Multiple sequence alignment - TraesCS4D01G186800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G186800 chr4D 100.000 8045 0 0 1 8045 324223322 324231366 0.000000e+00 14857.0
1 TraesCS4D01G186800 chr4D 94.138 290 17 0 7748 8037 484820447 484820736 7.410000e-120 442.0
2 TraesCS4D01G186800 chr4A 92.234 2601 141 35 728 3278 147304862 147302273 0.000000e+00 3627.0
3 TraesCS4D01G186800 chr4A 94.097 1728 49 21 5573 7286 147299977 147298289 0.000000e+00 2577.0
4 TraesCS4D01G186800 chr4A 97.527 1132 27 1 3314 4444 147302266 147301135 0.000000e+00 1934.0
5 TraesCS4D01G186800 chr4A 91.309 955 63 14 4520 5466 147301143 147300201 0.000000e+00 1286.0
6 TraesCS4D01G186800 chr4A 95.681 602 23 3 7444 8045 85054029 85054627 0.000000e+00 965.0
7 TraesCS4D01G186800 chr4A 93.709 604 36 2 7443 8045 616117061 616116459 0.000000e+00 904.0
8 TraesCS4D01G186800 chr4A 86.306 555 37 18 481 996 147305914 147305360 1.170000e-157 568.0
9 TraesCS4D01G186800 chr4A 88.772 285 24 5 1 282 147320602 147320323 7.730000e-90 342.0
10 TraesCS4D01G186800 chr4A 95.082 61 1 1 7308 7368 147297893 147297835 2.390000e-15 95.3
11 TraesCS4D01G186800 chr4A 98.148 54 1 0 5508 5561 147300202 147300149 2.390000e-15 95.3
12 TraesCS4D01G186800 chr4B 95.532 1880 62 9 5567 7443 404775482 404777342 0.000000e+00 2987.0
13 TraesCS4D01G186800 chr4B 93.958 1804 96 8 1484 3281 404771562 404773358 0.000000e+00 2715.0
14 TraesCS4D01G186800 chr4B 97.953 1026 21 0 3365 4390 404773368 404774393 0.000000e+00 1779.0
15 TraesCS4D01G186800 chr4B 91.193 1215 36 17 330 1487 404770282 404771482 0.000000e+00 1585.0
16 TraesCS4D01G186800 chr4B 91.149 949 67 10 4523 5463 404774414 404775353 0.000000e+00 1271.0
17 TraesCS4D01G186800 chr4B 77.108 913 189 18 6146 7048 404768962 404769864 2.000000e-140 510.0
18 TraesCS4D01G186800 chr4B 95.397 239 5 4 130 364 404770047 404770283 7.620000e-100 375.0
19 TraesCS4D01G186800 chr4B 96.429 56 2 0 5506 5561 404775353 404775408 8.600000e-15 93.5
20 TraesCS4D01G186800 chr4B 89.474 57 6 0 2675 2731 588844472 588844528 1.120000e-08 73.1
21 TraesCS4D01G186800 chr7D 97.342 602 15 1 7444 8045 600750979 600751579 0.000000e+00 1022.0
22 TraesCS4D01G186800 chr7D 96.678 602 19 1 7444 8045 263004720 263005320 0.000000e+00 1000.0
23 TraesCS4D01G186800 chr7D 90.265 113 7 4 4418 4528 543637817 543637927 2.340000e-30 145.0
24 TraesCS4D01G186800 chr7D 91.379 58 5 0 2674 2731 14232052 14231995 6.690000e-11 80.5
25 TraesCS4D01G186800 chr7A 93.532 603 38 1 7443 8045 638136793 638136192 0.000000e+00 896.0
26 TraesCS4D01G186800 chr2A 87.442 430 49 4 2754 3179 432589870 432590298 2.610000e-134 490.0
27 TraesCS4D01G186800 chr2A 90.400 250 21 2 2754 3001 736307179 736307427 7.790000e-85 326.0
28 TraesCS4D01G186800 chr2D 86.618 411 47 4 2774 3181 327621513 327621918 1.590000e-121 448.0
29 TraesCS4D01G186800 chr2D 91.600 250 19 1 2754 3001 604678961 604679210 2.150000e-90 344.0
30 TraesCS4D01G186800 chr2D 91.200 250 19 2 2754 3001 605110021 605110269 3.600000e-88 337.0
31 TraesCS4D01G186800 chr2D 97.753 89 2 0 4437 4525 534925462 534925550 3.890000e-33 154.0
32 TraesCS4D01G186800 chr2D 94.792 96 3 2 4430 4524 302248107 302248013 1.810000e-31 148.0
33 TraesCS4D01G186800 chr2D 92.929 99 7 0 4428 4526 588164114 588164212 2.340000e-30 145.0
34 TraesCS4D01G186800 chr2D 89.655 58 4 2 2675 2731 305911034 305911090 1.120000e-08 73.1
35 TraesCS4D01G186800 chr2D 89.474 57 4 2 2676 2731 305910517 305910572 4.030000e-08 71.3
36 TraesCS4D01G186800 chr7B 80.634 568 107 3 7477 8043 601918849 601919414 3.450000e-118 436.0
37 TraesCS4D01G186800 chr7B 87.943 282 34 0 7762 8043 590491565 590491284 4.650000e-87 333.0
38 TraesCS4D01G186800 chr7B 98.864 88 0 1 4440 4527 7562502 7562416 1.080000e-33 156.0
39 TraesCS4D01G186800 chr2B 87.240 384 43 2 2774 3155 396955143 396955522 4.460000e-117 433.0
40 TraesCS4D01G186800 chr2B 98.864 88 1 0 4439 4526 354879124 354879211 3.010000e-34 158.0
41 TraesCS4D01G186800 chr1A 98.837 86 1 0 4440 4525 551582342 551582257 3.890000e-33 154.0
42 TraesCS4D01G186800 chr1A 87.931 58 7 0 2674 2731 522502614 522502671 1.450000e-07 69.4
43 TraesCS4D01G186800 chr5D 97.727 88 2 0 4439 4526 310705265 310705352 1.400000e-32 152.0
44 TraesCS4D01G186800 chr5D 87.931 58 7 0 2674 2731 193144103 193144046 1.450000e-07 69.4
45 TraesCS4D01G186800 chr3B 90.351 114 7 3 4413 4524 53239778 53239889 6.510000e-31 147.0
46 TraesCS4D01G186800 chr3A 73.077 312 60 16 7727 8026 156148986 156149285 1.110000e-13 89.8
47 TraesCS4D01G186800 chr6B 86.111 72 9 1 2660 2731 189358187 189358257 8.660000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G186800 chr4D 324223322 324231366 8044 False 14857.000000 14857 100.000000 1 8045 1 chr4D.!!$F1 8044
1 TraesCS4D01G186800 chr4A 147297835 147305914 8079 True 1454.657143 3627 93.529000 481 7368 7 chr4A.!!$R3 6887
2 TraesCS4D01G186800 chr4A 85054029 85054627 598 False 965.000000 965 95.681000 7444 8045 1 chr4A.!!$F1 601
3 TraesCS4D01G186800 chr4A 616116459 616117061 602 True 904.000000 904 93.709000 7443 8045 1 chr4A.!!$R2 602
4 TraesCS4D01G186800 chr4B 404768962 404777342 8380 False 1414.437500 2987 92.339875 130 7443 8 chr4B.!!$F2 7313
5 TraesCS4D01G186800 chr7D 600750979 600751579 600 False 1022.000000 1022 97.342000 7444 8045 1 chr7D.!!$F3 601
6 TraesCS4D01G186800 chr7D 263004720 263005320 600 False 1000.000000 1000 96.678000 7444 8045 1 chr7D.!!$F1 601
7 TraesCS4D01G186800 chr7A 638136192 638136793 601 True 896.000000 896 93.532000 7443 8045 1 chr7A.!!$R1 602
8 TraesCS4D01G186800 chr7B 601918849 601919414 565 False 436.000000 436 80.634000 7477 8043 1 chr7B.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 1946 0.036164 CCCCCATTTGATCGGCGATA 59.964 55.000 24.05 7.97 0.00 2.92 F
946 1975 0.503117 GTCAAAGTCACACGAGCGAC 59.497 55.000 0.00 0.00 0.00 5.19 F
2440 4388 0.532115 GATGGGTGGGTGAATGTTGC 59.468 55.000 0.00 0.00 0.00 4.17 F
3295 5248 0.179145 GATGCTCACAATGCAGGCAC 60.179 55.000 0.00 0.00 44.04 5.01 F
4255 6209 0.608856 TGCCGATGTTCCACTGCAAT 60.609 50.000 0.00 0.00 0.00 3.56 F
4533 6487 1.135460 CGGAGGGAGTACTCACGAAAC 60.135 57.143 23.91 13.94 38.25 2.78 F
5675 7799 1.535462 ACGATTGGCTTTACTGCACAC 59.465 47.619 0.00 0.00 34.04 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 3706 1.822506 TCGGGTCTCTACTGACACAG 58.177 55.000 0.00 0.00 40.17 3.66 R
2756 4704 2.102252 GGGATGGTGCAAACTTGAAACA 59.898 45.455 0.00 0.00 37.93 2.83 R
4010 5964 0.690192 TCGATTGCCCCTGTTCTCAA 59.310 50.000 0.00 0.00 0.00 3.02 R
4512 6466 0.037303 TTCGTGAGTACTCCCTCCGT 59.963 55.000 20.11 0.00 31.43 4.69 R
5685 7809 0.034059 AGCTAAGCGTGCAGTCTTGT 59.966 50.000 9.87 0.00 0.00 3.16 R
5686 7810 1.151668 AAGCTAAGCGTGCAGTCTTG 58.848 50.000 9.87 3.12 0.00 3.02 R
7054 9181 0.670854 GACGAGGGCACAAGGAGTTC 60.671 60.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.295825 TGAAGGCTTGTCTTTATAAGAAATTCA 57.704 29.630 3.46 0.00 39.67 2.57
34 35 8.443160 TGTCTTTATAAGAAATTCAAGCACTCG 58.557 33.333 0.00 0.00 39.67 4.18
35 36 8.443937 GTCTTTATAAGAAATTCAAGCACTCGT 58.556 33.333 0.00 0.00 39.67 4.18
36 37 8.999431 TCTTTATAAGAAATTCAAGCACTCGTT 58.001 29.630 0.00 0.00 33.83 3.85
37 38 9.612620 CTTTATAAGAAATTCAAGCACTCGTTT 57.387 29.630 0.00 0.00 0.00 3.60
38 39 9.959749 TTTATAAGAAATTCAAGCACTCGTTTT 57.040 25.926 0.00 0.00 0.00 2.43
40 41 5.757850 AGAAATTCAAGCACTCGTTTTCT 57.242 34.783 0.00 0.00 0.00 2.52
41 42 6.136541 AGAAATTCAAGCACTCGTTTTCTT 57.863 33.333 0.00 0.00 30.09 2.52
42 43 6.564328 AGAAATTCAAGCACTCGTTTTCTTT 58.436 32.000 0.00 0.00 30.09 2.52
43 44 6.693113 AGAAATTCAAGCACTCGTTTTCTTTC 59.307 34.615 0.00 0.00 30.09 2.62
45 46 4.955925 TCAAGCACTCGTTTTCTTTCAA 57.044 36.364 0.00 0.00 0.00 2.69
46 47 4.908736 TCAAGCACTCGTTTTCTTTCAAG 58.091 39.130 0.00 0.00 0.00 3.02
47 48 4.634004 TCAAGCACTCGTTTTCTTTCAAGA 59.366 37.500 0.00 0.00 0.00 3.02
64 65 7.386848 TCTTTCAAGAAAATACGTACAAGAGGG 59.613 37.037 0.00 0.00 30.73 4.30
65 66 6.349243 TCAAGAAAATACGTACAAGAGGGA 57.651 37.500 0.00 0.00 0.00 4.20
66 67 6.395629 TCAAGAAAATACGTACAAGAGGGAG 58.604 40.000 0.00 0.00 0.00 4.30
67 68 6.209986 TCAAGAAAATACGTACAAGAGGGAGA 59.790 38.462 0.00 0.00 0.00 3.71
68 69 6.793505 AGAAAATACGTACAAGAGGGAGAT 57.206 37.500 0.00 0.00 0.00 2.75
69 70 7.893124 AGAAAATACGTACAAGAGGGAGATA 57.107 36.000 0.00 0.00 0.00 1.98
70 71 7.942990 AGAAAATACGTACAAGAGGGAGATAG 58.057 38.462 0.00 0.00 0.00 2.08
71 72 7.778853 AGAAAATACGTACAAGAGGGAGATAGA 59.221 37.037 0.00 0.00 0.00 1.98
72 73 7.893124 AAATACGTACAAGAGGGAGATAGAA 57.107 36.000 0.00 0.00 0.00 2.10
73 74 6.880942 ATACGTACAAGAGGGAGATAGAAC 57.119 41.667 0.00 0.00 0.00 3.01
74 75 4.597004 ACGTACAAGAGGGAGATAGAACA 58.403 43.478 0.00 0.00 0.00 3.18
75 76 4.398673 ACGTACAAGAGGGAGATAGAACAC 59.601 45.833 0.00 0.00 0.00 3.32
76 77 4.496010 CGTACAAGAGGGAGATAGAACACG 60.496 50.000 0.00 0.00 0.00 4.49
77 78 3.698289 ACAAGAGGGAGATAGAACACGA 58.302 45.455 0.00 0.00 0.00 4.35
79 80 4.082136 ACAAGAGGGAGATAGAACACGAAC 60.082 45.833 0.00 0.00 0.00 3.95
80 81 3.970842 AGAGGGAGATAGAACACGAACT 58.029 45.455 0.00 0.00 0.00 3.01
81 82 3.949113 AGAGGGAGATAGAACACGAACTC 59.051 47.826 0.00 0.00 0.00 3.01
82 83 3.949113 GAGGGAGATAGAACACGAACTCT 59.051 47.826 0.00 0.00 0.00 3.24
83 84 3.697045 AGGGAGATAGAACACGAACTCTG 59.303 47.826 0.00 0.00 0.00 3.35
86 87 4.381079 GGAGATAGAACACGAACTCTGCTT 60.381 45.833 0.00 0.00 0.00 3.91
87 88 4.739195 AGATAGAACACGAACTCTGCTTC 58.261 43.478 0.00 0.00 0.00 3.86
89 90 2.748605 AGAACACGAACTCTGCTTCTG 58.251 47.619 0.00 0.00 0.00 3.02
90 91 2.101582 AGAACACGAACTCTGCTTCTGT 59.898 45.455 0.00 0.00 0.00 3.41
91 92 1.858091 ACACGAACTCTGCTTCTGTG 58.142 50.000 0.00 0.00 34.08 3.66
92 93 1.137086 ACACGAACTCTGCTTCTGTGT 59.863 47.619 0.00 7.63 35.24 3.72
93 94 2.205074 CACGAACTCTGCTTCTGTGTT 58.795 47.619 0.00 0.00 0.00 3.32
95 96 1.795286 CGAACTCTGCTTCTGTGTTCC 59.205 52.381 10.68 0.00 34.63 3.62
96 97 1.795286 GAACTCTGCTTCTGTGTTCCG 59.205 52.381 0.00 0.00 33.19 4.30
100 101 0.882042 CTGCTTCTGTGTTCCGCTGT 60.882 55.000 0.00 0.00 0.00 4.40
101 102 1.159713 TGCTTCTGTGTTCCGCTGTG 61.160 55.000 0.00 0.00 0.00 3.66
102 103 1.160329 GCTTCTGTGTTCCGCTGTGT 61.160 55.000 0.00 0.00 0.00 3.72
103 104 1.299541 CTTCTGTGTTCCGCTGTGTT 58.700 50.000 0.00 0.00 0.00 3.32
104 105 1.670811 CTTCTGTGTTCCGCTGTGTTT 59.329 47.619 0.00 0.00 0.00 2.83
105 106 1.745232 TCTGTGTTCCGCTGTGTTTT 58.255 45.000 0.00 0.00 0.00 2.43
106 107 1.400142 TCTGTGTTCCGCTGTGTTTTG 59.600 47.619 0.00 0.00 0.00 2.44
107 108 1.132262 CTGTGTTCCGCTGTGTTTTGT 59.868 47.619 0.00 0.00 0.00 2.83
108 109 1.542030 TGTGTTCCGCTGTGTTTTGTT 59.458 42.857 0.00 0.00 0.00 2.83
109 110 1.917303 GTGTTCCGCTGTGTTTTGTTG 59.083 47.619 0.00 0.00 0.00 3.33
110 111 1.542030 TGTTCCGCTGTGTTTTGTTGT 59.458 42.857 0.00 0.00 0.00 3.32
112 113 2.553079 TCCGCTGTGTTTTGTTGTTC 57.447 45.000 0.00 0.00 0.00 3.18
113 114 1.813178 TCCGCTGTGTTTTGTTGTTCA 59.187 42.857 0.00 0.00 0.00 3.18
114 115 2.159448 TCCGCTGTGTTTTGTTGTTCAG 60.159 45.455 0.00 0.00 0.00 3.02
115 116 2.159448 CCGCTGTGTTTTGTTGTTCAGA 60.159 45.455 0.00 0.00 0.00 3.27
116 117 3.489059 CCGCTGTGTTTTGTTGTTCAGAT 60.489 43.478 0.00 0.00 0.00 2.90
117 118 4.260990 CCGCTGTGTTTTGTTGTTCAGATA 60.261 41.667 0.00 0.00 0.00 1.98
118 119 5.270083 CGCTGTGTTTTGTTGTTCAGATAA 58.730 37.500 0.00 0.00 0.00 1.75
120 121 6.075415 CGCTGTGTTTTGTTGTTCAGATAAAG 60.075 38.462 0.00 0.00 0.00 1.85
121 122 6.291796 GCTGTGTTTTGTTGTTCAGATAAAGC 60.292 38.462 0.00 0.00 0.00 3.51
124 125 5.362430 TGTTTTGTTGTTCAGATAAAGCCCT 59.638 36.000 0.00 0.00 0.00 5.19
126 127 4.365514 TGTTGTTCAGATAAAGCCCTCA 57.634 40.909 0.00 0.00 0.00 3.86
127 128 4.922206 TGTTGTTCAGATAAAGCCCTCAT 58.078 39.130 0.00 0.00 0.00 2.90
128 129 4.701651 TGTTGTTCAGATAAAGCCCTCATG 59.298 41.667 0.00 0.00 0.00 3.07
165 1122 5.265191 AGCCTCTTCTAGTCTTGTGTGATA 58.735 41.667 0.00 0.00 0.00 2.15
172 1129 7.339466 TCTTCTAGTCTTGTGTGATAGTGCATA 59.661 37.037 0.00 0.00 0.00 3.14
252 1209 2.359850 GTCCCACCAAGCGCATCA 60.360 61.111 11.47 0.00 0.00 3.07
275 1232 8.712285 TCATTTTCTTAGAAACCGTATCGATT 57.288 30.769 6.93 0.00 0.00 3.34
282 1239 7.977293 TCTTAGAAACCGTATCGATTTGAATCA 59.023 33.333 1.71 0.00 35.11 2.57
300 1257 7.930513 TGAATCATCGTGTGTTATGACTATC 57.069 36.000 0.00 0.00 35.06 2.08
332 1291 0.671781 GCATCGTGGCTTGACAGAGT 60.672 55.000 0.00 0.00 0.00 3.24
416 1403 2.969443 AGCTTCGATTTGTTTGGACG 57.031 45.000 0.00 0.00 0.00 4.79
461 1448 0.535780 GGAAACGACCGGGAAAACCT 60.536 55.000 6.32 0.00 36.97 3.50
462 1449 0.870393 GAAACGACCGGGAAAACCTC 59.130 55.000 6.32 0.00 36.97 3.85
463 1450 0.535780 AAACGACCGGGAAAACCTCC 60.536 55.000 6.32 0.00 44.54 4.30
464 1451 2.433664 CGACCGGGAAAACCTCCG 60.434 66.667 6.32 0.00 46.51 4.63
575 1565 1.059835 GACAGACGCGAGCTTCATTTC 59.940 52.381 15.93 0.00 0.00 2.17
889 1918 1.092921 TATAACGCAAGCCAAGCCGG 61.093 55.000 0.00 0.00 45.62 6.13
917 1946 0.036164 CCCCCATTTGATCGGCGATA 59.964 55.000 24.05 7.97 0.00 2.92
946 1975 0.503117 GTCAAAGTCACACGAGCGAC 59.497 55.000 0.00 0.00 0.00 5.19
1233 3062 1.371558 GGTACGGGATGCCATCTCC 59.628 63.158 3.39 3.58 32.12 3.71
1300 3129 1.004918 GGTCCGGTGTGTTCTGAGG 60.005 63.158 0.00 0.00 0.00 3.86
1385 3244 5.824904 TCAGGTCCTACGAACTTGTATAC 57.175 43.478 0.00 0.00 31.94 1.47
1402 3261 4.328169 TGTATACGTGTGTCAGTAGAGACG 59.672 45.833 0.00 0.00 40.71 4.18
1452 3311 4.612264 TCCTGTGACACTTTAACCCTAC 57.388 45.455 7.20 0.00 0.00 3.18
1453 3312 3.968649 TCCTGTGACACTTTAACCCTACA 59.031 43.478 7.20 0.00 0.00 2.74
1562 3504 1.894466 TCCCCGTTGATTTCACTCGTA 59.106 47.619 4.49 0.00 0.00 3.43
1683 3625 1.069258 GGACCTGGCTATACCGCAC 59.931 63.158 0.00 0.00 43.94 5.34
1737 3680 3.328505 CATTTGGTCATTCAACTTGCCC 58.671 45.455 0.00 0.00 0.00 5.36
1763 3706 8.080083 TGAGAGGTAAAACGTTATTTTCTGAC 57.920 34.615 0.00 0.00 0.00 3.51
1804 3747 6.582295 CCGAAACAGTTTTGATTATCAACCAG 59.418 38.462 14.17 1.58 35.89 4.00
1812 3755 6.381498 TTTGATTATCAACCAGTGACCCTA 57.619 37.500 7.19 0.00 39.72 3.53
1824 3767 5.250774 ACCAGTGACCCTATGACACTTTAAT 59.749 40.000 0.00 0.00 41.93 1.40
2070 4014 3.436496 GCTATACGCATTCTATCCGGAC 58.564 50.000 6.12 0.00 38.92 4.79
2110 4056 8.423349 ACTTTCCATTCAATCATTCAAAGTTCA 58.577 29.630 0.00 0.00 30.47 3.18
2132 4078 5.298276 TCAAACTTGTCTTGAGCGGTAAAAT 59.702 36.000 0.00 0.00 0.00 1.82
2193 4139 7.359431 CGTTATTCACTTACGCTACCTTCAAAA 60.359 37.037 0.00 0.00 0.00 2.44
2201 4147 9.836076 ACTTACGCTACCTTCAAAATTTTATTC 57.164 29.630 2.44 0.00 0.00 1.75
2203 4149 7.222000 ACGCTACCTTCAAAATTTTATTCCA 57.778 32.000 2.44 0.00 0.00 3.53
2440 4388 0.532115 GATGGGTGGGTGAATGTTGC 59.468 55.000 0.00 0.00 0.00 4.17
2476 4424 6.442952 CCTCAACTTCTCGTATGATAGGAAG 58.557 44.000 9.69 9.69 39.19 3.46
2593 4541 4.365514 TGGAGTGGCATACTTCTCAAAA 57.634 40.909 4.70 0.00 40.53 2.44
2598 4546 6.404074 GGAGTGGCATACTTCTCAAAATGAAG 60.404 42.308 4.70 0.00 44.52 3.02
2639 4587 2.872245 ACGTATTGCTGTATCCACATGC 59.128 45.455 0.00 0.00 33.14 4.06
2644 4592 3.625649 TGCTGTATCCACATGCTGTTA 57.374 42.857 0.00 0.00 33.14 2.41
2647 4595 3.185188 GCTGTATCCACATGCTGTTATCG 59.815 47.826 0.00 0.00 33.14 2.92
2756 4704 5.197451 TCCATGTTTCTGTACAACCAGTTT 58.803 37.500 0.00 0.00 34.02 2.66
2778 4726 2.079170 TTCAAGTTTGCACCATCCCA 57.921 45.000 0.00 0.00 0.00 4.37
2867 4815 2.042639 AATCCCCCAGCCATGTGC 60.043 61.111 0.00 0.00 41.71 4.57
2917 4865 6.694445 TTCCCCACATTCCATTTGTAAAAT 57.306 33.333 0.00 0.00 0.00 1.82
2982 4930 3.181439 GGAGATCCAACCCCATTTCTAGG 60.181 52.174 0.00 0.00 35.64 3.02
3005 4953 5.394115 GGCCAATACATTAGGGTTTTCTGTG 60.394 44.000 0.00 0.00 0.00 3.66
3013 4961 7.511268 ACATTAGGGTTTTCTGTGTTGTACTA 58.489 34.615 0.00 0.00 0.00 1.82
3050 4998 1.211457 CTCCAATTCCTCCCCTCACTG 59.789 57.143 0.00 0.00 0.00 3.66
3067 5016 6.403636 CCCTCACTGTCAAAATATCTTTTCCG 60.404 42.308 0.00 0.00 32.21 4.30
3077 5026 0.329596 ATCTTTTCCGGCAAGAGGCT 59.670 50.000 17.78 0.00 44.01 4.58
3131 5084 3.025322 ACACCCAGTTCACCAAAATCA 57.975 42.857 0.00 0.00 0.00 2.57
3150 5103 4.387026 TCATTCCTTCTGGACACCAATT 57.613 40.909 0.00 0.00 43.06 2.32
3171 5124 2.092429 TCCCAGTTGGCAAGGTGATATC 60.092 50.000 0.00 0.00 0.00 1.63
3217 5170 0.779997 AAAGAAGTGGGCCATCTGGT 59.220 50.000 10.70 0.00 37.57 4.00
3226 5179 3.118038 GTGGGCCATCTGGTAGTTGATTA 60.118 47.826 10.70 0.00 37.57 1.75
3235 5188 8.712363 CCATCTGGTAGTTGATTACATTTATCG 58.288 37.037 0.00 0.00 0.00 2.92
3281 5234 2.040813 CCATTAGGTATGCAGGGATGCT 59.959 50.000 1.53 0.00 35.49 3.79
3282 5235 3.341823 CATTAGGTATGCAGGGATGCTC 58.658 50.000 1.53 0.00 35.49 4.26
3283 5236 2.101640 TAGGTATGCAGGGATGCTCA 57.898 50.000 1.53 0.00 35.49 4.26
3284 5237 0.471617 AGGTATGCAGGGATGCTCAC 59.528 55.000 1.53 0.00 35.49 3.51
3285 5238 0.181114 GGTATGCAGGGATGCTCACA 59.819 55.000 1.53 0.00 35.49 3.58
3286 5239 1.408683 GGTATGCAGGGATGCTCACAA 60.409 52.381 1.53 0.00 35.49 3.33
3287 5240 2.579873 GTATGCAGGGATGCTCACAAT 58.420 47.619 1.53 0.00 35.49 2.71
3288 5241 1.399714 ATGCAGGGATGCTCACAATG 58.600 50.000 1.53 0.00 35.49 2.82
3289 5242 1.317431 TGCAGGGATGCTCACAATGC 61.317 55.000 1.53 0.00 35.49 3.56
3290 5243 1.317431 GCAGGGATGCTCACAATGCA 61.317 55.000 0.00 0.00 44.95 3.96
3291 5244 0.738975 CAGGGATGCTCACAATGCAG 59.261 55.000 0.00 0.00 44.04 4.41
3292 5245 0.395311 AGGGATGCTCACAATGCAGG 60.395 55.000 0.00 0.00 44.04 4.85
3293 5246 1.436336 GGATGCTCACAATGCAGGC 59.564 57.895 0.00 0.00 44.04 4.85
3294 5247 1.317431 GGATGCTCACAATGCAGGCA 61.317 55.000 0.00 0.00 44.04 4.75
3295 5248 0.179145 GATGCTCACAATGCAGGCAC 60.179 55.000 0.00 0.00 44.04 5.01
3296 5249 0.896479 ATGCTCACAATGCAGGCACA 60.896 50.000 0.00 0.00 44.04 4.57
3297 5250 0.896479 TGCTCACAATGCAGGCACAT 60.896 50.000 0.00 0.00 35.31 3.21
3298 5251 1.097232 GCTCACAATGCAGGCACATA 58.903 50.000 0.00 0.00 0.00 2.29
3299 5252 1.065102 GCTCACAATGCAGGCACATAG 59.935 52.381 0.00 0.00 0.00 2.23
3300 5253 2.362736 CTCACAATGCAGGCACATAGT 58.637 47.619 0.00 0.00 0.00 2.12
3301 5254 3.534554 CTCACAATGCAGGCACATAGTA 58.465 45.455 0.00 0.00 0.00 1.82
3302 5255 3.940852 CTCACAATGCAGGCACATAGTAA 59.059 43.478 0.00 0.00 0.00 2.24
3303 5256 4.331108 TCACAATGCAGGCACATAGTAAA 58.669 39.130 0.00 0.00 0.00 2.01
3304 5257 4.764308 TCACAATGCAGGCACATAGTAAAA 59.236 37.500 0.00 0.00 0.00 1.52
3305 5258 5.418524 TCACAATGCAGGCACATAGTAAAAT 59.581 36.000 0.00 0.00 0.00 1.82
3306 5259 6.071447 TCACAATGCAGGCACATAGTAAAATT 60.071 34.615 0.00 0.00 0.00 1.82
3307 5260 7.121907 TCACAATGCAGGCACATAGTAAAATTA 59.878 33.333 0.00 0.00 0.00 1.40
3308 5261 7.758980 CACAATGCAGGCACATAGTAAAATTAA 59.241 33.333 0.00 0.00 0.00 1.40
3309 5262 8.477256 ACAATGCAGGCACATAGTAAAATTAAT 58.523 29.630 0.00 0.00 0.00 1.40
3310 5263 9.316730 CAATGCAGGCACATAGTAAAATTAATT 57.683 29.630 0.00 0.00 0.00 1.40
3311 5264 9.889128 AATGCAGGCACATAGTAAAATTAATTT 57.111 25.926 7.64 7.64 34.92 1.82
3312 5265 8.700722 TGCAGGCACATAGTAAAATTAATTTG 57.299 30.769 14.04 4.20 32.27 2.32
3361 5315 7.141758 TCCAGCCAGAGATGTTTCTAATTAT 57.858 36.000 0.00 0.00 30.30 1.28
3462 5416 4.677182 AGACCCCAATTAGCAACAGAAAT 58.323 39.130 0.00 0.00 0.00 2.17
3547 5501 7.778470 AACTTGTGTTTTCAAAGTTCAAACA 57.222 28.000 4.61 4.61 36.96 2.83
3562 5516 9.545105 AAAGTTCAAACATTCAATAGATTTGCA 57.455 25.926 0.00 0.00 31.71 4.08
3607 5561 7.308830 GCAGAAATCACCTTGAAGACAGTAATT 60.309 37.037 0.00 0.00 0.00 1.40
3665 5619 8.162878 ACTATTTCGTGCTAGCTAATACTACA 57.837 34.615 17.23 0.00 0.00 2.74
4010 5964 0.700564 TTCAGCCCTCCAAGATGCTT 59.299 50.000 0.00 0.00 30.08 3.91
4255 6209 0.608856 TGCCGATGTTCCACTGCAAT 60.609 50.000 0.00 0.00 0.00 3.56
4375 6329 6.831976 AGACCTTCTTACTGTGAAATGTCTT 58.168 36.000 0.00 0.00 34.67 3.01
4443 6397 9.967346 TTTAGAATGTACACATATGAGCTACTC 57.033 33.333 10.38 2.95 35.10 2.59
4444 6398 6.987386 AGAATGTACACATATGAGCTACTCC 58.013 40.000 10.38 2.29 35.10 3.85
4445 6399 5.730296 ATGTACACATATGAGCTACTCCC 57.270 43.478 10.38 0.00 34.26 4.30
4446 6400 4.804597 TGTACACATATGAGCTACTCCCT 58.195 43.478 10.38 0.00 0.00 4.20
4447 6401 4.827835 TGTACACATATGAGCTACTCCCTC 59.172 45.833 10.38 0.00 0.00 4.30
4448 6402 4.191804 ACACATATGAGCTACTCCCTCT 57.808 45.455 10.38 0.00 0.00 3.69
4449 6403 3.894427 ACACATATGAGCTACTCCCTCTG 59.106 47.826 10.38 0.00 0.00 3.35
4450 6404 3.894427 CACATATGAGCTACTCCCTCTGT 59.106 47.826 10.38 0.00 0.00 3.41
4451 6405 5.073428 CACATATGAGCTACTCCCTCTGTA 58.927 45.833 10.38 0.00 0.00 2.74
4452 6406 5.536538 CACATATGAGCTACTCCCTCTGTAA 59.463 44.000 10.38 0.00 0.00 2.41
4453 6407 6.040955 CACATATGAGCTACTCCCTCTGTAAA 59.959 42.308 10.38 0.00 0.00 2.01
4454 6408 6.266558 ACATATGAGCTACTCCCTCTGTAAAG 59.733 42.308 10.38 0.00 0.00 1.85
4455 6409 4.317530 TGAGCTACTCCCTCTGTAAAGA 57.682 45.455 0.00 0.00 0.00 2.52
4456 6410 4.673968 TGAGCTACTCCCTCTGTAAAGAA 58.326 43.478 0.00 0.00 0.00 2.52
4457 6411 5.084519 TGAGCTACTCCCTCTGTAAAGAAA 58.915 41.667 0.00 0.00 0.00 2.52
4458 6412 5.721960 TGAGCTACTCCCTCTGTAAAGAAAT 59.278 40.000 0.00 0.00 0.00 2.17
4459 6413 6.895756 TGAGCTACTCCCTCTGTAAAGAAATA 59.104 38.462 0.00 0.00 0.00 1.40
4460 6414 7.565398 TGAGCTACTCCCTCTGTAAAGAAATAT 59.435 37.037 0.00 0.00 0.00 1.28
4461 6415 9.080097 GAGCTACTCCCTCTGTAAAGAAATATA 57.920 37.037 0.00 0.00 0.00 0.86
4462 6416 9.435570 AGCTACTCCCTCTGTAAAGAAATATAA 57.564 33.333 0.00 0.00 0.00 0.98
4463 6417 9.699703 GCTACTCCCTCTGTAAAGAAATATAAG 57.300 37.037 0.00 0.00 0.00 1.73
4466 6420 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4467 6421 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4468 6422 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4469 6423 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4470 6424 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4487 6441 8.635877 AGAGCGTTTAGATCACTACTTTAATG 57.364 34.615 0.00 0.00 37.82 1.90
4488 6442 8.467598 AGAGCGTTTAGATCACTACTTTAATGA 58.532 33.333 0.00 0.00 37.82 2.57
4489 6443 9.250624 GAGCGTTTAGATCACTACTTTAATGAT 57.749 33.333 0.00 0.00 35.77 2.45
4490 6444 9.250624 AGCGTTTAGATCACTACTTTAATGATC 57.749 33.333 7.60 7.60 46.04 2.92
4498 6452 9.250624 GATCACTACTTTAATGATCTAAACGCT 57.749 33.333 8.21 0.00 43.55 5.07
4499 6453 8.630278 TCACTACTTTAATGATCTAAACGCTC 57.370 34.615 0.00 0.00 0.00 5.03
4500 6454 8.467598 TCACTACTTTAATGATCTAAACGCTCT 58.532 33.333 0.00 0.00 0.00 4.09
4501 6455 9.088512 CACTACTTTAATGATCTAAACGCTCTT 57.911 33.333 0.00 0.00 0.00 2.85
4515 6469 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
4516 6470 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
4517 6471 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4518 6472 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
4519 6473 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
4520 6474 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
4521 6475 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
4533 6487 1.135460 CGGAGGGAGTACTCACGAAAC 60.135 57.143 23.91 13.94 38.25 2.78
4544 6498 3.335579 ACTCACGAAACCTAATGCTTCC 58.664 45.455 0.00 0.00 0.00 3.46
4800 6754 4.900635 ACTTTGAACACTAAACCTGCAG 57.099 40.909 6.78 6.78 0.00 4.41
4805 6759 3.071023 TGAACACTAAACCTGCAGTAGCT 59.929 43.478 13.81 0.00 42.74 3.32
4910 6865 8.648968 CCAAAACTTAGCAAAAGAAAAACGTAA 58.351 29.630 5.89 0.00 0.00 3.18
4964 6919 4.466827 TCAGGCACATAGGTATCGAGTTA 58.533 43.478 0.00 0.00 0.00 2.24
4972 6927 8.538039 GCACATAGGTATCGAGTTAAAACTTAC 58.462 37.037 0.00 0.00 39.88 2.34
5013 6968 7.597369 TCCAAATAATATGACGATTCACTACCG 59.403 37.037 0.00 0.00 33.38 4.02
5023 6978 5.667466 ACGATTCACTACCGGTATGAAAAT 58.333 37.500 27.85 19.77 36.03 1.82
5036 6991 9.184523 ACCGGTATGAAAATGATAAAATGAGAA 57.815 29.630 4.49 0.00 0.00 2.87
5056 7011 6.147164 TGAGAATGCTACAGTTTAAGTTTCGG 59.853 38.462 0.00 0.00 0.00 4.30
5065 7020 9.807386 CTACAGTTTAAGTTTCGGAACATAAAG 57.193 33.333 15.43 8.91 38.71 1.85
5088 7043 8.854614 AAGTGTAGCACTATCATTTTCTCTTT 57.145 30.769 1.97 0.00 44.62 2.52
5089 7044 8.854614 AGTGTAGCACTATCATTTTCTCTTTT 57.145 30.769 0.00 0.00 43.46 2.27
5121 7076 7.765695 AGGTTACAGATGGCCATATTATTTG 57.234 36.000 20.84 12.44 0.00 2.32
5124 7079 7.230510 GGTTACAGATGGCCATATTATTTGACA 59.769 37.037 20.84 2.39 0.00 3.58
5125 7080 6.639632 ACAGATGGCCATATTATTTGACAC 57.360 37.500 20.84 0.81 0.00 3.67
5129 7084 8.145767 CAGATGGCCATATTATTTGACACAAAT 58.854 33.333 20.84 13.00 0.00 2.32
5131 7086 9.328845 GATGGCCATATTATTTGACACAAATTT 57.671 29.630 20.84 0.00 0.00 1.82
5133 7088 9.593134 TGGCCATATTATTTGACACAAATTTAC 57.407 29.630 0.00 0.68 0.00 2.01
5146 7101 7.940137 TGACACAAATTTACTACATGGGTAAGT 59.060 33.333 11.45 7.82 31.94 2.24
5175 7130 7.480760 AACAAATACCTATCTGCATGGTTTT 57.519 32.000 6.23 3.25 35.48 2.43
5230 7185 3.826157 TCTGCCAAGTTTTATGAAGTGGG 59.174 43.478 0.00 0.00 0.00 4.61
5271 7229 4.779993 AAATCCTCTCCCACCAAGATAC 57.220 45.455 0.00 0.00 0.00 2.24
5274 7232 3.041211 TCCTCTCCCACCAAGATACATG 58.959 50.000 0.00 0.00 0.00 3.21
5279 7237 4.782691 TCTCCCACCAAGATACATGAAAGA 59.217 41.667 0.00 0.00 0.00 2.52
5282 7240 5.250543 TCCCACCAAGATACATGAAAGAAGA 59.749 40.000 0.00 0.00 0.00 2.87
5302 7260 2.208132 TAAAAAGGATGGCCTCGCAA 57.792 45.000 3.32 0.00 46.28 4.85
5428 7389 8.156820 TGTAGATCATCTTTCTTTTTCACTGGA 58.843 33.333 0.00 0.00 0.00 3.86
5443 7404 2.235650 CACTGGAAGCTTCTGATGGAGA 59.764 50.000 25.05 0.25 37.60 3.71
5448 7409 4.165565 TGGAAGCTTCTGATGGAGATTCAT 59.834 41.667 25.05 0.00 0.00 2.57
5449 7410 4.515944 GGAAGCTTCTGATGGAGATTCATG 59.484 45.833 25.05 0.00 0.00 3.07
5462 7423 6.855836 TGGAGATTCATGTAAACAAATGCTC 58.144 36.000 0.00 0.00 0.00 4.26
5463 7424 6.433716 TGGAGATTCATGTAAACAAATGCTCA 59.566 34.615 0.00 0.00 0.00 4.26
5464 7425 7.123098 TGGAGATTCATGTAAACAAATGCTCAT 59.877 33.333 0.00 0.00 0.00 2.90
5465 7426 7.977853 GGAGATTCATGTAAACAAATGCTCATT 59.022 33.333 0.00 0.00 0.00 2.57
5466 7427 9.362539 GAGATTCATGTAAACAAATGCTCATTT 57.637 29.630 2.24 2.24 41.33 2.32
5478 7439 6.973229 AAATGCTCATTTGTAAATTGCCTC 57.027 33.333 7.01 0.00 39.36 4.70
5479 7440 4.454728 TGCTCATTTGTAAATTGCCTCC 57.545 40.909 8.58 0.00 0.00 4.30
5480 7441 3.195396 TGCTCATTTGTAAATTGCCTCCC 59.805 43.478 8.58 0.00 0.00 4.30
5481 7442 3.195396 GCTCATTTGTAAATTGCCTCCCA 59.805 43.478 0.00 0.00 0.00 4.37
5482 7443 4.678840 GCTCATTTGTAAATTGCCTCCCAG 60.679 45.833 0.00 0.00 0.00 4.45
5483 7444 4.671831 TCATTTGTAAATTGCCTCCCAGA 58.328 39.130 0.00 0.00 0.00 3.86
5484 7445 5.271598 TCATTTGTAAATTGCCTCCCAGAT 58.728 37.500 0.00 0.00 0.00 2.90
5485 7446 6.430864 TCATTTGTAAATTGCCTCCCAGATA 58.569 36.000 0.00 0.00 0.00 1.98
5486 7447 6.894654 TCATTTGTAAATTGCCTCCCAGATAA 59.105 34.615 0.00 0.00 0.00 1.75
5487 7448 7.398618 TCATTTGTAAATTGCCTCCCAGATAAA 59.601 33.333 0.00 0.00 0.00 1.40
5488 7449 7.546250 TTTGTAAATTGCCTCCCAGATAAAA 57.454 32.000 0.00 0.00 0.00 1.52
5489 7450 7.732222 TTGTAAATTGCCTCCCAGATAAAAT 57.268 32.000 0.00 0.00 0.00 1.82
5490 7451 7.111247 TGTAAATTGCCTCCCAGATAAAATG 57.889 36.000 0.00 0.00 0.00 2.32
5491 7452 6.894654 TGTAAATTGCCTCCCAGATAAAATGA 59.105 34.615 0.00 0.00 0.00 2.57
5492 7453 6.872585 AAATTGCCTCCCAGATAAAATGAA 57.127 33.333 0.00 0.00 0.00 2.57
5493 7454 5.859205 ATTGCCTCCCAGATAAAATGAAC 57.141 39.130 0.00 0.00 0.00 3.18
5494 7455 3.631250 TGCCTCCCAGATAAAATGAACC 58.369 45.455 0.00 0.00 0.00 3.62
5495 7456 2.618709 GCCTCCCAGATAAAATGAACCG 59.381 50.000 0.00 0.00 0.00 4.44
5496 7457 3.886123 CCTCCCAGATAAAATGAACCGT 58.114 45.455 0.00 0.00 0.00 4.83
5497 7458 3.627577 CCTCCCAGATAAAATGAACCGTG 59.372 47.826 0.00 0.00 0.00 4.94
5498 7459 4.513442 CTCCCAGATAAAATGAACCGTGA 58.487 43.478 0.00 0.00 0.00 4.35
5499 7460 4.912586 TCCCAGATAAAATGAACCGTGAA 58.087 39.130 0.00 0.00 0.00 3.18
5500 7461 4.941263 TCCCAGATAAAATGAACCGTGAAG 59.059 41.667 0.00 0.00 0.00 3.02
5501 7462 4.941263 CCCAGATAAAATGAACCGTGAAGA 59.059 41.667 0.00 0.00 0.00 2.87
5502 7463 5.163754 CCCAGATAAAATGAACCGTGAAGAC 60.164 44.000 0.00 0.00 0.00 3.01
5503 7464 5.445939 CCAGATAAAATGAACCGTGAAGACG 60.446 44.000 0.00 0.00 45.67 4.18
5657 7781 2.772568 TGCCAACTTGATGTTCAACG 57.227 45.000 0.00 0.00 36.63 4.10
5660 7784 3.317711 TGCCAACTTGATGTTCAACGATT 59.682 39.130 0.00 0.00 36.63 3.34
5662 7786 4.229096 CCAACTTGATGTTCAACGATTGG 58.771 43.478 0.00 7.96 36.63 3.16
5663 7787 3.559238 ACTTGATGTTCAACGATTGGC 57.441 42.857 0.00 0.00 32.21 4.52
5664 7788 3.149196 ACTTGATGTTCAACGATTGGCT 58.851 40.909 0.00 0.00 32.21 4.75
5668 7792 5.041951 TGATGTTCAACGATTGGCTTTAC 57.958 39.130 0.00 0.00 0.00 2.01
5670 7794 4.481930 TGTTCAACGATTGGCTTTACTG 57.518 40.909 0.00 0.00 0.00 2.74
5671 7795 3.234386 GTTCAACGATTGGCTTTACTGC 58.766 45.455 0.00 0.00 0.00 4.40
5672 7796 2.499197 TCAACGATTGGCTTTACTGCA 58.501 42.857 0.00 0.00 34.04 4.41
5673 7797 2.225491 TCAACGATTGGCTTTACTGCAC 59.775 45.455 0.00 0.00 34.04 4.57
5674 7798 1.890876 ACGATTGGCTTTACTGCACA 58.109 45.000 0.00 0.00 34.04 4.57
5675 7799 1.535462 ACGATTGGCTTTACTGCACAC 59.465 47.619 0.00 0.00 34.04 3.82
5676 7800 1.806542 CGATTGGCTTTACTGCACACT 59.193 47.619 0.00 0.00 34.04 3.55
5677 7801 2.226437 CGATTGGCTTTACTGCACACTT 59.774 45.455 0.00 0.00 34.04 3.16
5678 7802 3.304659 CGATTGGCTTTACTGCACACTTT 60.305 43.478 0.00 0.00 34.04 2.66
5679 7803 4.620982 GATTGGCTTTACTGCACACTTTT 58.379 39.130 0.00 0.00 34.04 2.27
5680 7804 4.464069 TTGGCTTTACTGCACACTTTTT 57.536 36.364 0.00 0.00 34.04 1.94
5721 7845 7.072030 CGCTTAGCTTATGATTTGTTATCCAC 58.928 38.462 1.76 0.00 0.00 4.02
5831 7955 3.623510 GCCTAGAATGTGTAAGCTTGGAC 59.376 47.826 9.86 5.97 0.00 4.02
5842 7966 6.069905 TGTGTAAGCTTGGACATTAAGGGATA 60.070 38.462 9.86 0.00 0.00 2.59
5859 7983 4.166919 AGGGATATAGCTTGGCTGAACTTT 59.833 41.667 0.00 0.00 40.10 2.66
5894 8021 4.033709 AGTAGGATACACTGAGCCACAAT 58.966 43.478 0.00 0.00 46.26 2.71
5983 8110 5.915196 GTGGCTGAAACAAAGAATCACTTAC 59.085 40.000 0.00 0.00 37.93 2.34
6037 8164 9.974980 GATTTTGAACTTTGAGGGTAAATGTTA 57.025 29.630 0.00 0.00 0.00 2.41
6041 8168 7.891561 TGAACTTTGAGGGTAAATGTTATTGG 58.108 34.615 0.00 0.00 0.00 3.16
6055 8182 4.406456 TGTTATTGGCAACTCACTGGATT 58.594 39.130 0.00 0.00 37.61 3.01
6771 8898 4.016706 GTGTACCTGCACCCGGCT 62.017 66.667 0.00 0.00 45.15 5.52
7054 9181 1.000731 GCAGGATGTGAGCTAGGCTAG 59.999 57.143 17.33 17.33 37.48 3.42
7147 9284 8.397906 CCACACTGTATTTTGTTATATCACCTG 58.602 37.037 0.00 0.00 0.00 4.00
7213 9350 3.575630 CTGCTTATCGTGTATATGCCGT 58.424 45.455 0.00 0.00 39.40 5.68
7336 9847 2.753168 GCTCTTTCTTGTGGAGGGGTTT 60.753 50.000 0.00 0.00 0.00 3.27
7376 9887 8.072567 CCTTCAGTTTAGTTGCATATATCTTGC 58.927 37.037 4.08 4.08 40.55 4.01
7393 9904 2.084610 TGCTGATCGAGTTTGTCAGG 57.915 50.000 13.37 0.00 39.71 3.86
7405 9916 5.048713 CGAGTTTGTCAGGAATTAAAAGGCT 60.049 40.000 0.00 0.00 0.00 4.58
7415 9926 6.379417 CAGGAATTAAAAGGCTGGAAAGAGAT 59.621 38.462 0.00 0.00 0.00 2.75
7425 9936 4.396522 GCTGGAAAGAGATAATGCCATCT 58.603 43.478 0.00 0.00 37.99 2.90
7469 9980 2.365582 GGAGACACCAATACGGCATTT 58.634 47.619 0.00 0.00 39.03 2.32
7794 10306 1.271871 TGTTGGGCCATCGTCAAAGAT 60.272 47.619 7.26 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.295825 TGAATTTCTTATAAAGACAAGCCTTCA 57.704 29.630 0.00 0.00 37.23 3.02
3 4 8.246871 GCTTGAATTTCTTATAAAGACAAGCCT 58.753 33.333 20.81 0.00 46.88 4.58
4 5 8.399768 GCTTGAATTTCTTATAAAGACAAGCC 57.600 34.615 20.81 10.74 46.88 4.35
8 9 8.443160 CGAGTGCTTGAATTTCTTATAAAGACA 58.557 33.333 0.00 0.00 37.23 3.41
9 10 8.443937 ACGAGTGCTTGAATTTCTTATAAAGAC 58.556 33.333 0.00 0.00 37.23 3.01
10 11 8.547967 ACGAGTGCTTGAATTTCTTATAAAGA 57.452 30.769 0.00 0.00 35.26 2.52
11 12 9.612620 AAACGAGTGCTTGAATTTCTTATAAAG 57.387 29.630 0.00 0.00 0.00 1.85
12 13 9.959749 AAAACGAGTGCTTGAATTTCTTATAAA 57.040 25.926 0.00 0.00 0.00 1.40
13 14 9.607285 GAAAACGAGTGCTTGAATTTCTTATAA 57.393 29.630 0.00 0.00 0.00 0.98
14 15 8.999431 AGAAAACGAGTGCTTGAATTTCTTATA 58.001 29.630 13.73 0.00 33.87 0.98
15 16 7.875971 AGAAAACGAGTGCTTGAATTTCTTAT 58.124 30.769 13.73 1.52 33.87 1.73
16 17 7.259290 AGAAAACGAGTGCTTGAATTTCTTA 57.741 32.000 13.73 0.00 33.87 2.10
17 18 6.136541 AGAAAACGAGTGCTTGAATTTCTT 57.863 33.333 13.73 5.11 33.87 2.52
19 20 6.472163 TGAAAGAAAACGAGTGCTTGAATTTC 59.528 34.615 0.00 11.11 0.00 2.17
21 22 5.890334 TGAAAGAAAACGAGTGCTTGAATT 58.110 33.333 0.00 0.00 0.00 2.17
23 24 4.955925 TGAAAGAAAACGAGTGCTTGAA 57.044 36.364 0.00 0.00 0.00 2.69
24 25 4.634004 TCTTGAAAGAAAACGAGTGCTTGA 59.366 37.500 0.00 0.00 30.73 3.02
26 27 5.560966 TTCTTGAAAGAAAACGAGTGCTT 57.439 34.783 3.00 0.00 41.75 3.91
37 38 8.770828 CCTCTTGTACGTATTTTCTTGAAAGAA 58.229 33.333 0.00 1.31 42.91 2.52
38 39 7.386848 CCCTCTTGTACGTATTTTCTTGAAAGA 59.613 37.037 0.00 0.00 0.00 2.52
40 41 7.218614 TCCCTCTTGTACGTATTTTCTTGAAA 58.781 34.615 0.00 0.00 0.00 2.69
41 42 6.761312 TCCCTCTTGTACGTATTTTCTTGAA 58.239 36.000 0.00 0.00 0.00 2.69
42 43 6.209986 TCTCCCTCTTGTACGTATTTTCTTGA 59.790 38.462 0.00 0.00 0.00 3.02
43 44 6.395629 TCTCCCTCTTGTACGTATTTTCTTG 58.604 40.000 0.00 0.00 0.00 3.02
45 46 6.793505 ATCTCCCTCTTGTACGTATTTTCT 57.206 37.500 0.00 0.00 0.00 2.52
46 47 7.938715 TCTATCTCCCTCTTGTACGTATTTTC 58.061 38.462 0.00 0.00 0.00 2.29
47 48 7.893124 TCTATCTCCCTCTTGTACGTATTTT 57.107 36.000 0.00 0.00 0.00 1.82
49 50 6.832384 TGTTCTATCTCCCTCTTGTACGTATT 59.168 38.462 0.00 0.00 0.00 1.89
50 51 6.262720 GTGTTCTATCTCCCTCTTGTACGTAT 59.737 42.308 0.00 0.00 0.00 3.06
51 52 5.587844 GTGTTCTATCTCCCTCTTGTACGTA 59.412 44.000 0.00 0.00 0.00 3.57
53 54 4.496010 CGTGTTCTATCTCCCTCTTGTACG 60.496 50.000 0.00 0.00 0.00 3.67
54 55 4.639310 TCGTGTTCTATCTCCCTCTTGTAC 59.361 45.833 0.00 0.00 0.00 2.90
56 57 3.698289 TCGTGTTCTATCTCCCTCTTGT 58.302 45.455 0.00 0.00 0.00 3.16
57 58 4.158764 AGTTCGTGTTCTATCTCCCTCTTG 59.841 45.833 0.00 0.00 0.00 3.02
58 59 4.345854 AGTTCGTGTTCTATCTCCCTCTT 58.654 43.478 0.00 0.00 0.00 2.85
59 60 3.949113 GAGTTCGTGTTCTATCTCCCTCT 59.051 47.826 0.00 0.00 0.00 3.69
61 62 3.697045 CAGAGTTCGTGTTCTATCTCCCT 59.303 47.826 0.00 0.00 0.00 4.20
62 63 3.735514 GCAGAGTTCGTGTTCTATCTCCC 60.736 52.174 0.00 0.00 0.00 4.30
64 65 4.364415 AGCAGAGTTCGTGTTCTATCTC 57.636 45.455 0.00 0.00 0.00 2.75
65 66 4.461081 AGAAGCAGAGTTCGTGTTCTATCT 59.539 41.667 0.00 0.00 0.00 1.98
66 67 4.560819 CAGAAGCAGAGTTCGTGTTCTATC 59.439 45.833 0.00 0.00 0.00 2.08
67 68 4.021894 ACAGAAGCAGAGTTCGTGTTCTAT 60.022 41.667 0.00 0.00 0.00 1.98
68 69 3.318275 ACAGAAGCAGAGTTCGTGTTCTA 59.682 43.478 0.00 0.00 0.00 2.10
69 70 2.101582 ACAGAAGCAGAGTTCGTGTTCT 59.898 45.455 0.00 0.00 0.00 3.01
70 71 2.219674 CACAGAAGCAGAGTTCGTGTTC 59.780 50.000 0.00 0.00 31.80 3.18
71 72 2.205074 CACAGAAGCAGAGTTCGTGTT 58.795 47.619 0.00 0.00 31.80 3.32
72 73 1.137086 ACACAGAAGCAGAGTTCGTGT 59.863 47.619 0.00 0.00 38.34 4.49
73 74 1.858091 ACACAGAAGCAGAGTTCGTG 58.142 50.000 0.00 0.00 37.18 4.35
74 75 2.474816 GAACACAGAAGCAGAGTTCGT 58.525 47.619 0.00 0.00 30.69 3.85
75 76 1.795286 GGAACACAGAAGCAGAGTTCG 59.205 52.381 0.00 0.00 39.45 3.95
76 77 1.795286 CGGAACACAGAAGCAGAGTTC 59.205 52.381 0.00 0.00 38.22 3.01
77 78 1.871080 CGGAACACAGAAGCAGAGTT 58.129 50.000 0.00 0.00 0.00 3.01
79 80 0.320247 AGCGGAACACAGAAGCAGAG 60.320 55.000 0.00 0.00 0.00 3.35
80 81 0.601046 CAGCGGAACACAGAAGCAGA 60.601 55.000 0.00 0.00 0.00 4.26
81 82 0.882042 ACAGCGGAACACAGAAGCAG 60.882 55.000 0.00 0.00 0.00 4.24
82 83 1.146041 ACAGCGGAACACAGAAGCA 59.854 52.632 0.00 0.00 0.00 3.91
83 84 1.160329 ACACAGCGGAACACAGAAGC 61.160 55.000 0.00 0.00 0.00 3.86
86 87 1.400142 CAAAACACAGCGGAACACAGA 59.600 47.619 0.00 0.00 0.00 3.41
87 88 1.132262 ACAAAACACAGCGGAACACAG 59.868 47.619 0.00 0.00 0.00 3.66
89 90 1.917303 CAACAAAACACAGCGGAACAC 59.083 47.619 0.00 0.00 0.00 3.32
90 91 1.542030 ACAACAAAACACAGCGGAACA 59.458 42.857 0.00 0.00 0.00 3.18
91 92 2.271821 ACAACAAAACACAGCGGAAC 57.728 45.000 0.00 0.00 0.00 3.62
92 93 2.229062 TGAACAACAAAACACAGCGGAA 59.771 40.909 0.00 0.00 0.00 4.30
93 94 1.813178 TGAACAACAAAACACAGCGGA 59.187 42.857 0.00 0.00 0.00 5.54
95 96 3.129852 TCTGAACAACAAAACACAGCG 57.870 42.857 0.00 0.00 0.00 5.18
96 97 6.291796 GCTTTATCTGAACAACAAAACACAGC 60.292 38.462 0.00 0.00 0.00 4.40
100 101 5.362430 AGGGCTTTATCTGAACAACAAAACA 59.638 36.000 0.00 0.00 0.00 2.83
101 102 5.842907 AGGGCTTTATCTGAACAACAAAAC 58.157 37.500 0.00 0.00 0.00 2.43
102 103 5.596361 TGAGGGCTTTATCTGAACAACAAAA 59.404 36.000 0.00 0.00 0.00 2.44
103 104 5.136828 TGAGGGCTTTATCTGAACAACAAA 58.863 37.500 0.00 0.00 0.00 2.83
104 105 4.724399 TGAGGGCTTTATCTGAACAACAA 58.276 39.130 0.00 0.00 0.00 2.83
105 106 4.365514 TGAGGGCTTTATCTGAACAACA 57.634 40.909 0.00 0.00 0.00 3.33
106 107 4.096984 CCATGAGGGCTTTATCTGAACAAC 59.903 45.833 0.00 0.00 0.00 3.32
107 108 4.272489 CCATGAGGGCTTTATCTGAACAA 58.728 43.478 0.00 0.00 0.00 2.83
108 109 3.889815 CCATGAGGGCTTTATCTGAACA 58.110 45.455 0.00 0.00 0.00 3.18
131 132 8.973228 AGACTAGAAGAGGCTACACAGCGTAA 62.973 46.154 0.00 0.00 44.27 3.18
132 133 7.600193 AGACTAGAAGAGGCTACACAGCGTA 62.600 48.000 0.00 0.00 44.27 4.42
133 134 6.916848 AGACTAGAAGAGGCTACACAGCGT 62.917 50.000 0.00 0.00 44.27 5.07
165 1122 2.102578 GCCTCCATTTGGTTATGCACT 58.897 47.619 0.00 0.00 36.34 4.40
172 1129 0.469144 ACAACCGCCTCCATTTGGTT 60.469 50.000 0.00 0.00 45.24 3.67
252 1209 9.158233 TCAAATCGATACGGTTTCTAAGAAAAT 57.842 29.630 0.00 0.00 38.14 1.82
275 1232 7.978975 TGATAGTCATAACACACGATGATTCAA 59.021 33.333 0.00 0.00 34.69 2.69
300 1257 6.064846 AGCCACGATGCTAAGAAAATATTG 57.935 37.500 1.67 0.00 40.56 1.90
364 1325 3.304257 CCTTTTTGCAGTCAGTAGCAGTG 60.304 47.826 0.00 0.00 42.39 3.66
365 1326 2.880890 CCTTTTTGCAGTCAGTAGCAGT 59.119 45.455 0.00 0.00 42.39 4.40
366 1327 2.880890 ACCTTTTTGCAGTCAGTAGCAG 59.119 45.455 0.00 0.00 42.39 4.24
367 1328 2.930950 ACCTTTTTGCAGTCAGTAGCA 58.069 42.857 0.00 0.00 39.32 3.49
368 1329 3.632189 CAACCTTTTTGCAGTCAGTAGC 58.368 45.455 0.00 0.00 0.00 3.58
369 1330 3.632189 GCAACCTTTTTGCAGTCAGTAG 58.368 45.455 4.12 0.00 44.34 2.57
370 1331 3.708563 GCAACCTTTTTGCAGTCAGTA 57.291 42.857 4.12 0.00 44.34 2.74
575 1565 0.948623 TCTTGGATTGGACGTGCACG 60.949 55.000 35.99 35.99 46.33 5.34
833 1859 3.147595 TGGGGCGATCGTGGAGAG 61.148 66.667 17.81 0.00 0.00 3.20
834 1860 3.458163 GTGGGGCGATCGTGGAGA 61.458 66.667 17.81 0.00 0.00 3.71
853 1879 1.683943 ATATATGCCATGCCGATGCC 58.316 50.000 0.00 0.00 36.33 4.40
854 1880 3.303329 CGTTATATATGCCATGCCGATGC 60.303 47.826 0.00 0.00 38.26 3.91
857 1884 2.276201 GCGTTATATATGCCATGCCGA 58.724 47.619 0.00 0.00 32.34 5.54
899 1928 1.156736 GTATCGCCGATCAAATGGGG 58.843 55.000 1.25 0.00 39.40 4.96
917 1946 0.107410 TGACTTTGACTTGGCACGGT 60.107 50.000 0.00 0.00 0.00 4.83
956 1994 2.520741 CCCCGCCTCTCTCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
1202 3031 4.446413 GTACCGTGCTCCCGTGGG 62.446 72.222 0.00 0.00 0.00 4.61
1233 3062 1.492599 GGGGAGAAATGGAGGAGAAGG 59.507 57.143 0.00 0.00 0.00 3.46
1271 3100 4.394712 CCGGACCAGAGGCACACC 62.395 72.222 0.00 0.00 0.00 4.16
1275 3104 3.625897 CACACCGGACCAGAGGCA 61.626 66.667 9.46 0.00 0.00 4.75
1385 3244 0.789753 CGCGTCTCTACTGACACACG 60.790 60.000 0.00 0.00 36.82 4.49
1402 3261 7.388290 TGTTTGACAATCAAAATAACTTCGC 57.612 32.000 5.59 0.00 46.53 4.70
1452 3311 5.224888 CACATGGTCAAACTTTGGATTCTG 58.775 41.667 0.00 0.00 0.00 3.02
1453 3312 4.281688 CCACATGGTCAAACTTTGGATTCT 59.718 41.667 0.00 0.00 0.00 2.40
1542 3484 0.682852 ACGAGTGAAATCAACGGGGA 59.317 50.000 13.04 0.00 34.17 4.81
1562 3504 6.996509 ACCAACTGAATTTTATCATGTGCTT 58.003 32.000 0.00 0.00 0.00 3.91
1627 3569 7.116948 CGAACTTGAATCTACACATTTCAGTCT 59.883 37.037 0.00 0.00 31.54 3.24
1714 3656 3.006752 GGCAAGTTGAATGACCAAATGGA 59.993 43.478 7.16 0.00 38.94 3.41
1737 3680 8.221766 GTCAGAAAATAACGTTTTACCTCTCAG 58.778 37.037 5.91 0.00 0.00 3.35
1763 3706 1.822506 TCGGGTCTCTACTGACACAG 58.177 55.000 0.00 0.00 40.17 3.66
1804 3747 5.990668 AGGATTAAAGTGTCATAGGGTCAC 58.009 41.667 0.00 0.00 0.00 3.67
1812 3755 7.410174 TGGGTTCAATAGGATTAAAGTGTCAT 58.590 34.615 0.00 0.00 0.00 3.06
1824 3767 4.770010 GGTCAAACATTGGGTTCAATAGGA 59.230 41.667 0.00 0.00 41.29 2.94
2097 4043 7.825681 TCAAGACAAGTTTGAACTTTGAATGA 58.174 30.769 6.39 6.99 46.52 2.57
2110 4056 5.067283 ACATTTTACCGCTCAAGACAAGTTT 59.933 36.000 0.00 0.00 0.00 2.66
2132 4078 5.988310 TTCCTGACTCTCCGTAAATAACA 57.012 39.130 0.00 0.00 0.00 2.41
2476 4424 4.790765 AAGGAGAAGCTTTTAACATGCC 57.209 40.909 0.00 0.00 0.00 4.40
2601 4549 8.395633 AGCAATACGTGAAACAATATCCTTTAC 58.604 33.333 0.00 0.00 35.74 2.01
2639 4587 9.655769 CCATTCATTCAATAGAAACGATAACAG 57.344 33.333 0.00 0.00 37.29 3.16
2644 4592 6.698008 TGCCATTCATTCAATAGAAACGAT 57.302 33.333 0.00 0.00 37.29 3.73
2647 4595 7.380602 GCTGTATGCCATTCATTCAATAGAAAC 59.619 37.037 0.00 0.00 36.63 2.78
2756 4704 2.102252 GGGATGGTGCAAACTTGAAACA 59.898 45.455 0.00 0.00 37.93 2.83
2778 4726 2.993853 GCTCACTAGCCCAAGCCT 59.006 61.111 0.00 0.00 43.40 4.58
2867 4815 2.119801 AGTGTTAGCTTCTGGCATGG 57.880 50.000 0.00 0.00 44.79 3.66
2917 4865 3.408634 GGCTTTAAGTGCCTCTAACACA 58.591 45.455 12.56 0.00 46.38 3.72
2982 4930 5.185056 ACACAGAAAACCCTAATGTATTGGC 59.815 40.000 0.00 0.00 0.00 4.52
3013 4961 8.639761 GGAATTGGAGAATTCTGATTGATCATT 58.360 33.333 14.00 0.00 44.81 2.57
3037 4985 1.814429 TTTTGACAGTGAGGGGAGGA 58.186 50.000 0.00 0.00 0.00 3.71
3050 4998 5.949735 TCTTGCCGGAAAAGATATTTTGAC 58.050 37.500 5.05 0.00 0.00 3.18
3067 5016 3.377933 GCTCTTCTAGCCTCTTGCC 57.622 57.895 0.00 0.00 46.25 4.52
3150 5103 1.367346 TATCACCTTGCCAACTGGGA 58.633 50.000 0.00 0.00 40.01 4.37
3197 5150 1.180029 CCAGATGGCCCACTTCTTTG 58.820 55.000 0.00 0.00 31.74 2.77
3217 5170 8.458573 AAATGGGCGATAAATGTAATCAACTA 57.541 30.769 0.00 0.00 0.00 2.24
3226 5179 5.413309 TTTCCAAAATGGGCGATAAATGT 57.587 34.783 0.00 0.00 38.32 2.71
3235 5188 7.920151 GGCAATTATTAAATTTCCAAAATGGGC 59.080 33.333 0.00 0.00 38.03 5.36
3281 5234 2.495155 ACTATGTGCCTGCATTGTGA 57.505 45.000 0.00 0.00 34.54 3.58
3282 5235 4.700268 TTTACTATGTGCCTGCATTGTG 57.300 40.909 0.00 0.00 36.03 3.33
3283 5236 5.920193 ATTTTACTATGTGCCTGCATTGT 57.080 34.783 0.00 0.00 38.15 2.71
3284 5237 8.876275 ATTAATTTTACTATGTGCCTGCATTG 57.124 30.769 0.00 0.00 0.00 2.82
3285 5238 9.889128 AAATTAATTTTACTATGTGCCTGCATT 57.111 25.926 7.64 0.00 0.00 3.56
3286 5239 9.316730 CAAATTAATTTTACTATGTGCCTGCAT 57.683 29.630 10.77 0.00 0.00 3.96
3287 5240 7.277539 GCAAATTAATTTTACTATGTGCCTGCA 59.722 33.333 10.77 0.00 0.00 4.41
3288 5241 7.254421 GGCAAATTAATTTTACTATGTGCCTGC 60.254 37.037 21.12 13.48 33.85 4.85
3289 5242 7.224557 GGGCAAATTAATTTTACTATGTGCCTG 59.775 37.037 24.71 8.86 36.54 4.85
3290 5243 7.272244 GGGCAAATTAATTTTACTATGTGCCT 58.728 34.615 24.71 0.00 36.54 4.75
3291 5244 6.481976 GGGGCAAATTAATTTTACTATGTGCC 59.518 38.462 20.60 20.60 35.67 5.01
3292 5245 7.224557 CAGGGGCAAATTAATTTTACTATGTGC 59.775 37.037 10.77 9.27 0.00 4.57
3293 5246 8.257306 ACAGGGGCAAATTAATTTTACTATGTG 58.743 33.333 10.77 5.98 0.00 3.21
3294 5247 8.374184 ACAGGGGCAAATTAATTTTACTATGT 57.626 30.769 10.77 10.34 0.00 2.29
3295 5248 9.965824 CTACAGGGGCAAATTAATTTTACTATG 57.034 33.333 10.77 9.79 0.00 2.23
3296 5249 9.143155 CCTACAGGGGCAAATTAATTTTACTAT 57.857 33.333 10.77 0.03 0.00 2.12
3297 5250 8.337739 TCCTACAGGGGCAAATTAATTTTACTA 58.662 33.333 10.77 0.00 35.41 1.82
3298 5251 7.123697 GTCCTACAGGGGCAAATTAATTTTACT 59.876 37.037 10.77 4.55 40.02 2.24
3299 5252 7.262772 GTCCTACAGGGGCAAATTAATTTTAC 58.737 38.462 10.77 6.45 40.02 2.01
3300 5253 7.412853 GTCCTACAGGGGCAAATTAATTTTA 57.587 36.000 10.77 0.00 40.02 1.52
3301 5254 6.294361 GTCCTACAGGGGCAAATTAATTTT 57.706 37.500 10.77 0.00 40.02 1.82
3302 5255 5.932619 GTCCTACAGGGGCAAATTAATTT 57.067 39.130 7.64 7.64 40.02 1.82
3451 5405 6.108015 TCTTTTGCTCAAAATTTCTGTTGCT 58.892 32.000 8.07 0.00 39.29 3.91
3536 5490 9.545105 TGCAAATCTATTGAATGTTTGAACTTT 57.455 25.926 13.12 0.00 32.93 2.66
3568 5522 6.373774 AGGTGATTTCTGCAGTTAATCTTCTG 59.626 38.462 28.05 1.55 35.12 3.02
3665 5619 9.597170 CATAACAGAATATACTCTATGCATGCT 57.403 33.333 20.33 7.07 0.00 3.79
4010 5964 0.690192 TCGATTGCCCCTGTTCTCAA 59.310 50.000 0.00 0.00 0.00 3.02
4255 6209 1.140852 GTCCATGTATAGCACCAGCCA 59.859 52.381 0.00 0.00 43.56 4.75
4375 6329 4.374689 TCTGTGCCAGGGTTTATGTTAA 57.625 40.909 2.86 0.00 31.51 2.01
4440 6394 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
4441 6395 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
4442 6396 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
4443 6397 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4444 6398 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4461 6415 9.088512 CATTAAAGTAGTGATCTAAACGCTCTT 57.911 33.333 0.00 0.00 0.00 2.85
4462 6416 8.467598 TCATTAAAGTAGTGATCTAAACGCTCT 58.532 33.333 0.00 0.00 0.00 4.09
4463 6417 8.630278 TCATTAAAGTAGTGATCTAAACGCTC 57.370 34.615 0.00 0.00 0.00 5.03
4464 6418 9.250624 GATCATTAAAGTAGTGATCTAAACGCT 57.749 33.333 11.46 0.00 44.08 5.07
4472 6426 9.250624 AGCGTTTAGATCATTAAAGTAGTGATC 57.749 33.333 10.99 10.99 46.33 2.92
4473 6427 9.250624 GAGCGTTTAGATCATTAAAGTAGTGAT 57.749 33.333 0.00 0.00 37.77 3.06
4474 6428 8.467598 AGAGCGTTTAGATCATTAAAGTAGTGA 58.532 33.333 0.00 0.00 37.82 3.41
4475 6429 8.635877 AGAGCGTTTAGATCATTAAAGTAGTG 57.364 34.615 0.00 0.00 37.82 2.74
4489 6443 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
4490 6444 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
4491 6445 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
4492 6446 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
4493 6447 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4494 6448 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4495 6449 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4496 6450 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4497 6451 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4498 6452 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4499 6453 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
4500 6454 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4501 6455 8.000709 TGAGTACTCCCTCCGTAAAGAAATATA 58.999 37.037 20.11 0.00 0.00 0.86
4502 6456 6.837568 TGAGTACTCCCTCCGTAAAGAAATAT 59.162 38.462 20.11 0.00 0.00 1.28
4503 6457 6.096001 GTGAGTACTCCCTCCGTAAAGAAATA 59.904 42.308 20.11 0.00 0.00 1.40
4504 6458 5.021458 TGAGTACTCCCTCCGTAAAGAAAT 58.979 41.667 20.11 0.00 0.00 2.17
4505 6459 4.219288 GTGAGTACTCCCTCCGTAAAGAAA 59.781 45.833 20.11 0.00 0.00 2.52
4506 6460 3.760684 GTGAGTACTCCCTCCGTAAAGAA 59.239 47.826 20.11 0.00 0.00 2.52
4507 6461 3.350833 GTGAGTACTCCCTCCGTAAAGA 58.649 50.000 20.11 0.00 0.00 2.52
4508 6462 2.097142 CGTGAGTACTCCCTCCGTAAAG 59.903 54.545 20.11 0.00 0.00 1.85
4509 6463 2.086869 CGTGAGTACTCCCTCCGTAAA 58.913 52.381 20.11 0.00 0.00 2.01
4510 6464 1.278985 TCGTGAGTACTCCCTCCGTAA 59.721 52.381 20.11 0.00 31.43 3.18
4511 6465 0.904649 TCGTGAGTACTCCCTCCGTA 59.095 55.000 20.11 0.00 31.43 4.02
4512 6466 0.037303 TTCGTGAGTACTCCCTCCGT 59.963 55.000 20.11 0.00 31.43 4.69
4513 6467 1.135460 GTTTCGTGAGTACTCCCTCCG 60.135 57.143 20.11 15.61 0.00 4.63
4514 6468 1.204231 GGTTTCGTGAGTACTCCCTCC 59.796 57.143 20.11 9.90 0.00 4.30
4515 6469 2.169330 AGGTTTCGTGAGTACTCCCTC 58.831 52.381 20.11 9.59 0.00 4.30
4516 6470 2.305858 AGGTTTCGTGAGTACTCCCT 57.694 50.000 20.11 14.33 0.00 4.20
4517 6471 4.430908 CATTAGGTTTCGTGAGTACTCCC 58.569 47.826 20.11 12.31 0.00 4.30
4518 6472 3.864003 GCATTAGGTTTCGTGAGTACTCC 59.136 47.826 20.11 10.38 0.00 3.85
4519 6473 4.745649 AGCATTAGGTTTCGTGAGTACTC 58.254 43.478 16.32 16.32 0.00 2.59
4520 6474 4.803098 AGCATTAGGTTTCGTGAGTACT 57.197 40.909 0.00 0.00 0.00 2.73
4521 6475 4.329256 GGAAGCATTAGGTTTCGTGAGTAC 59.671 45.833 0.00 0.00 37.58 2.73
4533 6487 4.827284 ACAAATATTCCCGGAAGCATTAGG 59.173 41.667 0.73 6.65 0.00 2.69
4588 6542 2.292569 TCGTGGTCTCACACTTACTGTC 59.707 50.000 0.00 0.00 43.79 3.51
4598 6552 1.478510 ACCAGATCATCGTGGTCTCAC 59.521 52.381 0.00 0.00 44.07 3.51
4711 6665 7.374272 AGTATTCATACTCAATGACTCGATGG 58.626 38.462 0.00 0.00 44.42 3.51
4800 6754 5.718649 TTTATGATTCAACTGCGAGCTAC 57.281 39.130 0.00 0.00 0.00 3.58
4910 6865 8.348285 TCCAGAATTTTCCGAAAACATAGAAT 57.652 30.769 8.46 0.00 32.37 2.40
4945 6900 6.047231 AGTTTTAACTCGATACCTATGTGCC 58.953 40.000 0.00 0.00 32.86 5.01
4964 6919 8.929487 TGGAGAAATTTTACATGGGTAAGTTTT 58.071 29.630 0.00 0.00 40.40 2.43
4989 6944 7.384115 ACCGGTAGTGAATCGTCATATTATTTG 59.616 37.037 4.49 0.00 35.80 2.32
5002 6957 7.730364 ATCATTTTCATACCGGTAGTGAATC 57.270 36.000 26.19 0.00 32.48 2.52
5005 6960 9.621629 ATTTTATCATTTTCATACCGGTAGTGA 57.378 29.630 20.91 18.86 0.00 3.41
5006 6961 9.663904 CATTTTATCATTTTCATACCGGTAGTG 57.336 33.333 20.91 17.01 0.00 2.74
5007 6962 9.621629 TCATTTTATCATTTTCATACCGGTAGT 57.378 29.630 20.91 5.62 0.00 2.73
5036 6991 5.761234 TGTTCCGAAACTTAAACTGTAGCAT 59.239 36.000 0.00 0.00 36.30 3.79
5041 6996 8.126700 CACTTTATGTTCCGAAACTTAAACTGT 58.873 33.333 2.15 0.00 38.79 3.55
5088 7043 6.964464 TGGCCATCTGTAACCTAGATAAAAA 58.036 36.000 0.00 0.00 33.30 1.94
5089 7044 6.569127 TGGCCATCTGTAACCTAGATAAAA 57.431 37.500 0.00 0.00 33.30 1.52
5105 7060 8.891671 AATTTGTGTCAAATAATATGGCCATC 57.108 30.769 24.80 4.76 0.00 3.51
5121 7076 8.331730 ACTTACCCATGTAGTAAATTTGTGTC 57.668 34.615 0.00 0.00 29.68 3.67
5124 7079 9.582648 AGAAACTTACCCATGTAGTAAATTTGT 57.417 29.630 13.69 9.13 31.42 2.83
5146 7101 8.052748 ACCATGCAGATAGGTATTTGTTAGAAA 58.947 33.333 0.00 0.00 32.92 2.52
5187 7142 9.638239 GGCAGAAAATGTATTTCTATGTTTTGA 57.362 29.630 3.35 0.00 36.69 2.69
5230 7185 1.482748 TTGGGACCTGGGTACGGAAC 61.483 60.000 0.00 0.00 0.00 3.62
5271 7229 6.982724 GGCCATCCTTTTTATCTTCTTTCATG 59.017 38.462 0.00 0.00 0.00 3.07
5274 7232 6.458888 CGAGGCCATCCTTTTTATCTTCTTTC 60.459 42.308 5.01 0.00 44.46 2.62
5279 7237 2.952310 GCGAGGCCATCCTTTTTATCTT 59.048 45.455 5.01 0.00 44.46 2.40
5282 7240 2.435372 TGCGAGGCCATCCTTTTTAT 57.565 45.000 5.01 0.00 44.46 1.40
5327 7285 4.779696 TGCAGACAGGTATTGCATTGATA 58.220 39.130 6.91 0.00 42.41 2.15
5329 7287 3.070476 TGCAGACAGGTATTGCATTGA 57.930 42.857 6.91 0.00 42.41 2.57
5330 7288 3.853831 TTGCAGACAGGTATTGCATTG 57.146 42.857 10.61 0.00 46.10 2.82
5331 7289 5.410355 AAATTGCAGACAGGTATTGCATT 57.590 34.783 10.61 6.13 46.10 3.56
5332 7290 6.377996 TCTTAAATTGCAGACAGGTATTGCAT 59.622 34.615 10.61 1.83 46.10 3.96
5333 7291 5.709631 TCTTAAATTGCAGACAGGTATTGCA 59.290 36.000 6.91 6.91 45.28 4.08
5334 7292 6.194796 TCTTAAATTGCAGACAGGTATTGC 57.805 37.500 0.00 2.47 38.30 3.56
5337 7295 8.757982 AATCATCTTAAATTGCAGACAGGTAT 57.242 30.769 0.00 0.00 0.00 2.73
5338 7296 9.109393 GTAATCATCTTAAATTGCAGACAGGTA 57.891 33.333 0.00 0.00 0.00 3.08
5339 7297 7.831193 AGTAATCATCTTAAATTGCAGACAGGT 59.169 33.333 0.00 0.00 0.00 4.00
5340 7298 8.218338 AGTAATCATCTTAAATTGCAGACAGG 57.782 34.615 0.00 0.00 0.00 4.00
5391 7352 5.720371 AGATGATCTACAATTCTCCTCCG 57.280 43.478 0.00 0.00 0.00 4.63
5403 7364 8.553459 TCCAGTGAAAAAGAAAGATGATCTAC 57.447 34.615 0.00 0.00 0.00 2.59
5421 7382 2.235650 CTCCATCAGAAGCTTCCAGTGA 59.764 50.000 22.81 19.28 0.00 3.41
5428 7389 5.113446 ACATGAATCTCCATCAGAAGCTT 57.887 39.130 0.00 0.00 33.62 3.74
5462 7423 5.603170 ATCTGGGAGGCAATTTACAAATG 57.397 39.130 0.00 0.00 0.00 2.32
5463 7424 7.732222 TTTATCTGGGAGGCAATTTACAAAT 57.268 32.000 0.00 0.00 0.00 2.32
5464 7425 7.546250 TTTTATCTGGGAGGCAATTTACAAA 57.454 32.000 0.00 0.00 0.00 2.83
5465 7426 7.398618 TCATTTTATCTGGGAGGCAATTTACAA 59.601 33.333 0.00 0.00 0.00 2.41
5466 7427 6.894654 TCATTTTATCTGGGAGGCAATTTACA 59.105 34.615 0.00 0.00 0.00 2.41
5467 7428 7.346751 TCATTTTATCTGGGAGGCAATTTAC 57.653 36.000 0.00 0.00 0.00 2.01
5468 7429 7.147742 GGTTCATTTTATCTGGGAGGCAATTTA 60.148 37.037 0.00 0.00 0.00 1.40
5469 7430 6.352137 GGTTCATTTTATCTGGGAGGCAATTT 60.352 38.462 0.00 0.00 0.00 1.82
5470 7431 5.129320 GGTTCATTTTATCTGGGAGGCAATT 59.871 40.000 0.00 0.00 0.00 2.32
5471 7432 4.651045 GGTTCATTTTATCTGGGAGGCAAT 59.349 41.667 0.00 0.00 0.00 3.56
5472 7433 4.023291 GGTTCATTTTATCTGGGAGGCAA 58.977 43.478 0.00 0.00 0.00 4.52
5473 7434 3.631250 GGTTCATTTTATCTGGGAGGCA 58.369 45.455 0.00 0.00 0.00 4.75
5474 7435 2.618709 CGGTTCATTTTATCTGGGAGGC 59.381 50.000 0.00 0.00 0.00 4.70
5475 7436 3.627577 CACGGTTCATTTTATCTGGGAGG 59.372 47.826 0.00 0.00 0.00 4.30
5476 7437 4.513442 TCACGGTTCATTTTATCTGGGAG 58.487 43.478 0.00 0.00 0.00 4.30
5477 7438 4.561500 TCACGGTTCATTTTATCTGGGA 57.438 40.909 0.00 0.00 0.00 4.37
5478 7439 4.941263 TCTTCACGGTTCATTTTATCTGGG 59.059 41.667 0.00 0.00 0.00 4.45
5479 7440 5.445939 CGTCTTCACGGTTCATTTTATCTGG 60.446 44.000 0.00 0.00 42.73 3.86
5480 7441 5.550981 CGTCTTCACGGTTCATTTTATCTG 58.449 41.667 0.00 0.00 42.73 2.90
5481 7442 5.779806 CGTCTTCACGGTTCATTTTATCT 57.220 39.130 0.00 0.00 42.73 1.98
5494 7455 1.970917 GCATCAAGGCCGTCTTCACG 61.971 60.000 0.00 0.00 46.29 4.35
5495 7456 1.648467 GGCATCAAGGCCGTCTTCAC 61.648 60.000 0.00 0.00 45.40 3.18
5496 7457 1.377202 GGCATCAAGGCCGTCTTCA 60.377 57.895 0.00 0.00 45.40 3.02
5497 7458 3.502572 GGCATCAAGGCCGTCTTC 58.497 61.111 0.00 0.00 45.40 2.87
5504 7465 2.754552 TCACATACAAAGGCATCAAGGC 59.245 45.455 0.00 0.00 44.61 4.35
5571 7692 7.930865 TCCAAATTCCAAAGTTTTCAACCTATG 59.069 33.333 0.00 0.00 0.00 2.23
5587 7708 1.133199 ACAGCAAGGGTCCAAATTCCA 60.133 47.619 0.00 0.00 0.00 3.53
5657 7781 3.923017 AAGTGTGCAGTAAAGCCAATC 57.077 42.857 0.00 0.00 0.00 2.67
5679 7803 4.364415 AAGCGTGCAGTCTTGTTAAAAA 57.636 36.364 0.00 0.00 0.00 1.94
5680 7804 4.553938 GCTAAGCGTGCAGTCTTGTTAAAA 60.554 41.667 9.87 0.00 0.00 1.52
5681 7805 3.059188 GCTAAGCGTGCAGTCTTGTTAAA 60.059 43.478 9.87 0.00 0.00 1.52
5682 7806 2.478894 GCTAAGCGTGCAGTCTTGTTAA 59.521 45.455 9.87 0.00 0.00 2.01
5683 7807 2.066262 GCTAAGCGTGCAGTCTTGTTA 58.934 47.619 9.87 0.00 0.00 2.41
5684 7808 0.868406 GCTAAGCGTGCAGTCTTGTT 59.132 50.000 9.87 0.00 0.00 2.83
5685 7809 0.034059 AGCTAAGCGTGCAGTCTTGT 59.966 50.000 9.87 0.00 0.00 3.16
5686 7810 1.151668 AAGCTAAGCGTGCAGTCTTG 58.848 50.000 9.87 3.12 0.00 3.02
5687 7811 2.743636 TAAGCTAAGCGTGCAGTCTT 57.256 45.000 5.79 5.79 0.00 3.01
5688 7812 2.166459 TCATAAGCTAAGCGTGCAGTCT 59.834 45.455 0.00 0.00 0.00 3.24
5689 7813 2.540515 TCATAAGCTAAGCGTGCAGTC 58.459 47.619 0.00 0.00 0.00 3.51
5721 7845 5.869753 AGCAAGTTCTTGTTACTAGCATG 57.130 39.130 13.04 0.00 0.00 4.06
5831 7955 5.809001 TCAGCCAAGCTATATCCCTTAATG 58.191 41.667 0.00 0.00 36.40 1.90
6037 8164 5.263599 TGAATAATCCAGTGAGTTGCCAAT 58.736 37.500 0.00 0.00 0.00 3.16
6041 8168 6.690194 AGAATGAATAATCCAGTGAGTTGC 57.310 37.500 0.00 0.00 0.00 4.17
6347 8474 3.501349 AGGCCATACGTATGAGAGACAT 58.499 45.455 32.19 13.52 42.39 3.06
6627 8754 2.760477 CCGGAATGGAACCACCCA 59.240 61.111 0.00 0.00 42.00 4.51
7054 9181 0.670854 GACGAGGGCACAAGGAGTTC 60.671 60.000 0.00 0.00 0.00 3.01
7147 9284 3.251571 CACCTTAGTTCGTACAGAAGCC 58.748 50.000 0.00 0.00 39.95 4.35
7376 9887 6.968131 TTAATTCCTGACAAACTCGATCAG 57.032 37.500 6.08 6.08 39.70 2.90
7393 9904 9.741647 CATTATCTCTTTCCAGCCTTTTAATTC 57.258 33.333 0.00 0.00 0.00 2.17
7415 9926 5.467738 TCCTTCCTTCTAGAGATGGCATTA 58.532 41.667 0.00 0.00 38.74 1.90
7425 9936 6.377912 CCTCCTTATCTTCCTTCCTTCTAGA 58.622 44.000 0.00 0.00 0.00 2.43
7469 9980 1.596934 GGCGGTGTGGATCTTGAGA 59.403 57.895 0.00 0.00 0.00 3.27
7772 10284 0.466372 TTTGACGATGGCCCAACACA 60.466 50.000 0.00 0.00 0.00 3.72
7794 10306 1.006086 CGAAAGCGGCACATATGTCA 58.994 50.000 5.07 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.