Multiple sequence alignment - TraesCS4D01G187000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G187000 chr4D 100.000 2720 0 0 1 2720 325100295 325103014 0.000000e+00 5024.0
1 TraesCS4D01G187000 chr4B 86.951 1502 60 51 539 2016 405369783 405371172 0.000000e+00 1563.0
2 TraesCS4D01G187000 chr4B 90.511 685 38 9 2054 2720 405371175 405371850 0.000000e+00 880.0
3 TraesCS4D01G187000 chr4A 89.576 1180 59 20 579 1720 146562267 146561114 0.000000e+00 1439.0
4 TraesCS4D01G187000 chr4A 93.316 763 36 9 1962 2720 146559025 146558274 0.000000e+00 1112.0
5 TraesCS4D01G187000 chr4A 92.035 226 15 3 1726 1950 146560858 146560635 5.650000e-82 315.0
6 TraesCS4D01G187000 chr4A 90.152 132 10 2 394 523 146562477 146562347 4.660000e-38 169.0
7 TraesCS4D01G187000 chr4A 85.075 134 20 0 257 390 146562672 146562539 1.310000e-28 137.0
8 TraesCS4D01G187000 chr4A 94.118 51 1 2 340 390 655661113 655661065 2.900000e-10 76.8
9 TraesCS4D01G187000 chr4A 97.619 42 1 0 349 390 656038541 656038500 3.760000e-09 73.1
10 TraesCS4D01G187000 chr7D 97.101 207 6 0 1339 1545 12550222 12550016 1.550000e-92 350.0
11 TraesCS4D01G187000 chr7D 95.238 84 4 0 581 664 263503940 263503857 1.700000e-27 134.0
12 TraesCS4D01G187000 chr7D 89.796 98 7 3 576 671 44519727 44519631 3.680000e-24 122.0
13 TraesCS4D01G187000 chr7D 91.954 87 6 1 578 663 44572447 44572533 1.320000e-23 121.0
14 TraesCS4D01G187000 chr7D 88.710 62 6 1 330 390 44548259 44548198 1.040000e-09 75.0
15 TraesCS4D01G187000 chr3D 95.556 90 2 2 581 668 532236225 532236136 2.820000e-30 143.0
16 TraesCS4D01G187000 chr5D 95.349 86 4 0 579 664 428498641 428498556 1.310000e-28 137.0
17 TraesCS4D01G187000 chr5A 98.684 76 1 0 579 654 544155130 544155055 4.720000e-28 135.0
18 TraesCS4D01G187000 chr5A 95.833 48 2 0 343 390 631632243 631632290 8.070000e-11 78.7
19 TraesCS4D01G187000 chr5A 88.333 60 7 0 331 390 631644756 631644815 3.760000e-09 73.1
20 TraesCS4D01G187000 chr7A 90.526 95 7 2 572 664 286223031 286222937 1.020000e-24 124.0
21 TraesCS4D01G187000 chr7A 90.164 61 1 2 334 390 83127609 83127550 1.040000e-09 75.0
22 TraesCS4D01G187000 chr7A 87.097 62 7 1 330 390 46780659 46780598 4.860000e-08 69.4
23 TraesCS4D01G187000 chr6D 97.872 47 1 0 344 390 29095752 29095706 6.240000e-12 82.4
24 TraesCS4D01G187000 chr6B 97.872 47 1 0 344 390 60630175 60630221 6.240000e-12 82.4
25 TraesCS4D01G187000 chrUn 87.879 66 6 2 326 390 48984402 48984466 2.900000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G187000 chr4D 325100295 325103014 2719 False 5024.0 5024 100.0000 1 2720 1 chr4D.!!$F1 2719
1 TraesCS4D01G187000 chr4B 405369783 405371850 2067 False 1221.5 1563 88.7310 539 2720 2 chr4B.!!$F1 2181
2 TraesCS4D01G187000 chr4A 146558274 146562672 4398 True 634.4 1439 90.0308 257 2720 5 chr4A.!!$R3 2463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.032416 GGAGTAGTGACCCAGGCCTA 60.032 60.0 3.98 0.0 0.0 3.93 F
528 589 0.034756 TGCGAACATACACAGGCAGT 59.965 50.0 0.00 0.0 0.0 4.40 F
656 749 0.179018 GATACCCCGCATTTCCAGCT 60.179 55.0 0.00 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1262 1423 0.248843 CCCAAGGCAGACTCAGACTC 59.751 60.0 0.00 0.00 0.0 3.36 R
1329 1501 0.374758 CGTACACCTGCATGCATCAC 59.625 55.0 22.97 13.05 0.0 3.06 R
2320 4367 0.828022 TCGGCAAGGGATAATCGTGT 59.172 50.0 0.00 0.00 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.851639 GGCCTTGTATAGATGGATGGAT 57.148 45.455 6.03 0.00 0.00 3.41
22 23 4.521146 GGCCTTGTATAGATGGATGGATG 58.479 47.826 6.03 0.00 0.00 3.51
23 24 4.521146 GCCTTGTATAGATGGATGGATGG 58.479 47.826 6.03 0.00 0.00 3.51
24 25 4.225942 GCCTTGTATAGATGGATGGATGGA 59.774 45.833 6.03 0.00 0.00 3.41
25 26 5.628666 GCCTTGTATAGATGGATGGATGGAG 60.629 48.000 6.03 0.00 0.00 3.86
26 27 5.486775 CCTTGTATAGATGGATGGATGGAGT 59.513 44.000 0.00 0.00 0.00 3.85
27 28 6.669591 CCTTGTATAGATGGATGGATGGAGTA 59.330 42.308 0.00 0.00 0.00 2.59
28 29 7.147759 CCTTGTATAGATGGATGGATGGAGTAG 60.148 44.444 0.00 0.00 0.00 2.57
29 30 6.805150 TGTATAGATGGATGGATGGAGTAGT 58.195 40.000 0.00 0.00 0.00 2.73
30 31 6.665248 TGTATAGATGGATGGATGGAGTAGTG 59.335 42.308 0.00 0.00 0.00 2.74
31 32 4.204792 AGATGGATGGATGGAGTAGTGA 57.795 45.455 0.00 0.00 0.00 3.41
32 33 3.900601 AGATGGATGGATGGAGTAGTGAC 59.099 47.826 0.00 0.00 0.00 3.67
33 34 2.398588 TGGATGGATGGAGTAGTGACC 58.601 52.381 0.00 0.00 0.00 4.02
34 35 1.694696 GGATGGATGGAGTAGTGACCC 59.305 57.143 0.00 0.00 0.00 4.46
35 36 2.398588 GATGGATGGAGTAGTGACCCA 58.601 52.381 0.00 0.00 32.52 4.51
36 37 1.866015 TGGATGGAGTAGTGACCCAG 58.134 55.000 0.00 0.00 31.79 4.45
37 38 1.123928 GGATGGAGTAGTGACCCAGG 58.876 60.000 0.00 0.00 31.79 4.45
38 39 0.466124 GATGGAGTAGTGACCCAGGC 59.534 60.000 0.00 0.00 31.79 4.85
39 40 0.983378 ATGGAGTAGTGACCCAGGCC 60.983 60.000 0.00 0.00 31.79 5.19
40 41 1.306226 GGAGTAGTGACCCAGGCCT 60.306 63.158 0.00 0.00 0.00 5.19
41 42 0.032416 GGAGTAGTGACCCAGGCCTA 60.032 60.000 3.98 0.00 0.00 3.93
42 43 1.404843 GAGTAGTGACCCAGGCCTAG 58.595 60.000 3.98 1.76 0.00 3.02
43 44 0.688087 AGTAGTGACCCAGGCCTAGC 60.688 60.000 3.98 0.00 0.00 3.42
44 45 0.976073 GTAGTGACCCAGGCCTAGCA 60.976 60.000 3.98 0.00 0.00 3.49
45 46 0.687757 TAGTGACCCAGGCCTAGCAG 60.688 60.000 3.98 0.00 0.00 4.24
46 47 2.122729 TGACCCAGGCCTAGCAGT 59.877 61.111 3.98 0.00 0.00 4.40
47 48 2.293318 TGACCCAGGCCTAGCAGTG 61.293 63.158 3.98 0.00 0.00 3.66
48 49 2.203998 ACCCAGGCCTAGCAGTGT 60.204 61.111 3.98 0.00 0.00 3.55
49 50 2.270205 CCCAGGCCTAGCAGTGTG 59.730 66.667 3.98 0.00 0.00 3.82
50 51 2.270205 CCAGGCCTAGCAGTGTGG 59.730 66.667 3.98 0.00 0.00 4.17
51 52 2.270205 CAGGCCTAGCAGTGTGGG 59.730 66.667 3.98 0.00 0.00 4.61
52 53 2.203998 AGGCCTAGCAGTGTGGGT 60.204 61.111 1.29 0.00 0.00 4.51
53 54 1.847968 AGGCCTAGCAGTGTGGGTT 60.848 57.895 1.29 0.00 0.00 4.11
54 55 1.074951 GGCCTAGCAGTGTGGGTTT 59.925 57.895 0.00 0.00 0.00 3.27
55 56 0.539669 GGCCTAGCAGTGTGGGTTTT 60.540 55.000 0.00 0.00 0.00 2.43
56 57 1.328279 GCCTAGCAGTGTGGGTTTTT 58.672 50.000 0.00 0.00 0.00 1.94
80 81 6.899393 TTTCTTGAGAAAATGGTAGCATGT 57.101 33.333 8.44 0.00 40.68 3.21
81 82 6.899393 TTCTTGAGAAAATGGTAGCATGTT 57.101 33.333 10.11 10.11 0.00 2.71
82 83 6.899393 TCTTGAGAAAATGGTAGCATGTTT 57.101 33.333 11.54 11.82 0.00 2.83
83 84 6.680810 TCTTGAGAAAATGGTAGCATGTTTG 58.319 36.000 11.54 1.88 0.00 2.93
84 85 5.389859 TGAGAAAATGGTAGCATGTTTGG 57.610 39.130 11.54 0.00 0.00 3.28
85 86 4.832266 TGAGAAAATGGTAGCATGTTTGGT 59.168 37.500 11.54 0.62 37.36 3.67
86 87 5.304101 TGAGAAAATGGTAGCATGTTTGGTT 59.696 36.000 11.54 0.00 34.79 3.67
87 88 5.783111 AGAAAATGGTAGCATGTTTGGTTC 58.217 37.500 11.54 7.42 34.79 3.62
88 89 5.539955 AGAAAATGGTAGCATGTTTGGTTCT 59.460 36.000 11.54 9.20 34.79 3.01
89 90 5.806654 AAATGGTAGCATGTTTGGTTCTT 57.193 34.783 8.44 0.00 34.79 2.52
90 91 4.789012 ATGGTAGCATGTTTGGTTCTTG 57.211 40.909 6.62 0.00 34.79 3.02
91 92 3.826524 TGGTAGCATGTTTGGTTCTTGA 58.173 40.909 0.00 0.00 34.79 3.02
92 93 4.211125 TGGTAGCATGTTTGGTTCTTGAA 58.789 39.130 0.00 0.00 34.79 2.69
93 94 4.832266 TGGTAGCATGTTTGGTTCTTGAAT 59.168 37.500 0.00 0.00 34.79 2.57
94 95 5.163513 GGTAGCATGTTTGGTTCTTGAATG 58.836 41.667 0.00 0.00 34.79 2.67
95 96 5.048083 GGTAGCATGTTTGGTTCTTGAATGA 60.048 40.000 0.00 0.00 34.79 2.57
96 97 5.534207 AGCATGTTTGGTTCTTGAATGAA 57.466 34.783 0.00 0.00 0.00 2.57
97 98 5.916318 AGCATGTTTGGTTCTTGAATGAAA 58.084 33.333 0.00 0.00 0.00 2.69
98 99 5.987347 AGCATGTTTGGTTCTTGAATGAAAG 59.013 36.000 0.00 0.00 0.00 2.62
99 100 5.984926 GCATGTTTGGTTCTTGAATGAAAGA 59.015 36.000 0.00 0.00 34.36 2.52
100 101 6.647895 GCATGTTTGGTTCTTGAATGAAAGAT 59.352 34.615 0.00 0.00 36.12 2.40
101 102 7.359765 GCATGTTTGGTTCTTGAATGAAAGATG 60.360 37.037 15.12 15.12 36.12 2.90
102 103 5.984926 TGTTTGGTTCTTGAATGAAAGATGC 59.015 36.000 0.00 0.00 36.12 3.91
103 104 5.787953 TTGGTTCTTGAATGAAAGATGCA 57.212 34.783 0.00 0.00 36.12 3.96
104 105 5.988310 TGGTTCTTGAATGAAAGATGCAT 57.012 34.783 0.00 0.00 36.12 3.96
105 106 7.465353 TTGGTTCTTGAATGAAAGATGCATA 57.535 32.000 0.00 0.00 36.12 3.14
106 107 6.855836 TGGTTCTTGAATGAAAGATGCATAC 58.144 36.000 0.00 0.00 36.12 2.39
107 108 6.433716 TGGTTCTTGAATGAAAGATGCATACA 59.566 34.615 0.00 0.00 36.12 2.29
108 109 6.749118 GGTTCTTGAATGAAAGATGCATACAC 59.251 38.462 0.00 0.00 36.12 2.90
109 110 7.362401 GGTTCTTGAATGAAAGATGCATACACT 60.362 37.037 0.00 0.00 36.12 3.55
110 111 7.312657 TCTTGAATGAAAGATGCATACACTC 57.687 36.000 0.00 0.00 31.19 3.51
111 112 7.108194 TCTTGAATGAAAGATGCATACACTCT 58.892 34.615 0.00 0.00 31.19 3.24
112 113 7.609146 TCTTGAATGAAAGATGCATACACTCTT 59.391 33.333 0.00 0.00 31.19 2.85
113 114 7.080353 TGAATGAAAGATGCATACACTCTTG 57.920 36.000 0.00 0.00 29.96 3.02
114 115 4.952262 TGAAAGATGCATACACTCTTGC 57.048 40.909 0.00 0.00 39.33 4.01
115 116 3.691118 TGAAAGATGCATACACTCTTGCC 59.309 43.478 0.00 0.00 38.08 4.52
116 117 3.641434 AAGATGCATACACTCTTGCCT 57.359 42.857 0.00 0.00 38.08 4.75
117 118 4.760530 AAGATGCATACACTCTTGCCTA 57.239 40.909 0.00 0.00 38.08 3.93
118 119 4.760530 AGATGCATACACTCTTGCCTAA 57.239 40.909 0.00 0.00 38.08 2.69
119 120 5.301835 AGATGCATACACTCTTGCCTAAT 57.698 39.130 0.00 0.00 38.08 1.73
120 121 6.425210 AGATGCATACACTCTTGCCTAATA 57.575 37.500 0.00 0.00 38.08 0.98
121 122 6.830912 AGATGCATACACTCTTGCCTAATAA 58.169 36.000 0.00 0.00 38.08 1.40
122 123 7.282585 AGATGCATACACTCTTGCCTAATAAA 58.717 34.615 0.00 0.00 38.08 1.40
123 124 7.775093 AGATGCATACACTCTTGCCTAATAAAA 59.225 33.333 0.00 0.00 38.08 1.52
124 125 7.695480 TGCATACACTCTTGCCTAATAAAAA 57.305 32.000 0.00 0.00 38.08 1.94
125 126 8.292444 TGCATACACTCTTGCCTAATAAAAAT 57.708 30.769 0.00 0.00 38.08 1.82
126 127 8.748412 TGCATACACTCTTGCCTAATAAAAATT 58.252 29.630 0.00 0.00 38.08 1.82
127 128 9.237846 GCATACACTCTTGCCTAATAAAAATTC 57.762 33.333 0.00 0.00 32.66 2.17
134 135 9.736023 CTCTTGCCTAATAAAAATTCATACACC 57.264 33.333 0.00 0.00 0.00 4.16
135 136 8.691797 TCTTGCCTAATAAAAATTCATACACCC 58.308 33.333 0.00 0.00 0.00 4.61
136 137 8.602472 TTGCCTAATAAAAATTCATACACCCT 57.398 30.769 0.00 0.00 0.00 4.34
137 138 8.602472 TGCCTAATAAAAATTCATACACCCTT 57.398 30.769 0.00 0.00 0.00 3.95
138 139 8.474025 TGCCTAATAAAAATTCATACACCCTTG 58.526 33.333 0.00 0.00 0.00 3.61
139 140 7.438160 GCCTAATAAAAATTCATACACCCTTGC 59.562 37.037 0.00 0.00 0.00 4.01
140 141 7.926018 CCTAATAAAAATTCATACACCCTTGCC 59.074 37.037 0.00 0.00 0.00 4.52
141 142 7.494922 AATAAAAATTCATACACCCTTGCCT 57.505 32.000 0.00 0.00 0.00 4.75
142 143 8.602472 AATAAAAATTCATACACCCTTGCCTA 57.398 30.769 0.00 0.00 0.00 3.93
143 144 6.926630 AAAAATTCATACACCCTTGCCTAA 57.073 33.333 0.00 0.00 0.00 2.69
144 145 6.926630 AAAATTCATACACCCTTGCCTAAA 57.073 33.333 0.00 0.00 0.00 1.85
145 146 6.926630 AAATTCATACACCCTTGCCTAAAA 57.073 33.333 0.00 0.00 0.00 1.52
146 147 6.926630 AATTCATACACCCTTGCCTAAAAA 57.073 33.333 0.00 0.00 0.00 1.94
189 190 9.902684 ATAAATCTATATCCTTTGCTCAGATGG 57.097 33.333 0.00 0.00 0.00 3.51
190 191 5.157940 TCTATATCCTTTGCTCAGATGGC 57.842 43.478 0.00 0.00 0.00 4.40
191 192 2.645838 TATCCTTTGCTCAGATGGCC 57.354 50.000 0.00 0.00 0.00 5.36
192 193 0.465097 ATCCTTTGCTCAGATGGCCG 60.465 55.000 0.00 0.00 0.00 6.13
193 194 2.117156 CCTTTGCTCAGATGGCCGG 61.117 63.158 0.00 0.00 0.00 6.13
194 195 2.045045 TTTGCTCAGATGGCCGGG 60.045 61.111 2.18 0.00 0.00 5.73
195 196 3.643595 TTTGCTCAGATGGCCGGGG 62.644 63.158 2.18 0.00 0.00 5.73
203 204 2.283126 ATGGCCGGGGCATGAAAT 59.717 55.556 32.53 11.60 46.89 2.17
204 205 1.382971 ATGGCCGGGGCATGAAATT 60.383 52.632 32.53 10.82 46.89 1.82
205 206 1.402107 ATGGCCGGGGCATGAAATTC 61.402 55.000 32.53 0.00 46.89 2.17
206 207 2.057408 GGCCGGGGCATGAAATTCA 61.057 57.895 16.76 0.00 44.11 2.57
207 208 1.402107 GGCCGGGGCATGAAATTCAT 61.402 55.000 16.76 2.07 44.11 2.57
208 209 1.327303 GCCGGGGCATGAAATTCATA 58.673 50.000 8.29 0.00 34.28 2.15
209 210 1.270550 GCCGGGGCATGAAATTCATAG 59.729 52.381 8.29 4.85 34.28 2.23
210 211 2.862541 CCGGGGCATGAAATTCATAGA 58.137 47.619 8.29 0.00 34.28 1.98
211 212 2.816087 CCGGGGCATGAAATTCATAGAG 59.184 50.000 8.29 0.00 34.28 2.43
212 213 2.227388 CGGGGCATGAAATTCATAGAGC 59.773 50.000 8.29 8.06 34.28 4.09
213 214 3.494332 GGGGCATGAAATTCATAGAGCT 58.506 45.455 8.29 0.00 34.28 4.09
214 215 3.893813 GGGGCATGAAATTCATAGAGCTT 59.106 43.478 8.29 0.00 34.28 3.74
215 216 4.343239 GGGGCATGAAATTCATAGAGCTTT 59.657 41.667 8.29 0.00 34.28 3.51
216 217 5.508657 GGGGCATGAAATTCATAGAGCTTTC 60.509 44.000 8.29 3.42 34.28 2.62
217 218 5.210715 GGCATGAAATTCATAGAGCTTTCG 58.789 41.667 8.29 0.00 34.28 3.46
218 219 5.220931 GGCATGAAATTCATAGAGCTTTCGT 60.221 40.000 8.29 0.00 34.28 3.85
219 220 6.261118 GCATGAAATTCATAGAGCTTTCGTT 58.739 36.000 8.29 0.00 34.28 3.85
220 221 6.749118 GCATGAAATTCATAGAGCTTTCGTTT 59.251 34.615 8.29 0.00 34.28 3.60
221 222 7.910162 GCATGAAATTCATAGAGCTTTCGTTTA 59.090 33.333 8.29 0.00 34.28 2.01
222 223 9.773328 CATGAAATTCATAGAGCTTTCGTTTAA 57.227 29.630 8.29 0.00 34.28 1.52
224 225 9.773328 TGAAATTCATAGAGCTTTCGTTTAATG 57.227 29.630 0.00 0.00 31.73 1.90
225 226 9.774742 GAAATTCATAGAGCTTTCGTTTAATGT 57.225 29.630 0.00 0.00 0.00 2.71
226 227 9.559958 AAATTCATAGAGCTTTCGTTTAATGTG 57.440 29.630 0.00 0.00 0.00 3.21
227 228 6.106877 TCATAGAGCTTTCGTTTAATGTGC 57.893 37.500 0.00 0.00 0.00 4.57
228 229 3.831715 AGAGCTTTCGTTTAATGTGCC 57.168 42.857 0.00 0.00 0.00 5.01
229 230 3.412386 AGAGCTTTCGTTTAATGTGCCT 58.588 40.909 0.00 0.00 0.00 4.75
230 231 3.821033 AGAGCTTTCGTTTAATGTGCCTT 59.179 39.130 0.00 0.00 0.00 4.35
231 232 4.278419 AGAGCTTTCGTTTAATGTGCCTTT 59.722 37.500 0.00 0.00 0.00 3.11
232 233 4.298332 AGCTTTCGTTTAATGTGCCTTTG 58.702 39.130 0.00 0.00 0.00 2.77
233 234 3.121025 GCTTTCGTTTAATGTGCCTTTGC 60.121 43.478 0.00 0.00 38.26 3.68
234 235 4.298332 CTTTCGTTTAATGTGCCTTTGCT 58.702 39.130 0.00 0.00 38.71 3.91
235 236 3.552604 TCGTTTAATGTGCCTTTGCTC 57.447 42.857 0.00 0.00 38.71 4.26
236 237 2.227865 TCGTTTAATGTGCCTTTGCTCC 59.772 45.455 0.00 0.00 38.71 4.70
237 238 2.671070 CGTTTAATGTGCCTTTGCTCCC 60.671 50.000 0.00 0.00 38.71 4.30
238 239 2.298729 GTTTAATGTGCCTTTGCTCCCA 59.701 45.455 0.00 0.00 38.71 4.37
239 240 2.300956 TAATGTGCCTTTGCTCCCAA 57.699 45.000 0.00 0.00 38.71 4.12
240 241 1.422531 AATGTGCCTTTGCTCCCAAA 58.577 45.000 0.00 0.00 38.56 3.28
241 242 1.422531 ATGTGCCTTTGCTCCCAAAA 58.577 45.000 0.00 0.00 40.21 2.44
242 243 1.198713 TGTGCCTTTGCTCCCAAAAA 58.801 45.000 0.00 0.00 40.21 1.94
275 276 2.135903 AATGTGCCCCACGATGGACA 62.136 55.000 5.71 3.38 40.96 4.02
278 279 0.965363 GTGCCCCACGATGGACAATT 60.965 55.000 5.71 0.00 40.96 2.32
300 301 1.841663 CGTTCGCCCCAACACAGAAG 61.842 60.000 0.00 0.00 0.00 2.85
307 308 0.944386 CCCAACACAGAAGTTGTCCG 59.056 55.000 6.14 0.00 45.66 4.79
308 309 0.307760 CCAACACAGAAGTTGTCCGC 59.692 55.000 6.14 0.00 45.66 5.54
309 310 0.042188 CAACACAGAAGTTGTCCGCG 60.042 55.000 0.00 0.00 42.93 6.46
310 311 1.157870 AACACAGAAGTTGTCCGCGG 61.158 55.000 22.12 22.12 38.16 6.46
321 322 2.388310 TGTCCGCGGATTGTCATTAA 57.612 45.000 33.58 0.18 0.00 1.40
322 323 2.701107 TGTCCGCGGATTGTCATTAAA 58.299 42.857 33.58 0.00 0.00 1.52
323 324 2.417239 TGTCCGCGGATTGTCATTAAAC 59.583 45.455 33.58 14.75 0.00 2.01
327 328 5.007332 GTCCGCGGATTGTCATTAAACTTAT 59.993 40.000 33.58 0.00 0.00 1.73
333 334 9.730420 GCGGATTGTCATTAAACTTATGTAATT 57.270 29.630 0.00 0.00 0.00 1.40
356 357 5.913137 TCACAATTAAACATGGGGATGTC 57.087 39.130 0.00 0.00 32.87 3.06
458 517 9.487790 CTTTTTGTCTAGAGAGATCTTGACTTT 57.512 33.333 16.75 0.00 41.03 2.66
483 544 4.305989 TGCAAAGTCCAAATCTGACAAC 57.694 40.909 0.00 0.00 35.15 3.32
523 584 1.127397 CTGTGCTGCGAACATACACAG 59.873 52.381 7.01 7.01 46.07 3.66
524 585 0.443869 GTGCTGCGAACATACACAGG 59.556 55.000 0.00 0.00 34.50 4.00
525 586 1.298157 TGCTGCGAACATACACAGGC 61.298 55.000 0.00 0.00 0.00 4.85
526 587 1.298157 GCTGCGAACATACACAGGCA 61.298 55.000 0.00 0.00 0.00 4.75
527 588 0.723414 CTGCGAACATACACAGGCAG 59.277 55.000 0.00 0.00 41.42 4.85
528 589 0.034756 TGCGAACATACACAGGCAGT 59.965 50.000 0.00 0.00 0.00 4.40
563 656 6.816640 TGATTTTGTAGAATACTCTTCGTGGG 59.183 38.462 0.00 0.00 43.54 4.61
567 660 5.258841 TGTAGAATACTCTTCGTGGGAGAA 58.741 41.667 8.47 0.00 43.54 2.87
570 663 4.527038 AGAATACTCTTCGTGGGAGAACAA 59.473 41.667 8.47 0.00 35.10 2.83
576 669 2.613506 CGTGGGAGAACAAACGGCC 61.614 63.158 0.00 0.00 32.55 6.13
577 670 1.527380 GTGGGAGAACAAACGGCCA 60.527 57.895 2.24 0.00 0.00 5.36
649 742 1.677552 GGGATCGATACCCCGCATT 59.322 57.895 16.63 0.00 41.38 3.56
656 749 0.179018 GATACCCCGCATTTCCAGCT 60.179 55.000 0.00 0.00 0.00 4.24
701 794 8.981647 CAATTTTCAGGTTTTTCAGATAACAGG 58.018 33.333 0.00 0.00 0.00 4.00
703 796 8.754991 TTTTCAGGTTTTTCAGATAACAGGTA 57.245 30.769 0.00 0.00 0.00 3.08
704 797 7.979444 TTCAGGTTTTTCAGATAACAGGTAG 57.021 36.000 0.00 0.00 0.00 3.18
705 798 5.938125 TCAGGTTTTTCAGATAACAGGTAGC 59.062 40.000 0.00 0.00 0.00 3.58
706 799 5.123979 CAGGTTTTTCAGATAACAGGTAGCC 59.876 44.000 0.00 0.00 0.00 3.93
771 864 3.306502 GGTCTGTACTTCCATCCAAACGA 60.307 47.826 0.00 0.00 0.00 3.85
814 907 4.026744 TGTCATCCAGAAGCTTAGCTAGT 58.973 43.478 7.32 0.00 38.25 2.57
858 951 1.810151 GTTGGTCTGAATTTGCCGCTA 59.190 47.619 0.00 0.00 0.00 4.26
956 1073 3.719646 CTCGCAATGGGCATGGGGA 62.720 63.158 0.00 0.00 45.17 4.81
957 1074 2.522436 CGCAATGGGCATGGGGAT 60.522 61.111 0.00 0.00 45.17 3.85
958 1075 2.863346 CGCAATGGGCATGGGGATG 61.863 63.158 0.00 0.00 45.17 3.51
959 1076 2.513259 GCAATGGGCATGGGGATGG 61.513 63.158 0.00 0.00 43.97 3.51
960 1077 1.839747 CAATGGGCATGGGGATGGG 60.840 63.158 0.00 0.00 0.00 4.00
961 1078 2.335096 AATGGGCATGGGGATGGGT 61.335 57.895 0.00 0.00 0.00 4.51
1096 1220 1.949079 GCAACCCAGGTAAGGTACAGC 60.949 57.143 0.00 0.00 36.27 4.40
1239 1400 4.189188 CGAGGACGGCCAGGTACG 62.189 72.222 11.69 2.93 36.29 3.67
1241 1402 1.750399 GAGGACGGCCAGGTACGTA 60.750 63.158 11.69 0.00 44.24 3.57
1242 1403 1.997928 GAGGACGGCCAGGTACGTAC 61.998 65.000 17.56 17.56 44.24 3.67
1243 1404 2.100991 GACGGCCAGGTACGTACG 59.899 66.667 18.98 15.01 44.24 3.67
1244 1405 4.120331 ACGGCCAGGTACGTACGC 62.120 66.667 16.72 16.07 42.15 4.42
1245 1406 4.118995 CGGCCAGGTACGTACGCA 62.119 66.667 16.72 0.00 0.00 5.24
1246 1407 2.262292 GGCCAGGTACGTACGCAA 59.738 61.111 16.72 0.03 0.00 4.85
1247 1408 2.096442 GGCCAGGTACGTACGCAAC 61.096 63.158 16.72 13.80 0.00 4.17
1265 1426 4.626081 GCAGGGGCGTGTGTGAGT 62.626 66.667 0.00 0.00 0.00 3.41
1266 1427 2.357517 CAGGGGCGTGTGTGAGTC 60.358 66.667 0.00 0.00 0.00 3.36
1267 1428 2.524394 AGGGGCGTGTGTGAGTCT 60.524 61.111 0.00 0.00 0.00 3.24
1268 1429 2.357517 GGGGCGTGTGTGAGTCTG 60.358 66.667 0.00 0.00 0.00 3.51
1293 1454 1.524008 GCCTTGGGTTCTTGAACCGG 61.524 60.000 21.75 18.59 43.75 5.28
1326 1498 2.190488 CTTGGTCCTCTCCTGGTGGC 62.190 65.000 0.00 0.00 0.00 5.01
1327 1499 3.775654 GGTCCTCTCCTGGTGGCG 61.776 72.222 0.00 0.00 0.00 5.69
1328 1500 3.775654 GTCCTCTCCTGGTGGCGG 61.776 72.222 0.00 0.00 0.00 6.13
1331 1503 4.087892 CTCTCCTGGTGGCGGGTG 62.088 72.222 0.00 0.00 0.00 4.61
1332 1504 4.631740 TCTCCTGGTGGCGGGTGA 62.632 66.667 0.00 0.00 0.00 4.02
1333 1505 3.402681 CTCCTGGTGGCGGGTGAT 61.403 66.667 0.00 0.00 0.00 3.06
1334 1506 3.687321 CTCCTGGTGGCGGGTGATG 62.687 68.421 0.00 0.00 0.00 3.07
1336 1508 4.720902 CTGGTGGCGGGTGATGCA 62.721 66.667 0.00 0.00 0.00 3.96
1337 1509 4.045781 TGGTGGCGGGTGATGCAT 62.046 61.111 0.00 0.00 0.00 3.96
1433 1605 2.831742 CTACTACTGCGGCGGGGA 60.832 66.667 14.26 0.00 0.00 4.81
1581 1753 1.079057 GAGAGGGGACTTCAACGCC 60.079 63.158 0.00 0.00 44.43 5.68
1683 1861 0.581529 TCAACTTGCTCGCGTTTCTG 59.418 50.000 5.77 0.00 0.00 3.02
1723 1901 1.227380 ATTCAGGGTCGCTGATCGC 60.227 57.895 19.26 0.23 38.27 4.58
1727 1905 1.454111 AGGGTCGCTGATCGCTAGT 60.454 57.895 7.71 0.00 38.27 2.57
1738 2184 4.098055 TGATCGCTAGTTCACTTCTCAC 57.902 45.455 0.00 0.00 0.00 3.51
1739 2185 3.506067 TGATCGCTAGTTCACTTCTCACA 59.494 43.478 0.00 0.00 0.00 3.58
1740 2186 3.560902 TCGCTAGTTCACTTCTCACAG 57.439 47.619 0.00 0.00 0.00 3.66
1741 2187 3.146847 TCGCTAGTTCACTTCTCACAGA 58.853 45.455 0.00 0.00 0.00 3.41
1742 2188 3.568430 TCGCTAGTTCACTTCTCACAGAA 59.432 43.478 0.00 0.00 32.50 3.02
1743 2189 4.218635 TCGCTAGTTCACTTCTCACAGAAT 59.781 41.667 0.00 0.00 33.13 2.40
1744 2190 4.325741 CGCTAGTTCACTTCTCACAGAATG 59.674 45.833 0.00 0.00 46.00 2.67
1745 2191 4.629200 GCTAGTTCACTTCTCACAGAATGG 59.371 45.833 0.00 0.00 43.62 3.16
1746 2192 4.696479 AGTTCACTTCTCACAGAATGGT 57.304 40.909 0.00 0.00 43.62 3.55
1747 2193 5.808366 AGTTCACTTCTCACAGAATGGTA 57.192 39.130 0.00 0.00 43.62 3.25
1748 2194 5.788450 AGTTCACTTCTCACAGAATGGTAG 58.212 41.667 0.00 0.00 43.62 3.18
1749 2195 4.193826 TCACTTCTCACAGAATGGTAGC 57.806 45.455 0.00 0.00 43.62 3.58
1750 2196 3.578282 TCACTTCTCACAGAATGGTAGCA 59.422 43.478 0.00 0.00 43.62 3.49
1751 2197 3.931468 CACTTCTCACAGAATGGTAGCAG 59.069 47.826 0.00 0.00 43.62 4.24
1752 2198 2.680312 TCTCACAGAATGGTAGCAGC 57.320 50.000 0.00 0.00 43.62 5.25
1753 2199 1.901833 TCTCACAGAATGGTAGCAGCA 59.098 47.619 0.00 0.00 43.62 4.41
1754 2200 2.093816 TCTCACAGAATGGTAGCAGCAG 60.094 50.000 0.00 0.00 43.62 4.24
1755 2201 1.625315 TCACAGAATGGTAGCAGCAGT 59.375 47.619 0.00 0.00 43.62 4.40
1756 2202 2.038952 TCACAGAATGGTAGCAGCAGTT 59.961 45.455 0.00 0.00 43.62 3.16
1757 2203 2.816087 CACAGAATGGTAGCAGCAGTTT 59.184 45.455 0.00 0.00 43.62 2.66
1758 2204 3.077359 ACAGAATGGTAGCAGCAGTTTC 58.923 45.455 0.00 0.00 43.62 2.78
1783 2229 1.464997 CTTTTTGGCTCTAGCGTCACC 59.535 52.381 0.00 0.00 43.26 4.02
1808 2254 4.056740 CAGATGATGTCTCATGCACTACC 58.943 47.826 0.00 0.00 42.27 3.18
1826 2272 6.736519 GCACTACCCTTTTTGGTAAAACGATT 60.737 38.462 0.00 0.00 40.30 3.34
1956 2402 3.449377 GGCTAACTGCTACTCTCCTTTCT 59.551 47.826 0.00 0.00 42.39 2.52
2027 4072 7.510343 TCAAGGGAAAAAGAAATTTCTCTCCAT 59.490 33.333 28.10 23.54 46.79 3.41
2053 4098 1.671379 GGTGGGACTCGGTTGCTTC 60.671 63.158 0.00 0.00 0.00 3.86
2212 4258 6.237969 GGCTTCAACGAGAATCTTAGATGAAC 60.238 42.308 0.00 6.25 35.25 3.18
2220 4266 6.091305 CGAGAATCTTAGATGAACAAGTTGCA 59.909 38.462 1.81 0.00 0.00 4.08
2225 4271 8.621532 ATCTTAGATGAACAAGTTGCAACTTA 57.378 30.769 37.19 25.35 46.89 2.24
2236 4282 8.130307 ACAAGTTGCAACTTAGCTTTAAATTG 57.870 30.769 37.19 25.21 46.89 2.32
2247 4293 8.462016 ACTTAGCTTTAAATTGCTACCATCAAG 58.538 33.333 8.29 7.07 40.89 3.02
2249 4295 4.805719 GCTTTAAATTGCTACCATCAAGCC 59.194 41.667 0.00 0.00 39.30 4.35
2274 4321 1.771854 TCCTGGCAACTACAAACTGGA 59.228 47.619 0.00 0.00 37.61 3.86
2278 4325 1.265905 GGCAACTACAAACTGGAACGG 59.734 52.381 0.00 0.00 42.99 4.44
2401 4448 3.133362 AGGGAAAACGTGTCACTGTTAGA 59.867 43.478 3.55 0.00 0.00 2.10
2402 4449 4.062991 GGGAAAACGTGTCACTGTTAGAT 58.937 43.478 11.71 4.46 0.00 1.98
2403 4450 4.514066 GGGAAAACGTGTCACTGTTAGATT 59.486 41.667 11.71 5.29 0.00 2.40
2404 4451 5.008316 GGGAAAACGTGTCACTGTTAGATTT 59.992 40.000 11.71 5.03 0.00 2.17
2405 4452 6.459161 GGGAAAACGTGTCACTGTTAGATTTT 60.459 38.462 11.71 4.76 0.00 1.82
2427 4474 8.668510 TTTTATGCAAACTAAATGCCAGAAAA 57.331 26.923 0.00 0.00 43.16 2.29
2436 4483 6.092748 ACTAAATGCCAGAAAAACTAATGCG 58.907 36.000 0.00 0.00 0.00 4.73
2437 4484 4.782019 AATGCCAGAAAAACTAATGCGA 57.218 36.364 0.00 0.00 0.00 5.10
2493 4540 7.106239 ACGTTCAGAATTGAGAAGGATACAAT 58.894 34.615 13.16 0.00 34.52 2.71
2494 4541 7.607991 ACGTTCAGAATTGAGAAGGATACAATT 59.392 33.333 13.16 0.00 43.69 2.32
2495 4542 8.454106 CGTTCAGAATTGAGAAGGATACAATTT 58.546 33.333 0.00 0.00 41.96 1.82
2684 4747 8.792830 AAAATAGAGTGCAAGTAATAGCAGAA 57.207 30.769 0.00 0.00 42.14 3.02
2686 4749 8.970859 AATAGAGTGCAAGTAATAGCAGAATT 57.029 30.769 0.00 0.00 42.14 2.17
2687 4750 6.674694 AGAGTGCAAGTAATAGCAGAATTG 57.325 37.500 0.00 0.00 42.14 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.521146 CATCCATCCATCTATACAAGGCC 58.479 47.826 0.00 0.00 0.00 5.19
1 2 4.225942 TCCATCCATCCATCTATACAAGGC 59.774 45.833 0.00 0.00 0.00 4.35
2 3 5.486775 ACTCCATCCATCCATCTATACAAGG 59.513 44.000 0.00 0.00 0.00 3.61
3 4 6.617782 ACTCCATCCATCCATCTATACAAG 57.382 41.667 0.00 0.00 0.00 3.16
4 5 7.179160 CACTACTCCATCCATCCATCTATACAA 59.821 40.741 0.00 0.00 0.00 2.41
5 6 6.665248 CACTACTCCATCCATCCATCTATACA 59.335 42.308 0.00 0.00 0.00 2.29
6 7 6.892456 TCACTACTCCATCCATCCATCTATAC 59.108 42.308 0.00 0.00 0.00 1.47
7 8 6.892456 GTCACTACTCCATCCATCCATCTATA 59.108 42.308 0.00 0.00 0.00 1.31
8 9 5.719085 GTCACTACTCCATCCATCCATCTAT 59.281 44.000 0.00 0.00 0.00 1.98
9 10 5.080337 GTCACTACTCCATCCATCCATCTA 58.920 45.833 0.00 0.00 0.00 1.98
10 11 3.900601 GTCACTACTCCATCCATCCATCT 59.099 47.826 0.00 0.00 0.00 2.90
11 12 3.007398 GGTCACTACTCCATCCATCCATC 59.993 52.174 0.00 0.00 0.00 3.51
12 13 2.975489 GGTCACTACTCCATCCATCCAT 59.025 50.000 0.00 0.00 0.00 3.41
13 14 2.398588 GGTCACTACTCCATCCATCCA 58.601 52.381 0.00 0.00 0.00 3.41
14 15 1.694696 GGGTCACTACTCCATCCATCC 59.305 57.143 0.00 0.00 0.00 3.51
15 16 2.366916 CTGGGTCACTACTCCATCCATC 59.633 54.545 0.00 0.00 0.00 3.51
16 17 2.402564 CTGGGTCACTACTCCATCCAT 58.597 52.381 0.00 0.00 0.00 3.41
17 18 1.622449 CCTGGGTCACTACTCCATCCA 60.622 57.143 0.00 0.00 0.00 3.41
18 19 1.123928 CCTGGGTCACTACTCCATCC 58.876 60.000 0.00 0.00 0.00 3.51
19 20 0.466124 GCCTGGGTCACTACTCCATC 59.534 60.000 0.00 0.00 0.00 3.51
20 21 0.983378 GGCCTGGGTCACTACTCCAT 60.983 60.000 0.00 0.00 0.00 3.41
21 22 1.612442 GGCCTGGGTCACTACTCCA 60.612 63.158 0.00 0.00 0.00 3.86
22 23 0.032416 TAGGCCTGGGTCACTACTCC 60.032 60.000 17.99 0.00 0.00 3.85
23 24 1.404843 CTAGGCCTGGGTCACTACTC 58.595 60.000 17.99 0.00 0.00 2.59
24 25 0.688087 GCTAGGCCTGGGTCACTACT 60.688 60.000 17.99 0.00 0.00 2.57
25 26 0.976073 TGCTAGGCCTGGGTCACTAC 60.976 60.000 17.99 0.00 0.00 2.73
26 27 0.687757 CTGCTAGGCCTGGGTCACTA 60.688 60.000 17.99 0.00 0.00 2.74
27 28 1.992277 CTGCTAGGCCTGGGTCACT 60.992 63.158 17.99 0.00 0.00 3.41
28 29 2.294078 ACTGCTAGGCCTGGGTCAC 61.294 63.158 17.99 0.00 0.00 3.67
29 30 2.122729 ACTGCTAGGCCTGGGTCA 59.877 61.111 17.99 5.83 0.00 4.02
30 31 2.294078 ACACTGCTAGGCCTGGGTC 61.294 63.158 17.99 0.24 0.00 4.46
31 32 2.203998 ACACTGCTAGGCCTGGGT 60.204 61.111 17.99 1.71 0.00 4.51
32 33 2.270205 CACACTGCTAGGCCTGGG 59.730 66.667 17.99 9.51 0.00 4.45
33 34 2.270205 CCACACTGCTAGGCCTGG 59.730 66.667 17.99 15.23 0.00 4.45
34 35 2.129555 AACCCACACTGCTAGGCCTG 62.130 60.000 17.99 6.68 0.00 4.85
35 36 1.427072 AAACCCACACTGCTAGGCCT 61.427 55.000 11.78 11.78 0.00 5.19
36 37 0.539669 AAAACCCACACTGCTAGGCC 60.540 55.000 0.00 0.00 0.00 5.19
37 38 1.328279 AAAAACCCACACTGCTAGGC 58.672 50.000 0.00 0.00 0.00 3.93
57 58 6.899393 ACATGCTACCATTTTCTCAAGAAA 57.101 33.333 1.06 1.06 41.77 2.52
58 59 6.899393 AACATGCTACCATTTTCTCAAGAA 57.101 33.333 0.00 0.00 0.00 2.52
59 60 6.294675 CCAAACATGCTACCATTTTCTCAAGA 60.295 38.462 0.00 0.00 0.00 3.02
60 61 5.865552 CCAAACATGCTACCATTTTCTCAAG 59.134 40.000 0.00 0.00 0.00 3.02
61 62 5.304101 ACCAAACATGCTACCATTTTCTCAA 59.696 36.000 0.00 0.00 0.00 3.02
62 63 4.832266 ACCAAACATGCTACCATTTTCTCA 59.168 37.500 0.00 0.00 0.00 3.27
63 64 5.391312 ACCAAACATGCTACCATTTTCTC 57.609 39.130 0.00 0.00 0.00 2.87
64 65 5.539955 AGAACCAAACATGCTACCATTTTCT 59.460 36.000 0.00 0.00 0.00 2.52
65 66 5.783111 AGAACCAAACATGCTACCATTTTC 58.217 37.500 0.00 0.00 0.00 2.29
66 67 5.806654 AGAACCAAACATGCTACCATTTT 57.193 34.783 0.00 0.00 0.00 1.82
67 68 5.304101 TCAAGAACCAAACATGCTACCATTT 59.696 36.000 0.00 0.00 0.00 2.32
68 69 4.832266 TCAAGAACCAAACATGCTACCATT 59.168 37.500 0.00 0.00 0.00 3.16
69 70 4.406456 TCAAGAACCAAACATGCTACCAT 58.594 39.130 0.00 0.00 0.00 3.55
70 71 3.826524 TCAAGAACCAAACATGCTACCA 58.173 40.909 0.00 0.00 0.00 3.25
71 72 4.846779 TTCAAGAACCAAACATGCTACC 57.153 40.909 0.00 0.00 0.00 3.18
72 73 6.012658 TCATTCAAGAACCAAACATGCTAC 57.987 37.500 0.00 0.00 0.00 3.58
73 74 6.647334 TTCATTCAAGAACCAAACATGCTA 57.353 33.333 0.00 0.00 0.00 3.49
74 75 5.534207 TTCATTCAAGAACCAAACATGCT 57.466 34.783 0.00 0.00 0.00 3.79
75 76 5.984926 TCTTTCATTCAAGAACCAAACATGC 59.015 36.000 0.00 0.00 29.41 4.06
76 77 7.359765 GCATCTTTCATTCAAGAACCAAACATG 60.360 37.037 0.00 0.00 36.36 3.21
77 78 6.647895 GCATCTTTCATTCAAGAACCAAACAT 59.352 34.615 0.00 0.00 36.36 2.71
78 79 5.984926 GCATCTTTCATTCAAGAACCAAACA 59.015 36.000 0.00 0.00 36.36 2.83
79 80 5.984926 TGCATCTTTCATTCAAGAACCAAAC 59.015 36.000 0.00 0.00 36.36 2.93
80 81 6.159299 TGCATCTTTCATTCAAGAACCAAA 57.841 33.333 0.00 0.00 36.36 3.28
81 82 5.787953 TGCATCTTTCATTCAAGAACCAA 57.212 34.783 0.00 0.00 36.36 3.67
82 83 5.988310 ATGCATCTTTCATTCAAGAACCA 57.012 34.783 0.00 0.00 36.36 3.67
83 84 6.749118 GTGTATGCATCTTTCATTCAAGAACC 59.251 38.462 0.19 0.00 36.36 3.62
84 85 7.533426 AGTGTATGCATCTTTCATTCAAGAAC 58.467 34.615 0.19 0.00 36.36 3.01
85 86 7.609146 AGAGTGTATGCATCTTTCATTCAAGAA 59.391 33.333 0.19 0.00 36.36 2.52
86 87 7.108194 AGAGTGTATGCATCTTTCATTCAAGA 58.892 34.615 0.19 0.00 37.20 3.02
87 88 7.317842 AGAGTGTATGCATCTTTCATTCAAG 57.682 36.000 0.19 0.00 0.00 3.02
88 89 7.532571 CAAGAGTGTATGCATCTTTCATTCAA 58.467 34.615 0.19 0.00 30.99 2.69
89 90 6.403964 GCAAGAGTGTATGCATCTTTCATTCA 60.404 38.462 0.19 0.00 42.12 2.57
90 91 5.970023 GCAAGAGTGTATGCATCTTTCATTC 59.030 40.000 0.19 5.60 42.12 2.67
91 92 5.163581 GGCAAGAGTGTATGCATCTTTCATT 60.164 40.000 0.19 0.00 44.32 2.57
92 93 4.337555 GGCAAGAGTGTATGCATCTTTCAT 59.662 41.667 0.19 0.00 44.32 2.57
93 94 3.691118 GGCAAGAGTGTATGCATCTTTCA 59.309 43.478 0.19 0.00 44.32 2.69
94 95 3.944015 AGGCAAGAGTGTATGCATCTTTC 59.056 43.478 0.19 0.00 44.32 2.62
95 96 3.960571 AGGCAAGAGTGTATGCATCTTT 58.039 40.909 0.19 0.00 44.32 2.52
96 97 3.641434 AGGCAAGAGTGTATGCATCTT 57.359 42.857 0.19 0.00 44.32 2.40
97 98 4.760530 TTAGGCAAGAGTGTATGCATCT 57.239 40.909 0.19 0.00 44.32 2.90
98 99 7.496529 TTTATTAGGCAAGAGTGTATGCATC 57.503 36.000 0.19 0.00 44.32 3.91
99 100 7.880160 TTTTATTAGGCAAGAGTGTATGCAT 57.120 32.000 3.79 3.79 44.32 3.96
100 101 7.695480 TTTTTATTAGGCAAGAGTGTATGCA 57.305 32.000 0.00 0.00 44.32 3.96
101 102 9.237846 GAATTTTTATTAGGCAAGAGTGTATGC 57.762 33.333 0.00 0.00 41.82 3.14
108 109 9.736023 GGTGTATGAATTTTTATTAGGCAAGAG 57.264 33.333 0.00 0.00 0.00 2.85
109 110 8.691797 GGGTGTATGAATTTTTATTAGGCAAGA 58.308 33.333 0.00 0.00 0.00 3.02
110 111 8.695456 AGGGTGTATGAATTTTTATTAGGCAAG 58.305 33.333 0.00 0.00 0.00 4.01
111 112 8.602472 AGGGTGTATGAATTTTTATTAGGCAA 57.398 30.769 0.00 0.00 0.00 4.52
112 113 8.474025 CAAGGGTGTATGAATTTTTATTAGGCA 58.526 33.333 0.00 0.00 0.00 4.75
113 114 7.438160 GCAAGGGTGTATGAATTTTTATTAGGC 59.562 37.037 0.00 0.00 0.00 3.93
114 115 7.926018 GGCAAGGGTGTATGAATTTTTATTAGG 59.074 37.037 0.00 0.00 0.00 2.69
115 116 8.695456 AGGCAAGGGTGTATGAATTTTTATTAG 58.305 33.333 0.00 0.00 0.00 1.73
116 117 8.602472 AGGCAAGGGTGTATGAATTTTTATTA 57.398 30.769 0.00 0.00 0.00 0.98
117 118 7.494922 AGGCAAGGGTGTATGAATTTTTATT 57.505 32.000 0.00 0.00 0.00 1.40
118 119 8.602472 TTAGGCAAGGGTGTATGAATTTTTAT 57.398 30.769 0.00 0.00 0.00 1.40
119 120 8.423906 TTTAGGCAAGGGTGTATGAATTTTTA 57.576 30.769 0.00 0.00 0.00 1.52
120 121 6.926630 TTAGGCAAGGGTGTATGAATTTTT 57.073 33.333 0.00 0.00 0.00 1.94
121 122 6.926630 TTTAGGCAAGGGTGTATGAATTTT 57.073 33.333 0.00 0.00 0.00 1.82
122 123 6.926630 TTTTAGGCAAGGGTGTATGAATTT 57.073 33.333 0.00 0.00 0.00 1.82
123 124 6.926630 TTTTTAGGCAAGGGTGTATGAATT 57.073 33.333 0.00 0.00 0.00 2.17
163 164 9.902684 CCATCTGAGCAAAGGATATAGATTTAT 57.097 33.333 0.00 0.00 0.00 1.40
164 165 7.826252 GCCATCTGAGCAAAGGATATAGATTTA 59.174 37.037 0.00 0.00 0.00 1.40
165 166 6.658391 GCCATCTGAGCAAAGGATATAGATTT 59.342 38.462 0.00 0.00 0.00 2.17
166 167 6.179040 GCCATCTGAGCAAAGGATATAGATT 58.821 40.000 0.00 0.00 0.00 2.40
167 168 5.339035 GGCCATCTGAGCAAAGGATATAGAT 60.339 44.000 0.00 0.00 0.00 1.98
168 169 4.019860 GGCCATCTGAGCAAAGGATATAGA 60.020 45.833 0.00 0.00 0.00 1.98
169 170 4.260170 GGCCATCTGAGCAAAGGATATAG 58.740 47.826 0.00 0.00 0.00 1.31
170 171 3.306989 CGGCCATCTGAGCAAAGGATATA 60.307 47.826 2.24 0.00 0.00 0.86
171 172 2.551721 CGGCCATCTGAGCAAAGGATAT 60.552 50.000 2.24 0.00 0.00 1.63
172 173 1.202687 CGGCCATCTGAGCAAAGGATA 60.203 52.381 2.24 0.00 0.00 2.59
173 174 0.465097 CGGCCATCTGAGCAAAGGAT 60.465 55.000 2.24 0.00 0.00 3.24
174 175 1.078214 CGGCCATCTGAGCAAAGGA 60.078 57.895 2.24 0.00 0.00 3.36
175 176 2.117156 CCGGCCATCTGAGCAAAGG 61.117 63.158 2.24 0.00 0.00 3.11
176 177 2.117156 CCCGGCCATCTGAGCAAAG 61.117 63.158 2.24 0.00 0.00 2.77
177 178 2.045045 CCCGGCCATCTGAGCAAA 60.045 61.111 2.24 0.00 0.00 3.68
178 179 4.113815 CCCCGGCCATCTGAGCAA 62.114 66.667 2.24 0.00 0.00 3.91
181 182 3.882326 ATGCCCCGGCCATCTGAG 61.882 66.667 2.24 0.00 41.09 3.35
182 183 4.193893 CATGCCCCGGCCATCTGA 62.194 66.667 2.24 0.00 41.09 3.27
183 184 3.719646 TTCATGCCCCGGCCATCTG 62.720 63.158 2.24 0.00 41.09 2.90
184 185 2.302517 ATTTCATGCCCCGGCCATCT 62.303 55.000 2.24 0.00 41.09 2.90
185 186 1.402107 AATTTCATGCCCCGGCCATC 61.402 55.000 2.24 0.00 41.09 3.51
186 187 1.382971 AATTTCATGCCCCGGCCAT 60.383 52.632 2.24 0.00 41.09 4.40
187 188 2.038651 AATTTCATGCCCCGGCCA 59.961 55.556 2.24 0.00 41.09 5.36
188 189 1.402107 ATGAATTTCATGCCCCGGCC 61.402 55.000 11.06 0.00 35.43 6.13
189 190 1.270550 CTATGAATTTCATGCCCCGGC 59.729 52.381 19.81 0.00 37.70 6.13
190 191 2.816087 CTCTATGAATTTCATGCCCCGG 59.184 50.000 19.81 0.00 37.70 5.73
191 192 2.227388 GCTCTATGAATTTCATGCCCCG 59.773 50.000 19.81 6.82 37.70 5.73
192 193 3.494332 AGCTCTATGAATTTCATGCCCC 58.506 45.455 19.81 7.66 37.70 5.80
193 194 5.526506 AAAGCTCTATGAATTTCATGCCC 57.473 39.130 19.81 7.37 37.70 5.36
194 195 5.210715 CGAAAGCTCTATGAATTTCATGCC 58.789 41.667 19.81 7.08 37.70 4.40
195 196 5.814783 ACGAAAGCTCTATGAATTTCATGC 58.185 37.500 19.81 14.87 37.70 4.06
196 197 9.773328 TTAAACGAAAGCTCTATGAATTTCATG 57.227 29.630 19.81 10.98 37.70 3.07
198 199 9.773328 CATTAAACGAAAGCTCTATGAATTTCA 57.227 29.630 0.75 0.75 32.44 2.69
199 200 9.774742 ACATTAAACGAAAGCTCTATGAATTTC 57.225 29.630 0.00 0.00 0.00 2.17
200 201 9.559958 CACATTAAACGAAAGCTCTATGAATTT 57.440 29.630 0.00 0.00 0.00 1.82
201 202 7.698130 GCACATTAAACGAAAGCTCTATGAATT 59.302 33.333 0.00 0.00 0.00 2.17
202 203 7.189512 GCACATTAAACGAAAGCTCTATGAAT 58.810 34.615 0.00 0.00 0.00 2.57
203 204 6.403200 GGCACATTAAACGAAAGCTCTATGAA 60.403 38.462 0.00 0.00 0.00 2.57
204 205 5.064707 GGCACATTAAACGAAAGCTCTATGA 59.935 40.000 0.00 0.00 0.00 2.15
205 206 5.065218 AGGCACATTAAACGAAAGCTCTATG 59.935 40.000 0.00 0.00 0.00 2.23
206 207 5.186198 AGGCACATTAAACGAAAGCTCTAT 58.814 37.500 0.00 0.00 0.00 1.98
207 208 4.575885 AGGCACATTAAACGAAAGCTCTA 58.424 39.130 0.00 0.00 0.00 2.43
208 209 3.412386 AGGCACATTAAACGAAAGCTCT 58.588 40.909 0.00 0.00 0.00 4.09
209 210 3.831715 AGGCACATTAAACGAAAGCTC 57.168 42.857 0.00 0.00 0.00 4.09
210 211 4.298332 CAAAGGCACATTAAACGAAAGCT 58.702 39.130 0.00 0.00 0.00 3.74
211 212 3.121025 GCAAAGGCACATTAAACGAAAGC 60.121 43.478 0.00 0.00 40.72 3.51
212 213 4.298332 AGCAAAGGCACATTAAACGAAAG 58.702 39.130 0.00 0.00 44.61 2.62
213 214 4.295051 GAGCAAAGGCACATTAAACGAAA 58.705 39.130 0.00 0.00 44.61 3.46
214 215 3.305064 GGAGCAAAGGCACATTAAACGAA 60.305 43.478 0.00 0.00 44.61 3.85
215 216 2.227865 GGAGCAAAGGCACATTAAACGA 59.772 45.455 0.00 0.00 44.61 3.85
216 217 2.595386 GGAGCAAAGGCACATTAAACG 58.405 47.619 0.00 0.00 44.61 3.60
217 218 2.298729 TGGGAGCAAAGGCACATTAAAC 59.701 45.455 0.00 0.00 44.61 2.01
218 219 2.603021 TGGGAGCAAAGGCACATTAAA 58.397 42.857 0.00 0.00 44.61 1.52
219 220 2.300956 TGGGAGCAAAGGCACATTAA 57.699 45.000 0.00 0.00 44.61 1.40
220 221 2.300956 TTGGGAGCAAAGGCACATTA 57.699 45.000 0.00 0.00 44.61 1.90
221 222 1.422531 TTTGGGAGCAAAGGCACATT 58.577 45.000 0.00 0.00 44.61 2.71
222 223 1.422531 TTTTGGGAGCAAAGGCACAT 58.577 45.000 0.00 0.00 44.61 3.21
223 224 1.198713 TTTTTGGGAGCAAAGGCACA 58.801 45.000 0.00 0.00 44.61 4.57
241 242 5.286438 GGGCACATTAAACGTTCTCTTTTT 58.714 37.500 0.00 0.00 0.00 1.94
242 243 4.261867 GGGGCACATTAAACGTTCTCTTTT 60.262 41.667 0.00 0.00 0.00 2.27
243 244 3.254903 GGGGCACATTAAACGTTCTCTTT 59.745 43.478 0.00 0.00 0.00 2.52
244 245 2.817844 GGGGCACATTAAACGTTCTCTT 59.182 45.455 0.00 0.00 0.00 2.85
245 246 2.224670 TGGGGCACATTAAACGTTCTCT 60.225 45.455 0.00 0.00 0.00 3.10
246 247 2.095415 GTGGGGCACATTAAACGTTCTC 60.095 50.000 0.00 0.00 34.08 2.87
247 248 1.883926 GTGGGGCACATTAAACGTTCT 59.116 47.619 0.00 0.00 34.08 3.01
248 249 1.400500 CGTGGGGCACATTAAACGTTC 60.400 52.381 0.00 0.00 33.40 3.95
249 250 0.594110 CGTGGGGCACATTAAACGTT 59.406 50.000 0.00 0.00 33.40 3.99
250 251 0.250381 TCGTGGGGCACATTAAACGT 60.250 50.000 0.00 0.00 33.40 3.99
251 252 1.091537 ATCGTGGGGCACATTAAACG 58.908 50.000 0.00 0.00 33.40 3.60
252 253 1.134175 CCATCGTGGGGCACATTAAAC 59.866 52.381 0.00 0.00 33.40 2.01
253 254 1.004862 TCCATCGTGGGGCACATTAAA 59.995 47.619 0.00 0.00 38.32 1.52
254 255 0.621082 TCCATCGTGGGGCACATTAA 59.379 50.000 0.00 0.00 38.32 1.40
255 256 0.107410 GTCCATCGTGGGGCACATTA 60.107 55.000 0.00 0.00 38.32 1.90
275 276 1.741145 GTGTTGGGGCGAACGATAATT 59.259 47.619 0.00 0.00 0.00 1.40
278 279 0.390603 CTGTGTTGGGGCGAACGATA 60.391 55.000 0.00 0.00 0.00 2.92
284 285 0.817634 CAACTTCTGTGTTGGGGCGA 60.818 55.000 0.00 0.00 42.39 5.54
300 301 0.802494 AATGACAATCCGCGGACAAC 59.198 50.000 33.75 21.54 0.00 3.32
307 308 9.730420 AATTACATAAGTTTAATGACAATCCGC 57.270 29.630 0.00 0.00 0.00 5.54
327 328 8.195165 TCCCCATGTTTAATTGTGAAATTACA 57.805 30.769 0.00 0.00 0.00 2.41
333 334 5.105957 CGACATCCCCATGTTTAATTGTGAA 60.106 40.000 0.00 0.00 43.79 3.18
334 335 4.397730 CGACATCCCCATGTTTAATTGTGA 59.602 41.667 0.00 0.00 43.79 3.58
335 336 4.671377 CGACATCCCCATGTTTAATTGTG 58.329 43.478 0.00 0.00 43.79 3.33
340 341 2.026729 TGAGCGACATCCCCATGTTTAA 60.027 45.455 0.00 0.00 43.79 1.52
341 342 1.557371 TGAGCGACATCCCCATGTTTA 59.443 47.619 0.00 0.00 43.79 2.01
342 343 0.327924 TGAGCGACATCCCCATGTTT 59.672 50.000 0.00 0.00 43.79 2.83
392 393 9.944663 GATAGTGTTTTTGTCACAGTATTTTCA 57.055 29.630 2.69 0.00 39.75 2.69
440 499 7.542890 TGCAAGTAAAGTCAAGATCTCTCTAG 58.457 38.462 0.00 0.00 0.00 2.43
441 500 7.468141 TGCAAGTAAAGTCAAGATCTCTCTA 57.532 36.000 0.00 0.00 0.00 2.43
458 517 5.129634 TGTCAGATTTGGACTTTGCAAGTA 58.870 37.500 0.00 0.00 43.03 2.24
498 559 1.527034 ATGTTCGCAGCACAGATTGT 58.473 45.000 0.00 0.00 0.00 2.71
500 561 2.416547 GTGTATGTTCGCAGCACAGATT 59.583 45.455 0.00 0.00 37.11 2.40
501 562 2.002586 GTGTATGTTCGCAGCACAGAT 58.997 47.619 0.00 0.00 37.11 2.90
503 564 1.147473 TGTGTATGTTCGCAGCACAG 58.853 50.000 0.00 0.00 39.89 3.66
523 584 9.638239 TCTACAAAATCAAAATATTTCACTGCC 57.362 29.630 0.10 0.00 0.00 4.85
536 597 8.717821 CCACGAAGAGTATTCTACAAAATCAAA 58.282 33.333 0.00 0.00 31.96 2.69
537 598 7.333423 CCCACGAAGAGTATTCTACAAAATCAA 59.667 37.037 0.00 0.00 31.96 2.57
553 646 1.792949 CGTTTGTTCTCCCACGAAGAG 59.207 52.381 0.00 0.00 34.49 2.85
561 654 0.747852 TTTTGGCCGTTTGTTCTCCC 59.252 50.000 0.00 0.00 0.00 4.30
563 656 1.269569 CCCTTTTGGCCGTTTGTTCTC 60.270 52.381 0.00 0.00 38.58 2.87
567 660 0.471022 ATCCCCTTTTGGCCGTTTGT 60.471 50.000 0.00 0.00 38.58 2.83
570 663 0.406361 TACATCCCCTTTTGGCCGTT 59.594 50.000 0.00 0.00 38.58 4.44
576 669 3.634397 TCTGAGCTACATCCCCTTTTG 57.366 47.619 0.00 0.00 0.00 2.44
577 670 3.117738 CCATCTGAGCTACATCCCCTTTT 60.118 47.826 0.00 0.00 0.00 2.27
649 742 8.741603 AGTTAGTTTACAAAAAGTAGCTGGAA 57.258 30.769 0.00 0.00 39.32 3.53
678 771 7.654022 ACCTGTTATCTGAAAAACCTGAAAA 57.346 32.000 4.44 0.00 0.00 2.29
685 778 6.569179 TTGGCTACCTGTTATCTGAAAAAC 57.431 37.500 0.00 0.69 0.00 2.43
701 794 0.535102 ACACACAGTGGCTTGGCTAC 60.535 55.000 5.31 0.00 40.33 3.58
703 796 0.684153 AAACACACAGTGGCTTGGCT 60.684 50.000 5.31 0.00 37.94 4.75
704 797 0.528249 CAAACACACAGTGGCTTGGC 60.528 55.000 5.31 0.00 37.94 4.52
705 798 0.528249 GCAAACACACAGTGGCTTGG 60.528 55.000 5.31 0.00 37.94 3.61
706 799 0.457035 AGCAAACACACAGTGGCTTG 59.543 50.000 5.31 6.36 38.18 4.01
771 864 0.319469 CAACCGCGGCAAGGAAAATT 60.319 50.000 28.58 5.37 0.00 1.82
793 886 4.367450 CACTAGCTAAGCTTCTGGATGAC 58.633 47.826 0.00 0.00 40.44 3.06
814 907 1.130054 ACCTGCCTGCTCTCTTTCCA 61.130 55.000 0.00 0.00 0.00 3.53
880 973 8.597662 TGGTCGTAATATAAGATTGCCTAAAC 57.402 34.615 0.00 0.00 0.00 2.01
885 978 7.667043 TCATTGGTCGTAATATAAGATTGCC 57.333 36.000 0.00 0.00 0.00 4.52
886 979 7.740346 CGTTCATTGGTCGTAATATAAGATTGC 59.260 37.037 0.00 0.00 0.00 3.56
901 1018 1.071239 CGCGATGATCGTTCATTGGTC 60.071 52.381 20.38 8.01 42.73 4.02
1096 1220 3.018428 GCTGTGTTTGTGCGTGCG 61.018 61.111 0.00 0.00 0.00 5.34
1185 1320 2.502492 GCGGGCAGAGGCTCTATCA 61.502 63.158 18.26 0.00 38.83 2.15
1248 1409 4.626081 ACTCACACACGCCCCTGC 62.626 66.667 0.00 0.00 0.00 4.85
1249 1410 2.357517 GACTCACACACGCCCCTG 60.358 66.667 0.00 0.00 0.00 4.45
1250 1411 2.524394 AGACTCACACACGCCCCT 60.524 61.111 0.00 0.00 0.00 4.79
1251 1412 2.357517 CAGACTCACACACGCCCC 60.358 66.667 0.00 0.00 0.00 5.80
1252 1413 1.373497 CTCAGACTCACACACGCCC 60.373 63.158 0.00 0.00 0.00 6.13
1253 1414 0.664767 GACTCAGACTCACACACGCC 60.665 60.000 0.00 0.00 0.00 5.68
1254 1415 0.312416 AGACTCAGACTCACACACGC 59.688 55.000 0.00 0.00 0.00 5.34
1255 1416 1.928152 GCAGACTCAGACTCACACACG 60.928 57.143 0.00 0.00 0.00 4.49
1256 1417 1.604185 GGCAGACTCAGACTCACACAC 60.604 57.143 0.00 0.00 0.00 3.82
1257 1418 0.676184 GGCAGACTCAGACTCACACA 59.324 55.000 0.00 0.00 0.00 3.72
1258 1419 0.965439 AGGCAGACTCAGACTCACAC 59.035 55.000 0.00 0.00 0.00 3.82
1259 1420 1.342496 CAAGGCAGACTCAGACTCACA 59.658 52.381 0.00 0.00 0.00 3.58
1260 1421 1.337635 CCAAGGCAGACTCAGACTCAC 60.338 57.143 0.00 0.00 0.00 3.51
1261 1422 0.972134 CCAAGGCAGACTCAGACTCA 59.028 55.000 0.00 0.00 0.00 3.41
1262 1423 0.248843 CCCAAGGCAGACTCAGACTC 59.751 60.000 0.00 0.00 0.00 3.36
1263 1424 0.472734 ACCCAAGGCAGACTCAGACT 60.473 55.000 0.00 0.00 0.00 3.24
1264 1425 0.398318 AACCCAAGGCAGACTCAGAC 59.602 55.000 0.00 0.00 0.00 3.51
1265 1426 0.687354 GAACCCAAGGCAGACTCAGA 59.313 55.000 0.00 0.00 0.00 3.27
1266 1427 0.689623 AGAACCCAAGGCAGACTCAG 59.310 55.000 0.00 0.00 0.00 3.35
1267 1428 1.140312 AAGAACCCAAGGCAGACTCA 58.860 50.000 0.00 0.00 0.00 3.41
1268 1429 1.072331 TCAAGAACCCAAGGCAGACTC 59.928 52.381 0.00 0.00 0.00 3.36
1293 1454 1.376812 CCAAGGTAAGACCCACCGC 60.377 63.158 0.00 0.00 39.75 5.68
1326 1498 2.438975 ACCTGCATGCATCACCCG 60.439 61.111 22.97 8.20 0.00 5.28
1327 1499 0.394216 TACACCTGCATGCATCACCC 60.394 55.000 22.97 0.00 0.00 4.61
1328 1500 0.734889 GTACACCTGCATGCATCACC 59.265 55.000 22.97 3.68 0.00 4.02
1329 1501 0.374758 CGTACACCTGCATGCATCAC 59.625 55.000 22.97 13.05 0.00 3.06
1330 1502 0.744057 CCGTACACCTGCATGCATCA 60.744 55.000 22.97 0.00 0.00 3.07
1331 1503 1.439353 CCCGTACACCTGCATGCATC 61.439 60.000 22.97 6.91 0.00 3.91
1332 1504 1.451927 CCCGTACACCTGCATGCAT 60.452 57.895 22.97 9.00 0.00 3.96
1333 1505 2.046411 CCCGTACACCTGCATGCA 60.046 61.111 21.29 21.29 0.00 3.96
1334 1506 2.046314 ACCCGTACACCTGCATGC 60.046 61.111 11.82 11.82 0.00 4.06
1335 1507 2.398554 GCACCCGTACACCTGCATG 61.399 63.158 0.00 0.00 0.00 4.06
1336 1508 2.046314 GCACCCGTACACCTGCAT 60.046 61.111 0.00 0.00 0.00 3.96
1337 1509 3.238497 AGCACCCGTACACCTGCA 61.238 61.111 8.02 0.00 31.71 4.41
1433 1605 3.991051 CCGTCTCCACCACGCACT 61.991 66.667 0.00 0.00 35.87 4.40
1581 1753 2.043652 CCCATGGGTGGCTCCAAG 60.044 66.667 23.93 2.11 44.62 3.61
1723 1901 5.788450 ACCATTCTGTGAGAAGTGAACTAG 58.212 41.667 0.00 0.00 37.69 2.57
1727 1905 4.040339 TGCTACCATTCTGTGAGAAGTGAA 59.960 41.667 0.00 0.00 37.69 3.18
1738 2184 2.094894 CGAAACTGCTGCTACCATTCTG 59.905 50.000 0.00 0.00 0.00 3.02
1739 2185 2.289694 ACGAAACTGCTGCTACCATTCT 60.290 45.455 0.00 0.00 0.00 2.40
1740 2186 2.076863 ACGAAACTGCTGCTACCATTC 58.923 47.619 0.00 0.00 0.00 2.67
1741 2187 2.185004 ACGAAACTGCTGCTACCATT 57.815 45.000 0.00 0.00 0.00 3.16
1742 2188 2.185004 AACGAAACTGCTGCTACCAT 57.815 45.000 0.00 0.00 0.00 3.55
1743 2189 1.871039 GAAACGAAACTGCTGCTACCA 59.129 47.619 0.00 0.00 0.00 3.25
1744 2190 2.143925 AGAAACGAAACTGCTGCTACC 58.856 47.619 0.00 0.00 0.00 3.18
1745 2191 3.879932 AAGAAACGAAACTGCTGCTAC 57.120 42.857 0.00 0.00 0.00 3.58
1746 2192 4.893424 AAAAGAAACGAAACTGCTGCTA 57.107 36.364 0.00 0.00 0.00 3.49
1747 2193 3.782889 AAAAGAAACGAAACTGCTGCT 57.217 38.095 0.00 0.00 0.00 4.24
1748 2194 3.000222 CCAAAAAGAAACGAAACTGCTGC 60.000 43.478 0.00 0.00 0.00 5.25
1749 2195 3.000222 GCCAAAAAGAAACGAAACTGCTG 60.000 43.478 0.00 0.00 0.00 4.41
1750 2196 3.119137 AGCCAAAAAGAAACGAAACTGCT 60.119 39.130 0.00 0.00 0.00 4.24
1751 2197 3.186909 AGCCAAAAAGAAACGAAACTGC 58.813 40.909 0.00 0.00 0.00 4.40
1752 2198 4.672409 AGAGCCAAAAAGAAACGAAACTG 58.328 39.130 0.00 0.00 0.00 3.16
1753 2199 4.983671 AGAGCCAAAAAGAAACGAAACT 57.016 36.364 0.00 0.00 0.00 2.66
1754 2200 4.675565 GCTAGAGCCAAAAAGAAACGAAAC 59.324 41.667 0.00 0.00 34.31 2.78
1755 2201 4.553938 CGCTAGAGCCAAAAAGAAACGAAA 60.554 41.667 0.00 0.00 37.91 3.46
1756 2202 3.059188 CGCTAGAGCCAAAAAGAAACGAA 60.059 43.478 0.00 0.00 37.91 3.85
1757 2203 2.478894 CGCTAGAGCCAAAAAGAAACGA 59.521 45.455 0.00 0.00 37.91 3.85
1758 2204 2.223377 ACGCTAGAGCCAAAAAGAAACG 59.777 45.455 0.00 0.00 37.91 3.60
1783 2229 2.288186 GTGCATGAGACATCATCTGCTG 59.712 50.000 0.00 0.00 44.58 4.41
1808 2254 8.587952 AGAATTGAATCGTTTTACCAAAAAGG 57.412 30.769 0.00 0.00 45.67 3.11
2027 4072 2.112297 GAGTCCCACCCGTTTGCA 59.888 61.111 0.00 0.00 0.00 4.08
2053 4098 5.995282 TGGCAAATATTAGTCCCGAGTTATG 59.005 40.000 0.00 0.00 0.00 1.90
2220 4266 8.348285 TGATGGTAGCAATTTAAAGCTAAGTT 57.652 30.769 9.92 0.47 44.18 2.66
2225 4271 5.394553 GGCTTGATGGTAGCAATTTAAAGCT 60.395 40.000 20.04 7.09 44.55 3.74
2236 4282 1.604278 GGAAATCGGCTTGATGGTAGC 59.396 52.381 0.00 0.00 37.39 3.58
2249 4295 3.502211 AGTTTGTAGTTGCCAGGAAATCG 59.498 43.478 0.00 0.00 0.00 3.34
2274 4321 4.735369 AGATAGTGGATCTCTGATCCGTT 58.265 43.478 18.27 12.57 41.37 4.44
2278 4325 6.647334 TGTGAAGATAGTGGATCTCTGATC 57.353 41.667 0.00 0.00 44.68 2.92
2318 4365 2.431419 TCGGCAAGGGATAATCGTGTTA 59.569 45.455 0.00 0.00 0.00 2.41
2319 4366 1.208535 TCGGCAAGGGATAATCGTGTT 59.791 47.619 0.00 0.00 0.00 3.32
2320 4367 0.828022 TCGGCAAGGGATAATCGTGT 59.172 50.000 0.00 0.00 0.00 4.49
2401 4448 8.845413 TTTCTGGCATTTAGTTTGCATAAAAT 57.155 26.923 0.00 0.00 41.95 1.82
2402 4449 8.668510 TTTTCTGGCATTTAGTTTGCATAAAA 57.331 26.923 0.00 0.00 41.95 1.52
2403 4450 8.555361 GTTTTTCTGGCATTTAGTTTGCATAAA 58.445 29.630 0.00 0.00 41.95 1.40
2404 4451 7.930865 AGTTTTTCTGGCATTTAGTTTGCATAA 59.069 29.630 0.00 0.00 41.95 1.90
2405 4452 7.441017 AGTTTTTCTGGCATTTAGTTTGCATA 58.559 30.769 0.00 0.00 41.95 3.14
2427 4474 8.648097 GTTTGATATCGTATCATCGCATTAGTT 58.352 33.333 8.03 0.00 0.00 2.24
2569 4632 1.420138 TCACAACCTGGGGAAGTTCTC 59.580 52.381 2.25 0.00 0.00 2.87
2639 4702 7.832503 ATTTTTGTGGCTATTGTTCTTATGC 57.167 32.000 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.