Multiple sequence alignment - TraesCS4D01G186600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G186600 chr4D 100.000 3288 0 0 1 3288 324213125 324216412 0.000000e+00 6072.0
1 TraesCS4D01G186600 chr4D 93.981 216 13 0 2208 2423 439770546 439770761 8.800000e-86 327.0
2 TraesCS4D01G186600 chr4D 91.743 218 18 0 2208 2425 313032315 313032098 1.480000e-78 303.0
3 TraesCS4D01G186600 chr4D 91.031 223 17 2 2208 2429 336657270 336657050 6.900000e-77 298.0
4 TraesCS4D01G186600 chr4A 90.827 1777 72 38 1 1702 147366138 147364378 0.000000e+00 2294.0
5 TraesCS4D01G186600 chr4A 85.599 743 68 10 2569 3284 147363830 147363100 0.000000e+00 743.0
6 TraesCS4D01G186600 chr4A 82.609 460 55 8 2720 3155 4633818 4633360 1.850000e-102 383.0
7 TraesCS4D01G186600 chr4A 97.170 106 3 0 1832 1937 147364246 147364141 2.610000e-41 180.0
8 TraesCS4D01G186600 chr4A 96.875 96 3 0 1702 1797 147364343 147364248 9.440000e-36 161.0
9 TraesCS4D01G186600 chr4B 91.472 856 66 5 2419 3273 404568929 404569778 0.000000e+00 1170.0
10 TraesCS4D01G186600 chr4B 94.407 733 32 5 978 1702 404567810 404568541 0.000000e+00 1118.0
11 TraesCS4D01G186600 chr4B 93.556 419 12 6 562 977 404567371 404567777 7.800000e-171 610.0
12 TraesCS4D01G186600 chr4B 82.961 493 23 20 34 481 404566780 404567256 3.980000e-104 388.0
13 TraesCS4D01G186600 chr4B 85.399 363 22 16 1702 2039 404568573 404568929 6.750000e-92 348.0
14 TraesCS4D01G186600 chr4B 91.403 221 16 3 2208 2428 182177320 182177537 1.920000e-77 300.0
15 TraesCS4D01G186600 chr4B 78.151 119 23 3 2534 2650 110661626 110661509 4.550000e-09 73.1
16 TraesCS4D01G186600 chr3A 82.391 460 56 8 2720 3155 593995335 593994877 8.610000e-101 377.0
17 TraesCS4D01G186600 chr3A 82.391 460 56 8 2720 3155 726315370 726314912 8.610000e-101 377.0
18 TraesCS4D01G186600 chr3A 92.958 213 14 1 2208 2419 319962387 319962599 3.190000e-80 309.0
19 TraesCS4D01G186600 chr3A 89.216 102 9 1 2128 2229 75959562 75959463 3.440000e-25 126.0
20 TraesCS4D01G186600 chr7A 92.070 227 18 0 2193 2419 671487706 671487480 1.470000e-83 320.0
21 TraesCS4D01G186600 chr7A 92.405 79 5 1 2037 2115 561308961 561309038 9.640000e-21 111.0
22 TraesCS4D01G186600 chr3D 93.868 212 13 0 2208 2419 255424467 255424678 1.470000e-83 320.0
23 TraesCS4D01G186600 chr6A 84.691 307 44 2 2849 3155 19472637 19472334 1.480000e-78 303.0
24 TraesCS4D01G186600 chr6A 94.624 93 5 0 2123 2215 11165065 11165157 9.510000e-31 145.0
25 TraesCS4D01G186600 chr6A 88.462 78 9 0 2038 2115 573866721 573866644 9.710000e-16 95.3
26 TraesCS4D01G186600 chr6D 91.403 221 18 1 2208 2428 327021944 327022163 5.330000e-78 302.0
27 TraesCS4D01G186600 chr2B 90.000 230 23 0 2190 2419 158360565 158360794 6.900000e-77 298.0
28 TraesCS4D01G186600 chr2B 87.850 107 11 2 2105 2210 372268292 372268397 1.240000e-24 124.0
29 TraesCS4D01G186600 chr2B 89.000 100 11 0 2111 2210 766523741 766523840 1.240000e-24 124.0
30 TraesCS4D01G186600 chr2B 75.177 141 33 2 2508 2647 189749845 189749706 7.620000e-07 65.8
31 TraesCS4D01G186600 chr7D 95.455 88 4 0 2128 2215 311884558 311884471 1.230000e-29 141.0
32 TraesCS4D01G186600 chr7D 90.291 103 8 2 2123 2223 376379266 376379164 2.060000e-27 134.0
33 TraesCS4D01G186600 chr7D 90.099 101 8 2 2123 2222 227621041 227620942 2.660000e-26 130.0
34 TraesCS4D01G186600 chr7D 90.411 73 7 0 2043 2115 576648476 576648404 2.700000e-16 97.1
35 TraesCS4D01G186600 chr6B 95.349 86 4 0 2128 2213 475446767 475446852 1.590000e-28 137.0
36 TraesCS4D01G186600 chr6B 89.744 78 8 0 2038 2115 642993744 642993667 2.090000e-17 100.0
37 TraesCS4D01G186600 chr6B 81.395 86 15 1 2568 2652 499594530 499594615 5.890000e-08 69.4
38 TraesCS4D01G186600 chr5B 94.318 88 5 0 2123 2210 556139982 556139895 5.720000e-28 135.0
39 TraesCS4D01G186600 chr5B 77.320 194 35 7 2508 2695 658364599 658364409 4.490000e-19 106.0
40 TraesCS4D01G186600 chr5D 83.088 136 18 3 2564 2695 521984262 521984128 5.760000e-23 119.0
41 TraesCS4D01G186600 chr5D 88.608 79 7 2 2038 2115 67588993 67589070 9.710000e-16 95.3
42 TraesCS4D01G186600 chr1B 92.405 79 6 0 2037 2115 58566978 58566900 2.680000e-21 113.0
43 TraesCS4D01G186600 chr5A 90.123 81 7 1 2036 2115 46719822 46719902 1.610000e-18 104.0
44 TraesCS4D01G186600 chr3B 90.278 72 5 2 2038 2108 654645089 654645019 3.490000e-15 93.5
45 TraesCS4D01G186600 chr3B 88.462 78 8 1 2038 2115 788379576 788379652 3.490000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G186600 chr4D 324213125 324216412 3287 False 6072.0 6072 100.00000 1 3288 1 chr4D.!!$F1 3287
1 TraesCS4D01G186600 chr4A 147363100 147366138 3038 True 844.5 2294 92.61775 1 3284 4 chr4A.!!$R2 3283
2 TraesCS4D01G186600 chr4B 404566780 404569778 2998 False 726.8 1170 89.55900 34 3273 5 chr4B.!!$F2 3239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 537 0.179121 TCGATCATACCACGCACCAC 60.179 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2391 2678 0.170116 AATGCCCGTGCGTTGTAATG 59.83 50.0 0.0 0.0 44.9 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.820467 TGAAAATCTTCAACGTGCAGGAT 59.180 39.130 14.38 0.00 38.65 3.24
54 55 5.500645 TCATGATCTCGTCAACTTCGTAT 57.499 39.130 0.00 0.00 40.97 3.06
143 149 3.366724 CGTATTAGTTTGCTGCTCGTTCA 59.633 43.478 0.00 0.00 0.00 3.18
147 153 5.933187 TTAGTTTGCTGCTCGTTCATTTA 57.067 34.783 0.00 0.00 0.00 1.40
151 157 6.215845 AGTTTGCTGCTCGTTCATTTAAATT 58.784 32.000 0.00 0.00 0.00 1.82
172 188 2.408271 TGCAATGCAAAACCCAAACA 57.592 40.000 5.01 0.00 34.76 2.83
213 254 3.665675 ATCAGACGCGGGCAGGAAC 62.666 63.158 12.47 0.00 0.00 3.62
256 301 1.805495 GCTACTAGCCGGCCAACTAAC 60.805 57.143 26.15 3.63 34.48 2.34
262 307 1.079681 CCGGCCAACTAACGCTGTA 60.080 57.895 2.24 0.00 0.00 2.74
263 308 1.082117 CCGGCCAACTAACGCTGTAG 61.082 60.000 2.24 0.00 0.00 2.74
264 309 0.389426 CGGCCAACTAACGCTGTAGT 60.389 55.000 2.24 0.00 35.80 2.73
265 310 1.135315 CGGCCAACTAACGCTGTAGTA 60.135 52.381 2.24 0.00 33.05 1.82
467 537 0.179121 TCGATCATACCACGCACCAC 60.179 55.000 0.00 0.00 0.00 4.16
468 538 0.459411 CGATCATACCACGCACCACA 60.459 55.000 0.00 0.00 0.00 4.17
469 539 1.006832 GATCATACCACGCACCACAC 58.993 55.000 0.00 0.00 0.00 3.82
507 577 1.672441 CGCCAACCAAATCACCCATTG 60.672 52.381 0.00 0.00 0.00 2.82
515 585 2.403252 AATCACCCATTGTCGACTCC 57.597 50.000 17.92 0.00 0.00 3.85
517 587 1.052617 TCACCCATTGTCGACTCCAA 58.947 50.000 17.92 2.98 0.00 3.53
518 588 1.156736 CACCCATTGTCGACTCCAAC 58.843 55.000 17.92 0.00 0.00 3.77
520 590 1.420138 ACCCATTGTCGACTCCAACTT 59.580 47.619 17.92 0.00 0.00 2.66
521 591 1.806542 CCCATTGTCGACTCCAACTTG 59.193 52.381 17.92 3.92 0.00 3.16
522 592 1.806542 CCATTGTCGACTCCAACTTGG 59.193 52.381 17.92 0.74 39.43 3.61
523 593 1.806542 CATTGTCGACTCCAACTTGGG 59.193 52.381 17.92 1.80 38.32 4.12
524 594 1.124780 TTGTCGACTCCAACTTGGGA 58.875 50.000 17.92 0.00 38.32 4.37
536 606 6.877668 TCCAACTTGGGAGTAATGTATGTA 57.122 37.500 8.01 0.00 38.32 2.29
537 607 7.260387 TCCAACTTGGGAGTAATGTATGTAA 57.740 36.000 8.01 0.00 38.32 2.41
538 608 7.867921 TCCAACTTGGGAGTAATGTATGTAAT 58.132 34.615 8.01 0.00 38.32 1.89
541 611 9.173021 CAACTTGGGAGTAATGTATGTAATTCA 57.827 33.333 0.00 0.00 34.21 2.57
542 612 9.920946 AACTTGGGAGTAATGTATGTAATTCAT 57.079 29.630 0.00 0.00 33.45 2.57
550 620 9.944376 AGTAATGTATGTAATTCATAATCCGCT 57.056 29.630 0.00 0.00 40.21 5.52
553 623 9.944376 AATGTATGTAATTCATAATCCGCTAGT 57.056 29.630 0.00 0.00 40.21 2.57
554 624 8.981724 TGTATGTAATTCATAATCCGCTAGTC 57.018 34.615 0.00 0.00 40.21 2.59
555 625 8.581578 TGTATGTAATTCATAATCCGCTAGTCA 58.418 33.333 0.00 0.00 40.21 3.41
556 626 9.419297 GTATGTAATTCATAATCCGCTAGTCAA 57.581 33.333 0.00 0.00 40.21 3.18
558 628 8.902540 TGTAATTCATAATCCGCTAGTCAATT 57.097 30.769 0.00 0.00 0.00 2.32
560 630 9.813080 GTAATTCATAATCCGCTAGTCAATTTC 57.187 33.333 0.00 0.00 0.00 2.17
573 694 6.314152 GCTAGTCAATTTCTTTCTCCTACCAC 59.686 42.308 0.00 0.00 0.00 4.16
815 941 1.395670 GAAAAACAAGTCGAAGCGGC 58.604 50.000 0.00 0.00 0.00 6.53
817 943 1.792118 AAAACAAGTCGAAGCGGCCC 61.792 55.000 0.00 0.00 28.67 5.80
875 1001 1.003718 GACCTCACTTTCACGGGGG 60.004 63.158 0.00 0.00 0.00 5.40
876 1002 1.460689 ACCTCACTTTCACGGGGGA 60.461 57.895 0.00 0.00 0.00 4.81
877 1003 1.296715 CCTCACTTTCACGGGGGAG 59.703 63.158 0.00 0.00 0.00 4.30
878 1004 1.192146 CCTCACTTTCACGGGGGAGA 61.192 60.000 0.00 0.00 0.00 3.71
879 1005 0.247736 CTCACTTTCACGGGGGAGAG 59.752 60.000 0.00 0.00 0.00 3.20
880 1006 1.192146 TCACTTTCACGGGGGAGAGG 61.192 60.000 0.00 0.00 0.00 3.69
1035 1238 1.995626 CCTCCGTCCCAACCATCCT 60.996 63.158 0.00 0.00 0.00 3.24
1036 1239 1.522569 CTCCGTCCCAACCATCCTC 59.477 63.158 0.00 0.00 0.00 3.71
1039 1242 3.007542 GTCCCAACCATCCTCCCC 58.992 66.667 0.00 0.00 0.00 4.81
1041 1244 2.287194 CCCAACCATCCTCCCCCT 60.287 66.667 0.00 0.00 0.00 4.79
1043 1246 2.746375 CCAACCATCCTCCCCCTCG 61.746 68.421 0.00 0.00 0.00 4.63
1083 1289 2.109799 ATTGCCGATCGAGCAGGG 59.890 61.111 23.72 6.86 42.17 4.45
1106 1312 2.793278 TATCGTGTGTGCATAGCGAT 57.207 45.000 20.49 20.49 43.40 4.58
1720 1980 4.307432 TCTTAGGCTTCTTTGACTTGTCG 58.693 43.478 0.00 0.00 0.00 4.35
1723 1983 1.192534 GGCTTCTTTGACTTGTCGTCG 59.807 52.381 0.00 0.00 45.87 5.12
1737 1997 2.137523 GTCGTCGGGATCTAGTCTCTC 58.862 57.143 0.00 0.00 0.00 3.20
1805 2067 5.212194 GTCAACTGCATGTGTAACGAAAAT 58.788 37.500 0.00 0.00 42.39 1.82
1808 2070 3.253188 ACTGCATGTGTAACGAAAATGCT 59.747 39.130 7.38 0.00 43.17 3.79
1809 2071 3.820689 TGCATGTGTAACGAAAATGCTC 58.179 40.909 7.38 0.00 43.17 4.26
1810 2072 3.251972 TGCATGTGTAACGAAAATGCTCA 59.748 39.130 7.38 0.00 43.17 4.26
1812 2074 4.858692 GCATGTGTAACGAAAATGCTCATT 59.141 37.500 0.00 0.00 42.39 2.57
1813 2075 5.345741 GCATGTGTAACGAAAATGCTCATTT 59.654 36.000 2.24 2.24 42.39 2.32
1814 2076 6.668090 GCATGTGTAACGAAAATGCTCATTTG 60.668 38.462 8.43 0.94 42.39 2.32
1815 2077 4.679197 TGTGTAACGAAAATGCTCATTTGC 59.321 37.500 8.43 6.00 42.39 3.68
1818 2080 6.747280 GTGTAACGAAAATGCTCATTTGCTAT 59.253 34.615 8.43 2.00 40.57 2.97
1819 2081 7.908082 GTGTAACGAAAATGCTCATTTGCTATA 59.092 33.333 8.43 1.20 40.57 1.31
1820 2082 7.908082 TGTAACGAAAATGCTCATTTGCTATAC 59.092 33.333 8.43 11.35 40.57 1.47
1821 2083 6.683974 ACGAAAATGCTCATTTGCTATACT 57.316 33.333 8.43 0.00 40.57 2.12
1822 2084 7.088589 ACGAAAATGCTCATTTGCTATACTT 57.911 32.000 8.43 0.00 40.57 2.24
1823 2085 7.189512 ACGAAAATGCTCATTTGCTATACTTC 58.810 34.615 8.43 0.48 40.57 3.01
1824 2086 7.148255 ACGAAAATGCTCATTTGCTATACTTCA 60.148 33.333 8.43 0.00 40.57 3.02
1825 2087 7.859377 CGAAAATGCTCATTTGCTATACTTCAT 59.141 33.333 8.43 0.00 40.57 2.57
1826 2088 9.525409 GAAAATGCTCATTTGCTATACTTCATT 57.475 29.630 8.43 0.00 40.57 2.57
1827 2089 9.525409 AAAATGCTCATTTGCTATACTTCATTC 57.475 29.630 8.43 0.00 40.57 2.67
1915 2178 2.456119 GGTTGAGCGCTGTGGATCG 61.456 63.158 18.48 0.00 0.00 3.69
1977 2260 3.882888 TGATGCTCCGGGCTTATTTTTAG 59.117 43.478 14.76 0.00 42.39 1.85
2003 2286 4.548916 CGCTGATGACAACAAATAGCTACG 60.549 45.833 0.00 0.00 32.35 3.51
2040 2327 7.611213 AAAAAGCTACGCATACACTAAATCT 57.389 32.000 0.00 0.00 0.00 2.40
2041 2328 6.830114 AAAGCTACGCATACACTAAATCTC 57.170 37.500 0.00 0.00 0.00 2.75
2042 2329 5.776173 AGCTACGCATACACTAAATCTCT 57.224 39.130 0.00 0.00 0.00 3.10
2043 2330 6.879276 AGCTACGCATACACTAAATCTCTA 57.121 37.500 0.00 0.00 0.00 2.43
2044 2331 6.670233 AGCTACGCATACACTAAATCTCTAC 58.330 40.000 0.00 0.00 0.00 2.59
2045 2332 6.487331 AGCTACGCATACACTAAATCTCTACT 59.513 38.462 0.00 0.00 0.00 2.57
2046 2333 7.660617 AGCTACGCATACACTAAATCTCTACTA 59.339 37.037 0.00 0.00 0.00 1.82
2047 2334 7.745594 GCTACGCATACACTAAATCTCTACTAC 59.254 40.741 0.00 0.00 0.00 2.73
2048 2335 7.804843 ACGCATACACTAAATCTCTACTACT 57.195 36.000 0.00 0.00 0.00 2.57
2049 2336 8.223177 ACGCATACACTAAATCTCTACTACTT 57.777 34.615 0.00 0.00 0.00 2.24
2050 2337 9.334947 ACGCATACACTAAATCTCTACTACTTA 57.665 33.333 0.00 0.00 0.00 2.24
2080 2367 7.839680 AATGTAAGGTTCTCATTTCACCTTT 57.160 32.000 8.08 0.00 46.85 3.11
2081 2368 6.877611 TGTAAGGTTCTCATTTCACCTTTC 57.122 37.500 8.08 4.36 46.85 2.62
2082 2369 6.601332 TGTAAGGTTCTCATTTCACCTTTCT 58.399 36.000 8.08 0.00 46.85 2.52
2083 2370 7.060421 TGTAAGGTTCTCATTTCACCTTTCTT 58.940 34.615 8.08 0.00 46.85 2.52
2084 2371 6.641169 AAGGTTCTCATTTCACCTTTCTTC 57.359 37.500 0.00 0.00 46.85 2.87
2085 2372 5.946486 AGGTTCTCATTTCACCTTTCTTCT 58.054 37.500 0.00 0.00 37.70 2.85
2086 2373 6.000840 AGGTTCTCATTTCACCTTTCTTCTC 58.999 40.000 0.00 0.00 37.70 2.87
2087 2374 5.765182 GGTTCTCATTTCACCTTTCTTCTCA 59.235 40.000 0.00 0.00 0.00 3.27
2088 2375 6.293680 GGTTCTCATTTCACCTTTCTTCTCAC 60.294 42.308 0.00 0.00 0.00 3.51
2089 2376 5.308825 TCTCATTTCACCTTTCTTCTCACC 58.691 41.667 0.00 0.00 0.00 4.02
2090 2377 5.047566 TCATTTCACCTTTCTTCTCACCA 57.952 39.130 0.00 0.00 0.00 4.17
2091 2378 5.634118 TCATTTCACCTTTCTTCTCACCAT 58.366 37.500 0.00 0.00 0.00 3.55
2092 2379 6.070656 TCATTTCACCTTTCTTCTCACCATT 58.929 36.000 0.00 0.00 0.00 3.16
2093 2380 6.207417 TCATTTCACCTTTCTTCTCACCATTC 59.793 38.462 0.00 0.00 0.00 2.67
2094 2381 4.021102 TCACCTTTCTTCTCACCATTCC 57.979 45.455 0.00 0.00 0.00 3.01
2095 2382 3.652869 TCACCTTTCTTCTCACCATTCCT 59.347 43.478 0.00 0.00 0.00 3.36
2096 2383 4.104738 TCACCTTTCTTCTCACCATTCCTT 59.895 41.667 0.00 0.00 0.00 3.36
2097 2384 4.457257 CACCTTTCTTCTCACCATTCCTTC 59.543 45.833 0.00 0.00 0.00 3.46
2098 2385 3.686726 CCTTTCTTCTCACCATTCCTTCG 59.313 47.826 0.00 0.00 0.00 3.79
2099 2386 4.319177 CTTTCTTCTCACCATTCCTTCGT 58.681 43.478 0.00 0.00 0.00 3.85
2100 2387 3.594603 TCTTCTCACCATTCCTTCGTC 57.405 47.619 0.00 0.00 0.00 4.20
2101 2388 2.233922 TCTTCTCACCATTCCTTCGTCC 59.766 50.000 0.00 0.00 0.00 4.79
2102 2389 1.639722 TCTCACCATTCCTTCGTCCA 58.360 50.000 0.00 0.00 0.00 4.02
2103 2390 1.974957 TCTCACCATTCCTTCGTCCAA 59.025 47.619 0.00 0.00 0.00 3.53
2104 2391 2.076863 CTCACCATTCCTTCGTCCAAC 58.923 52.381 0.00 0.00 0.00 3.77
2105 2392 1.165270 CACCATTCCTTCGTCCAACC 58.835 55.000 0.00 0.00 0.00 3.77
2106 2393 1.064825 ACCATTCCTTCGTCCAACCT 58.935 50.000 0.00 0.00 0.00 3.50
2107 2394 1.423921 ACCATTCCTTCGTCCAACCTT 59.576 47.619 0.00 0.00 0.00 3.50
2108 2395 2.158519 ACCATTCCTTCGTCCAACCTTT 60.159 45.455 0.00 0.00 0.00 3.11
2109 2396 2.488153 CCATTCCTTCGTCCAACCTTTC 59.512 50.000 0.00 0.00 0.00 2.62
2110 2397 3.146066 CATTCCTTCGTCCAACCTTTCA 58.854 45.455 0.00 0.00 0.00 2.69
2111 2398 3.502123 TTCCTTCGTCCAACCTTTCAT 57.498 42.857 0.00 0.00 0.00 2.57
2112 2399 2.778299 TCCTTCGTCCAACCTTTCATG 58.222 47.619 0.00 0.00 0.00 3.07
2113 2400 2.105821 TCCTTCGTCCAACCTTTCATGT 59.894 45.455 0.00 0.00 0.00 3.21
2114 2401 3.325425 TCCTTCGTCCAACCTTTCATGTA 59.675 43.478 0.00 0.00 0.00 2.29
2115 2402 3.435671 CCTTCGTCCAACCTTTCATGTAC 59.564 47.826 0.00 0.00 0.00 2.90
2116 2403 3.048337 TCGTCCAACCTTTCATGTACC 57.952 47.619 0.00 0.00 0.00 3.34
2117 2404 2.081462 CGTCCAACCTTTCATGTACCC 58.919 52.381 0.00 0.00 0.00 3.69
2118 2405 2.290071 CGTCCAACCTTTCATGTACCCT 60.290 50.000 0.00 0.00 0.00 4.34
2119 2406 3.763057 GTCCAACCTTTCATGTACCCTT 58.237 45.455 0.00 0.00 0.00 3.95
2120 2407 4.149598 GTCCAACCTTTCATGTACCCTTT 58.850 43.478 0.00 0.00 0.00 3.11
2121 2408 4.587262 GTCCAACCTTTCATGTACCCTTTT 59.413 41.667 0.00 0.00 0.00 2.27
2122 2409 4.830600 TCCAACCTTTCATGTACCCTTTTC 59.169 41.667 0.00 0.00 0.00 2.29
2123 2410 4.320935 CCAACCTTTCATGTACCCTTTTCG 60.321 45.833 0.00 0.00 0.00 3.46
2124 2411 4.094830 ACCTTTCATGTACCCTTTTCGT 57.905 40.909 0.00 0.00 0.00 3.85
2125 2412 4.466827 ACCTTTCATGTACCCTTTTCGTT 58.533 39.130 0.00 0.00 0.00 3.85
2126 2413 4.891168 ACCTTTCATGTACCCTTTTCGTTT 59.109 37.500 0.00 0.00 0.00 3.60
2127 2414 5.009310 ACCTTTCATGTACCCTTTTCGTTTC 59.991 40.000 0.00 0.00 0.00 2.78
2128 2415 5.009210 CCTTTCATGTACCCTTTTCGTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
2129 2416 6.452494 TTTCATGTACCCTTTTCGTTTCAA 57.548 33.333 0.00 0.00 0.00 2.69
2130 2417 6.452494 TTCATGTACCCTTTTCGTTTCAAA 57.548 33.333 0.00 0.00 0.00 2.69
2131 2418 6.452494 TCATGTACCCTTTTCGTTTCAAAA 57.548 33.333 0.00 0.00 0.00 2.44
2132 2419 7.045126 TCATGTACCCTTTTCGTTTCAAAAT 57.955 32.000 0.00 0.00 0.00 1.82
2133 2420 8.167605 TCATGTACCCTTTTCGTTTCAAAATA 57.832 30.769 0.00 0.00 0.00 1.40
2134 2421 8.630917 TCATGTACCCTTTTCGTTTCAAAATAA 58.369 29.630 0.00 0.00 0.00 1.40
2135 2422 8.911662 CATGTACCCTTTTCGTTTCAAAATAAG 58.088 33.333 0.00 0.00 0.00 1.73
2136 2423 7.998580 TGTACCCTTTTCGTTTCAAAATAAGT 58.001 30.769 0.00 0.00 0.00 2.24
2137 2424 7.916450 TGTACCCTTTTCGTTTCAAAATAAGTG 59.084 33.333 0.00 0.00 0.00 3.16
2138 2425 7.102847 ACCCTTTTCGTTTCAAAATAAGTGA 57.897 32.000 0.00 0.00 0.00 3.41
2139 2426 6.976349 ACCCTTTTCGTTTCAAAATAAGTGAC 59.024 34.615 0.00 0.00 0.00 3.67
2140 2427 7.147966 ACCCTTTTCGTTTCAAAATAAGTGACT 60.148 33.333 0.00 0.00 0.00 3.41
2141 2428 7.378728 CCCTTTTCGTTTCAAAATAAGTGACTC 59.621 37.037 0.00 0.00 0.00 3.36
2142 2429 7.913297 CCTTTTCGTTTCAAAATAAGTGACTCA 59.087 33.333 0.00 0.00 0.00 3.41
2143 2430 9.284594 CTTTTCGTTTCAAAATAAGTGACTCAA 57.715 29.630 0.00 0.00 0.00 3.02
2144 2431 8.835467 TTTCGTTTCAAAATAAGTGACTCAAG 57.165 30.769 0.00 0.00 0.00 3.02
2145 2432 7.548196 TCGTTTCAAAATAAGTGACTCAAGT 57.452 32.000 0.00 0.00 0.00 3.16
2146 2433 7.981142 TCGTTTCAAAATAAGTGACTCAAGTT 58.019 30.769 0.00 0.00 0.00 2.66
2147 2434 8.455682 TCGTTTCAAAATAAGTGACTCAAGTTT 58.544 29.630 0.00 0.00 0.00 2.66
2148 2435 8.523464 CGTTTCAAAATAAGTGACTCAAGTTTG 58.477 33.333 11.98 11.98 0.00 2.93
2149 2436 9.353999 GTTTCAAAATAAGTGACTCAAGTTTGT 57.646 29.630 15.56 0.00 0.00 2.83
2151 2438 9.997482 TTCAAAATAAGTGACTCAAGTTTGTAC 57.003 29.630 15.56 0.00 0.00 2.90
2152 2439 9.391006 TCAAAATAAGTGACTCAAGTTTGTACT 57.609 29.630 15.56 0.00 35.68 2.73
2157 2444 7.772332 AAGTGACTCAAGTTTGTACTAACTG 57.228 36.000 20.88 15.11 38.33 3.16
2158 2445 6.875076 AGTGACTCAAGTTTGTACTAACTGT 58.125 36.000 20.88 15.07 38.33 3.55
2159 2446 6.757010 AGTGACTCAAGTTTGTACTAACTGTG 59.243 38.462 20.88 18.85 38.33 3.66
2160 2447 6.534079 GTGACTCAAGTTTGTACTAACTGTGT 59.466 38.462 20.88 18.22 38.33 3.72
2161 2448 7.703621 GTGACTCAAGTTTGTACTAACTGTGTA 59.296 37.037 20.88 8.15 38.33 2.90
2162 2449 8.418662 TGACTCAAGTTTGTACTAACTGTGTAT 58.581 33.333 20.88 13.32 38.33 2.29
2163 2450 9.257651 GACTCAAGTTTGTACTAACTGTGTATT 57.742 33.333 20.88 4.11 38.33 1.89
2169 2456 9.774413 AGTTTGTACTAACTGTGTATTAAAGCT 57.226 29.630 19.76 0.00 37.00 3.74
2179 2466 9.774413 AACTGTGTATTAAAGCTAGTACAAAGT 57.226 29.630 8.48 8.48 44.60 2.66
2180 2467 9.774413 ACTGTGTATTAAAGCTAGTACAAAGTT 57.226 29.630 8.48 0.00 42.13 2.66
2182 2469 9.767228 TGTGTATTAAAGCTAGTACAAAGTTGA 57.233 29.630 0.00 0.00 33.48 3.18
2184 2471 9.991906 TGTATTAAAGCTAGTACAAAGTTGAGT 57.008 29.630 0.00 0.00 29.89 3.41
2187 2474 6.846325 AAAGCTAGTACAAAGTTGAGTCAC 57.154 37.500 0.00 0.00 0.00 3.67
2188 2475 5.793030 AGCTAGTACAAAGTTGAGTCACT 57.207 39.130 0.00 0.00 0.00 3.41
2189 2476 6.163135 AGCTAGTACAAAGTTGAGTCACTT 57.837 37.500 0.00 0.00 38.74 3.16
2190 2477 7.286215 AGCTAGTACAAAGTTGAGTCACTTA 57.714 36.000 0.00 0.00 35.87 2.24
2191 2478 7.723324 AGCTAGTACAAAGTTGAGTCACTTAA 58.277 34.615 0.00 0.00 35.87 1.85
2192 2479 8.368668 AGCTAGTACAAAGTTGAGTCACTTAAT 58.631 33.333 0.00 0.00 35.87 1.40
2193 2480 8.989980 GCTAGTACAAAGTTGAGTCACTTAATT 58.010 33.333 0.00 0.00 35.87 1.40
2196 2483 8.621286 AGTACAAAGTTGAGTCACTTAATTTGG 58.379 33.333 16.35 5.04 35.87 3.28
2197 2484 6.805713 ACAAAGTTGAGTCACTTAATTTGGG 58.194 36.000 16.35 4.33 35.87 4.12
2198 2485 6.605594 ACAAAGTTGAGTCACTTAATTTGGGA 59.394 34.615 16.35 0.00 35.87 4.37
2199 2486 6.635030 AAGTTGAGTCACTTAATTTGGGAC 57.365 37.500 0.00 5.66 35.10 4.46
2200 2487 4.755123 AGTTGAGTCACTTAATTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2201 2488 3.670625 TGAGTCACTTAATTTGGGACGG 58.329 45.455 7.56 0.00 33.84 4.79
2202 2489 3.325425 TGAGTCACTTAATTTGGGACGGA 59.675 43.478 7.56 0.00 33.84 4.69
2203 2490 3.933332 GAGTCACTTAATTTGGGACGGAG 59.067 47.826 7.56 0.00 33.84 4.63
2204 2491 3.007635 GTCACTTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2205 2492 2.026636 TCACTTAATTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2206 2493 2.026636 CACTTAATTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2207 2494 2.238898 ACTTAATTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2208 2495 1.961133 TAATTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2209 2496 1.961133 AATTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2210 2497 2.191981 ATTTGGGACGGAGGGAGTAT 57.808 50.000 0.00 0.00 0.00 2.12
2211 2498 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
2212 2499 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
2213 2500 2.304221 TGGGACGGAGGGAGTATATG 57.696 55.000 0.00 0.00 0.00 1.78
2214 2501 1.784593 TGGGACGGAGGGAGTATATGA 59.215 52.381 0.00 0.00 0.00 2.15
2215 2502 2.382305 TGGGACGGAGGGAGTATATGAT 59.618 50.000 0.00 0.00 0.00 2.45
2216 2503 3.594685 TGGGACGGAGGGAGTATATGATA 59.405 47.826 0.00 0.00 0.00 2.15
2217 2504 4.044952 TGGGACGGAGGGAGTATATGATAA 59.955 45.833 0.00 0.00 0.00 1.75
2218 2505 5.209659 GGGACGGAGGGAGTATATGATAAT 58.790 45.833 0.00 0.00 0.00 1.28
2219 2506 5.302313 GGGACGGAGGGAGTATATGATAATC 59.698 48.000 0.00 0.00 0.00 1.75
2220 2507 5.892119 GGACGGAGGGAGTATATGATAATCA 59.108 44.000 0.00 0.00 0.00 2.57
2221 2508 6.380274 GGACGGAGGGAGTATATGATAATCAA 59.620 42.308 0.00 0.00 0.00 2.57
2222 2509 7.070074 GGACGGAGGGAGTATATGATAATCAAT 59.930 40.741 0.00 0.00 0.00 2.57
2223 2510 8.012957 ACGGAGGGAGTATATGATAATCAATC 57.987 38.462 0.00 0.00 34.93 2.67
2260 2547 9.588096 ACTTACCTTCTAAATCAATTCCACTTT 57.412 29.630 0.00 0.00 0.00 2.66
2315 2602 8.687824 ATAAGGTAATTCACGAGCAAAATTTG 57.312 30.769 0.57 0.57 0.00 2.32
2316 2603 6.325919 AGGTAATTCACGAGCAAAATTTGA 57.674 33.333 10.26 0.00 0.00 2.69
2317 2604 6.924111 AGGTAATTCACGAGCAAAATTTGAT 58.076 32.000 10.26 2.27 0.00 2.57
2318 2605 8.050778 AGGTAATTCACGAGCAAAATTTGATA 57.949 30.769 10.26 0.00 0.00 2.15
2319 2606 8.519526 AGGTAATTCACGAGCAAAATTTGATAA 58.480 29.630 10.26 0.00 0.00 1.75
2320 2607 9.134734 GGTAATTCACGAGCAAAATTTGATAAA 57.865 29.630 10.26 0.00 0.00 1.40
2321 2608 9.937577 GTAATTCACGAGCAAAATTTGATAAAC 57.062 29.630 10.26 0.00 0.00 2.01
2322 2609 8.586570 AATTCACGAGCAAAATTTGATAAACA 57.413 26.923 10.26 0.00 0.00 2.83
2323 2610 8.761575 ATTCACGAGCAAAATTTGATAAACAT 57.238 26.923 10.26 0.00 0.00 2.71
2324 2611 8.586570 TTCACGAGCAAAATTTGATAAACATT 57.413 26.923 10.26 0.00 0.00 2.71
2325 2612 8.586570 TCACGAGCAAAATTTGATAAACATTT 57.413 26.923 10.26 0.00 0.00 2.32
2326 2613 9.684448 TCACGAGCAAAATTTGATAAACATTTA 57.316 25.926 10.26 0.00 0.00 1.40
2353 2640 9.715123 TTTACACAATCGCATTATTATTGACAG 57.285 29.630 0.00 0.00 35.18 3.51
2354 2641 6.728200 ACACAATCGCATTATTATTGACAGG 58.272 36.000 0.00 0.00 35.18 4.00
2355 2642 6.318648 ACACAATCGCATTATTATTGACAGGT 59.681 34.615 0.00 0.00 35.18 4.00
2356 2643 7.497579 ACACAATCGCATTATTATTGACAGGTA 59.502 33.333 0.00 0.00 35.18 3.08
2357 2644 8.341903 CACAATCGCATTATTATTGACAGGTAA 58.658 33.333 0.00 0.00 35.18 2.85
2358 2645 8.898761 ACAATCGCATTATTATTGACAGGTAAA 58.101 29.630 0.00 0.00 35.18 2.01
2359 2646 9.897744 CAATCGCATTATTATTGACAGGTAAAT 57.102 29.630 0.00 0.00 33.38 1.40
2361 2648 8.669946 TCGCATTATTATTGACAGGTAAATCA 57.330 30.769 0.00 0.00 0.00 2.57
2362 2649 8.556194 TCGCATTATTATTGACAGGTAAATCAC 58.444 33.333 0.00 0.00 0.00 3.06
2363 2650 8.341903 CGCATTATTATTGACAGGTAAATCACA 58.658 33.333 0.00 0.00 0.00 3.58
2367 2654 7.944729 ATTATTGACAGGTAAATCACAAGCT 57.055 32.000 0.00 0.00 0.00 3.74
2369 2656 8.856153 TTATTGACAGGTAAATCACAAGCTAA 57.144 30.769 0.00 0.00 0.00 3.09
2370 2657 6.554334 TTGACAGGTAAATCACAAGCTAAC 57.446 37.500 0.00 0.00 0.00 2.34
2371 2658 4.688879 TGACAGGTAAATCACAAGCTAACG 59.311 41.667 0.00 0.00 0.00 3.18
2372 2659 4.638304 ACAGGTAAATCACAAGCTAACGT 58.362 39.130 0.00 0.00 0.00 3.99
2373 2660 5.786311 ACAGGTAAATCACAAGCTAACGTA 58.214 37.500 0.00 0.00 0.00 3.57
2374 2661 5.636543 ACAGGTAAATCACAAGCTAACGTAC 59.363 40.000 0.00 0.00 0.00 3.67
2375 2662 5.867716 CAGGTAAATCACAAGCTAACGTACT 59.132 40.000 0.00 0.00 0.00 2.73
2376 2663 7.031372 CAGGTAAATCACAAGCTAACGTACTA 58.969 38.462 0.00 0.00 0.00 1.82
2377 2664 7.220300 CAGGTAAATCACAAGCTAACGTACTAG 59.780 40.741 0.00 0.00 0.00 2.57
2378 2665 7.121759 AGGTAAATCACAAGCTAACGTACTAGA 59.878 37.037 0.00 0.00 0.00 2.43
2379 2666 7.756722 GGTAAATCACAAGCTAACGTACTAGAA 59.243 37.037 0.00 0.00 0.00 2.10
2380 2667 9.298774 GTAAATCACAAGCTAACGTACTAGAAT 57.701 33.333 0.00 0.00 0.00 2.40
2402 2689 9.733556 AGAATATTTATATCCCATTACAACGCA 57.266 29.630 0.00 0.00 0.00 5.24
2403 2690 9.769093 GAATATTTATATCCCATTACAACGCAC 57.231 33.333 0.00 0.00 0.00 5.34
2404 2691 5.660629 TTTATATCCCATTACAACGCACG 57.339 39.130 0.00 0.00 0.00 5.34
2405 2692 1.942677 TATCCCATTACAACGCACGG 58.057 50.000 0.00 0.00 0.00 4.94
2406 2693 0.746563 ATCCCATTACAACGCACGGG 60.747 55.000 0.00 0.00 34.81 5.28
2407 2694 2.483288 CCATTACAACGCACGGGC 59.517 61.111 0.00 0.00 0.00 6.13
2408 2695 2.328856 CCATTACAACGCACGGGCA 61.329 57.895 11.77 0.00 41.24 5.36
2409 2696 1.653094 CCATTACAACGCACGGGCAT 61.653 55.000 11.77 0.00 41.24 4.40
2410 2697 0.170116 CATTACAACGCACGGGCATT 59.830 50.000 11.77 0.00 41.24 3.56
2413 2700 2.334653 CAACGCACGGGCATTGTT 59.665 55.556 10.90 2.50 38.34 2.83
2414 2701 1.729131 CAACGCACGGGCATTGTTC 60.729 57.895 10.90 0.00 38.34 3.18
2415 2702 1.896660 AACGCACGGGCATTGTTCT 60.897 52.632 11.77 0.00 41.24 3.01
2416 2703 0.604243 AACGCACGGGCATTGTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
2417 2704 1.019278 ACGCACGGGCATTGTTCTAG 61.019 55.000 11.77 0.00 41.24 2.43
2418 2705 1.019278 CGCACGGGCATTGTTCTAGT 61.019 55.000 11.77 0.00 41.24 2.57
2450 2737 6.605471 ATGACACTAATAGGTGAGTCAACA 57.395 37.500 11.57 0.00 40.13 3.33
2453 2740 6.210584 TGACACTAATAGGTGAGTCAACATGA 59.789 38.462 11.57 0.00 40.13 3.07
2481 2768 3.195698 GCCCTGCGAACGATCCAC 61.196 66.667 0.00 0.00 0.00 4.02
2482 2769 2.511600 CCCTGCGAACGATCCACC 60.512 66.667 0.00 0.00 0.00 4.61
2497 2784 4.925054 CGATCCACCGAGTAACAAAAGTAA 59.075 41.667 0.00 0.00 0.00 2.24
2516 2803 2.795231 ATTCTCCTGACCCACATGTG 57.205 50.000 19.31 19.31 0.00 3.21
2530 2817 3.337358 CACATGTGAGTGACATAGGCAA 58.663 45.455 21.64 0.00 43.96 4.52
2531 2818 3.943381 CACATGTGAGTGACATAGGCAAT 59.057 43.478 21.64 0.00 43.96 3.56
2550 2837 4.620567 GCAATGAGGGGTAAAAATGTCCAC 60.621 45.833 0.00 0.00 0.00 4.02
2582 2923 2.158519 GGAGAAGGTCAAACCCCTTTGA 60.159 50.000 0.00 0.00 42.37 2.69
2589 2930 1.566703 TCAAACCCCTTTGACTGGACA 59.433 47.619 0.00 0.00 40.76 4.02
2610 2954 6.183360 GGACAGAAACATCATGAAGGGTATTG 60.183 42.308 0.00 0.00 0.00 1.90
2642 2986 0.598065 CAAACGGAAGAGGGGCAAAG 59.402 55.000 0.00 0.00 0.00 2.77
2814 3158 4.893709 TGCTGAAATTGCATGCGG 57.106 50.000 14.09 0.00 35.31 5.69
2852 3196 2.826674 TGATAAAGGGAAAGGGGCAG 57.173 50.000 0.00 0.00 0.00 4.85
2881 3249 4.818546 CACACAAGATGGAGTTCTCACTTT 59.181 41.667 2.24 0.00 31.22 2.66
2886 3254 7.227512 CACAAGATGGAGTTCTCACTTTAAGTT 59.772 37.037 0.00 0.00 31.22 2.66
2919 3287 2.375174 TGAGGAAGGTGTTTGGTGCTAT 59.625 45.455 0.00 0.00 0.00 2.97
2974 3342 5.351458 CATTCAGTCACACCGATATTCTCA 58.649 41.667 0.00 0.00 0.00 3.27
2985 3353 5.636965 CACCGATATTCTCATGGAGATGAAC 59.363 44.000 0.00 0.00 38.56 3.18
2996 3364 1.372087 GAGATGAACTGGGCGCCTTG 61.372 60.000 28.56 21.07 0.00 3.61
3113 3481 4.533222 AGTCTTTGGACAATTTAAACGCG 58.467 39.130 3.53 3.53 44.36 6.01
3117 3485 5.908499 TCTTTGGACAATTTAAACGCGTTAC 59.092 36.000 26.87 0.90 0.00 2.50
3287 3656 9.784531 ATCACAAGTATTAATCTCCAATACAGG 57.215 33.333 7.69 2.76 40.03 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.142381 ACGAAGTTGACGAGATCATGATCA 60.142 41.667 31.99 14.30 37.78 2.92
54 55 3.650070 TGCGATTTGGTTAAATGCACA 57.350 38.095 0.00 0.00 36.66 4.57
143 149 8.345724 TGGGTTTTGCATTGCATAATTTAAAT 57.654 26.923 12.95 0.00 38.76 1.40
147 153 6.040166 TGTTTGGGTTTTGCATTGCATAATTT 59.960 30.769 12.95 0.00 38.76 1.82
151 157 4.077300 TGTTTGGGTTTTGCATTGCATA 57.923 36.364 12.95 4.75 38.76 3.14
213 254 1.299541 AGAATAATCCCAAGCGCGTG 58.700 50.000 16.87 16.87 0.00 5.34
262 307 5.786264 AGCACTACTACTGTTGTTGTACT 57.214 39.130 8.74 6.54 34.32 2.73
263 308 9.070149 GTTATAGCACTACTACTGTTGTTGTAC 57.930 37.037 8.74 4.58 34.32 2.90
264 309 7.964559 CGTTATAGCACTACTACTGTTGTTGTA 59.035 37.037 8.74 0.00 34.32 2.41
265 310 6.805271 CGTTATAGCACTACTACTGTTGTTGT 59.195 38.462 0.00 1.99 36.27 3.32
331 395 3.195698 GCGTGCTCGTCCATTCCC 61.196 66.667 10.18 0.00 39.49 3.97
370 439 2.776072 CGACGTGCGACCATTTCC 59.224 61.111 0.00 0.00 44.57 3.13
507 577 3.516578 CTCCCAAGTTGGAGTCGAC 57.483 57.895 24.06 7.70 45.76 4.20
515 585 9.173021 TGAATTACATACATTACTCCCAAGTTG 57.827 33.333 0.00 0.00 36.92 3.16
524 594 9.944376 AGCGGATTATGAATTACATACATTACT 57.056 29.630 0.00 0.00 40.62 2.24
527 597 9.944376 ACTAGCGGATTATGAATTACATACATT 57.056 29.630 0.00 0.00 40.62 2.71
528 598 9.587772 GACTAGCGGATTATGAATTACATACAT 57.412 33.333 0.00 0.00 40.62 2.29
529 599 8.581578 TGACTAGCGGATTATGAATTACATACA 58.418 33.333 0.00 0.00 40.62 2.29
530 600 8.981724 TGACTAGCGGATTATGAATTACATAC 57.018 34.615 0.00 0.00 40.62 2.39
532 602 9.507329 AATTGACTAGCGGATTATGAATTACAT 57.493 29.630 0.00 0.00 42.39 2.29
534 604 9.813080 GAAATTGACTAGCGGATTATGAATTAC 57.187 33.333 0.00 0.00 0.00 1.89
536 606 8.682936 AGAAATTGACTAGCGGATTATGAATT 57.317 30.769 0.00 0.00 0.00 2.17
537 607 8.682936 AAGAAATTGACTAGCGGATTATGAAT 57.317 30.769 0.00 0.00 0.00 2.57
538 608 8.506168 AAAGAAATTGACTAGCGGATTATGAA 57.494 30.769 0.00 0.00 0.00 2.57
541 611 7.442666 GGAGAAAGAAATTGACTAGCGGATTAT 59.557 37.037 0.00 0.00 0.00 1.28
542 612 6.761714 GGAGAAAGAAATTGACTAGCGGATTA 59.238 38.462 0.00 0.00 0.00 1.75
543 613 5.586643 GGAGAAAGAAATTGACTAGCGGATT 59.413 40.000 0.00 0.00 0.00 3.01
545 615 4.223032 AGGAGAAAGAAATTGACTAGCGGA 59.777 41.667 0.00 0.00 0.00 5.54
546 616 4.508662 AGGAGAAAGAAATTGACTAGCGG 58.491 43.478 0.00 0.00 0.00 5.52
547 617 5.520649 GGTAGGAGAAAGAAATTGACTAGCG 59.479 44.000 0.00 0.00 0.00 4.26
548 618 6.314152 GTGGTAGGAGAAAGAAATTGACTAGC 59.686 42.308 0.00 0.00 0.00 3.42
549 619 7.386851 TGTGGTAGGAGAAAGAAATTGACTAG 58.613 38.462 0.00 0.00 0.00 2.57
550 620 7.311092 TGTGGTAGGAGAAAGAAATTGACTA 57.689 36.000 0.00 0.00 0.00 2.59
551 621 6.187727 TGTGGTAGGAGAAAGAAATTGACT 57.812 37.500 0.00 0.00 0.00 3.41
552 622 6.877611 TTGTGGTAGGAGAAAGAAATTGAC 57.122 37.500 0.00 0.00 0.00 3.18
553 623 6.264518 GGTTTGTGGTAGGAGAAAGAAATTGA 59.735 38.462 0.00 0.00 0.00 2.57
554 624 6.447162 GGTTTGTGGTAGGAGAAAGAAATTG 58.553 40.000 0.00 0.00 0.00 2.32
555 625 5.538813 GGGTTTGTGGTAGGAGAAAGAAATT 59.461 40.000 0.00 0.00 0.00 1.82
556 626 5.077564 GGGTTTGTGGTAGGAGAAAGAAAT 58.922 41.667 0.00 0.00 0.00 2.17
557 627 4.167307 AGGGTTTGTGGTAGGAGAAAGAAA 59.833 41.667 0.00 0.00 0.00 2.52
558 628 3.720002 AGGGTTTGTGGTAGGAGAAAGAA 59.280 43.478 0.00 0.00 0.00 2.52
560 630 3.790089 AGGGTTTGTGGTAGGAGAAAG 57.210 47.619 0.00 0.00 0.00 2.62
573 694 4.634443 CGTAAGTATCAGGGAAAGGGTTTG 59.366 45.833 0.00 0.00 0.00 2.93
657 782 7.757941 TGAAGATTGTGGACAATGATGTAAA 57.242 32.000 9.73 0.00 45.72 2.01
875 1001 1.220477 GAACCCAGCTGCTCCTCTC 59.780 63.158 8.66 0.00 0.00 3.20
876 1002 1.130054 TTGAACCCAGCTGCTCCTCT 61.130 55.000 8.66 0.00 0.00 3.69
877 1003 0.250901 TTTGAACCCAGCTGCTCCTC 60.251 55.000 8.66 2.31 0.00 3.71
878 1004 0.538287 GTTTGAACCCAGCTGCTCCT 60.538 55.000 8.66 0.00 0.00 3.69
879 1005 1.527433 GGTTTGAACCCAGCTGCTCC 61.527 60.000 8.66 0.00 43.43 4.70
880 1006 1.959848 GGTTTGAACCCAGCTGCTC 59.040 57.895 8.66 4.96 43.43 4.26
972 1111 5.045869 TCCTGGTAAACTTTGAGGTCATAGG 60.046 44.000 0.00 0.00 30.64 2.57
973 1112 6.049955 TCCTGGTAAACTTTGAGGTCATAG 57.950 41.667 0.00 0.00 0.00 2.23
975 1114 4.993705 TCCTGGTAAACTTTGAGGTCAT 57.006 40.909 0.00 0.00 0.00 3.06
976 1115 4.714632 CTTCCTGGTAAACTTTGAGGTCA 58.285 43.478 0.00 0.00 0.00 4.02
1043 1246 2.105960 CTTACTGCTAATGGCGCGGC 62.106 60.000 27.61 27.61 45.43 6.53
1059 1262 0.249868 CTCGATCGGCAATGGGCTTA 60.250 55.000 16.41 0.00 44.01 3.09
1083 1289 2.658802 CGCTATGCACACACGATATCTC 59.341 50.000 0.34 0.00 0.00 2.75
1106 1312 2.690881 AGGTTCCCCATGCCGCTA 60.691 61.111 0.00 0.00 0.00 4.26
1158 1365 2.819595 CGCCATCACCACCTTCCG 60.820 66.667 0.00 0.00 0.00 4.30
1616 1841 4.748144 GGCTTCCACCCCCTGCAG 62.748 72.222 6.78 6.78 0.00 4.41
1720 1980 2.943036 AGGAGAGACTAGATCCCGAC 57.057 55.000 0.00 0.00 33.30 4.79
1723 1983 3.895041 CAAGGAAGGAGAGACTAGATCCC 59.105 52.174 0.00 0.00 33.30 3.85
1737 1997 4.944619 AAAGAAAAGGAAGCAAGGAAGG 57.055 40.909 0.00 0.00 0.00 3.46
1805 2067 7.628769 TTGAATGAAGTATAGCAAATGAGCA 57.371 32.000 0.00 0.00 36.85 4.26
1808 2070 8.468399 TGCATTTGAATGAAGTATAGCAAATGA 58.532 29.630 22.69 10.30 44.35 2.57
1809 2071 8.637281 TGCATTTGAATGAAGTATAGCAAATG 57.363 30.769 17.12 17.12 44.37 2.32
1810 2072 9.256477 CATGCATTTGAATGAAGTATAGCAAAT 57.744 29.630 7.86 0.00 38.70 2.32
1812 2074 7.703197 CACATGCATTTGAATGAAGTATAGCAA 59.297 33.333 7.05 0.00 38.70 3.91
1813 2075 7.067251 TCACATGCATTTGAATGAAGTATAGCA 59.933 33.333 13.07 0.00 38.70 3.49
1814 2076 7.420002 TCACATGCATTTGAATGAAGTATAGC 58.580 34.615 13.07 0.00 38.70 2.97
1815 2077 9.394477 CATCACATGCATTTGAATGAAGTATAG 57.606 33.333 18.83 0.00 38.70 1.31
1818 2080 7.337436 TCTCATCACATGCATTTGAATGAAGTA 59.663 33.333 18.83 8.97 38.70 2.24
1819 2081 6.152154 TCTCATCACATGCATTTGAATGAAGT 59.848 34.615 18.83 0.00 38.70 3.01
1820 2082 6.560711 TCTCATCACATGCATTTGAATGAAG 58.439 36.000 18.83 13.08 38.70 3.02
1821 2083 6.518208 TCTCATCACATGCATTTGAATGAA 57.482 33.333 18.83 10.71 38.70 2.57
1822 2084 6.709018 ATCTCATCACATGCATTTGAATGA 57.291 33.333 18.83 18.63 38.70 2.57
1823 2085 7.591426 CACTATCTCATCACATGCATTTGAATG 59.409 37.037 18.83 16.02 37.11 2.67
1824 2086 7.649057 CACTATCTCATCACATGCATTTGAAT 58.351 34.615 18.83 10.55 0.00 2.57
1825 2087 6.459161 GCACTATCTCATCACATGCATTTGAA 60.459 38.462 18.83 3.66 0.00 2.69
1826 2088 5.008316 GCACTATCTCATCACATGCATTTGA 59.992 40.000 17.40 17.40 0.00 2.69
1827 2089 5.212934 GCACTATCTCATCACATGCATTTG 58.787 41.667 6.50 6.50 0.00 2.32
1977 2260 4.091424 GCTATTTGTTGTCATCAGCGAAC 58.909 43.478 0.00 0.00 32.52 3.95
2062 2349 5.946486 AGAAGAAAGGTGAAATGAGAACCT 58.054 37.500 0.00 0.00 46.40 3.50
2063 2350 5.765182 TGAGAAGAAAGGTGAAATGAGAACC 59.235 40.000 0.00 0.00 0.00 3.62
2064 2351 6.293680 GGTGAGAAGAAAGGTGAAATGAGAAC 60.294 42.308 0.00 0.00 0.00 3.01
2065 2352 5.765182 GGTGAGAAGAAAGGTGAAATGAGAA 59.235 40.000 0.00 0.00 0.00 2.87
2066 2353 5.163205 TGGTGAGAAGAAAGGTGAAATGAGA 60.163 40.000 0.00 0.00 0.00 3.27
2067 2354 5.065914 TGGTGAGAAGAAAGGTGAAATGAG 58.934 41.667 0.00 0.00 0.00 2.90
2068 2355 5.047566 TGGTGAGAAGAAAGGTGAAATGA 57.952 39.130 0.00 0.00 0.00 2.57
2069 2356 5.972107 ATGGTGAGAAGAAAGGTGAAATG 57.028 39.130 0.00 0.00 0.00 2.32
2070 2357 5.478332 GGAATGGTGAGAAGAAAGGTGAAAT 59.522 40.000 0.00 0.00 0.00 2.17
2071 2358 4.827284 GGAATGGTGAGAAGAAAGGTGAAA 59.173 41.667 0.00 0.00 0.00 2.69
2072 2359 4.104738 AGGAATGGTGAGAAGAAAGGTGAA 59.895 41.667 0.00 0.00 0.00 3.18
2073 2360 3.652869 AGGAATGGTGAGAAGAAAGGTGA 59.347 43.478 0.00 0.00 0.00 4.02
2074 2361 4.026356 AGGAATGGTGAGAAGAAAGGTG 57.974 45.455 0.00 0.00 0.00 4.00
2075 2362 4.657013 GAAGGAATGGTGAGAAGAAAGGT 58.343 43.478 0.00 0.00 0.00 3.50
2076 2363 3.686726 CGAAGGAATGGTGAGAAGAAAGG 59.313 47.826 0.00 0.00 0.00 3.11
2077 2364 4.319177 ACGAAGGAATGGTGAGAAGAAAG 58.681 43.478 0.00 0.00 0.00 2.62
2078 2365 4.315803 GACGAAGGAATGGTGAGAAGAAA 58.684 43.478 0.00 0.00 0.00 2.52
2079 2366 3.306780 GGACGAAGGAATGGTGAGAAGAA 60.307 47.826 0.00 0.00 0.00 2.52
2080 2367 2.233922 GGACGAAGGAATGGTGAGAAGA 59.766 50.000 0.00 0.00 0.00 2.87
2081 2368 2.028112 TGGACGAAGGAATGGTGAGAAG 60.028 50.000 0.00 0.00 0.00 2.85
2082 2369 1.974957 TGGACGAAGGAATGGTGAGAA 59.025 47.619 0.00 0.00 0.00 2.87
2083 2370 1.639722 TGGACGAAGGAATGGTGAGA 58.360 50.000 0.00 0.00 0.00 3.27
2084 2371 2.076863 GTTGGACGAAGGAATGGTGAG 58.923 52.381 0.00 0.00 0.00 3.51
2085 2372 1.271163 GGTTGGACGAAGGAATGGTGA 60.271 52.381 0.00 0.00 0.00 4.02
2086 2373 1.165270 GGTTGGACGAAGGAATGGTG 58.835 55.000 0.00 0.00 0.00 4.17
2087 2374 1.064825 AGGTTGGACGAAGGAATGGT 58.935 50.000 0.00 0.00 0.00 3.55
2088 2375 2.200373 AAGGTTGGACGAAGGAATGG 57.800 50.000 0.00 0.00 0.00 3.16
2089 2376 3.146066 TGAAAGGTTGGACGAAGGAATG 58.854 45.455 0.00 0.00 0.00 2.67
2090 2377 3.502123 TGAAAGGTTGGACGAAGGAAT 57.498 42.857 0.00 0.00 0.00 3.01
2091 2378 3.146066 CATGAAAGGTTGGACGAAGGAA 58.854 45.455 0.00 0.00 0.00 3.36
2092 2379 2.105821 ACATGAAAGGTTGGACGAAGGA 59.894 45.455 0.00 0.00 0.00 3.36
2093 2380 2.504367 ACATGAAAGGTTGGACGAAGG 58.496 47.619 0.00 0.00 0.00 3.46
2094 2381 3.435671 GGTACATGAAAGGTTGGACGAAG 59.564 47.826 0.00 0.00 28.09 3.79
2095 2382 3.404899 GGTACATGAAAGGTTGGACGAA 58.595 45.455 0.00 0.00 28.09 3.85
2096 2383 2.289819 GGGTACATGAAAGGTTGGACGA 60.290 50.000 0.00 0.00 28.09 4.20
2097 2384 2.081462 GGGTACATGAAAGGTTGGACG 58.919 52.381 0.00 0.00 28.09 4.79
2098 2385 3.434940 AGGGTACATGAAAGGTTGGAC 57.565 47.619 0.00 0.00 28.09 4.02
2099 2386 4.463050 AAAGGGTACATGAAAGGTTGGA 57.537 40.909 0.00 0.00 28.09 3.53
2100 2387 4.320935 CGAAAAGGGTACATGAAAGGTTGG 60.321 45.833 0.00 0.00 28.09 3.77
2101 2388 4.277423 ACGAAAAGGGTACATGAAAGGTTG 59.723 41.667 0.00 0.00 28.09 3.77
2102 2389 4.466827 ACGAAAAGGGTACATGAAAGGTT 58.533 39.130 0.00 0.00 28.09 3.50
2103 2390 4.094830 ACGAAAAGGGTACATGAAAGGT 57.905 40.909 0.00 0.00 32.53 3.50
2104 2391 5.009210 TGAAACGAAAAGGGTACATGAAAGG 59.991 40.000 0.00 0.00 0.00 3.11
2105 2392 6.067263 TGAAACGAAAAGGGTACATGAAAG 57.933 37.500 0.00 0.00 0.00 2.62
2106 2393 6.452494 TTGAAACGAAAAGGGTACATGAAA 57.548 33.333 0.00 0.00 0.00 2.69
2107 2394 6.452494 TTTGAAACGAAAAGGGTACATGAA 57.548 33.333 0.00 0.00 0.00 2.57
2108 2395 6.452494 TTTTGAAACGAAAAGGGTACATGA 57.548 33.333 0.00 0.00 0.00 3.07
2109 2396 8.804688 TTATTTTGAAACGAAAAGGGTACATG 57.195 30.769 0.00 0.00 0.00 3.21
2110 2397 8.635328 ACTTATTTTGAAACGAAAAGGGTACAT 58.365 29.630 0.00 0.00 0.00 2.29
2111 2398 7.916450 CACTTATTTTGAAACGAAAAGGGTACA 59.084 33.333 0.00 0.00 0.00 2.90
2112 2399 8.130469 TCACTTATTTTGAAACGAAAAGGGTAC 58.870 33.333 0.00 0.00 0.00 3.34
2113 2400 8.130469 GTCACTTATTTTGAAACGAAAAGGGTA 58.870 33.333 0.00 0.00 0.00 3.69
2114 2401 6.976349 GTCACTTATTTTGAAACGAAAAGGGT 59.024 34.615 0.00 0.00 0.00 4.34
2115 2402 7.200455 AGTCACTTATTTTGAAACGAAAAGGG 58.800 34.615 0.00 0.00 0.00 3.95
2116 2403 7.913297 TGAGTCACTTATTTTGAAACGAAAAGG 59.087 33.333 0.00 0.00 0.00 3.11
2117 2404 8.835467 TGAGTCACTTATTTTGAAACGAAAAG 57.165 30.769 0.00 0.00 0.00 2.27
2118 2405 9.284594 CTTGAGTCACTTATTTTGAAACGAAAA 57.715 29.630 0.00 0.00 0.00 2.29
2119 2406 8.455682 ACTTGAGTCACTTATTTTGAAACGAAA 58.544 29.630 0.00 0.00 0.00 3.46
2120 2407 7.981142 ACTTGAGTCACTTATTTTGAAACGAA 58.019 30.769 0.00 0.00 0.00 3.85
2121 2408 7.548196 ACTTGAGTCACTTATTTTGAAACGA 57.452 32.000 0.00 0.00 0.00 3.85
2122 2409 8.523464 CAAACTTGAGTCACTTATTTTGAAACG 58.477 33.333 0.00 0.00 0.00 3.60
2123 2410 9.353999 ACAAACTTGAGTCACTTATTTTGAAAC 57.646 29.630 11.12 0.00 0.00 2.78
2125 2412 9.997482 GTACAAACTTGAGTCACTTATTTTGAA 57.003 29.630 11.12 0.00 0.00 2.69
2126 2413 9.391006 AGTACAAACTTGAGTCACTTATTTTGA 57.609 29.630 11.12 0.00 29.00 2.69
2131 2418 9.477484 CAGTTAGTACAAACTTGAGTCACTTAT 57.523 33.333 0.00 0.00 37.61 1.73
2132 2419 8.472413 ACAGTTAGTACAAACTTGAGTCACTTA 58.528 33.333 0.00 0.00 37.61 2.24
2133 2420 7.277981 CACAGTTAGTACAAACTTGAGTCACTT 59.722 37.037 0.00 0.00 37.61 3.16
2134 2421 6.757010 CACAGTTAGTACAAACTTGAGTCACT 59.243 38.462 0.00 0.00 37.61 3.41
2135 2422 6.534079 ACACAGTTAGTACAAACTTGAGTCAC 59.466 38.462 0.00 0.00 37.61 3.67
2136 2423 6.636705 ACACAGTTAGTACAAACTTGAGTCA 58.363 36.000 0.00 0.00 37.61 3.41
2137 2424 8.813643 ATACACAGTTAGTACAAACTTGAGTC 57.186 34.615 0.00 0.00 37.61 3.36
2143 2430 9.774413 AGCTTTAATACACAGTTAGTACAAACT 57.226 29.630 0.00 0.00 40.33 2.66
2153 2440 9.774413 ACTTTGTACTAGCTTTAATACACAGTT 57.226 29.630 0.00 0.00 35.89 3.16
2154 2441 9.774413 AACTTTGTACTAGCTTTAATACACAGT 57.226 29.630 0.00 2.18 39.20 3.55
2156 2443 9.767228 TCAACTTTGTACTAGCTTTAATACACA 57.233 29.630 0.00 0.00 0.00 3.72
2158 2445 9.991906 ACTCAACTTTGTACTAGCTTTAATACA 57.008 29.630 0.00 0.00 0.00 2.29
2161 2448 8.989980 GTGACTCAACTTTGTACTAGCTTTAAT 58.010 33.333 0.00 0.00 0.00 1.40
2162 2449 8.202137 AGTGACTCAACTTTGTACTAGCTTTAA 58.798 33.333 0.00 0.00 0.00 1.52
2163 2450 7.723324 AGTGACTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
2164 2451 6.583562 AGTGACTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
2165 2452 6.163135 AGTGACTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
2166 2453 5.793030 AGTGACTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2167 2454 7.941795 TTAAGTGACTCAACTTTGTACTAGC 57.058 36.000 0.00 0.00 40.77 3.42
2170 2457 8.621286 CCAAATTAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2171 2458 7.860872 CCCAAATTAAGTGACTCAACTTTGTAC 59.139 37.037 8.71 0.00 40.77 2.90
2172 2459 7.776030 TCCCAAATTAAGTGACTCAACTTTGTA 59.224 33.333 8.71 0.00 40.77 2.41
2173 2460 6.605594 TCCCAAATTAAGTGACTCAACTTTGT 59.394 34.615 8.71 0.00 40.77 2.83
2174 2461 6.918022 GTCCCAAATTAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2175 2462 6.238648 CGTCCCAAATTAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2176 2463 5.238650 CGTCCCAAATTAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2177 2464 4.755123 CGTCCCAAATTAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2178 2465 4.083484 CCGTCCCAAATTAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2179 2466 4.069304 CCGTCCCAAATTAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2180 2467 3.325425 TCCGTCCCAAATTAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2181 2468 3.933332 CTCCGTCCCAAATTAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2182 2469 3.307480 CCTCCGTCCCAAATTAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2183 2470 3.007635 CCTCCGTCCCAAATTAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2184 2471 2.026636 CCCTCCGTCCCAAATTAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2185 2472 2.026636 TCCCTCCGTCCCAAATTAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2186 2473 2.238898 CTCCCTCCGTCCCAAATTAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2187 2474 2.238898 ACTCCCTCCGTCCCAAATTAAG 59.761 50.000 0.00 0.00 0.00 1.85
2188 2475 2.271777 ACTCCCTCCGTCCCAAATTAA 58.728 47.619 0.00 0.00 0.00 1.40
2189 2476 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
2190 2477 1.961133 TACTCCCTCCGTCCCAAATT 58.039 50.000 0.00 0.00 0.00 1.82
2191 2478 2.191981 ATACTCCCTCCGTCCCAAAT 57.808 50.000 0.00 0.00 0.00 2.32
2192 2479 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2193 2480 2.178325 TCATATACTCCCTCCGTCCCAA 59.822 50.000 0.00 0.00 0.00 4.12
2194 2481 1.784593 TCATATACTCCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
2195 2482 2.599408 TCATATACTCCCTCCGTCCC 57.401 55.000 0.00 0.00 0.00 4.46
2196 2483 5.892119 TGATTATCATATACTCCCTCCGTCC 59.108 44.000 0.00 0.00 0.00 4.79
2197 2484 7.406031 TTGATTATCATATACTCCCTCCGTC 57.594 40.000 0.00 0.00 0.00 4.79
2198 2485 7.619698 TGATTGATTATCATATACTCCCTCCGT 59.380 37.037 0.00 0.00 38.35 4.69
2199 2486 8.011844 TGATTGATTATCATATACTCCCTCCG 57.988 38.462 0.00 0.00 38.35 4.63
2200 2487 8.986991 ACTGATTGATTATCATATACTCCCTCC 58.013 37.037 0.00 0.00 42.26 4.30
2234 2521 9.588096 AAAGTGGAATTGATTTAGAAGGTAAGT 57.412 29.630 0.00 0.00 0.00 2.24
2289 2576 9.781834 CAAATTTTGCTCGTGAATTACCTTATA 57.218 29.630 0.00 0.00 0.00 0.98
2290 2577 8.519526 TCAAATTTTGCTCGTGAATTACCTTAT 58.480 29.630 4.19 0.00 0.00 1.73
2291 2578 7.877003 TCAAATTTTGCTCGTGAATTACCTTA 58.123 30.769 4.19 0.00 0.00 2.69
2292 2579 6.744112 TCAAATTTTGCTCGTGAATTACCTT 58.256 32.000 4.19 0.00 0.00 3.50
2293 2580 6.325919 TCAAATTTTGCTCGTGAATTACCT 57.674 33.333 4.19 0.00 0.00 3.08
2294 2581 8.682128 TTATCAAATTTTGCTCGTGAATTACC 57.318 30.769 4.19 0.00 0.00 2.85
2295 2582 9.937577 GTTTATCAAATTTTGCTCGTGAATTAC 57.062 29.630 4.19 0.00 0.00 1.89
2296 2583 9.684448 TGTTTATCAAATTTTGCTCGTGAATTA 57.316 25.926 4.19 0.00 0.00 1.40
2297 2584 8.586570 TGTTTATCAAATTTTGCTCGTGAATT 57.413 26.923 4.19 0.00 0.00 2.17
2298 2585 8.761575 ATGTTTATCAAATTTTGCTCGTGAAT 57.238 26.923 4.19 0.00 0.00 2.57
2299 2586 8.586570 AATGTTTATCAAATTTTGCTCGTGAA 57.413 26.923 4.19 0.00 0.00 3.18
2300 2587 8.586570 AAATGTTTATCAAATTTTGCTCGTGA 57.413 26.923 4.19 0.00 0.00 4.35
2327 2614 9.715123 CTGTCAATAATAATGCGATTGTGTAAA 57.285 29.630 0.00 0.00 33.27 2.01
2328 2615 8.341903 CCTGTCAATAATAATGCGATTGTGTAA 58.658 33.333 0.00 0.00 33.27 2.41
2329 2616 7.497579 ACCTGTCAATAATAATGCGATTGTGTA 59.502 33.333 0.00 0.00 33.27 2.90
2330 2617 6.318648 ACCTGTCAATAATAATGCGATTGTGT 59.681 34.615 0.00 0.00 33.27 3.72
2331 2618 6.728200 ACCTGTCAATAATAATGCGATTGTG 58.272 36.000 0.00 0.00 33.27 3.33
2332 2619 6.942532 ACCTGTCAATAATAATGCGATTGT 57.057 33.333 0.00 0.00 33.27 2.71
2333 2620 9.897744 ATTTACCTGTCAATAATAATGCGATTG 57.102 29.630 0.00 0.00 32.85 2.67
2335 2622 9.283768 TGATTTACCTGTCAATAATAATGCGAT 57.716 29.630 0.00 0.00 0.00 4.58
2336 2623 8.556194 GTGATTTACCTGTCAATAATAATGCGA 58.444 33.333 0.00 0.00 0.00 5.10
2337 2624 8.341903 TGTGATTTACCTGTCAATAATAATGCG 58.658 33.333 0.00 0.00 0.00 4.73
2341 2628 9.461312 AGCTTGTGATTTACCTGTCAATAATAA 57.539 29.630 0.00 0.00 0.00 1.40
2343 2630 7.944729 AGCTTGTGATTTACCTGTCAATAAT 57.055 32.000 0.00 0.00 0.00 1.28
2344 2631 8.726988 GTTAGCTTGTGATTTACCTGTCAATAA 58.273 33.333 0.00 0.00 0.00 1.40
2345 2632 7.064134 CGTTAGCTTGTGATTTACCTGTCAATA 59.936 37.037 0.00 0.00 0.00 1.90
2346 2633 6.128282 CGTTAGCTTGTGATTTACCTGTCAAT 60.128 38.462 0.00 0.00 0.00 2.57
2347 2634 5.178623 CGTTAGCTTGTGATTTACCTGTCAA 59.821 40.000 0.00 0.00 0.00 3.18
2348 2635 4.688879 CGTTAGCTTGTGATTTACCTGTCA 59.311 41.667 0.00 0.00 0.00 3.58
2349 2636 4.689345 ACGTTAGCTTGTGATTTACCTGTC 59.311 41.667 0.00 0.00 0.00 3.51
2350 2637 4.638304 ACGTTAGCTTGTGATTTACCTGT 58.362 39.130 0.00 0.00 0.00 4.00
2351 2638 5.867716 AGTACGTTAGCTTGTGATTTACCTG 59.132 40.000 0.00 0.00 0.00 4.00
2352 2639 6.034161 AGTACGTTAGCTTGTGATTTACCT 57.966 37.500 0.00 0.00 0.00 3.08
2353 2640 7.253422 TCTAGTACGTTAGCTTGTGATTTACC 58.747 38.462 0.00 0.00 0.00 2.85
2354 2641 8.679288 TTCTAGTACGTTAGCTTGTGATTTAC 57.321 34.615 0.00 0.00 0.00 2.01
2376 2663 9.733556 TGCGTTGTAATGGGATATAAATATTCT 57.266 29.630 0.00 0.00 0.00 2.40
2377 2664 9.769093 GTGCGTTGTAATGGGATATAAATATTC 57.231 33.333 0.00 0.00 0.00 1.75
2378 2665 8.447833 CGTGCGTTGTAATGGGATATAAATATT 58.552 33.333 0.00 0.00 0.00 1.28
2379 2666 7.065324 CCGTGCGTTGTAATGGGATATAAATAT 59.935 37.037 0.00 0.00 0.00 1.28
2380 2667 6.369340 CCGTGCGTTGTAATGGGATATAAATA 59.631 38.462 0.00 0.00 0.00 1.40
2381 2668 5.180492 CCGTGCGTTGTAATGGGATATAAAT 59.820 40.000 0.00 0.00 0.00 1.40
2382 2669 4.512198 CCGTGCGTTGTAATGGGATATAAA 59.488 41.667 0.00 0.00 0.00 1.40
2383 2670 4.059511 CCGTGCGTTGTAATGGGATATAA 58.940 43.478 0.00 0.00 0.00 0.98
2384 2671 3.555377 CCCGTGCGTTGTAATGGGATATA 60.555 47.826 0.00 0.00 44.34 0.86
2385 2672 2.489971 CCGTGCGTTGTAATGGGATAT 58.510 47.619 0.00 0.00 0.00 1.63
2386 2673 1.473610 CCCGTGCGTTGTAATGGGATA 60.474 52.381 0.00 0.00 44.34 2.59
2387 2674 0.746563 CCCGTGCGTTGTAATGGGAT 60.747 55.000 0.00 0.00 44.34 3.85
2388 2675 1.376166 CCCGTGCGTTGTAATGGGA 60.376 57.895 0.00 0.00 44.34 4.37
2389 2676 3.046497 GCCCGTGCGTTGTAATGGG 62.046 63.158 0.00 0.00 44.39 4.00
2390 2677 1.653094 ATGCCCGTGCGTTGTAATGG 61.653 55.000 0.00 0.00 41.78 3.16
2391 2678 0.170116 AATGCCCGTGCGTTGTAATG 59.830 50.000 0.00 0.00 44.90 1.90
2392 2679 2.562125 AATGCCCGTGCGTTGTAAT 58.438 47.368 0.00 0.00 44.90 1.89
2393 2680 4.066694 AATGCCCGTGCGTTGTAA 57.933 50.000 0.00 0.00 44.90 2.41
2398 2685 1.004320 TAGAACAATGCCCGTGCGT 60.004 52.632 0.00 0.00 41.78 5.24
2399 2686 1.019278 ACTAGAACAATGCCCGTGCG 61.019 55.000 0.00 0.00 41.78 5.34
2400 2687 1.165270 AACTAGAACAATGCCCGTGC 58.835 50.000 0.00 0.00 38.26 5.34
2401 2688 3.857052 TCTAACTAGAACAATGCCCGTG 58.143 45.455 0.00 0.00 0.00 4.94
2402 2689 4.755266 ATCTAACTAGAACAATGCCCGT 57.245 40.909 0.00 0.00 35.69 5.28
2403 2690 7.548196 TTTTATCTAACTAGAACAATGCCCG 57.452 36.000 0.00 0.00 35.69 6.13
2404 2691 9.120538 TCATTTTATCTAACTAGAACAATGCCC 57.879 33.333 0.00 0.00 35.69 5.36
2405 2692 9.937175 GTCATTTTATCTAACTAGAACAATGCC 57.063 33.333 0.00 0.00 35.69 4.40
2481 2768 6.872020 TCAGGAGAATTACTTTTGTTACTCGG 59.128 38.462 0.00 0.00 0.00 4.63
2482 2769 7.148623 GGTCAGGAGAATTACTTTTGTTACTCG 60.149 40.741 0.00 0.00 0.00 4.18
2497 2784 2.238144 CTCACATGTGGGTCAGGAGAAT 59.762 50.000 25.16 0.00 28.63 2.40
2516 2803 2.486191 CCCCTCATTGCCTATGTCACTC 60.486 54.545 0.00 0.00 35.64 3.51
2530 2817 4.044065 TCTGTGGACATTTTTACCCCTCAT 59.956 41.667 0.00 0.00 0.00 2.90
2531 2818 3.396276 TCTGTGGACATTTTTACCCCTCA 59.604 43.478 0.00 0.00 0.00 3.86
2550 2837 3.415212 TGACCTTCTCCAAAGCATTCTG 58.585 45.455 0.00 0.00 0.00 3.02
2582 2923 4.330250 CCTTCATGATGTTTCTGTCCAGT 58.670 43.478 0.00 0.00 0.00 4.00
2589 2930 4.646492 GGCAATACCCTTCATGATGTTTCT 59.354 41.667 0.00 0.00 0.00 2.52
2610 2954 1.081242 CGTTTGGTGTGCTGATGGC 60.081 57.895 0.00 0.00 42.22 4.40
2619 2963 1.454539 CCCCTCTTCCGTTTGGTGT 59.545 57.895 0.00 0.00 36.30 4.16
2625 2969 0.185175 AACTTTGCCCCTCTTCCGTT 59.815 50.000 0.00 0.00 0.00 4.44
2814 3158 0.598065 AAGCTCACCCAATTCAACGC 59.402 50.000 0.00 0.00 0.00 4.84
2852 3196 1.625818 ACTCCATCTTGTGTGTCTCCC 59.374 52.381 0.00 0.00 0.00 4.30
2886 3254 8.956426 CAAACACCTTCCTCAAGCTATTAATTA 58.044 33.333 0.00 0.00 0.00 1.40
2919 3287 5.926542 GCTATACTCCGTAGAAATGCAATCA 59.073 40.000 0.00 0.00 0.00 2.57
2974 3342 1.153086 GCGCCCAGTTCATCTCCAT 60.153 57.895 0.00 0.00 0.00 3.41
2985 3353 1.033746 ATCATGTTCAAGGCGCCCAG 61.034 55.000 26.15 16.88 0.00 4.45
3038 3406 8.937835 TCTGTGATCTCCATAATTTTCTCCATA 58.062 33.333 0.00 0.00 0.00 2.74
3103 3471 6.691818 TCAAACACAATGTAACGCGTTTAAAT 59.308 30.769 31.50 17.71 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.