Multiple sequence alignment - TraesCS4D01G186500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G186500 chr4D 100.000 2690 0 0 1 2690 324008495 324011184 0.000000e+00 4968.0
1 TraesCS4D01G186500 chr4D 89.506 162 14 3 2450 2609 463386739 463386579 4.540000e-48 202.0
2 TraesCS4D01G186500 chr4D 93.548 62 3 1 2416 2477 324010832 324010892 1.030000e-14 91.6
3 TraesCS4D01G186500 chr4D 93.548 62 3 1 2338 2398 324010910 324010971 1.030000e-14 91.6
4 TraesCS4D01G186500 chr4B 92.372 839 38 16 717 1532 404556995 404557830 0.000000e+00 1171.0
5 TraesCS4D01G186500 chr4B 91.797 256 8 8 1517 1769 404557893 404558138 7.130000e-91 344.0
6 TraesCS4D01G186500 chr4A 91.588 844 32 11 717 1527 147446297 147445460 0.000000e+00 1129.0
7 TraesCS4D01G186500 chr4A 91.152 712 38 12 1 699 699974489 699975188 0.000000e+00 942.0
8 TraesCS4D01G186500 chr4A 83.741 818 77 23 1517 2317 147445389 147444611 0.000000e+00 723.0
9 TraesCS4D01G186500 chr4A 90.000 160 14 2 2446 2603 656486604 656486445 3.510000e-49 206.0
10 TraesCS4D01G186500 chr3D 94.930 710 24 7 1 699 335217497 335218205 0.000000e+00 1101.0
11 TraesCS4D01G186500 chr3D 94.583 480 20 5 226 699 568485293 568484814 0.000000e+00 737.0
12 TraesCS4D01G186500 chr3D 81.250 80 13 2 2107 2184 388345609 388345530 2.240000e-06 63.9
13 TraesCS4D01G186500 chr5D 94.499 709 27 7 1 699 69679865 69680571 0.000000e+00 1083.0
14 TraesCS4D01G186500 chr7D 94.318 704 28 6 1 693 573802311 573803013 0.000000e+00 1068.0
15 TraesCS4D01G186500 chr1A 93.935 709 33 6 1 699 163099624 163100332 0.000000e+00 1062.0
16 TraesCS4D01G186500 chr1A 90.184 163 11 5 2450 2609 541657685 541657525 9.760000e-50 207.0
17 TraesCS4D01G186500 chr7B 93.352 707 35 7 1 699 646033648 646032946 0.000000e+00 1035.0
18 TraesCS4D01G186500 chr7B 100.000 28 0 0 2371 2398 537469397 537469424 5.000000e-03 52.8
19 TraesCS4D01G186500 chr6B 92.928 707 36 8 1 699 124628551 124627851 0.000000e+00 1016.0
20 TraesCS4D01G186500 chr1B 92.938 708 35 8 7 699 685911467 685912174 0.000000e+00 1016.0
21 TraesCS4D01G186500 chr2B 91.292 712 36 12 1 699 250717124 250717822 0.000000e+00 948.0
22 TraesCS4D01G186500 chr2D 93.958 480 23 5 226 699 102660750 102661229 0.000000e+00 721.0
23 TraesCS4D01G186500 chr2D 90.798 163 12 3 2449 2609 117226541 117226380 5.830000e-52 215.0
24 TraesCS4D01G186500 chr2D 89.571 163 13 4 2444 2603 63552256 63552417 1.260000e-48 204.0
25 TraesCS4D01G186500 chr7A 90.303 165 12 4 2448 2609 692282105 692282268 2.100000e-51 213.0
26 TraesCS4D01G186500 chr7A 89.634 164 12 5 2445 2603 167874996 167875159 1.260000e-48 204.0
27 TraesCS4D01G186500 chr7A 100.000 29 0 0 2370 2398 670904159 670904131 1.000000e-03 54.7
28 TraesCS4D01G186500 chr6A 90.062 161 11 5 2447 2603 105027667 105027826 1.260000e-48 204.0
29 TraesCS4D01G186500 chr6D 89.809 157 13 3 2450 2603 427154864 427154708 5.870000e-47 198.0
30 TraesCS4D01G186500 chr6D 100.000 30 0 0 2369 2398 65478648 65478677 3.740000e-04 56.5
31 TraesCS4D01G186500 chr5B 83.516 91 12 2 2097 2184 232576591 232576501 6.170000e-12 82.4
32 TraesCS4D01G186500 chr5A 100.000 29 0 0 2370 2398 480104640 480104668 1.000000e-03 54.7
33 TraesCS4D01G186500 chr3A 100.000 28 0 0 2371 2398 63478756 63478783 5.000000e-03 52.8
34 TraesCS4D01G186500 chr3A 100.000 28 0 0 2371 2398 560139209 560139236 5.000000e-03 52.8
35 TraesCS4D01G186500 chr2A 100.000 28 0 0 2371 2398 39577699 39577672 5.000000e-03 52.8
36 TraesCS4D01G186500 chr2A 100.000 28 0 0 2371 2398 714640705 714640678 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G186500 chr4D 324008495 324011184 2689 False 1717.066667 4968 95.698667 1 2690 3 chr4D.!!$F1 2689
1 TraesCS4D01G186500 chr4B 404556995 404558138 1143 False 757.500000 1171 92.084500 717 1769 2 chr4B.!!$F1 1052
2 TraesCS4D01G186500 chr4A 699974489 699975188 699 False 942.000000 942 91.152000 1 699 1 chr4A.!!$F1 698
3 TraesCS4D01G186500 chr4A 147444611 147446297 1686 True 926.000000 1129 87.664500 717 2317 2 chr4A.!!$R2 1600
4 TraesCS4D01G186500 chr3D 335217497 335218205 708 False 1101.000000 1101 94.930000 1 699 1 chr3D.!!$F1 698
5 TraesCS4D01G186500 chr5D 69679865 69680571 706 False 1083.000000 1083 94.499000 1 699 1 chr5D.!!$F1 698
6 TraesCS4D01G186500 chr7D 573802311 573803013 702 False 1068.000000 1068 94.318000 1 693 1 chr7D.!!$F1 692
7 TraesCS4D01G186500 chr1A 163099624 163100332 708 False 1062.000000 1062 93.935000 1 699 1 chr1A.!!$F1 698
8 TraesCS4D01G186500 chr7B 646032946 646033648 702 True 1035.000000 1035 93.352000 1 699 1 chr7B.!!$R1 698
9 TraesCS4D01G186500 chr6B 124627851 124628551 700 True 1016.000000 1016 92.928000 1 699 1 chr6B.!!$R1 698
10 TraesCS4D01G186500 chr1B 685911467 685912174 707 False 1016.000000 1016 92.938000 7 699 1 chr1B.!!$F1 692
11 TraesCS4D01G186500 chr2B 250717124 250717822 698 False 948.000000 948 91.292000 1 699 1 chr2B.!!$F1 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 729 0.096454 GCGAAATGGCGTAACTGGTC 59.904 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2494 2661 0.033228 GATCAGGGCACGGATCTGAG 59.967 60.0 20.31 0.64 42.66 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 3.685272 GCTAGCACCTGGTTTAGAAGTTC 59.315 47.826 10.63 0.00 0.00 3.01
106 108 6.265196 TGGTTTAGAAGTTCTGCAATTCACAT 59.735 34.615 15.90 0.00 0.00 3.21
290 303 1.002366 CAGTAGCTGTGCCATTCGAC 58.998 55.000 0.00 0.00 0.00 4.20
321 334 2.206576 AGAGTTGATCACAAAGGGGC 57.793 50.000 0.00 0.00 37.77 5.80
432 446 9.817809 ATGTTCACGAGTTCATGTATTAAGTAT 57.182 29.630 0.00 0.00 0.00 2.12
678 698 5.106830 ACGAACATGATTTTAAACGGGTCTC 60.107 40.000 0.00 0.00 0.00 3.36
707 727 1.427819 GGCGAAATGGCGTAACTGG 59.572 57.895 0.00 0.00 0.00 4.00
708 728 1.303091 GGCGAAATGGCGTAACTGGT 61.303 55.000 0.00 0.00 0.00 4.00
709 729 0.096454 GCGAAATGGCGTAACTGGTC 59.904 55.000 0.00 0.00 0.00 4.02
710 730 0.368907 CGAAATGGCGTAACTGGTCG 59.631 55.000 0.00 0.00 0.00 4.79
711 731 1.435577 GAAATGGCGTAACTGGTCGT 58.564 50.000 0.00 0.00 0.00 4.34
712 732 1.392510 GAAATGGCGTAACTGGTCGTC 59.607 52.381 0.00 0.00 0.00 4.20
713 733 0.606604 AATGGCGTAACTGGTCGTCT 59.393 50.000 0.00 0.00 32.71 4.18
714 734 1.466856 ATGGCGTAACTGGTCGTCTA 58.533 50.000 0.00 0.00 32.71 2.59
715 735 0.806868 TGGCGTAACTGGTCGTCTAG 59.193 55.000 0.00 0.00 32.71 2.43
716 736 0.807496 GGCGTAACTGGTCGTCTAGT 59.193 55.000 0.00 0.00 36.97 2.57
717 737 1.200948 GGCGTAACTGGTCGTCTAGTT 59.799 52.381 14.87 14.87 45.05 2.24
718 738 2.420022 GGCGTAACTGGTCGTCTAGTTA 59.580 50.000 13.04 13.04 42.16 2.24
726 746 6.655078 ACTGGTCGTCTAGTTACCTTTAAA 57.345 37.500 10.72 0.00 31.36 1.52
786 809 5.492524 TCCCTGATCCTTATCCAGAAAAAGT 59.507 40.000 0.00 0.00 0.00 2.66
1152 1209 4.554363 CTGCTCTACGTCCGGCCG 62.554 72.222 21.04 21.04 0.00 6.13
1207 1266 4.619931 GGTACGTACGTTTTGTCTTCAG 57.380 45.455 27.92 0.00 0.00 3.02
1283 1342 1.139058 CCCGCTAGGCTATCTGTTTGT 59.861 52.381 0.00 0.00 35.76 2.83
1388 1447 1.069090 ACAGCAAAGAGAACGGCGA 59.931 52.632 16.62 0.00 0.00 5.54
1422 1481 1.745489 GGATGTGAAGGTGGCGGTC 60.745 63.158 0.00 0.00 0.00 4.79
1521 1584 9.131791 GGCTATGGATTTTTCAAGAGGTAATTA 57.868 33.333 0.00 0.00 0.00 1.40
1522 1585 9.952188 GCTATGGATTTTTCAAGAGGTAATTAC 57.048 33.333 7.09 7.09 0.00 1.89
1638 1780 2.179517 CTCGGGAGTGTCAGCGAC 59.820 66.667 0.00 2.32 0.00 5.19
1682 1824 1.337823 CCCCGTTCTCATCGTCAAGTT 60.338 52.381 0.00 0.00 0.00 2.66
1696 1838 3.365969 CGTCAAGTTGAAATAACAGGGCC 60.366 47.826 7.25 0.00 0.00 5.80
1719 1861 4.640771 ACTGTTCTTGGGAGATTAGCAA 57.359 40.909 0.00 0.00 0.00 3.91
1799 1965 6.958767 ACTACTGTATTTGTTATGCCTCCTT 58.041 36.000 0.00 0.00 0.00 3.36
1825 1991 4.712122 TTTTCTTCACTTTTGGTCGCTT 57.288 36.364 0.00 0.00 0.00 4.68
1826 1992 3.963383 TTCTTCACTTTTGGTCGCTTC 57.037 42.857 0.00 0.00 0.00 3.86
1827 1993 1.864711 TCTTCACTTTTGGTCGCTTCG 59.135 47.619 0.00 0.00 0.00 3.79
1828 1994 0.306533 TTCACTTTTGGTCGCTTCGC 59.693 50.000 0.00 0.00 0.00 4.70
1861 2027 0.179234 GAGGAGCTAAGGGGAAGTGC 59.821 60.000 0.00 0.00 0.00 4.40
1872 2038 0.037975 GGGAAGTGCCAAGCAATGTG 60.038 55.000 0.00 0.00 41.47 3.21
1882 2048 3.427233 GCCAAGCAATGTGTCTCAAGATC 60.427 47.826 0.00 0.00 0.00 2.75
1937 2103 5.611844 GCTCGGTTATCGGTTGAATTTATCG 60.612 44.000 0.00 0.00 39.77 2.92
1942 2108 7.738609 CGGTTATCGGTTGAATTTATCGTATTG 59.261 37.037 0.00 0.00 34.75 1.90
1978 2144 3.618594 GCAGCTTGTCATACTTTCATCGA 59.381 43.478 0.00 0.00 0.00 3.59
1981 2147 5.521372 CAGCTTGTCATACTTTCATCGATCA 59.479 40.000 0.00 0.00 0.00 2.92
2014 2180 5.122869 TGAATGCACTTCTATTCTGAACTGC 59.877 40.000 0.00 0.00 36.77 4.40
2043 2209 3.448686 ACACACGAACAAGAAGACAGAG 58.551 45.455 0.00 0.00 0.00 3.35
2052 2218 0.600557 AGAAGACAGAGTGTGCCGAG 59.399 55.000 0.00 0.00 0.00 4.63
2063 2230 1.940613 GTGTGCCGAGAAAAACAGTCT 59.059 47.619 0.00 0.00 0.00 3.24
2076 2243 6.483640 AGAAAAACAGTCTATTCACCAGTCAC 59.516 38.462 0.00 0.00 0.00 3.67
2109 2276 8.398665 CAATATTCTTCTCTTTTAAACGGAGGG 58.601 37.037 13.91 9.42 0.00 4.30
2120 2287 1.957695 ACGGAGGGAAACGTTTCGC 60.958 57.895 37.02 37.02 46.71 4.70
2181 2348 8.931775 GTTAATTATGAAAATCGGGCAAAAACT 58.068 29.630 0.00 0.00 0.00 2.66
2182 2349 6.966435 ATTATGAAAATCGGGCAAAAACTG 57.034 33.333 0.00 0.00 0.00 3.16
2183 2350 4.599047 ATGAAAATCGGGCAAAAACTGA 57.401 36.364 0.00 0.00 0.00 3.41
2205 2372 4.859304 AGTAGACATACCACAACGAACA 57.141 40.909 0.00 0.00 31.78 3.18
2206 2373 5.401531 AGTAGACATACCACAACGAACAT 57.598 39.130 0.00 0.00 31.78 2.71
2207 2374 5.168569 AGTAGACATACCACAACGAACATG 58.831 41.667 0.00 0.00 31.78 3.21
2208 2375 2.742053 AGACATACCACAACGAACATGC 59.258 45.455 0.00 0.00 0.00 4.06
2209 2376 1.463056 ACATACCACAACGAACATGCG 59.537 47.619 0.00 0.00 37.29 4.73
2210 2377 1.729517 CATACCACAACGAACATGCGA 59.270 47.619 0.00 0.00 34.83 5.10
2211 2378 1.141645 TACCACAACGAACATGCGAC 58.858 50.000 0.00 0.00 34.83 5.19
2212 2379 1.206578 CCACAACGAACATGCGACC 59.793 57.895 0.00 0.00 34.83 4.79
2213 2380 1.206578 CACAACGAACATGCGACCC 59.793 57.895 0.00 0.00 34.83 4.46
2214 2381 1.227704 ACAACGAACATGCGACCCA 60.228 52.632 0.00 0.00 34.83 4.51
2215 2382 1.206578 CAACGAACATGCGACCCAC 59.793 57.895 0.00 0.00 34.83 4.61
2216 2383 1.964373 AACGAACATGCGACCCACC 60.964 57.895 0.00 0.00 34.83 4.61
2217 2384 2.358125 CGAACATGCGACCCACCA 60.358 61.111 0.00 0.00 0.00 4.17
2218 2385 1.963855 CGAACATGCGACCCACCAA 60.964 57.895 0.00 0.00 0.00 3.67
2219 2386 1.511318 CGAACATGCGACCCACCAAA 61.511 55.000 0.00 0.00 0.00 3.28
2220 2387 0.039527 GAACATGCGACCCACCAAAC 60.040 55.000 0.00 0.00 0.00 2.93
2221 2388 1.791103 AACATGCGACCCACCAAACG 61.791 55.000 0.00 0.00 0.00 3.60
2235 2402 2.481185 ACCAAACGCATTACTTACACGG 59.519 45.455 0.00 0.00 0.00 4.94
2239 2406 1.663643 ACGCATTACTTACACGGCATG 59.336 47.619 0.00 0.00 0.00 4.06
2289 2456 5.065859 CACCAAACACTCTCAACACACATAA 59.934 40.000 0.00 0.00 0.00 1.90
2290 2457 5.065988 ACCAAACACTCTCAACACACATAAC 59.934 40.000 0.00 0.00 0.00 1.89
2291 2458 5.296780 CCAAACACTCTCAACACACATAACT 59.703 40.000 0.00 0.00 0.00 2.24
2292 2459 6.422223 CAAACACTCTCAACACACATAACTC 58.578 40.000 0.00 0.00 0.00 3.01
2293 2460 4.632153 ACACTCTCAACACACATAACTCC 58.368 43.478 0.00 0.00 0.00 3.85
2294 2461 4.345257 ACACTCTCAACACACATAACTCCT 59.655 41.667 0.00 0.00 0.00 3.69
2295 2462 5.538813 ACACTCTCAACACACATAACTCCTA 59.461 40.000 0.00 0.00 0.00 2.94
2296 2463 6.041637 ACACTCTCAACACACATAACTCCTAA 59.958 38.462 0.00 0.00 0.00 2.69
2297 2464 6.929049 CACTCTCAACACACATAACTCCTAAA 59.071 38.462 0.00 0.00 0.00 1.85
2298 2465 6.929606 ACTCTCAACACACATAACTCCTAAAC 59.070 38.462 0.00 0.00 0.00 2.01
2299 2466 5.924254 TCTCAACACACATAACTCCTAAACG 59.076 40.000 0.00 0.00 0.00 3.60
2300 2467 5.603596 TCAACACACATAACTCCTAAACGT 58.396 37.500 0.00 0.00 0.00 3.99
2301 2468 5.464057 TCAACACACATAACTCCTAAACGTG 59.536 40.000 0.00 0.00 0.00 4.49
2302 2469 5.204409 ACACACATAACTCCTAAACGTGA 57.796 39.130 0.00 0.00 0.00 4.35
2303 2470 4.986659 ACACACATAACTCCTAAACGTGAC 59.013 41.667 0.00 0.00 0.00 3.67
2304 2471 4.986034 CACACATAACTCCTAAACGTGACA 59.014 41.667 0.00 0.00 0.00 3.58
2305 2472 5.118664 CACACATAACTCCTAAACGTGACAG 59.881 44.000 0.00 0.00 0.00 3.51
2306 2473 5.221382 ACACATAACTCCTAAACGTGACAGT 60.221 40.000 0.00 0.00 0.00 3.55
2307 2474 5.118664 CACATAACTCCTAAACGTGACAGTG 59.881 44.000 0.00 0.00 0.00 3.66
2308 2475 2.814280 ACTCCTAAACGTGACAGTGG 57.186 50.000 0.00 0.00 0.00 4.00
2309 2476 2.313317 ACTCCTAAACGTGACAGTGGA 58.687 47.619 0.00 0.00 0.00 4.02
2310 2477 2.296471 ACTCCTAAACGTGACAGTGGAG 59.704 50.000 14.47 14.47 43.56 3.86
2311 2478 2.296471 CTCCTAAACGTGACAGTGGAGT 59.704 50.000 0.00 0.00 36.00 3.85
2312 2479 2.035449 TCCTAAACGTGACAGTGGAGTG 59.965 50.000 0.00 0.00 0.00 3.51
2313 2480 2.223971 CCTAAACGTGACAGTGGAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
2314 2481 1.651987 AAACGTGACAGTGGAGTGTG 58.348 50.000 0.00 0.00 0.00 3.82
2315 2482 0.810031 AACGTGACAGTGGAGTGTGC 60.810 55.000 0.00 0.00 0.00 4.57
2316 2483 1.227234 CGTGACAGTGGAGTGTGCA 60.227 57.895 0.00 0.00 0.00 4.57
2317 2484 1.490693 CGTGACAGTGGAGTGTGCAC 61.491 60.000 10.75 10.75 39.13 4.57
2318 2485 0.461870 GTGACAGTGGAGTGTGCACA 60.462 55.000 17.42 17.42 41.46 4.57
2319 2486 0.179076 TGACAGTGGAGTGTGCACAG 60.179 55.000 22.40 9.25 41.46 3.66
2320 2487 0.882042 GACAGTGGAGTGTGCACAGG 60.882 60.000 22.40 6.50 41.46 4.00
2321 2488 1.146930 CAGTGGAGTGTGCACAGGT 59.853 57.895 22.40 11.00 41.46 4.00
2322 2489 1.146930 AGTGGAGTGTGCACAGGTG 59.853 57.895 22.40 0.00 41.46 4.00
2323 2490 1.893808 GTGGAGTGTGCACAGGTGG 60.894 63.158 22.40 0.00 38.66 4.61
2324 2491 2.980233 GGAGTGTGCACAGGTGGC 60.980 66.667 22.40 8.17 0.00 5.01
2325 2492 2.980233 GAGTGTGCACAGGTGGCC 60.980 66.667 22.40 7.33 0.00 5.36
2326 2493 4.586235 AGTGTGCACAGGTGGCCC 62.586 66.667 22.40 6.51 0.00 5.80
2327 2494 4.892965 GTGTGCACAGGTGGCCCA 62.893 66.667 22.40 0.00 0.00 5.36
2328 2495 4.892965 TGTGCACAGGTGGCCCAC 62.893 66.667 17.42 4.93 0.00 4.61
2343 2510 1.479757 GCCCACCAAACACTCCCTAAA 60.480 52.381 0.00 0.00 0.00 1.85
2346 2513 2.567985 CACCAAACACTCCCTAAACGT 58.432 47.619 0.00 0.00 0.00 3.99
2357 2524 1.343465 CCCTAAACGTGACAGTGGAGT 59.657 52.381 0.00 0.00 0.00 3.85
2363 2530 0.809636 CGTGACAGTGGAGTGTGCAA 60.810 55.000 0.00 0.00 0.00 4.08
2364 2531 0.940126 GTGACAGTGGAGTGTGCAAG 59.060 55.000 0.00 0.00 0.00 4.01
2365 2532 0.829990 TGACAGTGGAGTGTGCAAGA 59.170 50.000 0.00 0.00 0.00 3.02
2366 2533 1.209261 TGACAGTGGAGTGTGCAAGAA 59.791 47.619 0.00 0.00 0.00 2.52
2367 2534 1.599542 GACAGTGGAGTGTGCAAGAAC 59.400 52.381 0.00 0.00 0.00 3.01
2368 2535 1.065491 ACAGTGGAGTGTGCAAGAACA 60.065 47.619 0.00 0.00 0.00 3.18
2376 2543 3.609103 GTGTGCAAGAACACTGTTAGG 57.391 47.619 4.04 0.00 45.69 2.69
2377 2544 3.202906 GTGTGCAAGAACACTGTTAGGA 58.797 45.455 4.04 0.00 45.69 2.94
2378 2545 3.815401 GTGTGCAAGAACACTGTTAGGAT 59.185 43.478 4.04 0.00 45.69 3.24
2379 2546 3.814842 TGTGCAAGAACACTGTTAGGATG 59.185 43.478 0.00 0.00 41.30 3.51
2380 2547 4.065088 GTGCAAGAACACTGTTAGGATGA 58.935 43.478 0.00 0.00 37.58 2.92
2381 2548 4.697352 GTGCAAGAACACTGTTAGGATGAT 59.303 41.667 0.00 0.00 37.58 2.45
2382 2549 4.937620 TGCAAGAACACTGTTAGGATGATC 59.062 41.667 0.00 0.00 0.00 2.92
2383 2550 5.181748 GCAAGAACACTGTTAGGATGATCT 58.818 41.667 0.00 0.00 0.00 2.75
2384 2551 5.645497 GCAAGAACACTGTTAGGATGATCTT 59.355 40.000 0.00 0.00 36.30 2.40
2385 2552 6.183360 GCAAGAACACTGTTAGGATGATCTTC 60.183 42.308 0.00 0.00 34.39 2.87
2386 2553 6.611613 AGAACACTGTTAGGATGATCTTCA 57.388 37.500 10.48 0.00 0.00 3.02
2387 2554 6.402222 AGAACACTGTTAGGATGATCTTCAC 58.598 40.000 10.48 1.64 0.00 3.18
2388 2555 5.091261 ACACTGTTAGGATGATCTTCACC 57.909 43.478 10.48 1.27 0.00 4.02
2389 2556 4.115516 CACTGTTAGGATGATCTTCACCG 58.884 47.826 10.48 0.60 0.00 4.94
2390 2557 3.769844 ACTGTTAGGATGATCTTCACCGT 59.230 43.478 10.48 1.13 0.00 4.83
2391 2558 4.115516 CTGTTAGGATGATCTTCACCGTG 58.884 47.826 10.48 0.00 0.00 4.94
2392 2559 3.513912 TGTTAGGATGATCTTCACCGTGT 59.486 43.478 10.48 0.00 0.00 4.49
2393 2560 2.680312 AGGATGATCTTCACCGTGTG 57.320 50.000 10.48 0.00 34.45 3.82
2394 2561 1.208052 AGGATGATCTTCACCGTGTGG 59.792 52.381 10.48 0.00 42.84 4.17
2395 2562 1.656652 GATGATCTTCACCGTGTGGG 58.343 55.000 3.80 0.00 40.75 4.61
2396 2563 0.392998 ATGATCTTCACCGTGTGGGC 60.393 55.000 0.00 0.00 40.62 5.36
2397 2564 1.745489 GATCTTCACCGTGTGGGCC 60.745 63.158 0.00 0.00 40.62 5.80
2398 2565 3.605749 ATCTTCACCGTGTGGGCCG 62.606 63.158 0.00 0.00 40.62 6.13
2399 2566 4.619227 CTTCACCGTGTGGGCCGT 62.619 66.667 0.00 0.00 40.62 5.68
2400 2567 4.920112 TTCACCGTGTGGGCCGTG 62.920 66.667 0.00 0.00 40.62 4.94
2406 2573 3.660111 GTGTGGGCCGTGCTCAAC 61.660 66.667 0.00 0.00 42.30 3.18
2407 2574 4.182433 TGTGGGCCGTGCTCAACA 62.182 61.111 0.00 0.00 42.30 3.33
2408 2575 3.357079 GTGGGCCGTGCTCAACAG 61.357 66.667 0.00 0.00 42.30 3.16
2409 2576 3.555324 TGGGCCGTGCTCAACAGA 61.555 61.111 0.00 0.00 35.42 3.41
2410 2577 3.050275 GGGCCGTGCTCAACAGAC 61.050 66.667 0.00 0.00 0.00 3.51
2411 2578 2.280797 GGCCGTGCTCAACAGACA 60.281 61.111 0.00 0.00 0.00 3.41
2412 2579 1.672356 GGCCGTGCTCAACAGACAT 60.672 57.895 0.00 0.00 0.00 3.06
2413 2580 0.391130 GGCCGTGCTCAACAGACATA 60.391 55.000 0.00 0.00 0.00 2.29
2414 2581 1.438651 GCCGTGCTCAACAGACATAA 58.561 50.000 0.00 0.00 0.00 1.90
2415 2582 1.128692 GCCGTGCTCAACAGACATAAC 59.871 52.381 0.00 0.00 0.00 1.89
2416 2583 1.732259 CCGTGCTCAACAGACATAACC 59.268 52.381 0.00 0.00 0.00 2.85
2417 2584 1.732259 CGTGCTCAACAGACATAACCC 59.268 52.381 0.00 0.00 0.00 4.11
2418 2585 2.612972 CGTGCTCAACAGACATAACCCT 60.613 50.000 0.00 0.00 0.00 4.34
2419 2586 3.412386 GTGCTCAACAGACATAACCCTT 58.588 45.455 0.00 0.00 0.00 3.95
2420 2587 4.575885 GTGCTCAACAGACATAACCCTTA 58.424 43.478 0.00 0.00 0.00 2.69
2421 2588 5.001232 GTGCTCAACAGACATAACCCTTAA 58.999 41.667 0.00 0.00 0.00 1.85
2422 2589 5.472137 GTGCTCAACAGACATAACCCTTAAA 59.528 40.000 0.00 0.00 0.00 1.52
2423 2590 5.472137 TGCTCAACAGACATAACCCTTAAAC 59.528 40.000 0.00 0.00 0.00 2.01
2424 2591 5.390567 GCTCAACAGACATAACCCTTAAACG 60.391 44.000 0.00 0.00 0.00 3.60
2425 2592 5.613329 TCAACAGACATAACCCTTAAACGT 58.387 37.500 0.00 0.00 0.00 3.99
2426 2593 5.467399 TCAACAGACATAACCCTTAAACGTG 59.533 40.000 0.00 0.00 0.00 4.49
2427 2594 5.217978 ACAGACATAACCCTTAAACGTGA 57.782 39.130 0.00 0.00 0.00 4.35
2428 2595 4.992951 ACAGACATAACCCTTAAACGTGAC 59.007 41.667 0.00 0.00 0.00 3.67
2429 2596 4.992319 CAGACATAACCCTTAAACGTGACA 59.008 41.667 0.00 0.00 0.00 3.58
2430 2597 5.120208 CAGACATAACCCTTAAACGTGACAG 59.880 44.000 0.00 0.00 0.00 3.51
2431 2598 4.964593 ACATAACCCTTAAACGTGACAGT 58.035 39.130 0.00 0.00 0.00 3.55
2432 2599 4.753107 ACATAACCCTTAAACGTGACAGTG 59.247 41.667 0.00 0.00 0.00 3.66
2433 2600 2.249844 ACCCTTAAACGTGACAGTGG 57.750 50.000 0.00 0.00 0.00 4.00
2434 2601 1.764134 ACCCTTAAACGTGACAGTGGA 59.236 47.619 0.00 0.00 0.00 4.02
2435 2602 2.224209 ACCCTTAAACGTGACAGTGGAG 60.224 50.000 0.00 0.00 0.00 3.86
2436 2603 2.224209 CCCTTAAACGTGACAGTGGAGT 60.224 50.000 0.00 0.00 0.00 3.85
2437 2604 2.800544 CCTTAAACGTGACAGTGGAGTG 59.199 50.000 0.00 0.00 0.00 3.51
2438 2605 3.454375 CTTAAACGTGACAGTGGAGTGT 58.546 45.455 0.00 0.00 0.00 3.55
2439 2606 1.651987 AAACGTGACAGTGGAGTGTG 58.348 50.000 0.00 0.00 0.00 3.82
2440 2607 0.810031 AACGTGACAGTGGAGTGTGC 60.810 55.000 0.00 0.00 0.00 4.57
2441 2608 1.227234 CGTGACAGTGGAGTGTGCA 60.227 57.895 0.00 0.00 0.00 4.57
2442 2609 0.809636 CGTGACAGTGGAGTGTGCAA 60.810 55.000 0.00 0.00 0.00 4.08
2443 2610 0.940126 GTGACAGTGGAGTGTGCAAG 59.060 55.000 0.00 0.00 0.00 4.01
2444 2611 0.829990 TGACAGTGGAGTGTGCAAGA 59.170 50.000 0.00 0.00 0.00 3.02
2445 2612 1.209261 TGACAGTGGAGTGTGCAAGAA 59.791 47.619 0.00 0.00 0.00 2.52
2446 2613 1.599542 GACAGTGGAGTGTGCAAGAAC 59.400 52.381 0.00 0.00 0.00 3.01
2447 2614 1.065491 ACAGTGGAGTGTGCAAGAACA 60.065 47.619 0.00 0.00 0.00 3.18
2455 2622 3.609103 GTGTGCAAGAACACTGTTAGG 57.391 47.619 4.04 0.00 45.69 2.69
2456 2623 3.202906 GTGTGCAAGAACACTGTTAGGA 58.797 45.455 4.04 0.00 45.69 2.94
2457 2624 3.815401 GTGTGCAAGAACACTGTTAGGAT 59.185 43.478 4.04 0.00 45.69 3.24
2458 2625 3.814842 TGTGCAAGAACACTGTTAGGATG 59.185 43.478 0.00 0.00 41.30 3.51
2459 2626 4.065088 GTGCAAGAACACTGTTAGGATGA 58.935 43.478 0.00 0.00 37.58 2.92
2460 2627 4.697352 GTGCAAGAACACTGTTAGGATGAT 59.303 41.667 0.00 0.00 37.58 2.45
2461 2628 4.937620 TGCAAGAACACTGTTAGGATGATC 59.062 41.667 0.00 0.00 0.00 2.92
2462 2629 5.181748 GCAAGAACACTGTTAGGATGATCT 58.818 41.667 0.00 0.00 0.00 2.75
2463 2630 6.070824 TGCAAGAACACTGTTAGGATGATCTA 60.071 38.462 0.00 0.00 0.00 1.98
2464 2631 6.256757 GCAAGAACACTGTTAGGATGATCTAC 59.743 42.308 0.00 0.00 0.00 2.59
2465 2632 6.472686 AGAACACTGTTAGGATGATCTACC 57.527 41.667 0.00 0.00 0.00 3.18
2466 2633 5.364157 AGAACACTGTTAGGATGATCTACCC 59.636 44.000 0.00 0.00 0.00 3.69
2467 2634 3.967987 ACACTGTTAGGATGATCTACCCC 59.032 47.826 0.00 0.00 0.00 4.95
2468 2635 3.005897 CACTGTTAGGATGATCTACCCCG 59.994 52.174 0.00 0.00 0.00 5.73
2469 2636 3.231818 CTGTTAGGATGATCTACCCCGT 58.768 50.000 0.00 0.00 0.00 5.28
2470 2637 4.141088 ACTGTTAGGATGATCTACCCCGTA 60.141 45.833 0.00 0.00 0.00 4.02
2471 2638 5.006896 TGTTAGGATGATCTACCCCGTAT 57.993 43.478 0.00 0.00 0.00 3.06
2472 2639 4.770531 TGTTAGGATGATCTACCCCGTATG 59.229 45.833 0.00 0.00 0.00 2.39
2473 2640 2.821437 AGGATGATCTACCCCGTATGG 58.179 52.381 0.00 0.00 0.00 2.74
2500 2667 2.365635 CCCACCGGACCCTCAGAT 60.366 66.667 9.46 0.00 0.00 2.90
2501 2668 2.435693 CCCACCGGACCCTCAGATC 61.436 68.421 9.46 0.00 0.00 2.75
2502 2669 2.435693 CCACCGGACCCTCAGATCC 61.436 68.421 9.46 0.00 0.00 3.36
2506 2673 2.501610 GGACCCTCAGATCCGTGC 59.498 66.667 0.00 0.00 0.00 5.34
2507 2674 2.501610 GACCCTCAGATCCGTGCC 59.498 66.667 0.00 0.00 0.00 5.01
2508 2675 3.083997 ACCCTCAGATCCGTGCCC 61.084 66.667 0.00 0.00 0.00 5.36
2509 2676 2.765807 CCCTCAGATCCGTGCCCT 60.766 66.667 0.00 0.00 0.00 5.19
2510 2677 2.503061 CCTCAGATCCGTGCCCTG 59.497 66.667 0.00 0.00 0.00 4.45
2511 2678 2.060383 CCTCAGATCCGTGCCCTGA 61.060 63.158 0.00 0.00 35.81 3.86
2512 2679 1.406065 CCTCAGATCCGTGCCCTGAT 61.406 60.000 0.00 0.00 36.48 2.90
2513 2680 0.033228 CTCAGATCCGTGCCCTGATC 59.967 60.000 0.00 0.00 36.48 2.92
2514 2681 0.687427 TCAGATCCGTGCCCTGATCA 60.687 55.000 3.66 0.00 39.86 2.92
2515 2682 0.249784 CAGATCCGTGCCCTGATCAG 60.250 60.000 16.24 16.24 39.86 2.90
2524 2691 3.621225 CCTGATCAGGGACGCTCA 58.379 61.111 31.14 0.00 44.87 4.26
2525 2692 1.900351 CCTGATCAGGGACGCTCAA 59.100 57.895 31.14 0.00 44.87 3.02
2526 2693 0.460987 CCTGATCAGGGACGCTCAAC 60.461 60.000 31.14 0.00 44.87 3.18
2527 2694 0.534412 CTGATCAGGGACGCTCAACT 59.466 55.000 15.38 0.00 0.00 3.16
2528 2695 0.532573 TGATCAGGGACGCTCAACTC 59.467 55.000 0.00 0.00 0.00 3.01
2529 2696 0.532573 GATCAGGGACGCTCAACTCA 59.467 55.000 0.00 0.00 0.00 3.41
2530 2697 0.247736 ATCAGGGACGCTCAACTCAC 59.752 55.000 0.00 0.00 0.00 3.51
2531 2698 0.827925 TCAGGGACGCTCAACTCACT 60.828 55.000 0.00 0.00 0.00 3.41
2532 2699 0.888619 CAGGGACGCTCAACTCACTA 59.111 55.000 0.00 0.00 0.00 2.74
2533 2700 1.478510 CAGGGACGCTCAACTCACTAT 59.521 52.381 0.00 0.00 0.00 2.12
2534 2701 1.478510 AGGGACGCTCAACTCACTATG 59.521 52.381 0.00 0.00 0.00 2.23
2535 2702 1.204941 GGGACGCTCAACTCACTATGT 59.795 52.381 0.00 0.00 0.00 2.29
2536 2703 2.353803 GGGACGCTCAACTCACTATGTT 60.354 50.000 0.00 0.00 0.00 2.71
2537 2704 2.668457 GGACGCTCAACTCACTATGTTG 59.332 50.000 0.00 0.00 44.21 3.33
2539 2706 3.318017 ACGCTCAACTCACTATGTTGAC 58.682 45.455 5.36 3.32 45.77 3.18
2540 2707 2.342651 CGCTCAACTCACTATGTTGACG 59.657 50.000 5.36 9.85 45.77 4.35
2541 2708 2.668457 GCTCAACTCACTATGTTGACGG 59.332 50.000 5.36 0.00 45.77 4.79
2542 2709 3.254060 CTCAACTCACTATGTTGACGGG 58.746 50.000 5.36 0.00 45.77 5.28
2543 2710 1.732259 CAACTCACTATGTTGACGGGC 59.268 52.381 0.00 0.00 45.27 6.13
2544 2711 0.249398 ACTCACTATGTTGACGGGCC 59.751 55.000 0.00 0.00 0.00 5.80
2545 2712 0.462047 CTCACTATGTTGACGGGCCC 60.462 60.000 13.57 13.57 0.00 5.80
2546 2713 1.451387 CACTATGTTGACGGGCCCC 60.451 63.158 18.66 2.97 0.00 5.80
2547 2714 1.615424 ACTATGTTGACGGGCCCCT 60.615 57.895 18.66 3.90 0.00 4.79
2548 2715 1.153168 CTATGTTGACGGGCCCCTG 60.153 63.158 18.66 5.47 0.00 4.45
2549 2716 1.910580 CTATGTTGACGGGCCCCTGT 61.911 60.000 18.66 9.62 38.41 4.00
2559 2726 3.958860 GCCCCTGTCACCTGCACT 61.959 66.667 0.00 0.00 0.00 4.40
2560 2727 2.592993 GCCCCTGTCACCTGCACTA 61.593 63.158 0.00 0.00 0.00 2.74
2561 2728 1.915078 GCCCCTGTCACCTGCACTAT 61.915 60.000 0.00 0.00 0.00 2.12
2562 2729 1.496060 CCCCTGTCACCTGCACTATA 58.504 55.000 0.00 0.00 0.00 1.31
2563 2730 2.050144 CCCCTGTCACCTGCACTATAT 58.950 52.381 0.00 0.00 0.00 0.86
2564 2731 3.239449 CCCCTGTCACCTGCACTATATA 58.761 50.000 0.00 0.00 0.00 0.86
2565 2732 3.646162 CCCCTGTCACCTGCACTATATAA 59.354 47.826 0.00 0.00 0.00 0.98
2566 2733 4.102524 CCCCTGTCACCTGCACTATATAAA 59.897 45.833 0.00 0.00 0.00 1.40
2567 2734 5.397447 CCCCTGTCACCTGCACTATATAAAA 60.397 44.000 0.00 0.00 0.00 1.52
2568 2735 6.119536 CCCTGTCACCTGCACTATATAAAAA 58.880 40.000 0.00 0.00 0.00 1.94
2569 2736 6.260936 CCCTGTCACCTGCACTATATAAAAAG 59.739 42.308 0.00 0.00 0.00 2.27
2570 2737 6.260936 CCTGTCACCTGCACTATATAAAAAGG 59.739 42.308 0.00 0.00 0.00 3.11
2571 2738 6.717289 TGTCACCTGCACTATATAAAAAGGT 58.283 36.000 0.00 0.00 37.02 3.50
2573 2740 6.377327 CACCTGCACTATATAAAAAGGTGG 57.623 41.667 17.79 4.86 46.10 4.61
2574 2741 5.299279 CACCTGCACTATATAAAAAGGTGGG 59.701 44.000 17.79 8.27 46.10 4.61
2575 2742 4.827284 CCTGCACTATATAAAAAGGTGGGG 59.173 45.833 0.00 0.00 0.00 4.96
2576 2743 4.211920 TGCACTATATAAAAAGGTGGGGC 58.788 43.478 0.00 0.00 0.00 5.80
2577 2744 3.572682 GCACTATATAAAAAGGTGGGGCC 59.427 47.826 0.00 0.00 37.58 5.80
2578 2745 3.818773 CACTATATAAAAAGGTGGGGCCG 59.181 47.826 0.00 0.00 43.70 6.13
2579 2746 1.699730 ATATAAAAAGGTGGGGCCGC 58.300 50.000 14.01 14.01 43.70 6.53
2580 2747 0.748729 TATAAAAAGGTGGGGCCGCG 60.749 55.000 15.95 0.00 43.70 6.46
2581 2748 5.939898 TATATAAAAAGGTGGGGCCGCGG 62.940 52.174 24.05 24.05 43.70 6.46
2628 2795 4.400961 GCTTGCCTGCTCCCGTCT 62.401 66.667 0.00 0.00 0.00 4.18
2629 2796 2.125350 CTTGCCTGCTCCCGTCTC 60.125 66.667 0.00 0.00 0.00 3.36
2630 2797 3.672295 CTTGCCTGCTCCCGTCTCC 62.672 68.421 0.00 0.00 0.00 3.71
2631 2798 4.704103 TGCCTGCTCCCGTCTCCT 62.704 66.667 0.00 0.00 0.00 3.69
2632 2799 4.154347 GCCTGCTCCCGTCTCCTG 62.154 72.222 0.00 0.00 0.00 3.86
2633 2800 4.154347 CCTGCTCCCGTCTCCTGC 62.154 72.222 0.00 0.00 0.00 4.85
2634 2801 3.073735 CTGCTCCCGTCTCCTGCT 61.074 66.667 0.00 0.00 0.00 4.24
2635 2802 3.071206 TGCTCCCGTCTCCTGCTC 61.071 66.667 0.00 0.00 0.00 4.26
2636 2803 3.844090 GCTCCCGTCTCCTGCTCC 61.844 72.222 0.00 0.00 0.00 4.70
2637 2804 3.151022 CTCCCGTCTCCTGCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
2638 2805 3.965026 CTCCCGTCTCCTGCTCCCA 62.965 68.421 0.00 0.00 0.00 4.37
2639 2806 2.765807 CCCGTCTCCTGCTCCCAT 60.766 66.667 0.00 0.00 0.00 4.00
2640 2807 2.801631 CCCGTCTCCTGCTCCCATC 61.802 68.421 0.00 0.00 0.00 3.51
2641 2808 2.801631 CCGTCTCCTGCTCCCATCC 61.802 68.421 0.00 0.00 0.00 3.51
2642 2809 2.818132 GTCTCCTGCTCCCATCCG 59.182 66.667 0.00 0.00 0.00 4.18
2643 2810 2.060980 GTCTCCTGCTCCCATCCGT 61.061 63.158 0.00 0.00 0.00 4.69
2644 2811 2.060383 TCTCCTGCTCCCATCCGTG 61.060 63.158 0.00 0.00 0.00 4.94
2645 2812 3.746949 CTCCTGCTCCCATCCGTGC 62.747 68.421 0.00 0.00 0.00 5.34
2646 2813 3.790437 CCTGCTCCCATCCGTGCT 61.790 66.667 0.00 0.00 0.00 4.40
2647 2814 2.202987 CTGCTCCCATCCGTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
2648 2815 3.746949 CTGCTCCCATCCGTGCTCC 62.747 68.421 0.00 0.00 0.00 4.70
2649 2816 4.899239 GCTCCCATCCGTGCTCCG 62.899 72.222 0.00 0.00 0.00 4.63
2650 2817 4.899239 CTCCCATCCGTGCTCCGC 62.899 72.222 0.00 0.00 34.38 5.54
2662 2829 4.424430 CTCCGCGCCGTTCGTTTG 62.424 66.667 0.00 0.00 41.07 2.93
2669 2836 3.841222 CCGTTCGTTTGGCATTGC 58.159 55.556 0.00 0.00 0.00 3.56
2670 2837 1.007964 CCGTTCGTTTGGCATTGCA 60.008 52.632 11.39 0.00 0.00 4.08
2671 2838 1.274798 CCGTTCGTTTGGCATTGCAC 61.275 55.000 11.39 0.00 0.00 4.57
2672 2839 1.595982 CGTTCGTTTGGCATTGCACG 61.596 55.000 11.39 11.91 0.00 5.34
2673 2840 1.007964 TTCGTTTGGCATTGCACGG 60.008 52.632 16.77 2.89 33.39 4.94
2674 2841 3.105157 CGTTTGGCATTGCACGGC 61.105 61.111 11.39 2.09 0.00 5.68
2675 2842 2.339712 GTTTGGCATTGCACGGCT 59.660 55.556 11.39 0.00 0.00 5.52
2676 2843 1.734117 GTTTGGCATTGCACGGCTC 60.734 57.895 11.39 1.53 0.00 4.70
2677 2844 2.929903 TTTGGCATTGCACGGCTCC 61.930 57.895 11.39 0.00 0.00 4.70
2678 2845 4.657408 TGGCATTGCACGGCTCCA 62.657 61.111 11.39 0.00 0.00 3.86
2679 2846 3.142838 GGCATTGCACGGCTCCAT 61.143 61.111 11.39 0.00 0.00 3.41
2680 2847 2.410469 GCATTGCACGGCTCCATC 59.590 61.111 3.15 0.00 0.00 3.51
2681 2848 2.409055 GCATTGCACGGCTCCATCA 61.409 57.895 3.15 0.00 0.00 3.07
2682 2849 1.936436 GCATTGCACGGCTCCATCAA 61.936 55.000 3.15 0.00 0.00 2.57
2683 2850 0.742505 CATTGCACGGCTCCATCAAT 59.257 50.000 0.00 0.00 0.00 2.57
2684 2851 1.135527 CATTGCACGGCTCCATCAATT 59.864 47.619 0.00 0.00 0.00 2.32
2685 2852 1.255882 TTGCACGGCTCCATCAATTT 58.744 45.000 0.00 0.00 0.00 1.82
2686 2853 0.810648 TGCACGGCTCCATCAATTTC 59.189 50.000 0.00 0.00 0.00 2.17
2687 2854 0.101219 GCACGGCTCCATCAATTTCC 59.899 55.000 0.00 0.00 0.00 3.13
2688 2855 0.740737 CACGGCTCCATCAATTTCCC 59.259 55.000 0.00 0.00 0.00 3.97
2689 2856 0.625849 ACGGCTCCATCAATTTCCCT 59.374 50.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 8.920509 TCAAAATTATGAGATGTGAATTGCAG 57.079 30.769 0.00 0.00 0.00 4.41
106 108 9.465199 TCTGGACATCAAATCAAAATTATGAGA 57.535 29.630 0.00 0.00 31.76 3.27
250 263 2.698274 GCCCCTTGTGGAAAAAGAAAGA 59.302 45.455 0.00 0.00 30.71 2.52
290 303 4.387256 GTGATCAACTCTTTGTCCTTCGAG 59.613 45.833 0.00 0.00 34.02 4.04
321 334 8.093307 ACTCTTGTGTATATATCCTGAATGCTG 58.907 37.037 0.00 0.00 0.00 4.41
693 713 1.001633 AGACGACCAGTTACGCCATTT 59.998 47.619 0.00 0.00 0.00 2.32
696 716 0.806868 CTAGACGACCAGTTACGCCA 59.193 55.000 0.00 0.00 0.00 5.69
697 717 0.807496 ACTAGACGACCAGTTACGCC 59.193 55.000 0.00 0.00 0.00 5.68
715 735 5.768662 AGAGGCTGGACTTTTTAAAGGTAAC 59.231 40.000 0.00 0.00 40.31 2.50
716 736 5.948842 AGAGGCTGGACTTTTTAAAGGTAA 58.051 37.500 0.00 0.00 40.31 2.85
717 737 5.309806 AGAGAGGCTGGACTTTTTAAAGGTA 59.690 40.000 0.00 0.00 40.31 3.08
718 738 4.104897 AGAGAGGCTGGACTTTTTAAAGGT 59.895 41.667 0.00 0.00 40.31 3.50
719 739 4.657013 AGAGAGGCTGGACTTTTTAAAGG 58.343 43.478 0.00 0.00 40.31 3.11
720 740 5.555966 AGAGAGAGGCTGGACTTTTTAAAG 58.444 41.667 0.00 0.80 41.73 1.85
723 743 5.419471 GTCTAGAGAGAGGCTGGACTTTTTA 59.581 44.000 0.00 0.00 39.77 1.52
726 746 3.245443 TGTCTAGAGAGAGGCTGGACTTT 60.245 47.826 0.00 0.00 42.32 2.66
955 984 0.742635 TGTGCGTCTGTTGAAGTGCA 60.743 50.000 0.00 0.00 36.48 4.57
1152 1209 4.509737 GAGTAGGTGGGCGGCGTC 62.510 72.222 9.37 5.57 0.00 5.19
1388 1447 1.352352 CATCCACCTTCACCTTCACCT 59.648 52.381 0.00 0.00 0.00 4.00
1507 1566 9.310449 AGAGTACAGAAGTAATTACCTCTTGAA 57.690 33.333 13.08 1.17 29.39 2.69
1521 1584 9.696572 TGGAGTTACATAATAGAGTACAGAAGT 57.303 33.333 0.00 0.00 0.00 3.01
1522 1585 9.953697 GTGGAGTTACATAATAGAGTACAGAAG 57.046 37.037 0.00 0.00 0.00 2.85
1530 1672 6.926272 GCCTGAAGTGGAGTTACATAATAGAG 59.074 42.308 0.00 0.00 0.00 2.43
1535 1677 5.248477 AGAAGCCTGAAGTGGAGTTACATAA 59.752 40.000 0.00 0.00 0.00 1.90
1541 1683 1.771255 ACAGAAGCCTGAAGTGGAGTT 59.229 47.619 0.00 0.00 43.02 3.01
1682 1824 3.237268 ACAGTTGGCCCTGTTATTTCA 57.763 42.857 8.70 0.00 42.99 2.69
1696 1838 4.326826 TGCTAATCTCCCAAGAACAGTTG 58.673 43.478 0.00 0.00 34.49 3.16
1772 1914 8.545472 AGGAGGCATAACAAATACAGTAGTAAA 58.455 33.333 0.00 0.00 33.13 2.01
1773 1915 8.086143 AGGAGGCATAACAAATACAGTAGTAA 57.914 34.615 0.00 0.00 33.13 2.24
1774 1916 7.670605 AGGAGGCATAACAAATACAGTAGTA 57.329 36.000 0.00 0.00 34.10 1.82
1776 1918 7.865706 AAAGGAGGCATAACAAATACAGTAG 57.134 36.000 0.00 0.00 0.00 2.57
1777 1919 8.644374 AAAAAGGAGGCATAACAAATACAGTA 57.356 30.769 0.00 0.00 0.00 2.74
1778 1920 7.539034 AAAAAGGAGGCATAACAAATACAGT 57.461 32.000 0.00 0.00 0.00 3.55
1804 1970 4.668289 GAAGCGACCAAAAGTGAAGAAAA 58.332 39.130 0.00 0.00 0.00 2.29
1807 1973 1.864711 CGAAGCGACCAAAAGTGAAGA 59.135 47.619 0.00 0.00 0.00 2.87
1808 1974 2.300623 CGAAGCGACCAAAAGTGAAG 57.699 50.000 0.00 0.00 0.00 3.02
1823 1989 1.135489 TCTAGCAGGTTACACGCGAAG 60.135 52.381 15.93 7.57 0.00 3.79
1825 1991 0.450583 CTCTAGCAGGTTACACGCGA 59.549 55.000 15.93 0.00 0.00 5.87
1826 1992 0.525668 CCTCTAGCAGGTTACACGCG 60.526 60.000 3.53 3.53 37.53 6.01
1827 1993 0.815734 TCCTCTAGCAGGTTACACGC 59.184 55.000 7.76 0.00 43.95 5.34
1828 1994 2.853731 CTCCTCTAGCAGGTTACACG 57.146 55.000 7.76 0.00 43.95 4.49
1861 2027 3.128242 GGATCTTGAGACACATTGCTTGG 59.872 47.826 0.00 0.00 0.00 3.61
1872 2038 1.227002 GTCGCGGGGATCTTGAGAC 60.227 63.158 6.13 0.00 0.00 3.36
1882 2048 2.268298 GCATATATACAAGTCGCGGGG 58.732 52.381 6.13 0.00 0.00 5.73
1937 2103 7.264373 AGCTGCTTAATAACATGTCCAATAC 57.736 36.000 0.00 0.00 0.00 1.89
1942 2108 5.123820 TGACAAGCTGCTTAATAACATGTCC 59.876 40.000 15.51 2.76 35.10 4.02
1954 2120 4.093998 CGATGAAAGTATGACAAGCTGCTT 59.906 41.667 9.53 9.53 0.00 3.91
1978 2144 4.134379 AGTGCATTCAGTCGATTCTGAT 57.866 40.909 6.57 0.00 42.84 2.90
1981 2147 4.199432 AGAAGTGCATTCAGTCGATTCT 57.801 40.909 10.26 0.00 40.67 2.40
2043 2209 1.940613 AGACTGTTTTTCTCGGCACAC 59.059 47.619 0.00 0.00 0.00 3.82
2052 2218 6.293462 GGTGACTGGTGAATAGACTGTTTTTC 60.293 42.308 0.00 0.00 0.00 2.29
2063 2230 1.906574 GTGAGGGGTGACTGGTGAATA 59.093 52.381 0.00 0.00 0.00 1.75
2076 2243 8.807948 TTAAAAGAGAAGAATATTGTGAGGGG 57.192 34.615 0.00 0.00 0.00 4.79
2109 2276 6.846870 TTAATCAATGATGCGAAACGTTTC 57.153 33.333 27.37 27.37 0.00 2.78
2150 2317 6.809196 TGCCCGATTTTCATAATTAACAACAC 59.191 34.615 0.00 0.00 0.00 3.32
2151 2318 6.925211 TGCCCGATTTTCATAATTAACAACA 58.075 32.000 0.00 0.00 0.00 3.33
2152 2319 7.820044 TTGCCCGATTTTCATAATTAACAAC 57.180 32.000 0.00 0.00 0.00 3.32
2158 2325 7.158021 TCAGTTTTTGCCCGATTTTCATAATT 58.842 30.769 0.00 0.00 0.00 1.40
2181 2348 5.221283 TGTTCGTTGTGGTATGTCTACTTCA 60.221 40.000 0.00 0.00 0.00 3.02
2182 2349 5.224888 TGTTCGTTGTGGTATGTCTACTTC 58.775 41.667 0.00 0.00 0.00 3.01
2183 2350 5.204409 TGTTCGTTGTGGTATGTCTACTT 57.796 39.130 0.00 0.00 0.00 2.24
2205 2372 3.361977 GCGTTTGGTGGGTCGCAT 61.362 61.111 0.00 0.00 46.40 4.73
2208 2375 0.167251 GTAATGCGTTTGGTGGGTCG 59.833 55.000 0.00 0.00 0.00 4.79
2209 2376 1.530323 AGTAATGCGTTTGGTGGGTC 58.470 50.000 0.00 0.00 0.00 4.46
2210 2377 1.989706 AAGTAATGCGTTTGGTGGGT 58.010 45.000 0.00 0.00 0.00 4.51
2211 2378 2.814919 TGTAAGTAATGCGTTTGGTGGG 59.185 45.455 0.00 0.00 0.00 4.61
2212 2379 3.665848 CGTGTAAGTAATGCGTTTGGTGG 60.666 47.826 0.00 0.00 0.00 4.61
2213 2380 3.475242 CGTGTAAGTAATGCGTTTGGTG 58.525 45.455 0.00 0.00 0.00 4.17
2214 2381 2.481185 CCGTGTAAGTAATGCGTTTGGT 59.519 45.455 0.00 0.00 0.00 3.67
2215 2382 2.726681 GCCGTGTAAGTAATGCGTTTGG 60.727 50.000 0.00 0.00 0.00 3.28
2216 2383 2.096169 TGCCGTGTAAGTAATGCGTTTG 60.096 45.455 0.00 0.00 0.00 2.93
2217 2384 2.144730 TGCCGTGTAAGTAATGCGTTT 58.855 42.857 0.00 0.00 0.00 3.60
2218 2385 1.798283 TGCCGTGTAAGTAATGCGTT 58.202 45.000 0.00 0.00 0.00 4.84
2219 2386 1.663643 CATGCCGTGTAAGTAATGCGT 59.336 47.619 0.00 0.00 0.00 5.24
2220 2387 1.930503 TCATGCCGTGTAAGTAATGCG 59.069 47.619 0.00 0.00 0.00 4.73
2221 2388 4.095610 GTTTCATGCCGTGTAAGTAATGC 58.904 43.478 0.00 0.00 0.00 3.56
2222 2389 4.438200 GGGTTTCATGCCGTGTAAGTAATG 60.438 45.833 0.00 0.00 0.00 1.90
2223 2390 3.692593 GGGTTTCATGCCGTGTAAGTAAT 59.307 43.478 0.00 0.00 0.00 1.89
2224 2391 3.075884 GGGTTTCATGCCGTGTAAGTAA 58.924 45.455 0.00 0.00 0.00 2.24
2235 2402 2.686816 CGGACGTGGGGTTTCATGC 61.687 63.158 0.00 0.00 0.00 4.06
2239 2406 3.351416 GTGCGGACGTGGGGTTTC 61.351 66.667 0.00 0.00 0.00 2.78
2260 2427 1.966451 GAGAGTGTTTGGTGGGCCG 60.966 63.158 0.00 0.00 37.67 6.13
2261 2428 0.467290 TTGAGAGTGTTTGGTGGGCC 60.467 55.000 0.00 0.00 0.00 5.80
2268 2435 6.363577 AGTTATGTGTGTTGAGAGTGTTTG 57.636 37.500 0.00 0.00 0.00 2.93
2270 2437 5.057149 GGAGTTATGTGTGTTGAGAGTGTT 58.943 41.667 0.00 0.00 0.00 3.32
2273 2440 6.665992 TTAGGAGTTATGTGTGTTGAGAGT 57.334 37.500 0.00 0.00 0.00 3.24
2289 2456 2.296471 CTCCACTGTCACGTTTAGGAGT 59.704 50.000 0.00 0.00 37.11 3.85
2290 2457 2.296471 ACTCCACTGTCACGTTTAGGAG 59.704 50.000 12.17 12.17 45.07 3.69
2291 2458 2.035449 CACTCCACTGTCACGTTTAGGA 59.965 50.000 0.00 0.00 0.00 2.94
2292 2459 2.223971 ACACTCCACTGTCACGTTTAGG 60.224 50.000 0.00 0.00 0.00 2.69
2293 2460 2.794910 CACACTCCACTGTCACGTTTAG 59.205 50.000 0.00 0.00 0.00 1.85
2294 2461 2.816689 CACACTCCACTGTCACGTTTA 58.183 47.619 0.00 0.00 0.00 2.01
2295 2462 1.651987 CACACTCCACTGTCACGTTT 58.348 50.000 0.00 0.00 0.00 3.60
2296 2463 0.810031 GCACACTCCACTGTCACGTT 60.810 55.000 0.00 0.00 0.00 3.99
2297 2464 1.227263 GCACACTCCACTGTCACGT 60.227 57.895 0.00 0.00 0.00 4.49
2298 2465 1.227234 TGCACACTCCACTGTCACG 60.227 57.895 0.00 0.00 0.00 4.35
2299 2466 0.461870 TGTGCACACTCCACTGTCAC 60.462 55.000 17.42 0.00 34.38 3.67
2300 2467 0.179076 CTGTGCACACTCCACTGTCA 60.179 55.000 17.42 0.00 34.38 3.58
2301 2468 0.882042 CCTGTGCACACTCCACTGTC 60.882 60.000 17.42 0.00 34.38 3.51
2302 2469 1.146930 CCTGTGCACACTCCACTGT 59.853 57.895 17.42 0.00 34.38 3.55
2303 2470 1.146930 ACCTGTGCACACTCCACTG 59.853 57.895 17.42 4.03 34.38 3.66
2304 2471 1.146930 CACCTGTGCACACTCCACT 59.853 57.895 17.42 0.00 34.38 4.00
2305 2472 1.893808 CCACCTGTGCACACTCCAC 60.894 63.158 17.42 0.00 0.00 4.02
2306 2473 2.510411 CCACCTGTGCACACTCCA 59.490 61.111 17.42 0.00 0.00 3.86
2307 2474 2.980233 GCCACCTGTGCACACTCC 60.980 66.667 17.42 0.00 0.00 3.85
2308 2475 2.980233 GGCCACCTGTGCACACTC 60.980 66.667 17.42 3.07 0.00 3.51
2309 2476 4.586235 GGGCCACCTGTGCACACT 62.586 66.667 17.42 0.11 30.65 3.55
2310 2477 4.892965 TGGGCCACCTGTGCACAC 62.893 66.667 17.42 5.55 37.18 3.82
2311 2478 4.892965 GTGGGCCACCTGTGCACA 62.893 66.667 26.51 20.37 40.50 4.57
2320 2487 2.200337 GGAGTGTTTGGTGGGCCAC 61.200 63.158 28.69 28.69 46.01 5.01
2321 2488 2.197324 GGAGTGTTTGGTGGGCCA 59.803 61.111 0.00 0.00 44.38 5.36
2322 2489 1.785353 TAGGGAGTGTTTGGTGGGCC 61.785 60.000 0.00 0.00 0.00 5.80
2323 2490 0.111639 TTAGGGAGTGTTTGGTGGGC 59.888 55.000 0.00 0.00 0.00 5.36
2324 2491 2.235891 GTTTAGGGAGTGTTTGGTGGG 58.764 52.381 0.00 0.00 0.00 4.61
2325 2492 1.877443 CGTTTAGGGAGTGTTTGGTGG 59.123 52.381 0.00 0.00 0.00 4.61
2326 2493 2.289547 CACGTTTAGGGAGTGTTTGGTG 59.710 50.000 0.00 0.00 0.00 4.17
2327 2494 2.171027 TCACGTTTAGGGAGTGTTTGGT 59.829 45.455 0.00 0.00 37.20 3.67
2328 2495 2.546789 GTCACGTTTAGGGAGTGTTTGG 59.453 50.000 0.00 0.00 37.20 3.28
2329 2496 3.199677 TGTCACGTTTAGGGAGTGTTTG 58.800 45.455 0.00 0.00 37.20 2.93
2330 2497 3.118519 ACTGTCACGTTTAGGGAGTGTTT 60.119 43.478 0.00 0.00 37.20 2.83
2331 2498 2.433239 ACTGTCACGTTTAGGGAGTGTT 59.567 45.455 0.00 0.00 37.20 3.32
2332 2499 2.037144 ACTGTCACGTTTAGGGAGTGT 58.963 47.619 0.00 0.00 37.20 3.55
2333 2500 2.404215 CACTGTCACGTTTAGGGAGTG 58.596 52.381 0.00 0.00 37.24 3.51
2336 2503 1.616865 CTCCACTGTCACGTTTAGGGA 59.383 52.381 0.00 0.00 0.00 4.20
2343 2510 1.227263 GCACACTCCACTGTCACGT 60.227 57.895 0.00 0.00 0.00 4.49
2346 2513 0.829990 TCTTGCACACTCCACTGTCA 59.170 50.000 0.00 0.00 0.00 3.58
2357 2524 3.552132 TCCTAACAGTGTTCTTGCACA 57.448 42.857 12.82 0.00 41.52 4.57
2363 2530 6.402222 GTGAAGATCATCCTAACAGTGTTCT 58.598 40.000 12.82 0.00 0.00 3.01
2364 2531 5.582665 GGTGAAGATCATCCTAACAGTGTTC 59.417 44.000 12.82 0.00 0.00 3.18
2365 2532 5.491982 GGTGAAGATCATCCTAACAGTGTT 58.508 41.667 14.05 14.05 0.00 3.32
2366 2533 4.382040 CGGTGAAGATCATCCTAACAGTGT 60.382 45.833 0.00 0.00 0.00 3.55
2367 2534 4.115516 CGGTGAAGATCATCCTAACAGTG 58.884 47.826 0.00 0.00 0.00 3.66
2368 2535 3.769844 ACGGTGAAGATCATCCTAACAGT 59.230 43.478 0.00 0.00 0.00 3.55
2369 2536 4.115516 CACGGTGAAGATCATCCTAACAG 58.884 47.826 0.74 0.00 0.00 3.16
2370 2537 3.513912 ACACGGTGAAGATCATCCTAACA 59.486 43.478 16.29 0.00 0.00 2.41
2371 2538 3.865745 CACACGGTGAAGATCATCCTAAC 59.134 47.826 16.29 0.00 35.23 2.34
2372 2539 3.118775 CCACACGGTGAAGATCATCCTAA 60.119 47.826 16.29 0.00 35.23 2.69
2373 2540 2.430694 CCACACGGTGAAGATCATCCTA 59.569 50.000 16.29 0.00 35.23 2.94
2374 2541 1.208052 CCACACGGTGAAGATCATCCT 59.792 52.381 16.29 0.00 35.23 3.24
2375 2542 1.656652 CCACACGGTGAAGATCATCC 58.343 55.000 16.29 0.00 35.23 3.51
2376 2543 1.656652 CCCACACGGTGAAGATCATC 58.343 55.000 16.29 0.00 35.23 2.92
2377 2544 0.392998 GCCCACACGGTGAAGATCAT 60.393 55.000 16.29 0.00 35.23 2.45
2378 2545 1.003839 GCCCACACGGTGAAGATCA 60.004 57.895 16.29 0.00 35.23 2.92
2379 2546 1.745489 GGCCCACACGGTGAAGATC 60.745 63.158 16.29 0.00 35.23 2.75
2380 2547 2.351276 GGCCCACACGGTGAAGAT 59.649 61.111 16.29 0.00 35.23 2.40
2381 2548 4.308458 CGGCCCACACGGTGAAGA 62.308 66.667 16.29 0.00 35.23 2.87
2382 2549 4.619227 ACGGCCCACACGGTGAAG 62.619 66.667 16.29 6.75 35.23 3.02
2383 2550 4.920112 CACGGCCCACACGGTGAA 62.920 66.667 16.29 0.00 41.85 3.18
2389 2556 3.660111 GTTGAGCACGGCCCACAC 61.660 66.667 0.00 0.00 0.00 3.82
2390 2557 4.182433 TGTTGAGCACGGCCCACA 62.182 61.111 0.00 0.00 0.00 4.17
2391 2558 3.357079 CTGTTGAGCACGGCCCAC 61.357 66.667 0.00 0.00 0.00 4.61
2392 2559 3.555324 TCTGTTGAGCACGGCCCA 61.555 61.111 0.00 0.00 0.00 5.36
2393 2560 3.050275 GTCTGTTGAGCACGGCCC 61.050 66.667 0.00 0.00 0.00 5.80
2394 2561 0.391130 TATGTCTGTTGAGCACGGCC 60.391 55.000 0.00 0.00 0.00 6.13
2395 2562 1.128692 GTTATGTCTGTTGAGCACGGC 59.871 52.381 0.00 0.00 0.00 5.68
2396 2563 1.732259 GGTTATGTCTGTTGAGCACGG 59.268 52.381 0.00 0.00 0.00 4.94
2397 2564 1.732259 GGGTTATGTCTGTTGAGCACG 59.268 52.381 0.00 0.00 0.00 5.34
2398 2565 3.059352 AGGGTTATGTCTGTTGAGCAC 57.941 47.619 0.00 0.00 0.00 4.40
2399 2566 3.788227 AAGGGTTATGTCTGTTGAGCA 57.212 42.857 0.00 0.00 0.00 4.26
2400 2567 5.390567 CGTTTAAGGGTTATGTCTGTTGAGC 60.391 44.000 0.00 0.00 0.00 4.26
2401 2568 5.699458 ACGTTTAAGGGTTATGTCTGTTGAG 59.301 40.000 0.00 0.00 0.00 3.02
2402 2569 5.467399 CACGTTTAAGGGTTATGTCTGTTGA 59.533 40.000 0.00 0.00 0.00 3.18
2403 2570 5.467399 TCACGTTTAAGGGTTATGTCTGTTG 59.533 40.000 0.00 0.00 0.00 3.33
2404 2571 5.467735 GTCACGTTTAAGGGTTATGTCTGTT 59.532 40.000 0.00 0.00 0.00 3.16
2405 2572 4.992951 GTCACGTTTAAGGGTTATGTCTGT 59.007 41.667 0.00 0.00 0.00 3.41
2406 2573 4.992319 TGTCACGTTTAAGGGTTATGTCTG 59.008 41.667 0.00 0.00 0.00 3.51
2407 2574 5.217978 TGTCACGTTTAAGGGTTATGTCT 57.782 39.130 0.00 0.00 0.00 3.41
2408 2575 4.992951 ACTGTCACGTTTAAGGGTTATGTC 59.007 41.667 0.00 0.00 0.00 3.06
2409 2576 4.753107 CACTGTCACGTTTAAGGGTTATGT 59.247 41.667 0.00 0.00 0.00 2.29
2410 2577 4.153475 CCACTGTCACGTTTAAGGGTTATG 59.847 45.833 0.00 0.00 0.00 1.90
2411 2578 4.040706 TCCACTGTCACGTTTAAGGGTTAT 59.959 41.667 0.00 0.00 0.00 1.89
2412 2579 3.387374 TCCACTGTCACGTTTAAGGGTTA 59.613 43.478 0.00 0.00 0.00 2.85
2413 2580 2.171027 TCCACTGTCACGTTTAAGGGTT 59.829 45.455 0.00 0.00 0.00 4.11
2414 2581 1.764134 TCCACTGTCACGTTTAAGGGT 59.236 47.619 0.00 0.00 0.00 4.34
2415 2582 2.224209 ACTCCACTGTCACGTTTAAGGG 60.224 50.000 0.00 0.00 0.00 3.95
2416 2583 2.800544 CACTCCACTGTCACGTTTAAGG 59.199 50.000 0.00 0.00 0.00 2.69
2417 2584 3.245284 CACACTCCACTGTCACGTTTAAG 59.755 47.826 0.00 0.00 0.00 1.85
2418 2585 3.191669 CACACTCCACTGTCACGTTTAA 58.808 45.455 0.00 0.00 0.00 1.52
2419 2586 2.816689 CACACTCCACTGTCACGTTTA 58.183 47.619 0.00 0.00 0.00 2.01
2420 2587 1.651987 CACACTCCACTGTCACGTTT 58.348 50.000 0.00 0.00 0.00 3.60
2421 2588 0.810031 GCACACTCCACTGTCACGTT 60.810 55.000 0.00 0.00 0.00 3.99
2422 2589 1.227263 GCACACTCCACTGTCACGT 60.227 57.895 0.00 0.00 0.00 4.49
2423 2590 0.809636 TTGCACACTCCACTGTCACG 60.810 55.000 0.00 0.00 0.00 4.35
2424 2591 0.940126 CTTGCACACTCCACTGTCAC 59.060 55.000 0.00 0.00 0.00 3.67
2425 2592 0.829990 TCTTGCACACTCCACTGTCA 59.170 50.000 0.00 0.00 0.00 3.58
2426 2593 1.599542 GTTCTTGCACACTCCACTGTC 59.400 52.381 0.00 0.00 0.00 3.51
2427 2594 1.065491 TGTTCTTGCACACTCCACTGT 60.065 47.619 0.00 0.00 0.00 3.55
2428 2595 1.331756 GTGTTCTTGCACACTCCACTG 59.668 52.381 0.00 0.00 43.32 3.66
2429 2596 1.668419 GTGTTCTTGCACACTCCACT 58.332 50.000 0.00 0.00 43.32 4.00
2435 2602 3.202906 TCCTAACAGTGTTCTTGCACAC 58.797 45.455 12.82 0.00 46.48 3.82
2436 2603 3.552132 TCCTAACAGTGTTCTTGCACA 57.448 42.857 12.82 0.00 41.52 4.57
2437 2604 4.065088 TCATCCTAACAGTGTTCTTGCAC 58.935 43.478 12.82 0.00 39.51 4.57
2438 2605 4.350368 TCATCCTAACAGTGTTCTTGCA 57.650 40.909 12.82 0.00 0.00 4.08
2439 2606 5.181748 AGATCATCCTAACAGTGTTCTTGC 58.818 41.667 12.82 0.00 0.00 4.01
2440 2607 6.758886 GGTAGATCATCCTAACAGTGTTCTTG 59.241 42.308 12.82 6.44 0.00 3.02
2441 2608 6.127026 GGGTAGATCATCCTAACAGTGTTCTT 60.127 42.308 12.82 0.00 0.00 2.52
2442 2609 5.364157 GGGTAGATCATCCTAACAGTGTTCT 59.636 44.000 12.82 3.38 0.00 3.01
2443 2610 5.453480 GGGGTAGATCATCCTAACAGTGTTC 60.453 48.000 12.82 0.00 0.00 3.18
2444 2611 4.409247 GGGGTAGATCATCCTAACAGTGTT 59.591 45.833 14.05 14.05 0.00 3.32
2445 2612 3.967987 GGGGTAGATCATCCTAACAGTGT 59.032 47.826 0.00 0.00 0.00 3.55
2446 2613 3.005897 CGGGGTAGATCATCCTAACAGTG 59.994 52.174 0.00 0.00 0.00 3.66
2447 2614 3.231818 CGGGGTAGATCATCCTAACAGT 58.768 50.000 0.00 0.00 0.00 3.55
2448 2615 3.231818 ACGGGGTAGATCATCCTAACAG 58.768 50.000 0.00 0.00 0.00 3.16
2449 2616 3.323774 ACGGGGTAGATCATCCTAACA 57.676 47.619 0.00 0.00 0.00 2.41
2450 2617 4.159879 CCATACGGGGTAGATCATCCTAAC 59.840 50.000 0.00 0.00 0.00 2.34
2451 2618 4.350245 CCATACGGGGTAGATCATCCTAA 58.650 47.826 0.00 0.00 0.00 2.69
2452 2619 3.977312 CCATACGGGGTAGATCATCCTA 58.023 50.000 0.00 0.00 0.00 2.94
2453 2620 2.821437 CCATACGGGGTAGATCATCCT 58.179 52.381 0.00 0.00 0.00 3.24
2483 2650 2.365635 ATCTGAGGGTCCGGTGGG 60.366 66.667 0.00 0.00 0.00 4.61
2484 2651 2.435693 GGATCTGAGGGTCCGGTGG 61.436 68.421 0.00 0.00 0.00 4.61
2485 2652 3.221222 GGATCTGAGGGTCCGGTG 58.779 66.667 0.00 0.00 0.00 4.94
2489 2656 2.501610 GCACGGATCTGAGGGTCC 59.498 66.667 9.00 0.00 0.00 4.46
2490 2657 2.501610 GGCACGGATCTGAGGGTC 59.498 66.667 9.00 0.00 0.00 4.46
2491 2658 3.083997 GGGCACGGATCTGAGGGT 61.084 66.667 9.00 0.00 0.00 4.34
2492 2659 2.765807 AGGGCACGGATCTGAGGG 60.766 66.667 9.00 0.00 0.00 4.30
2493 2660 1.406065 ATCAGGGCACGGATCTGAGG 61.406 60.000 9.00 0.89 40.32 3.86
2494 2661 0.033228 GATCAGGGCACGGATCTGAG 59.967 60.000 20.31 0.64 42.66 3.35
2495 2662 0.687427 TGATCAGGGCACGGATCTGA 60.687 55.000 26.18 7.74 45.11 3.27
2496 2663 0.249784 CTGATCAGGGCACGGATCTG 60.250 60.000 26.18 22.30 45.11 2.90
2497 2664 1.406065 CCTGATCAGGGCACGGATCT 61.406 60.000 31.14 0.00 45.11 2.75
2498 2665 1.070445 CCTGATCAGGGCACGGATC 59.930 63.158 31.14 20.71 45.09 3.36
2499 2666 3.234349 CCTGATCAGGGCACGGAT 58.766 61.111 31.14 0.00 44.87 4.18
2508 2675 0.534412 AGTTGAGCGTCCCTGATCAG 59.466 55.000 16.24 16.24 35.43 2.90
2509 2676 0.532573 GAGTTGAGCGTCCCTGATCA 59.467 55.000 0.00 0.00 31.37 2.92
2510 2677 0.532573 TGAGTTGAGCGTCCCTGATC 59.467 55.000 0.00 0.00 0.00 2.92
2511 2678 0.247736 GTGAGTTGAGCGTCCCTGAT 59.752 55.000 0.00 0.00 0.00 2.90
2512 2679 0.827925 AGTGAGTTGAGCGTCCCTGA 60.828 55.000 0.00 0.00 0.00 3.86
2513 2680 0.888619 TAGTGAGTTGAGCGTCCCTG 59.111 55.000 0.00 0.00 0.00 4.45
2514 2681 1.478510 CATAGTGAGTTGAGCGTCCCT 59.521 52.381 0.00 0.00 0.00 4.20
2515 2682 1.204941 ACATAGTGAGTTGAGCGTCCC 59.795 52.381 0.00 0.00 0.00 4.46
2516 2683 2.656560 ACATAGTGAGTTGAGCGTCC 57.343 50.000 0.00 0.00 0.00 4.79
2523 2690 1.732259 GCCCGTCAACATAGTGAGTTG 59.268 52.381 0.00 0.00 45.82 3.16
2524 2691 1.338769 GGCCCGTCAACATAGTGAGTT 60.339 52.381 0.00 0.00 0.00 3.01
2525 2692 0.249398 GGCCCGTCAACATAGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
2526 2693 0.462047 GGGCCCGTCAACATAGTGAG 60.462 60.000 5.69 0.00 0.00 3.51
2527 2694 1.600107 GGGCCCGTCAACATAGTGA 59.400 57.895 5.69 0.00 0.00 3.41
2528 2695 1.451387 GGGGCCCGTCAACATAGTG 60.451 63.158 17.79 0.00 0.00 2.74
2529 2696 1.615424 AGGGGCCCGTCAACATAGT 60.615 57.895 18.95 0.00 0.00 2.12
2530 2697 1.153168 CAGGGGCCCGTCAACATAG 60.153 63.158 18.95 0.00 0.00 2.23
2531 2698 1.906105 GACAGGGGCCCGTCAACATA 61.906 60.000 30.08 0.00 31.22 2.29
2532 2699 3.256960 ACAGGGGCCCGTCAACAT 61.257 61.111 18.95 0.00 0.00 2.71
2533 2700 3.948719 GACAGGGGCCCGTCAACA 61.949 66.667 30.08 0.00 31.22 3.33
2534 2701 3.948719 TGACAGGGGCCCGTCAAC 61.949 66.667 33.24 19.43 35.45 3.18
2535 2702 3.948719 GTGACAGGGGCCCGTCAA 61.949 66.667 35.33 23.44 38.19 3.18
2542 2709 1.915078 ATAGTGCAGGTGACAGGGGC 61.915 60.000 0.00 0.00 0.00 5.80
2543 2710 1.496060 TATAGTGCAGGTGACAGGGG 58.504 55.000 0.00 0.00 0.00 4.79
2544 2711 4.955811 TTATATAGTGCAGGTGACAGGG 57.044 45.455 0.00 0.00 0.00 4.45
2545 2712 6.260936 CCTTTTTATATAGTGCAGGTGACAGG 59.739 42.308 0.00 0.00 0.00 4.00
2546 2713 6.823689 ACCTTTTTATATAGTGCAGGTGACAG 59.176 38.462 0.00 0.00 31.75 3.51
2547 2714 6.717289 ACCTTTTTATATAGTGCAGGTGACA 58.283 36.000 0.00 0.00 31.75 3.58
2550 2717 5.299279 CCCACCTTTTTATATAGTGCAGGTG 59.701 44.000 17.61 17.61 46.38 4.00
2551 2718 5.445964 CCCACCTTTTTATATAGTGCAGGT 58.554 41.667 0.00 0.00 33.24 4.00
2552 2719 4.827284 CCCCACCTTTTTATATAGTGCAGG 59.173 45.833 0.00 0.00 0.00 4.85
2553 2720 4.278419 GCCCCACCTTTTTATATAGTGCAG 59.722 45.833 0.00 0.00 0.00 4.41
2554 2721 4.211920 GCCCCACCTTTTTATATAGTGCA 58.788 43.478 0.00 0.00 0.00 4.57
2555 2722 3.572682 GGCCCCACCTTTTTATATAGTGC 59.427 47.826 0.00 0.00 34.51 4.40
2556 2723 3.818773 CGGCCCCACCTTTTTATATAGTG 59.181 47.826 0.00 0.00 35.61 2.74
2557 2724 3.749632 GCGGCCCCACCTTTTTATATAGT 60.750 47.826 0.00 0.00 35.61 2.12
2558 2725 2.817844 GCGGCCCCACCTTTTTATATAG 59.182 50.000 0.00 0.00 35.61 1.31
2559 2726 2.811136 CGCGGCCCCACCTTTTTATATA 60.811 50.000 0.00 0.00 35.61 0.86
2560 2727 1.699730 GCGGCCCCACCTTTTTATAT 58.300 50.000 0.00 0.00 35.61 0.86
2561 2728 0.748729 CGCGGCCCCACCTTTTTATA 60.749 55.000 0.00 0.00 35.61 0.98
2562 2729 2.049767 CGCGGCCCCACCTTTTTAT 61.050 57.895 0.00 0.00 35.61 1.40
2563 2730 2.673687 CGCGGCCCCACCTTTTTA 60.674 61.111 0.00 0.00 35.61 1.52
2611 2778 4.400961 AGACGGGAGCAGGCAAGC 62.401 66.667 0.00 0.00 0.00 4.01
2612 2779 2.125350 GAGACGGGAGCAGGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
2613 2780 3.706373 GGAGACGGGAGCAGGCAA 61.706 66.667 0.00 0.00 0.00 4.52
2614 2781 4.704103 AGGAGACGGGAGCAGGCA 62.704 66.667 0.00 0.00 0.00 4.75
2615 2782 4.154347 CAGGAGACGGGAGCAGGC 62.154 72.222 0.00 0.00 0.00 4.85
2616 2783 4.154347 GCAGGAGACGGGAGCAGG 62.154 72.222 0.00 0.00 0.00 4.85
2617 2784 3.073735 AGCAGGAGACGGGAGCAG 61.074 66.667 0.00 0.00 0.00 4.24
2618 2785 3.071206 GAGCAGGAGACGGGAGCA 61.071 66.667 0.00 0.00 0.00 4.26
2619 2786 3.844090 GGAGCAGGAGACGGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
2620 2787 3.151022 GGGAGCAGGAGACGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
2621 2788 3.317436 ATGGGAGCAGGAGACGGGA 62.317 63.158 0.00 0.00 0.00 5.14
2622 2789 2.765807 ATGGGAGCAGGAGACGGG 60.766 66.667 0.00 0.00 0.00 5.28
2623 2790 2.801631 GGATGGGAGCAGGAGACGG 61.802 68.421 0.00 0.00 0.00 4.79
2624 2791 2.818132 GGATGGGAGCAGGAGACG 59.182 66.667 0.00 0.00 0.00 4.18
2625 2792 2.060980 ACGGATGGGAGCAGGAGAC 61.061 63.158 0.00 0.00 0.00 3.36
2626 2793 2.060383 CACGGATGGGAGCAGGAGA 61.060 63.158 0.00 0.00 0.00 3.71
2627 2794 2.503061 CACGGATGGGAGCAGGAG 59.497 66.667 0.00 0.00 0.00 3.69
2628 2795 3.785859 GCACGGATGGGAGCAGGA 61.786 66.667 0.00 0.00 0.00 3.86
2629 2796 3.746949 GAGCACGGATGGGAGCAGG 62.747 68.421 0.00 0.00 0.00 4.85
2630 2797 2.202987 GAGCACGGATGGGAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
2631 2798 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
2632 2799 4.899239 CGGAGCACGGATGGGAGC 62.899 72.222 0.00 0.00 39.42 4.70
2645 2812 4.424430 CAAACGAACGGCGCGGAG 62.424 66.667 22.76 13.99 46.04 4.63
2652 2819 1.007964 TGCAATGCCAAACGAACGG 60.008 52.632 1.53 0.00 0.00 4.44
2653 2820 1.595982 CGTGCAATGCCAAACGAACG 61.596 55.000 10.46 4.32 38.27 3.95
2654 2821 1.274798 CCGTGCAATGCCAAACGAAC 61.275 55.000 16.40 0.00 38.27 3.95
2655 2822 1.007964 CCGTGCAATGCCAAACGAA 60.008 52.632 16.40 0.00 38.27 3.85
2656 2823 2.642129 CCGTGCAATGCCAAACGA 59.358 55.556 16.40 0.00 38.27 3.85
2657 2824 3.105157 GCCGTGCAATGCCAAACG 61.105 61.111 9.22 9.22 35.85 3.60
2658 2825 1.734117 GAGCCGTGCAATGCCAAAC 60.734 57.895 1.53 0.00 0.00 2.93
2659 2826 2.650196 GAGCCGTGCAATGCCAAA 59.350 55.556 1.53 0.00 0.00 3.28
2660 2827 3.372730 GGAGCCGTGCAATGCCAA 61.373 61.111 1.53 0.00 0.00 4.52
2661 2828 3.942377 ATGGAGCCGTGCAATGCCA 62.942 57.895 1.53 1.76 0.00 4.92
2662 2829 3.129913 GATGGAGCCGTGCAATGCC 62.130 63.158 1.53 0.00 0.00 4.40
2663 2830 1.936436 TTGATGGAGCCGTGCAATGC 61.936 55.000 0.00 0.00 0.00 3.56
2664 2831 0.742505 ATTGATGGAGCCGTGCAATG 59.257 50.000 0.00 0.00 0.00 2.82
2665 2832 1.477553 AATTGATGGAGCCGTGCAAT 58.522 45.000 0.00 0.00 0.00 3.56
2666 2833 1.202114 GAAATTGATGGAGCCGTGCAA 59.798 47.619 0.00 0.00 0.00 4.08
2667 2834 0.810648 GAAATTGATGGAGCCGTGCA 59.189 50.000 0.00 0.00 0.00 4.57
2668 2835 0.101219 GGAAATTGATGGAGCCGTGC 59.899 55.000 0.00 0.00 0.00 5.34
2669 2836 0.740737 GGGAAATTGATGGAGCCGTG 59.259 55.000 0.00 0.00 0.00 4.94
2670 2837 0.625849 AGGGAAATTGATGGAGCCGT 59.374 50.000 0.00 0.00 0.00 5.68
2671 2838 3.502164 AGGGAAATTGATGGAGCCG 57.498 52.632 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.