCTTA 57.157 25.926 0.00 0.00 34.70 2.10
7190 7809 8.643752 CATTTTTGTAGTGTGAAAAACGTTCTT 58.356 29.630 0.00 0.00 34.70 2.52
7191 7810 7.810759 ACATTTTTGTAGTGTGAAAAACGTTCT 59.189 29.630 0.00 0.00 34.70 3.01
7192 7811 7.944997 ACATTTTTGTAGTGTGAAAAACGTTC 58.055 30.769 0.00 0.00 34.70 3.95
7193 7812 7.876896 ACATTTTTGTAGTGTGAAAAACGTT 57.123 28.000 0.00 0.00 34.70 3.99
7194 7813 7.810759 AGAACATTTTTGTAGTGTGAAAAACGT 59.189 29.630 0.00 0.00 34.70 3.99
7195 7814 8.168681 AGAACATTTTTGTAGTGTGAAAAACG 57.831 30.769 0.00 0.00 34.70 3.60
7212 7831 9.712305 CCTCTGTCCGATAATATAAGAACATTT 57.288 33.333 0.00 0.00 0.00 2.32
7213 7832 8.314751 CCCTCTGTCCGATAATATAAGAACATT 58.685 37.037 0.00 0.00 0.00 2.71
7214 7833 7.674348 TCCCTCTGTCCGATAATATAAGAACAT 59.326 37.037 0.00 0.00 0.00 2.71
7215 7834 7.008332 TCCCTCTGTCCGATAATATAAGAACA 58.992 38.462 0.00 0.00 0.00 3.18
7216 7835 7.177041 ACTCCCTCTGTCCGATAATATAAGAAC 59.823 40.741 0.00 0.00 0.00 3.01
7217 7836 7.239438 ACTCCCTCTGTCCGATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
7218 7837 6.791371 ACTCCCTCTGTCCGATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
7219 7838 8.577048 TTACTCCCTCTGTCCGATAATATAAG 57.423 38.462 0.00 0.00 0.00 1.73
7220 7839 9.543231 AATTACTCCCTCTGTCCGATAATATAA 57.457 33.333 0.00 0.00 0.00 0.98
7221 7840 9.186837 GAATTACTCCCTCTGTCCGATAATATA 57.813 37.037 0.00 0.00 0.00 0.86
7222 7841 7.674348 TGAATTACTCCCTCTGTCCGATAATAT 59.326 37.037 0.00 0.00 0.00 1.28
7223 7842 7.008332 TGAATTACTCCCTCTGTCCGATAATA 58.992 38.462 0.00 0.00 0.00 0.98
7224 7843 5.839063 TGAATTACTCCCTCTGTCCGATAAT 59.161 40.000 0.00 0.00 0.00 1.28
7225 7844 5.205821 TGAATTACTCCCTCTGTCCGATAA 58.794 41.667 0.00 0.00 0.00 1.75
7226 7845 4.800023 TGAATTACTCCCTCTGTCCGATA 58.200 43.478 0.00 0.00 0.00 2.92
7227 7846 3.643237 TGAATTACTCCCTCTGTCCGAT 58.357 45.455 0.00 0.00 0.00 4.18
7228 7847 3.095912 TGAATTACTCCCTCTGTCCGA 57.904 47.619 0.00 0.00 0.00 4.55
7229 7848 4.122776 CAATGAATTACTCCCTCTGTCCG 58.877 47.826 0.00 0.00 0.00 4.79
7269 7888 1.136984 GTGTCGTGGAGCTCCTACG 59.863 63.158 33.49 33.49 39.85 3.51
7270 7889 0.601558 TTGTGTCGTGGAGCTCCTAC 59.398 55.000 32.28 25.33 36.82 3.18
7355 8056 8.736244 GCAAGGAAGACTTTTGGTTACATATTA 58.264 33.333 2.61 0.00 37.29 0.98
7403 8104 7.407393 AGAGGTGAGAGGTTATTACTTACAC 57.593 40.000 0.00 0.00 0.00 2.90
7404 8105 9.186837 CTAAGAGGTGAGAGGTTATTACTTACA 57.813 37.037 0.00 0.00 0.00 2.41
7405 8106 9.406113 TCTAAGAGGTGAGAGGTTATTACTTAC 57.594 37.037 0.00 0.00 0.00 2.34
7472 8200 6.827586 AGGCGTGTCCAAATAATTTTAGAA 57.172 33.333 0.00 0.00 37.29 2.10
7483 8211 4.580995 TGATTTTCTAAAGGCGTGTCCAAA 59.419 37.500 0.00 0.00 37.29 3.28
7521 8250 9.549078 AAAACTGGGCGAAATTAAAAGAAAATA 57.451 25.926 0.00 0.00 0.00 1.40
7522 8251 8.341903 CAAAACTGGGCGAAATTAAAAGAAAAT 58.658 29.630 0.00 0.00 0.00 1.82
8239 9295 4.892934 ACTCAGTTGCTTAAAATTGGGTGA 59.107 37.500 0.00 0.00 0.00 4.02
8261 9318 2.096496 GTGGTATTCAGATGCACTGCAC 59.904 50.000 5.67 0.72 43.04 4.57
8539 9598 3.904717 ACATGTAAGGGGTTTCACACAA 58.095 40.909 0.00 0.00 0.00 3.33
8669 9737 4.571580 CGTAAATGGCTATTACCGAAACCA 59.428 41.667 7.88 0.00 31.08 3.67
8683 9751 0.095762 CCGAACCGAACGTAAATGGC 59.904 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.