Multiple sequence alignment - TraesCS4D01G187200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G187200 chr4D 100.000 3065 0 0 1 3065 325892946 325889882 0.000000e+00 5661.0
1 TraesCS4D01G187200 chr4D 97.541 244 6 0 500 743 48534353 48534596 4.730000e-113 418.0
2 TraesCS4D01G187200 chr4D 85.849 106 9 5 31 130 235130865 235130760 1.160000e-19 108.0
3 TraesCS4D01G187200 chr4B 91.374 2191 91 42 771 2904 406041153 406039004 0.000000e+00 2909.0
4 TraesCS4D01G187200 chr4B 91.631 466 33 6 3 466 406041631 406041170 9.270000e-180 640.0
5 TraesCS4D01G187200 chr4B 81.481 135 7 11 2917 3048 406037306 406037187 9.050000e-16 95.3
6 TraesCS4D01G187200 chr4B 88.136 59 7 0 464 522 338414696 338414638 1.520000e-08 71.3
7 TraesCS4D01G187200 chr4A 94.997 1599 49 14 833 2408 144839709 144841299 0.000000e+00 2481.0
8 TraesCS4D01G187200 chr4A 88.559 472 18 10 2406 2853 144841601 144842060 9.670000e-150 540.0
9 TraesCS4D01G187200 chr4A 86.383 470 52 9 1 468 144815100 144815559 1.270000e-138 503.0
10 TraesCS4D01G187200 chr4A 90.821 207 11 4 2846 3048 144843239 144843441 1.400000e-68 270.0
11 TraesCS4D01G187200 chr1D 97.984 248 4 1 501 747 16231991 16232238 2.180000e-116 429.0
12 TraesCS4D01G187200 chr1D 95.000 40 2 0 467 506 424452408 424452447 2.550000e-06 63.9
13 TraesCS4D01G187200 chr3D 97.942 243 5 0 501 743 94886601 94886843 3.650000e-114 422.0
14 TraesCS4D01G187200 chr3D 97.189 249 6 1 500 747 129016580 129016828 1.310000e-113 420.0
15 TraesCS4D01G187200 chr3D 97.934 242 5 0 502 743 327381958 327381717 1.310000e-113 420.0
16 TraesCS4D01G187200 chr3D 97.551 245 5 1 503 746 466677505 466677749 4.730000e-113 418.0
17 TraesCS4D01G187200 chr3D 96.787 249 7 1 499 746 358171286 358171038 6.110000e-112 414.0
18 TraesCS4D01G187200 chr3D 86.792 106 8 5 31 130 194111567 194111462 2.500000e-21 113.0
19 TraesCS4D01G187200 chr7D 96.787 249 8 0 497 745 16702767 16703015 1.700000e-112 416.0
20 TraesCS4D01G187200 chr6D 97.154 246 7 0 501 746 290329325 290329570 1.700000e-112 416.0
21 TraesCS4D01G187200 chr6D 85.849 106 9 5 31 130 75828560 75828455 1.160000e-19 108.0
22 TraesCS4D01G187200 chr6D 84.906 106 10 5 31 130 298811880 298811775 5.410000e-18 102.0
23 TraesCS4D01G187200 chr5A 90.672 268 22 3 503 770 664554012 664554276 1.350000e-93 353.0
24 TraesCS4D01G187200 chr5A 91.111 45 4 0 462 506 11413875 11413831 9.180000e-06 62.1
25 TraesCS4D01G187200 chr3A 87.778 270 29 4 502 770 13026337 13026071 2.290000e-81 313.0
26 TraesCS4D01G187200 chr1A 80.000 165 28 5 219 380 41871596 41871434 1.930000e-22 117.0
27 TraesCS4D01G187200 chr5D 85.321 109 10 5 28 130 446346288 446346396 1.160000e-19 108.0
28 TraesCS4D01G187200 chr5B 85.849 106 9 6 31 130 207099085 207098980 1.160000e-19 108.0
29 TraesCS4D01G187200 chr2B 85.321 109 10 5 28 130 486326502 486326610 1.160000e-19 108.0
30 TraesCS4D01G187200 chr7B 95.000 40 2 0 467 506 632997891 632997930 2.550000e-06 63.9
31 TraesCS4D01G187200 chr2A 95.000 40 2 0 467 506 772432242 772432203 2.550000e-06 63.9
32 TraesCS4D01G187200 chr7A 91.111 45 4 0 462 506 232292381 232292337 9.180000e-06 62.1
33 TraesCS4D01G187200 chr7A 91.111 45 4 0 462 506 232298361 232298317 9.180000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G187200 chr4D 325889882 325892946 3064 True 5661.000000 5661 100.000 1 3065 1 chr4D.!!$R2 3064
1 TraesCS4D01G187200 chr4B 406037187 406041631 4444 True 1214.766667 2909 88.162 3 3048 3 chr4B.!!$R2 3045
2 TraesCS4D01G187200 chr4A 144839709 144843441 3732 False 1097.000000 2481 91.459 833 3048 3 chr4A.!!$F2 2215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 663 0.1023 ATAATTTTTGCTCCCGCCGC 59.898 50.0 0.0 0.0 34.43 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2623 2992 0.034059 CAGAAACCACACGGCTCTCT 59.966 55.0 0.0 0.0 34.57 3.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.747460 CCCTAGCAAGCAAGCGCA 60.747 61.111 11.47 0.00 42.27 6.09
61 62 1.300971 CCTAGCAAGCAAGCGCAGAA 61.301 55.000 11.47 0.00 42.27 3.02
62 63 0.179205 CTAGCAAGCAAGCGCAGAAC 60.179 55.000 11.47 0.00 42.27 3.01
66 67 1.227943 AAGCAAGCGCAGAACCTCA 60.228 52.632 11.47 0.00 42.27 3.86
74 75 1.003116 GCGCAGAACCTCATGCTTATG 60.003 52.381 0.30 0.00 40.34 1.90
75 76 2.283298 CGCAGAACCTCATGCTTATGT 58.717 47.619 0.00 0.00 40.34 2.29
92 93 9.765795 ATGCTTATGTATAGTGGAGTAGTTTTC 57.234 33.333 0.00 0.00 0.00 2.29
116 117 8.236585 TCTTTTTCTCTCCATCAAAACAATCA 57.763 30.769 0.00 0.00 0.00 2.57
184 186 9.450807 AAAATTCTGAGAAACGTTAACATTCAG 57.549 29.630 18.22 10.54 33.63 3.02
309 311 8.899245 CAAACTAAATTTGCCACCATCGGGTT 62.899 42.308 0.00 0.00 42.41 4.11
451 454 9.326413 CAATCGTAGAAATTAAACTAGACCCAT 57.674 33.333 0.00 0.00 43.58 4.00
462 465 9.700831 ATTAAACTAGACCCATAGCAAGAAATT 57.299 29.630 0.00 0.00 0.00 1.82
471 474 9.384764 GACCCATAGCAAGAAATTATATACTCC 57.615 37.037 0.00 0.00 0.00 3.85
472 475 8.329502 ACCCATAGCAAGAAATTATATACTCCC 58.670 37.037 0.00 0.00 0.00 4.30
474 477 9.606631 CCATAGCAAGAAATTATATACTCCCTC 57.393 37.037 0.00 0.00 0.00 4.30
475 478 9.606631 CATAGCAAGAAATTATATACTCCCTCC 57.393 37.037 0.00 0.00 0.00 4.30
476 479 6.702329 AGCAAGAAATTATATACTCCCTCCG 58.298 40.000 0.00 0.00 0.00 4.63
478 481 6.590677 GCAAGAAATTATATACTCCCTCCGAC 59.409 42.308 0.00 0.00 0.00 4.79
479 482 7.525692 GCAAGAAATTATATACTCCCTCCGACT 60.526 40.741 0.00 0.00 0.00 4.18
480 483 7.706100 AGAAATTATATACTCCCTCCGACTC 57.294 40.000 0.00 0.00 0.00 3.36
481 484 7.239438 AGAAATTATATACTCCCTCCGACTCA 58.761 38.462 0.00 0.00 0.00 3.41
486 489 8.945195 TTATATACTCCCTCCGACTCAAAATA 57.055 34.615 0.00 0.00 0.00 1.40
487 490 7.850935 ATATACTCCCTCCGACTCAAAATAA 57.149 36.000 0.00 0.00 0.00 1.40
488 491 4.473477 ACTCCCTCCGACTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
489 492 3.838903 ACTCCCTCCGACTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
490 493 4.184629 CTCCCTCCGACTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
491 494 3.835978 TCCCTCCGACTCAAAATAAGTGA 59.164 43.478 0.00 0.00 0.00 3.41
492 495 3.933332 CCCTCCGACTCAAAATAAGTGAC 59.067 47.826 0.00 0.00 0.00 3.67
493 496 4.322801 CCCTCCGACTCAAAATAAGTGACT 60.323 45.833 0.00 0.00 0.00 3.41
494 497 4.865365 CCTCCGACTCAAAATAAGTGACTC 59.135 45.833 0.00 0.00 0.00 3.36
495 498 5.462530 TCCGACTCAAAATAAGTGACTCA 57.537 39.130 0.00 0.00 0.00 3.41
496 499 5.849510 TCCGACTCAAAATAAGTGACTCAA 58.150 37.500 0.00 0.00 0.00 3.02
497 500 6.464222 TCCGACTCAAAATAAGTGACTCAAT 58.536 36.000 0.00 0.00 0.00 2.57
498 501 6.934645 TCCGACTCAAAATAAGTGACTCAATT 59.065 34.615 0.00 0.00 0.00 2.32
499 502 7.444183 TCCGACTCAAAATAAGTGACTCAATTT 59.556 33.333 0.00 0.00 0.00 1.82
500 503 8.076178 CCGACTCAAAATAAGTGACTCAATTTT 58.924 33.333 10.89 10.89 33.07 1.82
511 514 6.890293 AGTGACTCAATTTTATACTCCCTCC 58.110 40.000 0.00 0.00 0.00 4.30
512 515 6.443849 AGTGACTCAATTTTATACTCCCTCCA 59.556 38.462 0.00 0.00 0.00 3.86
513 516 7.127955 AGTGACTCAATTTTATACTCCCTCCAT 59.872 37.037 0.00 0.00 0.00 3.41
514 517 7.775561 GTGACTCAATTTTATACTCCCTCCATT 59.224 37.037 0.00 0.00 0.00 3.16
515 518 7.993183 TGACTCAATTTTATACTCCCTCCATTC 59.007 37.037 0.00 0.00 0.00 2.67
516 519 7.290813 ACTCAATTTTATACTCCCTCCATTCC 58.709 38.462 0.00 0.00 0.00 3.01
517 520 7.091993 ACTCAATTTTATACTCCCTCCATTCCA 60.092 37.037 0.00 0.00 0.00 3.53
518 521 7.647827 TCAATTTTATACTCCCTCCATTCCAA 58.352 34.615 0.00 0.00 0.00 3.53
519 522 8.119246 TCAATTTTATACTCCCTCCATTCCAAA 58.881 33.333 0.00 0.00 0.00 3.28
520 523 8.757877 CAATTTTATACTCCCTCCATTCCAAAA 58.242 33.333 0.00 0.00 0.00 2.44
521 524 9.506042 AATTTTATACTCCCTCCATTCCAAAAT 57.494 29.630 0.00 0.00 0.00 1.82
526 529 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
527 530 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
528 531 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
529 532 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
530 533 4.821805 CCTCCATTCCAAAATATAGTGCGT 59.178 41.667 0.00 0.00 0.00 5.24
531 534 5.049405 CCTCCATTCCAAAATATAGTGCGTC 60.049 44.000 0.00 0.00 0.00 5.19
532 535 4.819630 TCCATTCCAAAATATAGTGCGTCC 59.180 41.667 0.00 0.00 0.00 4.79
533 536 4.319477 CCATTCCAAAATATAGTGCGTCCG 60.319 45.833 0.00 0.00 0.00 4.79
534 537 2.206750 TCCAAAATATAGTGCGTCCGC 58.793 47.619 4.42 4.42 42.35 5.54
535 538 1.070843 CCAAAATATAGTGCGTCCGCG 60.071 52.381 7.22 0.00 45.51 6.46
550 553 4.430765 GCGCTTCCCGAGGTCGAA 62.431 66.667 0.00 0.00 43.02 3.71
551 554 2.506438 CGCTTCCCGAGGTCGAAC 60.506 66.667 0.00 0.00 43.02 3.95
552 555 2.971452 GCTTCCCGAGGTCGAACT 59.029 61.111 0.34 0.34 43.02 3.01
553 556 1.292541 GCTTCCCGAGGTCGAACTT 59.707 57.895 3.47 0.00 43.02 2.66
554 557 0.320508 GCTTCCCGAGGTCGAACTTT 60.321 55.000 3.47 0.00 43.02 2.66
555 558 1.429463 CTTCCCGAGGTCGAACTTTG 58.571 55.000 3.47 0.00 43.02 2.77
556 559 1.000506 CTTCCCGAGGTCGAACTTTGA 59.999 52.381 3.47 0.00 43.02 2.69
557 560 0.316204 TCCCGAGGTCGAACTTTGAC 59.684 55.000 3.47 0.86 43.02 3.18
570 573 8.142348 GTCGAACTTTGACCATAAATTTAACG 57.858 34.615 1.21 0.00 0.00 3.18
571 574 8.011106 GTCGAACTTTGACCATAAATTTAACGA 58.989 33.333 1.21 0.00 0.00 3.85
572 575 8.723311 TCGAACTTTGACCATAAATTTAACGAT 58.277 29.630 1.21 0.00 0.00 3.73
573 576 9.337091 CGAACTTTGACCATAAATTTAACGATT 57.663 29.630 1.21 0.00 0.00 3.34
576 579 9.840427 ACTTTGACCATAAATTTAACGATTGAG 57.160 29.630 1.21 0.01 0.00 3.02
578 581 9.834628 TTTGACCATAAATTTAACGATTGAGAC 57.165 29.630 1.21 0.00 0.00 3.36
579 582 7.981142 TGACCATAAATTTAACGATTGAGACC 58.019 34.615 1.21 0.00 0.00 3.85
580 583 7.011828 ACCATAAATTTAACGATTGAGACCG 57.988 36.000 1.21 0.00 0.00 4.79
581 584 6.819649 ACCATAAATTTAACGATTGAGACCGA 59.180 34.615 1.21 0.00 0.00 4.69
582 585 7.123830 CCATAAATTTAACGATTGAGACCGAC 58.876 38.462 1.21 0.00 0.00 4.79
583 586 7.011109 CCATAAATTTAACGATTGAGACCGACT 59.989 37.037 1.21 0.00 0.00 4.18
584 587 5.779806 AATTTAACGATTGAGACCGACTG 57.220 39.130 0.00 0.00 0.00 3.51
585 588 2.273370 TAACGATTGAGACCGACTGC 57.727 50.000 0.00 0.00 0.00 4.40
586 589 0.732880 AACGATTGAGACCGACTGCG 60.733 55.000 0.00 0.00 37.24 5.18
597 600 2.975799 GACTGCGGCGGGTGAAAA 60.976 61.111 14.26 0.00 0.00 2.29
598 601 2.517402 ACTGCGGCGGGTGAAAAA 60.517 55.556 14.26 0.00 0.00 1.94
638 641 9.450807 AAACTTCTTTCAAATACGAATTCACTG 57.549 29.630 6.22 0.00 0.00 3.66
639 642 8.378172 ACTTCTTTCAAATACGAATTCACTGA 57.622 30.769 6.22 0.00 0.00 3.41
640 643 9.003658 ACTTCTTTCAAATACGAATTCACTGAT 57.996 29.630 6.22 0.00 0.00 2.90
653 656 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
654 657 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
655 658 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
656 659 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
657 660 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
658 661 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
659 662 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
660 663 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
661 664 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
662 665 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
663 666 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
664 667 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
676 679 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
677 680 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
678 681 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
679 682 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
680 683 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
681 684 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
682 685 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
683 686 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
684 687 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
685 688 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
686 689 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
687 690 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
688 691 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
689 692 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
690 693 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
691 694 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
692 695 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
693 696 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
694 697 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
695 698 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
696 699 9.553064 TGGTAGTTAAATTTACGGTCAAAGTTA 57.447 29.630 0.00 0.00 29.44 2.24
700 703 9.454585 AGTTAAATTTACGGTCAAAGTTAAAGC 57.545 29.630 11.14 4.21 38.74 3.51
701 704 9.235537 GTTAAATTTACGGTCAAAGTTAAAGCA 57.764 29.630 11.14 0.00 38.74 3.91
702 705 7.688478 AAATTTACGGTCAAAGTTAAAGCAC 57.312 32.000 0.00 0.00 0.00 4.40
703 706 4.455917 TTACGGTCAAAGTTAAAGCACG 57.544 40.909 0.00 0.00 0.00 5.34
704 707 1.600485 ACGGTCAAAGTTAAAGCACGG 59.400 47.619 0.00 0.00 0.00 4.94
705 708 1.868498 CGGTCAAAGTTAAAGCACGGA 59.132 47.619 0.00 0.00 0.00 4.69
706 709 2.096417 CGGTCAAAGTTAAAGCACGGAG 60.096 50.000 0.00 0.00 0.00 4.63
707 710 3.135994 GGTCAAAGTTAAAGCACGGAGA 58.864 45.455 0.00 0.00 0.00 3.71
708 711 3.751698 GGTCAAAGTTAAAGCACGGAGAT 59.248 43.478 0.00 0.00 0.00 2.75
709 712 4.933400 GGTCAAAGTTAAAGCACGGAGATA 59.067 41.667 0.00 0.00 0.00 1.98
710 713 5.063564 GGTCAAAGTTAAAGCACGGAGATAG 59.936 44.000 0.00 0.00 0.00 2.08
711 714 5.867716 GTCAAAGTTAAAGCACGGAGATAGA 59.132 40.000 0.00 0.00 0.00 1.98
712 715 6.035112 GTCAAAGTTAAAGCACGGAGATAGAG 59.965 42.308 0.00 0.00 0.00 2.43
713 716 4.657436 AGTTAAAGCACGGAGATAGAGG 57.343 45.455 0.00 0.00 0.00 3.69
714 717 4.279145 AGTTAAAGCACGGAGATAGAGGA 58.721 43.478 0.00 0.00 0.00 3.71
715 718 4.710375 AGTTAAAGCACGGAGATAGAGGAA 59.290 41.667 0.00 0.00 0.00 3.36
716 719 3.810310 AAAGCACGGAGATAGAGGAAG 57.190 47.619 0.00 0.00 0.00 3.46
717 720 1.036707 AGCACGGAGATAGAGGAAGC 58.963 55.000 0.00 0.00 0.00 3.86
718 721 0.747255 GCACGGAGATAGAGGAAGCA 59.253 55.000 0.00 0.00 0.00 3.91
719 722 1.537135 GCACGGAGATAGAGGAAGCAC 60.537 57.143 0.00 0.00 0.00 4.40
720 723 2.028130 CACGGAGATAGAGGAAGCACT 58.972 52.381 0.00 0.00 0.00 4.40
721 724 3.215151 CACGGAGATAGAGGAAGCACTA 58.785 50.000 0.00 0.00 0.00 2.74
722 725 3.003897 CACGGAGATAGAGGAAGCACTAC 59.996 52.174 0.00 0.00 0.00 2.73
723 726 3.215151 CGGAGATAGAGGAAGCACTACA 58.785 50.000 0.00 0.00 0.00 2.74
724 727 3.823873 CGGAGATAGAGGAAGCACTACAT 59.176 47.826 0.00 0.00 0.00 2.29
725 728 4.279671 CGGAGATAGAGGAAGCACTACATT 59.720 45.833 0.00 0.00 0.00 2.71
726 729 5.537188 GGAGATAGAGGAAGCACTACATTG 58.463 45.833 0.00 0.00 0.00 2.82
727 730 5.069781 GGAGATAGAGGAAGCACTACATTGT 59.930 44.000 0.00 0.00 0.00 2.71
728 731 5.911752 AGATAGAGGAAGCACTACATTGTG 58.088 41.667 0.00 0.00 40.62 3.33
729 732 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
730 733 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
731 734 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
732 735 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
733 736 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
734 737 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
735 738 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
739 742 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
740 743 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
741 744 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
742 745 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
743 746 3.054361 ACATTGTGGAATGGAGGGAGTAC 60.054 47.826 0.00 0.00 43.00 2.73
744 747 2.642171 TGTGGAATGGAGGGAGTACT 57.358 50.000 0.00 0.00 0.00 2.73
745 748 3.769189 TGTGGAATGGAGGGAGTACTA 57.231 47.619 0.00 0.00 0.00 1.82
746 749 4.069312 TGTGGAATGGAGGGAGTACTAA 57.931 45.455 0.00 0.00 0.00 2.24
747 750 3.773119 TGTGGAATGGAGGGAGTACTAAC 59.227 47.826 0.00 0.00 0.00 2.34
748 751 4.031611 GTGGAATGGAGGGAGTACTAACT 58.968 47.826 0.00 0.00 39.21 2.24
749 752 4.470304 GTGGAATGGAGGGAGTACTAACTT 59.530 45.833 0.00 0.00 35.56 2.66
750 753 5.045797 GTGGAATGGAGGGAGTACTAACTTT 60.046 44.000 0.00 0.00 35.56 2.66
751 754 6.155737 GTGGAATGGAGGGAGTACTAACTTTA 59.844 42.308 0.00 0.00 35.56 1.85
752 755 6.383147 TGGAATGGAGGGAGTACTAACTTTAG 59.617 42.308 0.00 0.00 35.56 1.85
753 756 6.383436 GGAATGGAGGGAGTACTAACTTTAGT 59.617 42.308 6.85 6.85 45.39 2.24
754 757 6.793505 ATGGAGGGAGTACTAACTTTAGTG 57.206 41.667 11.24 0.00 43.44 2.74
755 758 5.021458 TGGAGGGAGTACTAACTTTAGTGG 58.979 45.833 11.24 0.00 43.44 4.00
756 759 5.222400 TGGAGGGAGTACTAACTTTAGTGGA 60.222 44.000 11.24 0.00 43.44 4.02
757 760 5.360429 GGAGGGAGTACTAACTTTAGTGGAG 59.640 48.000 11.24 0.00 43.44 3.86
758 761 6.150034 AGGGAGTACTAACTTTAGTGGAGA 57.850 41.667 11.24 0.00 43.44 3.71
759 762 5.951148 AGGGAGTACTAACTTTAGTGGAGAC 59.049 44.000 11.24 2.60 43.44 3.36
760 763 5.163673 GGGAGTACTAACTTTAGTGGAGACG 60.164 48.000 11.24 0.00 43.44 4.18
761 764 5.163673 GGAGTACTAACTTTAGTGGAGACGG 60.164 48.000 11.24 0.00 43.44 4.79
762 765 5.564550 AGTACTAACTTTAGTGGAGACGGA 58.435 41.667 11.24 0.00 43.44 4.69
763 766 5.647225 AGTACTAACTTTAGTGGAGACGGAG 59.353 44.000 11.24 0.00 43.44 4.63
764 767 3.762823 ACTAACTTTAGTGGAGACGGAGG 59.237 47.826 0.70 0.00 42.13 4.30
765 768 1.558233 ACTTTAGTGGAGACGGAGGG 58.442 55.000 0.00 0.00 0.00 4.30
766 769 1.076677 ACTTTAGTGGAGACGGAGGGA 59.923 52.381 0.00 0.00 0.00 4.20
767 770 1.751924 CTTTAGTGGAGACGGAGGGAG 59.248 57.143 0.00 0.00 0.00 4.30
768 771 0.702902 TTAGTGGAGACGGAGGGAGT 59.297 55.000 0.00 0.00 0.00 3.85
769 772 1.588239 TAGTGGAGACGGAGGGAGTA 58.412 55.000 0.00 0.00 0.00 2.59
770 773 0.702902 AGTGGAGACGGAGGGAGTAA 59.297 55.000 0.00 0.00 0.00 2.24
771 774 1.076677 AGTGGAGACGGAGGGAGTAAA 59.923 52.381 0.00 0.00 0.00 2.01
772 775 1.897802 GTGGAGACGGAGGGAGTAAAA 59.102 52.381 0.00 0.00 0.00 1.52
773 776 2.500504 GTGGAGACGGAGGGAGTAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
774 777 3.055312 GTGGAGACGGAGGGAGTAAAATT 60.055 47.826 0.00 0.00 0.00 1.82
775 778 3.585732 TGGAGACGGAGGGAGTAAAATTT 59.414 43.478 0.00 0.00 0.00 1.82
776 779 4.778958 TGGAGACGGAGGGAGTAAAATTTA 59.221 41.667 0.00 0.00 0.00 1.40
777 780 5.427481 TGGAGACGGAGGGAGTAAAATTTAT 59.573 40.000 0.00 0.00 0.00 1.40
778 781 6.069847 TGGAGACGGAGGGAGTAAAATTTATT 60.070 38.462 0.00 0.00 0.00 1.40
779 782 6.482641 GGAGACGGAGGGAGTAAAATTTATTC 59.517 42.308 0.30 0.30 0.00 1.75
780 783 7.196637 AGACGGAGGGAGTAAAATTTATTCT 57.803 36.000 7.92 0.00 0.00 2.40
781 784 8.315220 AGACGGAGGGAGTAAAATTTATTCTA 57.685 34.615 7.92 0.00 0.00 2.10
874 883 2.835705 CGCCGTCTCCAGCTATCGT 61.836 63.158 0.00 0.00 0.00 3.73
879 888 1.537638 CGTCTCCAGCTATCGTGCTAT 59.462 52.381 0.00 0.00 41.98 2.97
880 889 2.666895 CGTCTCCAGCTATCGTGCTATG 60.667 54.545 0.00 0.00 41.98 2.23
881 890 1.889170 TCTCCAGCTATCGTGCTATGG 59.111 52.381 0.00 0.00 41.98 2.74
882 891 0.318441 TCCAGCTATCGTGCTATGGC 59.682 55.000 0.00 0.00 41.98 4.40
883 892 0.319728 CCAGCTATCGTGCTATGGCT 59.680 55.000 1.68 0.55 43.66 4.75
884 893 1.671261 CCAGCTATCGTGCTATGGCTC 60.671 57.143 1.68 0.00 41.24 4.70
885 894 0.605589 AGCTATCGTGCTATGGCTCC 59.394 55.000 1.68 0.00 39.22 4.70
886 895 0.390472 GCTATCGTGCTATGGCTCCC 60.390 60.000 1.68 0.00 39.59 4.30
887 896 0.109086 CTATCGTGCTATGGCTCCCG 60.109 60.000 1.68 2.39 39.59 5.14
888 897 1.532604 TATCGTGCTATGGCTCCCGG 61.533 60.000 1.68 0.00 39.59 5.73
889 898 3.536917 CGTGCTATGGCTCCCGGA 61.537 66.667 0.73 0.00 39.59 5.14
972 982 0.243907 CCCAGATACCACTATCCGCG 59.756 60.000 0.00 0.00 30.40 6.46
1149 1165 1.115930 ACCACCTGCTGTTCTCGTCT 61.116 55.000 0.00 0.00 0.00 4.18
1331 1347 1.874019 CCGACAGCGACGAAGATGG 60.874 63.158 0.00 0.00 40.82 3.51
1500 1516 2.360852 TCCGTGTCCCTCTCGACC 60.361 66.667 0.00 0.00 35.42 4.79
1572 1588 1.820481 CTCGTCGACCTCCTCCTCC 60.820 68.421 10.58 0.00 0.00 4.30
2058 2074 1.684049 CCTCAGCCCCGTCTTCTCT 60.684 63.158 0.00 0.00 0.00 3.10
2236 2256 4.262045 GTCTTTTGTAAGTTGTTGCGTGTG 59.738 41.667 0.00 0.00 32.98 3.82
2237 2257 3.833545 TTTGTAAGTTGTTGCGTGTGT 57.166 38.095 0.00 0.00 0.00 3.72
2238 2258 2.815657 TGTAAGTTGTTGCGTGTGTG 57.184 45.000 0.00 0.00 0.00 3.82
2239 2259 2.077627 TGTAAGTTGTTGCGTGTGTGT 58.922 42.857 0.00 0.00 0.00 3.72
2240 2260 3.259902 TGTAAGTTGTTGCGTGTGTGTA 58.740 40.909 0.00 0.00 0.00 2.90
2241 2261 3.872182 TGTAAGTTGTTGCGTGTGTGTAT 59.128 39.130 0.00 0.00 0.00 2.29
2242 2262 5.048507 TGTAAGTTGTTGCGTGTGTGTATA 58.951 37.500 0.00 0.00 0.00 1.47
2243 2263 4.725556 AAGTTGTTGCGTGTGTGTATAG 57.274 40.909 0.00 0.00 0.00 1.31
2246 2272 3.653539 TGTTGCGTGTGTGTATAGAGT 57.346 42.857 0.00 0.00 0.00 3.24
2266 2292 2.548057 GTCAGTGAGCGTGAAAAATCCA 59.452 45.455 0.00 0.00 0.00 3.41
2277 2304 4.436523 CGTGAAAAATCCACAAGTTCGTTC 59.563 41.667 0.00 0.00 34.36 3.95
2284 2311 1.578583 CACAAGTTCGTTCGGAGGTT 58.421 50.000 0.00 0.00 0.00 3.50
2290 2323 1.259770 GTTCGTTCGGAGGTTGTTGTC 59.740 52.381 0.00 0.00 0.00 3.18
2322 2355 1.194781 AACTCGTCCATCAGCAGGGT 61.195 55.000 0.00 0.00 0.00 4.34
2324 2357 2.124983 CGTCCATCAGCAGGGTGG 60.125 66.667 1.40 1.40 0.00 4.61
2347 2380 2.553079 TGGATAAATTTGGCGCGAAC 57.447 45.000 12.10 1.21 0.00 3.95
2479 2819 1.322538 CCCCTGGCTATGTTTGCACC 61.323 60.000 0.00 0.00 0.00 5.01
2481 2821 1.064758 CCCTGGCTATGTTTGCACCTA 60.065 52.381 0.00 0.00 0.00 3.08
2482 2822 2.620367 CCCTGGCTATGTTTGCACCTAA 60.620 50.000 0.00 0.00 0.00 2.69
2483 2823 2.423538 CCTGGCTATGTTTGCACCTAAC 59.576 50.000 0.00 0.00 0.00 2.34
2484 2824 3.081061 CTGGCTATGTTTGCACCTAACA 58.919 45.455 4.98 4.98 39.58 2.41
2485 2825 3.081061 TGGCTATGTTTGCACCTAACAG 58.919 45.455 8.32 0.00 38.74 3.16
2486 2826 3.244735 TGGCTATGTTTGCACCTAACAGA 60.245 43.478 8.32 3.21 38.74 3.41
2487 2827 3.127030 GGCTATGTTTGCACCTAACAGAC 59.873 47.826 8.32 1.17 38.74 3.51
2490 2830 5.390991 GCTATGTTTGCACCTAACAGACTTC 60.391 44.000 8.32 0.00 38.74 3.01
2491 2831 3.879998 TGTTTGCACCTAACAGACTTCA 58.120 40.909 0.00 0.00 32.15 3.02
2492 2832 4.460263 TGTTTGCACCTAACAGACTTCAT 58.540 39.130 0.00 0.00 32.15 2.57
2493 2833 4.515191 TGTTTGCACCTAACAGACTTCATC 59.485 41.667 0.00 0.00 32.15 2.92
2529 2897 2.039418 ACGAGCATATCCAGCTGGTAA 58.961 47.619 31.58 20.85 46.88 2.85
2581 2950 3.875727 CTCTGACCCAGCATATGACTTTG 59.124 47.826 6.97 0.00 0.00 2.77
2582 2951 3.264193 TCTGACCCAGCATATGACTTTGT 59.736 43.478 6.97 2.98 0.00 2.83
2621 2990 1.446618 CGCCAGATTTGCTTTGGGC 60.447 57.895 0.00 0.00 42.22 5.36
2622 2991 1.446618 GCCAGATTTGCTTTGGGCG 60.447 57.895 0.00 0.00 45.43 6.13
2623 2992 1.876497 GCCAGATTTGCTTTGGGCGA 61.876 55.000 0.00 0.00 45.43 5.54
2624 2993 0.171903 CCAGATTTGCTTTGGGCGAG 59.828 55.000 0.00 0.00 45.43 5.03
2710 3079 3.532542 CCCTCTTTTCCGAATCAGTACC 58.467 50.000 0.00 0.00 0.00 3.34
2723 3092 7.662258 TCCGAATCAGTACCAAACAAAAAGATA 59.338 33.333 0.00 0.00 0.00 1.98
2853 3243 3.741830 TTGCCGTGGTCGACAAGCA 62.742 57.895 18.91 16.31 38.45 3.91
2873 4449 1.533753 ATGGCTGGTTGTGGTTGGG 60.534 57.895 0.00 0.00 0.00 4.12
2895 4471 1.202348 CGGAGTGGATCAGTAGCAGTG 60.202 57.143 0.00 0.00 0.00 3.66
2912 4488 0.822164 GTGGGCATGTAGGAGTACGT 59.178 55.000 0.00 0.00 30.95 3.57
2920 6181 1.915489 TGTAGGAGTACGTACCCCTGA 59.085 52.381 32.31 19.04 35.04 3.86
2934 6195 1.174712 CCCTGAGTGGTGTTTGGCAG 61.175 60.000 0.00 0.00 0.00 4.85
2945 6206 2.824880 TTTGGCAGGGCGTACTGGT 61.825 57.895 9.88 0.00 38.90 4.00
2966 6227 1.402107 GGTAGGGCCGTCCGGAAATA 61.402 60.000 5.23 0.00 41.52 1.40
2967 6228 0.465287 GTAGGGCCGTCCGGAAATAA 59.535 55.000 5.23 0.00 41.52 1.40
2969 6230 0.549469 AGGGCCGTCCGGAAATAAAT 59.451 50.000 5.23 0.00 41.52 1.40
3058 6320 4.253257 GCCGAGTAGCCTCCGTCG 62.253 72.222 0.00 0.00 33.93 5.12
3059 6321 2.513204 CCGAGTAGCCTCCGTCGA 60.513 66.667 0.00 0.00 34.28 4.20
3060 6322 2.708255 CGAGTAGCCTCCGTCGAC 59.292 66.667 5.18 5.18 34.28 4.20
3061 6323 2.821688 CGAGTAGCCTCCGTCGACC 61.822 68.421 10.58 0.00 34.28 4.79
3062 6324 1.451747 GAGTAGCCTCCGTCGACCT 60.452 63.158 10.58 3.11 0.00 3.85
3063 6325 1.438562 GAGTAGCCTCCGTCGACCTC 61.439 65.000 10.58 4.24 0.00 3.85
3064 6326 2.124403 TAGCCTCCGTCGACCTCC 60.124 66.667 10.58 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.601398 ATGCGCGGCGAGATTCATG 61.601 57.895 28.54 0.00 0.00 3.07
1 2 2.280389 ATGCGCGGCGAGATTCAT 60.280 55.556 28.54 16.20 0.00 2.57
2 3 3.264159 CATGCGCGGCGAGATTCA 61.264 61.111 28.54 14.46 0.00 2.57
3 4 4.656558 GCATGCGCGGCGAGATTC 62.657 66.667 28.54 8.39 0.00 2.52
12 13 2.352001 GCAAGATCAGCATGCGCG 60.352 61.111 13.01 0.00 45.49 6.86
30 31 2.079925 CTTGCTAGGGTTGCTCTGTTC 58.920 52.381 0.00 0.00 0.00 3.18
58 59 6.554982 TCCACTATACATAAGCATGAGGTTCT 59.445 38.462 0.00 0.00 36.70 3.01
61 62 5.841237 ACTCCACTATACATAAGCATGAGGT 59.159 40.000 0.00 0.00 35.96 3.85
62 63 6.352016 ACTCCACTATACATAAGCATGAGG 57.648 41.667 0.00 0.00 35.96 3.86
66 67 9.765795 GAAAACTACTCCACTATACATAAGCAT 57.234 33.333 0.00 0.00 0.00 3.79
92 93 9.485206 AATGATTGTTTTGATGGAGAGAAAAAG 57.515 29.630 0.00 0.00 0.00 2.27
163 165 5.053811 TGCTGAATGTTAACGTTTCTCAGA 58.946 37.500 23.27 11.35 0.00 3.27
165 167 5.743026 TTGCTGAATGTTAACGTTTCTCA 57.257 34.783 14.11 7.39 0.00 3.27
194 196 2.908626 GCATCCACAAAACGATCGAAAC 59.091 45.455 24.34 0.00 0.00 2.78
198 200 0.801872 TGGCATCCACAAAACGATCG 59.198 50.000 14.88 14.88 0.00 3.69
263 265 3.316588 TGCAAGTACGGCAATTTTCTGAA 59.683 39.130 12.03 0.00 38.54 3.02
274 276 5.494863 CAAATTTAGTTTGCAAGTACGGC 57.505 39.130 0.00 5.71 40.62 5.68
314 316 9.894783 CAATTTGACATTTTTCATGGCAATTTA 57.105 25.926 3.96 0.00 45.41 1.40
336 338 6.924111 ACGTCAAATTCTTAGGAATGCAATT 58.076 32.000 0.16 0.00 40.86 2.32
433 436 8.732746 TCTTGCTATGGGTCTAGTTTAATTTC 57.267 34.615 0.00 0.00 0.00 2.17
451 454 7.672660 TCGGAGGGAGTATATAATTTCTTGCTA 59.327 37.037 0.00 0.00 0.00 3.49
462 465 8.945195 TTATTTTGAGTCGGAGGGAGTATATA 57.055 34.615 0.00 0.00 0.00 0.86
466 469 5.021458 ACTTATTTTGAGTCGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
468 471 4.081642 TCACTTATTTTGAGTCGGAGGGAG 60.082 45.833 0.00 0.00 0.00 4.30
469 472 3.835978 TCACTTATTTTGAGTCGGAGGGA 59.164 43.478 0.00 0.00 0.00 4.20
470 473 3.933332 GTCACTTATTTTGAGTCGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
471 474 4.822026 AGTCACTTATTTTGAGTCGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
472 475 5.470368 TGAGTCACTTATTTTGAGTCGGAG 58.530 41.667 0.00 0.00 43.66 4.63
474 477 6.727824 ATTGAGTCACTTATTTTGAGTCGG 57.272 37.500 0.00 0.00 43.66 4.79
486 489 7.037586 TGGAGGGAGTATAAAATTGAGTCACTT 60.038 37.037 0.00 0.00 0.00 3.16
487 490 6.443849 TGGAGGGAGTATAAAATTGAGTCACT 59.556 38.462 0.00 0.00 0.00 3.41
488 491 6.650120 TGGAGGGAGTATAAAATTGAGTCAC 58.350 40.000 0.00 0.00 0.00 3.67
489 492 6.884472 TGGAGGGAGTATAAAATTGAGTCA 57.116 37.500 0.00 0.00 0.00 3.41
490 493 7.445707 GGAATGGAGGGAGTATAAAATTGAGTC 59.554 40.741 0.00 0.00 0.00 3.36
491 494 7.091993 TGGAATGGAGGGAGTATAAAATTGAGT 60.092 37.037 0.00 0.00 0.00 3.41
492 495 7.290061 TGGAATGGAGGGAGTATAAAATTGAG 58.710 38.462 0.00 0.00 0.00 3.02
493 496 7.219601 TGGAATGGAGGGAGTATAAAATTGA 57.780 36.000 0.00 0.00 0.00 2.57
494 497 7.896383 TTGGAATGGAGGGAGTATAAAATTG 57.104 36.000 0.00 0.00 0.00 2.32
495 498 8.909423 TTTTGGAATGGAGGGAGTATAAAATT 57.091 30.769 0.00 0.00 0.00 1.82
500 503 9.629649 ACTATATTTTGGAATGGAGGGAGTATA 57.370 33.333 0.00 0.00 0.00 1.47
501 504 8.386264 CACTATATTTTGGAATGGAGGGAGTAT 58.614 37.037 0.00 0.00 0.00 2.12
502 505 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
503 506 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
504 507 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
505 508 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
506 509 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
507 510 4.821805 ACGCACTATATTTTGGAATGGAGG 59.178 41.667 0.00 0.00 0.00 4.30
508 511 5.049405 GGACGCACTATATTTTGGAATGGAG 60.049 44.000 0.00 0.00 0.00 3.86
509 512 4.819630 GGACGCACTATATTTTGGAATGGA 59.180 41.667 0.00 0.00 0.00 3.41
510 513 4.319477 CGGACGCACTATATTTTGGAATGG 60.319 45.833 0.00 0.00 0.00 3.16
511 514 4.772434 CGGACGCACTATATTTTGGAATG 58.228 43.478 0.00 0.00 0.00 2.67
512 515 3.250040 GCGGACGCACTATATTTTGGAAT 59.750 43.478 12.31 0.00 41.49 3.01
513 516 2.610374 GCGGACGCACTATATTTTGGAA 59.390 45.455 12.31 0.00 41.49 3.53
514 517 2.206750 GCGGACGCACTATATTTTGGA 58.793 47.619 12.31 0.00 41.49 3.53
515 518 1.070843 CGCGGACGCACTATATTTTGG 60.071 52.381 17.35 0.00 42.06 3.28
516 519 2.279250 CGCGGACGCACTATATTTTG 57.721 50.000 17.35 0.00 42.06 2.44
533 536 4.430765 TTCGACCTCGGGAAGCGC 62.431 66.667 0.00 0.00 40.29 5.92
534 537 2.488087 AAGTTCGACCTCGGGAAGCG 62.488 60.000 0.00 0.00 40.29 4.68
535 538 0.320508 AAAGTTCGACCTCGGGAAGC 60.321 55.000 0.00 0.00 40.29 3.86
536 539 1.000506 TCAAAGTTCGACCTCGGGAAG 59.999 52.381 0.00 0.00 40.29 3.46
537 540 1.042229 TCAAAGTTCGACCTCGGGAA 58.958 50.000 0.00 0.00 40.29 3.97
538 541 0.316204 GTCAAAGTTCGACCTCGGGA 59.684 55.000 0.00 0.00 40.29 5.14
539 542 2.823628 GTCAAAGTTCGACCTCGGG 58.176 57.895 0.00 0.00 40.29 5.14
545 548 8.011106 TCGTTAAATTTATGGTCAAAGTTCGAC 58.989 33.333 0.00 0.00 29.44 4.20
546 549 8.085720 TCGTTAAATTTATGGTCAAAGTTCGA 57.914 30.769 0.00 0.00 29.44 3.71
547 550 8.889849 ATCGTTAAATTTATGGTCAAAGTTCG 57.110 30.769 0.00 0.00 29.44 3.95
550 553 9.840427 CTCAATCGTTAAATTTATGGTCAAAGT 57.160 29.630 0.00 0.00 0.00 2.66
552 555 9.834628 GTCTCAATCGTTAAATTTATGGTCAAA 57.165 29.630 0.00 0.00 0.00 2.69
553 556 8.455682 GGTCTCAATCGTTAAATTTATGGTCAA 58.544 33.333 0.00 0.00 0.00 3.18
554 557 7.201574 CGGTCTCAATCGTTAAATTTATGGTCA 60.202 37.037 0.00 0.00 0.00 4.02
555 558 7.010738 TCGGTCTCAATCGTTAAATTTATGGTC 59.989 37.037 0.00 0.00 0.00 4.02
556 559 6.819649 TCGGTCTCAATCGTTAAATTTATGGT 59.180 34.615 0.00 0.00 0.00 3.55
557 560 7.011109 AGTCGGTCTCAATCGTTAAATTTATGG 59.989 37.037 0.00 0.00 0.00 2.74
558 561 7.846107 CAGTCGGTCTCAATCGTTAAATTTATG 59.154 37.037 0.00 0.00 0.00 1.90
559 562 7.465513 GCAGTCGGTCTCAATCGTTAAATTTAT 60.466 37.037 0.00 0.00 0.00 1.40
560 563 6.183360 GCAGTCGGTCTCAATCGTTAAATTTA 60.183 38.462 0.00 0.00 0.00 1.40
561 564 5.390567 GCAGTCGGTCTCAATCGTTAAATTT 60.391 40.000 0.00 0.00 0.00 1.82
562 565 4.092968 GCAGTCGGTCTCAATCGTTAAATT 59.907 41.667 0.00 0.00 0.00 1.82
563 566 3.617263 GCAGTCGGTCTCAATCGTTAAAT 59.383 43.478 0.00 0.00 0.00 1.40
564 567 2.991190 GCAGTCGGTCTCAATCGTTAAA 59.009 45.455 0.00 0.00 0.00 1.52
565 568 2.602878 GCAGTCGGTCTCAATCGTTAA 58.397 47.619 0.00 0.00 0.00 2.01
566 569 1.466866 CGCAGTCGGTCTCAATCGTTA 60.467 52.381 0.00 0.00 0.00 3.18
567 570 0.732880 CGCAGTCGGTCTCAATCGTT 60.733 55.000 0.00 0.00 0.00 3.85
568 571 1.154016 CGCAGTCGGTCTCAATCGT 60.154 57.895 0.00 0.00 0.00 3.73
569 572 3.680525 CGCAGTCGGTCTCAATCG 58.319 61.111 0.00 0.00 0.00 3.34
580 583 2.548295 TTTTTCACCCGCCGCAGTC 61.548 57.895 0.00 0.00 0.00 3.51
581 584 2.517402 TTTTTCACCCGCCGCAGT 60.517 55.556 0.00 0.00 0.00 4.40
612 615 9.450807 CAGTGAATTCGTATTTGAAAGAAGTTT 57.549 29.630 0.04 0.00 0.00 2.66
613 616 8.836413 TCAGTGAATTCGTATTTGAAAGAAGTT 58.164 29.630 0.04 0.00 0.00 2.66
614 617 8.378172 TCAGTGAATTCGTATTTGAAAGAAGT 57.622 30.769 0.04 0.00 0.00 3.01
627 630 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
628 631 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
629 632 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
630 633 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
631 634 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
632 635 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
633 636 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
658 661 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
659 662 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
660 663 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
661 664 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
662 665 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
663 666 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
664 667 5.639082 ACCGTAAATTTAACTACCAAGACCG 59.361 40.000 0.00 0.00 0.00 4.79
665 668 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
666 669 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
667 670 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
668 671 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
669 672 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
670 673 8.449251 AACTTTGACCGTAAATTTAACTACCA 57.551 30.769 0.00 0.00 0.00 3.25
674 677 9.454585 GCTTTAACTTTGACCGTAAATTTAACT 57.545 29.630 0.00 0.00 29.85 2.24
675 678 9.235537 TGCTTTAACTTTGACCGTAAATTTAAC 57.764 29.630 0.00 0.00 29.85 2.01
676 679 9.235537 GTGCTTTAACTTTGACCGTAAATTTAA 57.764 29.630 0.00 0.00 0.00 1.52
677 680 7.587028 CGTGCTTTAACTTTGACCGTAAATTTA 59.413 33.333 0.00 0.00 0.00 1.40
678 681 6.415573 CGTGCTTTAACTTTGACCGTAAATTT 59.584 34.615 0.00 0.00 0.00 1.82
679 682 5.910723 CGTGCTTTAACTTTGACCGTAAATT 59.089 36.000 0.00 0.00 0.00 1.82
680 683 5.445845 CGTGCTTTAACTTTGACCGTAAAT 58.554 37.500 0.00 0.00 0.00 1.40
681 684 4.260702 CCGTGCTTTAACTTTGACCGTAAA 60.261 41.667 0.00 0.00 0.00 2.01
682 685 3.248125 CCGTGCTTTAACTTTGACCGTAA 59.752 43.478 0.00 0.00 0.00 3.18
683 686 2.801679 CCGTGCTTTAACTTTGACCGTA 59.198 45.455 0.00 0.00 0.00 4.02
684 687 1.600485 CCGTGCTTTAACTTTGACCGT 59.400 47.619 0.00 0.00 0.00 4.83
685 688 1.868498 TCCGTGCTTTAACTTTGACCG 59.132 47.619 0.00 0.00 0.00 4.79
686 689 3.135994 TCTCCGTGCTTTAACTTTGACC 58.864 45.455 0.00 0.00 0.00 4.02
687 690 5.867716 TCTATCTCCGTGCTTTAACTTTGAC 59.132 40.000 0.00 0.00 0.00 3.18
688 691 6.032956 TCTATCTCCGTGCTTTAACTTTGA 57.967 37.500 0.00 0.00 0.00 2.69
689 692 5.292101 CCTCTATCTCCGTGCTTTAACTTTG 59.708 44.000 0.00 0.00 0.00 2.77
690 693 5.187186 TCCTCTATCTCCGTGCTTTAACTTT 59.813 40.000 0.00 0.00 0.00 2.66
691 694 4.710375 TCCTCTATCTCCGTGCTTTAACTT 59.290 41.667 0.00 0.00 0.00 2.66
692 695 4.279145 TCCTCTATCTCCGTGCTTTAACT 58.721 43.478 0.00 0.00 0.00 2.24
693 696 4.650754 TCCTCTATCTCCGTGCTTTAAC 57.349 45.455 0.00 0.00 0.00 2.01
694 697 4.441634 GCTTCCTCTATCTCCGTGCTTTAA 60.442 45.833 0.00 0.00 0.00 1.52
695 698 3.068307 GCTTCCTCTATCTCCGTGCTTTA 59.932 47.826 0.00 0.00 0.00 1.85
696 699 2.159028 GCTTCCTCTATCTCCGTGCTTT 60.159 50.000 0.00 0.00 0.00 3.51
697 700 1.410882 GCTTCCTCTATCTCCGTGCTT 59.589 52.381 0.00 0.00 0.00 3.91
698 701 1.036707 GCTTCCTCTATCTCCGTGCT 58.963 55.000 0.00 0.00 0.00 4.40
699 702 0.747255 TGCTTCCTCTATCTCCGTGC 59.253 55.000 0.00 0.00 0.00 5.34
700 703 2.028130 AGTGCTTCCTCTATCTCCGTG 58.972 52.381 0.00 0.00 0.00 4.94
701 704 2.445682 AGTGCTTCCTCTATCTCCGT 57.554 50.000 0.00 0.00 0.00 4.69
702 705 3.215151 TGTAGTGCTTCCTCTATCTCCG 58.785 50.000 0.00 0.00 0.00 4.63
703 706 5.069781 ACAATGTAGTGCTTCCTCTATCTCC 59.930 44.000 0.00 0.00 0.00 3.71
704 707 5.982516 CACAATGTAGTGCTTCCTCTATCTC 59.017 44.000 0.00 0.00 32.04 2.75
705 708 5.163364 CCACAATGTAGTGCTTCCTCTATCT 60.163 44.000 0.00 0.00 38.18 1.98
706 709 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
707 710 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
708 711 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
709 712 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
710 713 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
711 714 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
712 715 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
713 716 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
714 717 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
715 718 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
716 719 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
717 720 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
718 721 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
719 722 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
720 723 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
721 724 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
722 725 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
723 726 3.464828 AGTACTCCCTCCATTCCACAAT 58.535 45.455 0.00 0.00 0.00 2.71
724 727 2.915869 AGTACTCCCTCCATTCCACAA 58.084 47.619 0.00 0.00 0.00 3.33
725 728 2.642171 AGTACTCCCTCCATTCCACA 57.358 50.000 0.00 0.00 0.00 4.17
726 729 4.031611 AGTTAGTACTCCCTCCATTCCAC 58.968 47.826 0.00 0.00 0.00 4.02
727 730 4.348020 AGTTAGTACTCCCTCCATTCCA 57.652 45.455 0.00 0.00 0.00 3.53
728 731 5.695424 AAAGTTAGTACTCCCTCCATTCC 57.305 43.478 0.00 0.00 31.99 3.01
729 732 7.266400 CACTAAAGTTAGTACTCCCTCCATTC 58.734 42.308 0.00 0.00 41.82 2.67
730 733 6.156429 CCACTAAAGTTAGTACTCCCTCCATT 59.844 42.308 0.00 0.00 41.82 3.16
731 734 5.661759 CCACTAAAGTTAGTACTCCCTCCAT 59.338 44.000 0.00 0.00 41.82 3.41
732 735 5.021458 CCACTAAAGTTAGTACTCCCTCCA 58.979 45.833 0.00 0.00 41.82 3.86
733 736 5.267587 TCCACTAAAGTTAGTACTCCCTCC 58.732 45.833 0.00 0.00 41.82 4.30
734 737 6.095300 GTCTCCACTAAAGTTAGTACTCCCTC 59.905 46.154 0.00 0.00 41.82 4.30
735 738 5.951148 GTCTCCACTAAAGTTAGTACTCCCT 59.049 44.000 0.00 0.00 41.82 4.20
736 739 5.163673 CGTCTCCACTAAAGTTAGTACTCCC 60.164 48.000 0.00 0.00 41.82 4.30
737 740 5.163673 CCGTCTCCACTAAAGTTAGTACTCC 60.164 48.000 0.00 0.00 41.82 3.85
738 741 5.645497 TCCGTCTCCACTAAAGTTAGTACTC 59.355 44.000 0.00 0.00 41.82 2.59
739 742 5.564550 TCCGTCTCCACTAAAGTTAGTACT 58.435 41.667 0.00 0.00 41.82 2.73
740 743 5.163673 CCTCCGTCTCCACTAAAGTTAGTAC 60.164 48.000 3.46 0.00 41.82 2.73
741 744 4.946157 CCTCCGTCTCCACTAAAGTTAGTA 59.054 45.833 3.46 0.00 41.82 1.82
742 745 3.762823 CCTCCGTCTCCACTAAAGTTAGT 59.237 47.826 0.00 0.00 44.42 2.24
743 746 3.130693 CCCTCCGTCTCCACTAAAGTTAG 59.869 52.174 0.00 0.00 36.82 2.34
744 747 3.094572 CCCTCCGTCTCCACTAAAGTTA 58.905 50.000 0.00 0.00 0.00 2.24
745 748 1.900486 CCCTCCGTCTCCACTAAAGTT 59.100 52.381 0.00 0.00 0.00 2.66
746 749 1.076677 TCCCTCCGTCTCCACTAAAGT 59.923 52.381 0.00 0.00 0.00 2.66
747 750 1.751924 CTCCCTCCGTCTCCACTAAAG 59.248 57.143 0.00 0.00 0.00 1.85
748 751 1.076677 ACTCCCTCCGTCTCCACTAAA 59.923 52.381 0.00 0.00 0.00 1.85
749 752 0.702902 ACTCCCTCCGTCTCCACTAA 59.297 55.000 0.00 0.00 0.00 2.24
750 753 1.588239 TACTCCCTCCGTCTCCACTA 58.412 55.000 0.00 0.00 0.00 2.74
751 754 0.702902 TTACTCCCTCCGTCTCCACT 59.297 55.000 0.00 0.00 0.00 4.00
752 755 1.553706 TTTACTCCCTCCGTCTCCAC 58.446 55.000 0.00 0.00 0.00 4.02
753 756 2.314071 TTTTACTCCCTCCGTCTCCA 57.686 50.000 0.00 0.00 0.00 3.86
754 757 3.908643 AATTTTACTCCCTCCGTCTCC 57.091 47.619 0.00 0.00 0.00 3.71
755 758 7.273712 AGAATAAATTTTACTCCCTCCGTCTC 58.726 38.462 0.00 0.00 0.00 3.36
756 759 7.196637 AGAATAAATTTTACTCCCTCCGTCT 57.803 36.000 0.00 0.00 0.00 4.18
757 760 8.953368 TTAGAATAAATTTTACTCCCTCCGTC 57.047 34.615 0.00 0.00 0.00 4.79
758 761 9.743581 TTTTAGAATAAATTTTACTCCCTCCGT 57.256 29.630 0.00 0.00 0.00 4.69
775 778 9.820229 GTTCGTGACACAAATGATTTTAGAATA 57.180 29.630 6.37 0.00 0.00 1.75
776 779 7.533900 CGTTCGTGACACAAATGATTTTAGAAT 59.466 33.333 6.37 0.00 0.00 2.40
777 780 6.848800 CGTTCGTGACACAAATGATTTTAGAA 59.151 34.615 6.37 0.00 0.00 2.10
778 781 6.359545 CGTTCGTGACACAAATGATTTTAGA 58.640 36.000 6.37 0.00 0.00 2.10
779 782 5.563751 CCGTTCGTGACACAAATGATTTTAG 59.436 40.000 6.37 0.00 0.00 1.85
780 783 5.444983 CCGTTCGTGACACAAATGATTTTA 58.555 37.500 6.37 0.00 0.00 1.52
781 784 4.286910 CCGTTCGTGACACAAATGATTTT 58.713 39.130 6.37 0.00 0.00 1.82
874 883 3.536917 CGTCCGGGAGCCATAGCA 61.537 66.667 0.00 0.00 43.56 3.49
883 892 0.827089 TGTTAACTGTCCGTCCGGGA 60.827 55.000 0.00 0.00 44.68 5.14
884 893 0.389426 CTGTTAACTGTCCGTCCGGG 60.389 60.000 0.00 0.00 35.59 5.73
885 894 1.012486 GCTGTTAACTGTCCGTCCGG 61.012 60.000 13.27 0.00 0.00 5.14
886 895 1.342082 CGCTGTTAACTGTCCGTCCG 61.342 60.000 13.27 4.42 0.00 4.79
887 896 1.623973 GCGCTGTTAACTGTCCGTCC 61.624 60.000 13.27 0.00 0.00 4.79
888 897 1.779683 GCGCTGTTAACTGTCCGTC 59.220 57.895 13.27 3.80 0.00 4.79
889 898 2.019951 CGCGCTGTTAACTGTCCGT 61.020 57.895 5.56 0.00 0.00 4.69
972 982 4.413969 GTCCTAGTAGTTCGCTTTGAGTC 58.586 47.826 0.00 0.00 0.00 3.36
1191 1207 3.109612 CTCCGCGTCACCTAGTCCG 62.110 68.421 4.92 0.00 0.00 4.79
2058 2074 4.706035 TGGAGTGCTTTTACTTTTACCGA 58.294 39.130 0.00 0.00 0.00 4.69
2185 2205 7.988904 ACTCGCATAGTATTACAGAAAAGAC 57.011 36.000 0.00 0.00 36.36 3.01
2198 2218 9.297586 CTTACAAAAGACAATACTCGCATAGTA 57.702 33.333 0.00 0.00 38.79 1.82
2199 2219 7.817962 ACTTACAAAAGACAATACTCGCATAGT 59.182 33.333 0.00 0.00 38.05 2.12
2200 2220 8.186178 ACTTACAAAAGACAATACTCGCATAG 57.814 34.615 0.00 0.00 36.50 2.23
2236 2256 3.374367 TCACGCTCACTGACTCTATACAC 59.626 47.826 0.00 0.00 0.00 2.90
2237 2257 3.606687 TCACGCTCACTGACTCTATACA 58.393 45.455 0.00 0.00 0.00 2.29
2238 2258 4.617808 TTCACGCTCACTGACTCTATAC 57.382 45.455 0.00 0.00 0.00 1.47
2239 2259 5.638596 TTTTCACGCTCACTGACTCTATA 57.361 39.130 0.00 0.00 0.00 1.31
2240 2260 4.521130 TTTTCACGCTCACTGACTCTAT 57.479 40.909 0.00 0.00 0.00 1.98
2241 2261 4.316205 TTTTTCACGCTCACTGACTCTA 57.684 40.909 0.00 0.00 0.00 2.43
2242 2262 2.890808 TTTTCACGCTCACTGACTCT 57.109 45.000 0.00 0.00 0.00 3.24
2243 2263 3.120511 GGATTTTTCACGCTCACTGACTC 60.121 47.826 0.00 0.00 0.00 3.36
2246 2272 2.548057 GTGGATTTTTCACGCTCACTGA 59.452 45.455 0.00 0.00 0.00 3.41
2266 2292 1.134610 ACAACCTCCGAACGAACTTGT 60.135 47.619 0.00 0.00 0.00 3.16
2277 2304 2.135933 GACTTCTGACAACAACCTCCG 58.864 52.381 0.00 0.00 0.00 4.63
2284 2311 4.769688 AGTTGATGTGACTTCTGACAACA 58.230 39.130 0.00 0.00 38.62 3.33
2290 2323 2.989840 GGACGAGTTGATGTGACTTCTG 59.010 50.000 0.00 0.00 0.00 3.02
2322 2355 2.165437 GCGCCAAATTTATCCAACTCCA 59.835 45.455 0.00 0.00 0.00 3.86
2324 2357 2.096819 TCGCGCCAAATTTATCCAACTC 59.903 45.455 0.00 0.00 0.00 3.01
2360 2396 6.198966 GGCACACAAAAATAGCATAATGTAGC 59.801 38.462 0.00 0.00 0.00 3.58
2479 2819 6.438259 TTCGGTCTAGATGAAGTCTGTTAG 57.562 41.667 0.00 0.00 37.83 2.34
2481 2821 5.471257 GTTTCGGTCTAGATGAAGTCTGTT 58.529 41.667 0.00 0.00 37.83 3.16
2482 2822 4.082136 GGTTTCGGTCTAGATGAAGTCTGT 60.082 45.833 0.00 0.00 37.83 3.41
2483 2823 4.425520 GGTTTCGGTCTAGATGAAGTCTG 58.574 47.826 0.00 0.00 37.83 3.51
2484 2824 3.128938 CGGTTTCGGTCTAGATGAAGTCT 59.871 47.826 0.00 0.00 41.11 3.24
2485 2825 3.119566 ACGGTTTCGGTCTAGATGAAGTC 60.120 47.826 0.00 2.00 41.39 3.01
2486 2826 2.824341 ACGGTTTCGGTCTAGATGAAGT 59.176 45.455 0.00 0.00 41.39 3.01
2487 2827 3.119602 TCACGGTTTCGGTCTAGATGAAG 60.120 47.826 0.00 0.00 41.39 3.02
2490 2830 2.527100 GTCACGGTTTCGGTCTAGATG 58.473 52.381 0.00 0.00 41.39 2.90
2491 2831 1.131883 CGTCACGGTTTCGGTCTAGAT 59.868 52.381 0.00 0.00 41.39 1.98
2492 2832 0.518636 CGTCACGGTTTCGGTCTAGA 59.481 55.000 0.00 0.00 41.39 2.43
2493 2833 0.518636 TCGTCACGGTTTCGGTCTAG 59.481 55.000 0.00 0.00 41.39 2.43
2529 2897 9.784531 CTCTGATCAAAAGTTACCCATATGTAT 57.215 33.333 1.24 0.00 0.00 2.29
2571 2939 7.099120 GCCATTTCCAAGAAACAAAGTCATAT 58.901 34.615 0.00 0.00 0.00 1.78
2581 2950 0.239879 TCGCGCCATTTCCAAGAAAC 59.760 50.000 0.00 0.00 0.00 2.78
2582 2951 0.521291 CTCGCGCCATTTCCAAGAAA 59.479 50.000 0.00 0.00 0.00 2.52
2621 2990 1.006102 AAACCACACGGCTCTCTCG 60.006 57.895 0.00 0.00 34.57 4.04
2622 2991 0.318762 AGAAACCACACGGCTCTCTC 59.681 55.000 0.00 0.00 34.57 3.20
2623 2992 0.034059 CAGAAACCACACGGCTCTCT 59.966 55.000 0.00 0.00 34.57 3.10
2624 2993 1.569479 GCAGAAACCACACGGCTCTC 61.569 60.000 0.00 0.00 34.57 3.20
2665 3034 1.635663 CGGCGTAAAGGAGGTGCAAG 61.636 60.000 0.00 0.00 0.00 4.01
2710 3079 6.140108 GTGTACGTGTGCTATCTTTTTGTTTG 59.860 38.462 0.00 0.00 0.00 2.93
2723 3092 0.032952 ACAATCGGTGTACGTGTGCT 59.967 50.000 0.00 0.00 44.69 4.40
2853 3243 1.114722 CCAACCACAACCAGCCATGT 61.115 55.000 0.00 0.00 0.00 3.21
2873 4449 1.066303 CTGCTACTGATCCACTCCGTC 59.934 57.143 0.00 0.00 0.00 4.79
2888 4464 1.123077 CTCCTACATGCCCACTGCTA 58.877 55.000 0.00 0.00 42.00 3.49
2895 4471 1.339291 GGTACGTACTCCTACATGCCC 59.661 57.143 24.07 0.22 0.00 5.36
2920 6181 2.521708 GCCCTGCCAAACACCACT 60.522 61.111 0.00 0.00 0.00 4.00
2934 6195 2.779033 CCTACCGACCAGTACGCCC 61.779 68.421 0.00 0.00 0.00 6.13
2956 6217 5.070001 TCCATCCATCATTTATTTCCGGAC 58.930 41.667 1.83 0.00 0.00 4.79
2958 6219 5.105635 CCATCCATCCATCATTTATTTCCGG 60.106 44.000 0.00 0.00 0.00 5.14
2959 6220 5.711506 TCCATCCATCCATCATTTATTTCCG 59.288 40.000 0.00 0.00 0.00 4.30
2960 6221 7.364408 CCATCCATCCATCCATCATTTATTTCC 60.364 40.741 0.00 0.00 0.00 3.13
2961 6222 7.364408 CCCATCCATCCATCCATCATTTATTTC 60.364 40.741 0.00 0.00 0.00 2.17
2966 6227 3.786553 CCCATCCATCCATCCATCATTT 58.213 45.455 0.00 0.00 0.00 2.32
2967 6228 2.559026 GCCCATCCATCCATCCATCATT 60.559 50.000 0.00 0.00 0.00 2.57
2969 6230 0.406750 GCCCATCCATCCATCCATCA 59.593 55.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.