Multiple sequence alignment - TraesCS4D01G185000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G185000 chr4D 100.000 9941 0 0 1 9941 323108390 323098450 0.000000e+00 18358.0
1 TraesCS4D01G185000 chr4D 98.138 1235 21 2 1930 3163 306847778 306846545 0.000000e+00 2152.0
2 TraesCS4D01G185000 chr4D 97.731 1234 27 1 1930 3163 170661764 170662996 0.000000e+00 2122.0
3 TraesCS4D01G185000 chr4D 97.650 1234 27 2 1930 3163 184289791 184291022 0.000000e+00 2117.0
4 TraesCS4D01G185000 chr4D 97.488 1234 30 1 1930 3163 377579224 377577992 0.000000e+00 2106.0
5 TraesCS4D01G185000 chr4D 97.347 490 11 2 3168 3655 359923303 359922814 0.000000e+00 832.0
6 TraesCS4D01G185000 chr4D 97.149 491 13 1 3166 3655 296375641 296376131 0.000000e+00 828.0
7 TraesCS4D01G185000 chr4D 87.050 139 12 2 8741 8879 98451685 98451553 1.730000e-32 152.0
8 TraesCS4D01G185000 chr4D 87.805 82 6 4 8742 8822 12547866 12547944 1.060000e-14 93.5
9 TraesCS4D01G185000 chr4D 88.000 75 5 3 8749 8822 80973225 80973154 1.780000e-12 86.1
10 TraesCS4D01G185000 chr4D 90.625 64 4 2 6296 6357 382324434 382324497 6.400000e-12 84.2
11 TraesCS4D01G185000 chr4D 88.732 71 1 3 6302 6365 427262322 427262392 8.280000e-11 80.5
12 TraesCS4D01G185000 chr4D 97.778 45 1 0 466 510 390735349 390735393 2.980000e-10 78.7
13 TraesCS4D01G185000 chr4D 93.878 49 3 0 465 513 374314870 374314822 3.850000e-09 75.0
14 TraesCS4D01G185000 chr4D 95.349 43 2 0 468 510 9208837 9208795 1.790000e-07 69.4
15 TraesCS4D01G185000 chr4D 90.566 53 4 1 459 511 497415547 497415598 1.790000e-07 69.4
16 TraesCS4D01G185000 chr4D 90.566 53 4 1 459 511 497418967 497419018 1.790000e-07 69.4
17 TraesCS4D01G185000 chr4D 90.566 53 4 1 459 511 497422584 497422635 1.790000e-07 69.4
18 TraesCS4D01G185000 chr4D 90.566 53 4 1 459 511 497426070 497426121 1.790000e-07 69.4
19 TraesCS4D01G185000 chr4D 90.385 52 4 1 460 511 497410016 497410066 6.440000e-07 67.6
20 TraesCS4D01G185000 chr4B 96.794 5116 93 23 3656 8746 403260805 403255736 0.000000e+00 8473.0
21 TraesCS4D01G185000 chr4B 90.934 1092 46 18 530 1595 403262327 403261263 0.000000e+00 1419.0
22 TraesCS4D01G185000 chr4B 85.638 752 54 13 9208 9940 403255499 403254783 0.000000e+00 741.0
23 TraesCS4D01G185000 chr4B 95.252 337 15 1 1594 1929 403261137 403260801 5.290000e-147 532.0
24 TraesCS4D01G185000 chr4B 91.810 232 17 1 8880 9109 403255732 403255501 1.250000e-83 322.0
25 TraesCS4D01G185000 chr4B 96.111 180 6 1 247 426 403262611 403262433 9.770000e-75 292.0
26 TraesCS4D01G185000 chr4B 89.944 179 4 2 1 178 403262798 403262633 1.680000e-52 219.0
27 TraesCS4D01G185000 chr4B 92.754 69 5 0 8820 8888 140891568 140891636 6.350000e-17 100.0
28 TraesCS4D01G185000 chr4B 89.189 74 5 3 8811 8882 487655556 487655628 1.380000e-13 89.8
29 TraesCS4D01G185000 chr4B 95.745 47 2 0 465 511 450913919 450913873 1.070000e-09 76.8
30 TraesCS4D01G185000 chr4B 92.308 52 4 0 459 510 16092463 16092514 3.850000e-09 75.0
31 TraesCS4D01G185000 chr4A 96.211 5147 112 27 3656 8746 149040122 149045241 0.000000e+00 8347.0
32 TraesCS4D01G185000 chr4A 95.713 1073 34 9 868 1929 149039055 149040126 0.000000e+00 1716.0
33 TraesCS4D01G185000 chr4A 86.900 542 42 7 9207 9721 149045477 149046016 1.860000e-161 580.0
34 TraesCS4D01G185000 chr4A 82.647 680 62 27 1 668 149038220 149038855 1.460000e-152 551.0
35 TraesCS4D01G185000 chr4A 92.735 234 15 1 8880 9111 149045245 149045478 4.450000e-88 337.0
36 TraesCS4D01G185000 chr4A 87.050 139 12 2 8741 8879 477880017 477880149 1.730000e-32 152.0
37 TraesCS4D01G185000 chr4A 96.226 53 2 0 459 511 37058778 37058830 4.950000e-13 87.9
38 TraesCS4D01G185000 chr4A 80.328 122 16 5 8753 8867 2397896 2397776 1.780000e-12 86.1
39 TraesCS4D01G185000 chr4A 94.231 52 3 0 459 510 450788323 450788272 8.280000e-11 80.5
40 TraesCS4D01G185000 chr7D 97.492 1236 28 3 1930 3163 276068233 276069467 0.000000e+00 2108.0
41 TraesCS4D01G185000 chr7D 97.411 1236 29 3 1930 3163 276077072 276078306 0.000000e+00 2102.0
42 TraesCS4D01G185000 chr7D 97.326 1234 33 0 1930 3163 273189068 273187835 0.000000e+00 2097.0
43 TraesCS4D01G185000 chr7D 96.610 59 2 0 8823 8881 485101743 485101685 2.290000e-16 99.0
44 TraesCS4D01G185000 chr7D 93.750 64 4 0 8823 8886 98621916 98621979 8.220000e-16 97.1
45 TraesCS4D01G185000 chr7D 93.846 65 1 2 6303 6365 604972524 604972461 2.960000e-15 95.3
46 TraesCS4D01G185000 chr5D 97.488 1234 30 1 1930 3163 205923202 205924434 0.000000e+00 2106.0
47 TraesCS4D01G185000 chr5D 96.586 498 13 3 3161 3655 95612494 95611998 0.000000e+00 822.0
48 TraesCS4D01G185000 chr5D 95.455 66 0 3 6302 6365 412311780 412311716 1.770000e-17 102.0
49 TraesCS4D01G185000 chr5D 94.118 68 1 2 6301 6365 41139967 41140034 6.350000e-17 100.0
50 TraesCS4D01G185000 chr5D 93.939 66 2 1 6302 6365 39033180 39033245 2.290000e-16 99.0
51 TraesCS4D01G185000 chr5D 89.231 65 6 1 8748 8812 356319441 356319504 8.280000e-11 80.5
52 TraesCS4D01G185000 chr5D 94.000 50 2 1 465 513 264370825 264370776 3.850000e-09 75.0
53 TraesCS4D01G185000 chr5D 92.157 51 4 0 459 509 37210064 37210114 1.390000e-08 73.1
54 TraesCS4D01G185000 chr5D 94.872 39 2 0 8751 8789 98296503 98296465 3.000000e-05 62.1
55 TraesCS4D01G185000 chr5D 91.111 45 4 0 8751 8795 497870312 497870268 3.000000e-05 62.1
56 TraesCS4D01G185000 chr3D 97.330 1236 30 2 1929 3163 306954338 306955571 0.000000e+00 2097.0
57 TraesCS4D01G185000 chr3D 97.755 490 10 1 3167 3655 437837949 437837460 0.000000e+00 843.0
58 TraesCS4D01G185000 chr3D 97.347 490 12 1 3167 3655 435987277 435986788 0.000000e+00 832.0
59 TraesCS4D01G185000 chr3D 97.342 489 12 1 3168 3655 435979193 435978705 0.000000e+00 830.0
60 TraesCS4D01G185000 chr3D 96.586 498 13 3 3161 3656 444044948 444045443 0.000000e+00 822.0
61 TraesCS4D01G185000 chr3D 91.250 80 6 1 9259 9337 168503885 168503964 3.800000e-19 108.0
62 TraesCS4D01G185000 chr3D 94.545 55 3 0 8753 8807 104702100 104702154 1.780000e-12 86.1
63 TraesCS4D01G185000 chr1D 97.149 491 12 2 3166 3655 299120473 299119984 0.000000e+00 828.0
64 TraesCS4D01G185000 chr1D 88.542 96 6 3 9262 9357 46103846 46103756 2.940000e-20 111.0
65 TraesCS4D01G185000 chr1D 91.892 74 3 3 8751 8822 41825981 41825909 6.350000e-17 100.0
66 TraesCS4D01G185000 chr1D 95.312 64 0 2 6302 6363 15516888 15516950 2.290000e-16 99.0
67 TraesCS4D01G185000 chr1D 89.189 74 2 2 6302 6369 488963838 488963765 4.950000e-13 87.9
68 TraesCS4D01G185000 chr1D 86.076 79 3 3 6295 6365 211683121 211683199 2.980000e-10 78.7
69 TraesCS4D01G185000 chr6D 96.393 499 14 4 3160 3655 291174135 291173638 0.000000e+00 819.0
70 TraesCS4D01G185000 chr6D 92.683 82 5 1 8741 8822 84938451 84938531 6.310000e-22 117.0
71 TraesCS4D01G185000 chr6D 94.737 76 3 1 8747 8822 84938544 84938470 6.310000e-22 117.0
72 TraesCS4D01G185000 chr6D 93.846 65 4 0 8823 8887 1548811 1548747 2.290000e-16 99.0
73 TraesCS4D01G185000 chr6D 93.651 63 4 0 8823 8885 84938514 84938452 2.960000e-15 95.3
74 TraesCS4D01G185000 chr6D 96.491 57 2 0 8823 8879 84938487 84938543 2.960000e-15 95.3
75 TraesCS4D01G185000 chr6D 95.000 60 3 0 8823 8882 413410096 413410037 2.960000e-15 95.3
76 TraesCS4D01G185000 chr6D 93.651 63 4 0 8823 8885 413410069 413410131 2.960000e-15 95.3
77 TraesCS4D01G185000 chr6D 87.805 82 5 4 6284 6363 469423159 469423237 3.820000e-14 91.6
78 TraesCS4D01G185000 chr6D 92.308 65 2 2 6301 6363 25612733 25612796 1.380000e-13 89.8
79 TraesCS4D01G185000 chr6D 94.737 57 3 0 8823 8879 434509294 434509350 1.380000e-13 89.8
80 TraesCS4D01G185000 chr6D 94.340 53 3 0 459 511 325713102 325713154 2.300000e-11 82.4
81 TraesCS4D01G185000 chr6D 89.231 65 5 2 6303 6365 12489861 12489797 8.280000e-11 80.5
82 TraesCS4D01G185000 chr6D 89.394 66 4 2 6303 6365 86550851 86550916 8.280000e-11 80.5
83 TraesCS4D01G185000 chr6D 89.394 66 1 2 6302 6365 86643238 86643299 2.980000e-10 78.7
84 TraesCS4D01G185000 chr6D 100.000 40 0 0 6326 6365 14974245 14974206 3.850000e-09 75.0
85 TraesCS4D01G185000 chr6D 90.566 53 4 1 459 511 379578827 379578776 1.790000e-07 69.4
86 TraesCS4D01G185000 chr5A 88.000 100 6 4 9259 9357 705520313 705520219 8.160000e-21 113.0
87 TraesCS4D01G185000 chr5A 96.970 66 0 1 6302 6365 422040424 422040359 1.060000e-19 110.0
88 TraesCS4D01G185000 chr5A 92.857 70 1 2 6300 6365 624782120 624782051 2.290000e-16 99.0
89 TraesCS4D01G185000 chr5A 92.754 69 2 2 6299 6365 447544499 447544566 8.220000e-16 97.1
90 TraesCS4D01G185000 chr2D 94.444 72 3 1 8751 8822 393568302 393568232 1.060000e-19 110.0
91 TraesCS4D01G185000 chr2D 93.056 72 4 1 8751 8822 70263792 70263722 4.910000e-18 104.0
92 TraesCS4D01G185000 chr2D 92.958 71 3 2 8752 8822 145889632 145889564 1.770000e-17 102.0
93 TraesCS4D01G185000 chr2D 88.372 86 8 2 8737 8822 393568210 393568293 1.770000e-17 102.0
94 TraesCS4D01G185000 chr2D 98.182 55 1 0 6303 6357 624902682 624902736 8.220000e-16 97.1
95 TraesCS4D01G185000 chr2D 93.651 63 4 0 8823 8885 564674173 564674111 2.960000e-15 95.3
96 TraesCS4D01G185000 chr2D 88.889 72 7 1 8823 8894 564674146 564674216 4.950000e-13 87.9
97 TraesCS4D01G185000 chr2D 94.231 52 3 0 459 510 612720246 612720297 8.280000e-11 80.5
98 TraesCS4D01G185000 chr6A 90.476 84 4 3 6284 6365 614533960 614534041 3.800000e-19 108.0
99 TraesCS4D01G185000 chr6A 91.667 72 5 1 8751 8822 446759422 446759352 2.290000e-16 99.0
100 TraesCS4D01G185000 chr6A 93.939 66 0 2 6302 6365 509277019 509276956 8.220000e-16 97.1
101 TraesCS4D01G185000 chr5B 93.151 73 4 1 8746 8818 568409769 568409698 1.370000e-18 106.0
102 TraesCS4D01G185000 chr7B 90.909 77 6 1 8746 8822 521143308 521143233 1.770000e-17 102.0
103 TraesCS4D01G185000 chr7B 93.846 65 2 1 6295 6357 196961113 196961049 8.220000e-16 97.1
104 TraesCS4D01G185000 chr7B 91.228 57 5 0 458 514 69537731 69537675 2.980000e-10 78.7
105 TraesCS4D01G185000 chr3A 95.385 65 1 1 6303 6365 621834406 621834342 1.770000e-17 102.0
106 TraesCS4D01G185000 chr3A 86.458 96 7 4 9262 9357 300787702 300787613 6.350000e-17 100.0
107 TraesCS4D01G185000 chr3A 89.333 75 6 2 8811 8883 60843346 60843420 1.060000e-14 93.5
108 TraesCS4D01G185000 chr1B 90.789 76 5 2 8823 8898 16522455 16522528 6.350000e-17 100.0
109 TraesCS4D01G185000 chr1B 95.833 48 2 0 466 513 279915603 279915650 2.980000e-10 78.7
110 TraesCS4D01G185000 chr3B 87.640 89 6 5 6291 6375 636452123 636452036 2.290000e-16 99.0
111 TraesCS4D01G185000 chr3B 94.340 53 2 1 459 510 67411131 67411079 8.280000e-11 80.5
112 TraesCS4D01G185000 chrUn 96.491 57 2 0 8823 8879 75836616 75836560 2.960000e-15 95.3
113 TraesCS4D01G185000 chrUn 96.491 57 2 0 8823 8879 322507541 322507597 2.960000e-15 95.3
114 TraesCS4D01G185000 chrUn 90.769 65 6 0 8823 8887 311997050 311997114 4.950000e-13 87.9
115 TraesCS4D01G185000 chrUn 90.769 65 6 0 8823 8887 379298505 379298441 4.950000e-13 87.9
116 TraesCS4D01G185000 chrUn 92.982 57 4 0 8823 8879 41396536 41396592 6.400000e-12 84.2
117 TraesCS4D01G185000 chrUn 92.982 57 4 0 8823 8879 100699427 100699371 6.400000e-12 84.2
118 TraesCS4D01G185000 chrUn 90.625 64 5 1 8823 8885 100699400 100699463 6.400000e-12 84.2
119 TraesCS4D01G185000 chrUn 92.982 57 4 0 8823 8879 104546059 104546003 6.400000e-12 84.2
120 TraesCS4D01G185000 chrUn 92.982 57 4 0 8823 8879 311997077 311997021 6.400000e-12 84.2
121 TraesCS4D01G185000 chrUn 88.235 68 2 4 6304 6365 10254732 10254799 1.070000e-09 76.8
122 TraesCS4D01G185000 chrUn 93.617 47 1 1 6325 6369 26701867 26701821 1.790000e-07 69.4
123 TraesCS4D01G185000 chrUn 95.349 43 0 2 6325 6365 28838096 28838054 6.440000e-07 67.6
124 TraesCS4D01G185000 chrUn 95.349 43 0 1 6325 6365 29722088 29722130 6.440000e-07 67.6
125 TraesCS4D01G185000 chrUn 95.349 43 0 1 6325 6365 37403285 37403243 6.440000e-07 67.6
126 TraesCS4D01G185000 chrUn 95.349 43 0 1 6325 6365 103121731 103121689 6.440000e-07 67.6
127 TraesCS4D01G185000 chrUn 86.364 66 3 4 6300 6363 156526219 156526280 6.440000e-07 67.6
128 TraesCS4D01G185000 chrUn 93.617 47 0 3 6321 6365 253929127 253929082 6.440000e-07 67.6
129 TraesCS4D01G185000 chrUn 95.238 42 1 1 6325 6365 320256140 320256099 2.320000e-06 65.8
130 TraesCS4D01G185000 chrUn 87.931 58 2 2 6330 6382 41888158 41888101 8.340000e-06 63.9
131 TraesCS4D01G185000 chrUn 90.000 50 1 3 6320 6365 37028945 37028994 3.000000e-05 62.1
132 TraesCS4D01G185000 chrUn 92.308 39 2 1 6328 6365 135058615 135058577 5.000000e-03 54.7
133 TraesCS4D01G185000 chrUn 92.308 39 2 1 6328 6365 152655469 152655431 5.000000e-03 54.7
134 TraesCS4D01G185000 chrUn 100.000 29 0 0 6299 6327 308892701 308892673 5.000000e-03 54.7
135 TraesCS4D01G185000 chr1A 92.647 68 2 2 6300 6365 290331275 290331209 2.960000e-15 95.3
136 TraesCS4D01G185000 chr1A 95.000 60 3 0 8823 8882 357764977 357764918 2.960000e-15 95.3
137 TraesCS4D01G185000 chr1A 95.000 60 3 0 8823 8882 440088237 440088178 2.960000e-15 95.3
138 TraesCS4D01G185000 chr1A 90.278 72 6 1 8751 8822 521250839 521250769 1.060000e-14 93.5
139 TraesCS4D01G185000 chr1A 91.429 70 2 2 6300 6365 583907796 583907865 1.060000e-14 93.5
140 TraesCS4D01G185000 chr1A 91.304 69 3 3 6300 6365 558328657 558328725 3.820000e-14 91.6
141 TraesCS4D01G185000 chr1A 95.349 43 2 0 8748 8790 12507171 12507213 1.790000e-07 69.4
142 TraesCS4D01G185000 chr2A 97.872 47 1 0 464 510 52577548 52577502 2.300000e-11 82.4
143 TraesCS4D01G185000 chr2A 92.982 57 3 1 459 515 195359164 195359219 2.300000e-11 82.4
144 TraesCS4D01G185000 chr7A 92.453 53 4 0 459 511 10845748 10845696 1.070000e-09 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G185000 chr4D 323098450 323108390 9940 True 18358.0 18358 100.000000 1 9941 1 chr4D.!!$R5 9940
1 TraesCS4D01G185000 chr4D 306846545 306847778 1233 True 2152.0 2152 98.138000 1930 3163 1 chr4D.!!$R4 1233
2 TraesCS4D01G185000 chr4D 170661764 170662996 1232 False 2122.0 2122 97.731000 1930 3163 1 chr4D.!!$F2 1233
3 TraesCS4D01G185000 chr4D 184289791 184291022 1231 False 2117.0 2117 97.650000 1930 3163 1 chr4D.!!$F3 1233
4 TraesCS4D01G185000 chr4D 377577992 377579224 1232 True 2106.0 2106 97.488000 1930 3163 1 chr4D.!!$R8 1233
5 TraesCS4D01G185000 chr4B 403254783 403262798 8015 True 1714.0 8473 92.354714 1 9940 7 chr4B.!!$R2 9939
6 TraesCS4D01G185000 chr4A 149038220 149046016 7796 False 2306.2 8347 90.841200 1 9721 5 chr4A.!!$F3 9720
7 TraesCS4D01G185000 chr7D 276068233 276069467 1234 False 2108.0 2108 97.492000 1930 3163 1 chr7D.!!$F2 1233
8 TraesCS4D01G185000 chr7D 276077072 276078306 1234 False 2102.0 2102 97.411000 1930 3163 1 chr7D.!!$F3 1233
9 TraesCS4D01G185000 chr7D 273187835 273189068 1233 True 2097.0 2097 97.326000 1930 3163 1 chr7D.!!$R1 1233
10 TraesCS4D01G185000 chr5D 205923202 205924434 1232 False 2106.0 2106 97.488000 1930 3163 1 chr5D.!!$F4 1233
11 TraesCS4D01G185000 chr3D 306954338 306955571 1233 False 2097.0 2097 97.330000 1929 3163 1 chr3D.!!$F3 1234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 779 0.040958 CGAGGCTTGTTGCTTGTGTC 60.041 55.000 0.00 0.00 42.39 3.67 F
1526 1653 0.459585 TTCGGCTTGCTCGTCATACC 60.460 55.000 0.00 0.00 0.00 2.73 F
2918 3176 0.549950 CTCCAGGTGCCTCAATCCAT 59.450 55.000 0.00 0.00 0.00 3.41 F
3546 3806 0.033991 TCCTCAACTCTCTCCGAGGG 60.034 60.000 4.56 0.00 44.37 4.30 F
3553 3813 0.033991 CTCTCTCCGAGGGTCCTTGA 60.034 60.000 5.84 0.00 36.06 3.02 F
3554 3814 0.033991 TCTCTCCGAGGGTCCTTGAG 60.034 60.000 5.84 8.15 0.00 3.02 F
3560 3820 0.035458 CGAGGGTCCTTGAGTTGCTT 59.965 55.000 0.00 0.00 0.00 3.91 F
4462 4722 1.066858 GTGGAATCTGGAGAAGCACGA 60.067 52.381 0.00 0.00 0.00 4.35 F
5106 5371 2.048597 TACGCAGAACAGCACCCG 60.049 61.111 0.00 0.00 0.00 5.28 F
6120 6387 2.492088 TGTGTACTCTGATCCTGGTTCG 59.508 50.000 0.00 0.00 0.00 3.95 F
6602 6910 0.673985 GGCCGGAAAAGAAGCAAGTT 59.326 50.000 5.05 0.00 0.00 2.66 F
7497 7806 0.169009 GCTGTGGAATTGCTCGTTCC 59.831 55.000 0.00 7.97 44.32 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 2857 1.064017 AGTCTTGTGGGGAAAAGTGCA 60.064 47.619 0.00 0.00 0.00 4.57 R
3176 3436 3.375922 ACGAATTATTTTCCGCGGAATGT 59.624 39.130 38.89 30.11 33.79 2.71 R
3784 4044 1.021968 ACGACAAAACAGGAAGTGGC 58.978 50.000 0.00 0.00 0.00 5.01 R
4438 4698 1.205893 GCTTCTCCAGATTCCACGTCT 59.794 52.381 0.00 0.00 0.00 4.18 R
4623 4883 1.539065 GCTCCACGTGATACAGGGATG 60.539 57.143 19.30 0.00 0.00 3.51 R
5421 5687 3.068024 ACGTTTTGGAGACTAACACGGTA 59.932 43.478 10.14 0.00 35.64 4.02 R
5644 5910 7.255836 CCATATCGGAGGTCAAGTTTATGTAGA 60.256 40.741 0.00 0.00 36.56 2.59 R
6120 6387 0.455633 CAGTTCTTCGCAGCATTGGC 60.456 55.000 0.00 0.00 41.61 4.52 R
6365 6673 2.812983 GCTGGCATCTAGAATGCATGGA 60.813 50.000 21.11 0.00 46.21 3.41 R
7497 7806 0.038526 ACGTCCTGTTGTAAGCTCCG 60.039 55.000 0.00 0.00 0.00 4.63 R
8600 8937 0.177836 TGGTGAGTGGTGTGTGTCTG 59.822 55.000 0.00 0.00 0.00 3.51 R
9199 9542 0.105039 CGCCACCAATCTACTCCCTC 59.895 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.029649 CAGCAAGCAAGCACCACTTATT 60.030 45.455 3.19 0.00 36.04 1.40
180 182 8.187480 TGTATAATAGAAACGTTTGCATGCAAT 58.813 29.630 32.27 18.17 35.70 3.56
183 185 3.916761 AGAAACGTTTGCATGCAATCAT 58.083 36.364 32.27 18.54 35.70 2.45
204 206 0.804989 GTTGTGGCTGCATGGTCTAC 59.195 55.000 0.50 0.00 0.00 2.59
211 213 1.937278 CTGCATGGTCTACAGCAGAG 58.063 55.000 7.44 0.00 45.77 3.35
212 214 0.538584 TGCATGGTCTACAGCAGAGG 59.461 55.000 0.00 0.00 32.51 3.69
213 215 0.539051 GCATGGTCTACAGCAGAGGT 59.461 55.000 0.00 0.00 32.51 3.85
214 216 1.757118 GCATGGTCTACAGCAGAGGTA 59.243 52.381 0.00 0.00 32.51 3.08
233 235 6.708054 AGAGGTACTGAACATCAACAAAGAAG 59.292 38.462 0.00 0.00 41.42 2.85
235 237 7.054124 AGGTACTGAACATCAACAAAGAAGAA 58.946 34.615 0.00 0.00 37.18 2.52
237 239 7.644157 GGTACTGAACATCAACAAAGAAGAAAC 59.356 37.037 0.00 0.00 0.00 2.78
238 240 7.156876 ACTGAACATCAACAAAGAAGAAACA 57.843 32.000 0.00 0.00 0.00 2.83
239 241 7.029563 ACTGAACATCAACAAAGAAGAAACAC 58.970 34.615 0.00 0.00 0.00 3.32
240 242 6.918626 TGAACATCAACAAAGAAGAAACACA 58.081 32.000 0.00 0.00 0.00 3.72
241 243 7.546358 TGAACATCAACAAAGAAGAAACACAT 58.454 30.769 0.00 0.00 0.00 3.21
242 244 7.701924 TGAACATCAACAAAGAAGAAACACATC 59.298 33.333 0.00 0.00 0.00 3.06
243 245 7.338800 ACATCAACAAAGAAGAAACACATCT 57.661 32.000 0.00 0.00 0.00 2.90
244 246 7.198390 ACATCAACAAAGAAGAAACACATCTG 58.802 34.615 0.00 0.00 0.00 2.90
245 247 6.135290 TCAACAAAGAAGAAACACATCTGG 57.865 37.500 0.00 0.00 0.00 3.86
379 382 3.448301 TGCCCCTTCATTTAGCAAGAATG 59.552 43.478 0.00 0.00 36.15 2.67
407 410 4.869297 CAGAATGAGCTCCTTTCTACTGTG 59.131 45.833 21.87 11.27 39.69 3.66
440 476 5.647589 TGTTGCACGTTAACCTATCTCTAG 58.352 41.667 9.29 0.00 0.00 2.43
451 487 5.231702 ACCTATCTCTAGTACTCCTTCCG 57.768 47.826 0.00 0.00 0.00 4.30
452 488 4.659835 ACCTATCTCTAGTACTCCTTCCGT 59.340 45.833 0.00 0.00 0.00 4.69
460 496 5.826737 TCTAGTACTCCTTCCGTTTCCATAG 59.173 44.000 0.00 0.00 0.00 2.23
474 510 7.980662 TCCGTTTCCATAGTTCGTATTGAAATA 59.019 33.333 0.00 0.00 40.98 1.40
504 543 6.954487 AGGGCTTATATTTAAAAACGGAGG 57.046 37.500 0.00 0.00 0.00 4.30
505 544 5.831525 AGGGCTTATATTTAAAAACGGAGGG 59.168 40.000 0.00 0.00 0.00 4.30
506 545 5.829391 GGGCTTATATTTAAAAACGGAGGGA 59.171 40.000 0.00 0.00 0.00 4.20
507 546 6.016527 GGGCTTATATTTAAAAACGGAGGGAG 60.017 42.308 0.00 0.00 0.00 4.30
508 547 6.544931 GGCTTATATTTAAAAACGGAGGGAGT 59.455 38.462 0.00 0.00 0.00 3.85
509 548 7.716560 GGCTTATATTTAAAAACGGAGGGAGTA 59.283 37.037 0.00 0.00 0.00 2.59
510 549 9.281371 GCTTATATTTAAAAACGGAGGGAGTAT 57.719 33.333 0.00 0.00 0.00 2.12
515 554 8.959705 ATTTAAAAACGGAGGGAGTATTAGAG 57.040 34.615 0.00 0.00 0.00 2.43
516 555 5.354842 AAAAACGGAGGGAGTATTAGAGG 57.645 43.478 0.00 0.00 0.00 3.69
517 556 3.967467 AACGGAGGGAGTATTAGAGGA 57.033 47.619 0.00 0.00 0.00 3.71
518 557 3.512219 ACGGAGGGAGTATTAGAGGAG 57.488 52.381 0.00 0.00 0.00 3.69
519 558 3.054576 ACGGAGGGAGTATTAGAGGAGA 58.945 50.000 0.00 0.00 0.00 3.71
520 559 3.073356 ACGGAGGGAGTATTAGAGGAGAG 59.927 52.174 0.00 0.00 0.00 3.20
521 560 3.073356 CGGAGGGAGTATTAGAGGAGAGT 59.927 52.174 0.00 0.00 0.00 3.24
522 561 4.286549 CGGAGGGAGTATTAGAGGAGAGTA 59.713 50.000 0.00 0.00 0.00 2.59
523 562 5.045432 CGGAGGGAGTATTAGAGGAGAGTAT 60.045 48.000 0.00 0.00 0.00 2.12
524 563 6.156602 CGGAGGGAGTATTAGAGGAGAGTATA 59.843 46.154 0.00 0.00 0.00 1.47
525 564 7.311171 CGGAGGGAGTATTAGAGGAGAGTATAA 60.311 44.444 0.00 0.00 0.00 0.98
526 565 8.050930 GGAGGGAGTATTAGAGGAGAGTATAAG 58.949 44.444 0.00 0.00 0.00 1.73
527 566 7.407729 AGGGAGTATTAGAGGAGAGTATAAGC 58.592 42.308 0.00 0.00 0.00 3.09
528 567 7.241039 AGGGAGTATTAGAGGAGAGTATAAGCT 59.759 40.741 0.00 0.00 0.00 3.74
545 584 1.533711 CTGGAATCCCGGAGCCAAT 59.466 57.895 0.73 0.00 41.53 3.16
546 585 0.536006 CTGGAATCCCGGAGCCAATC 60.536 60.000 0.73 0.00 41.53 2.67
547 586 1.278302 TGGAATCCCGGAGCCAATCA 61.278 55.000 0.73 0.00 34.29 2.57
548 587 0.111253 GGAATCCCGGAGCCAATCAT 59.889 55.000 0.73 0.00 0.00 2.45
549 588 1.479389 GGAATCCCGGAGCCAATCATT 60.479 52.381 0.73 0.00 0.00 2.57
550 589 2.224769 GGAATCCCGGAGCCAATCATTA 60.225 50.000 0.73 0.00 0.00 1.90
606 645 2.126071 CAAGCGACCCGACATCGT 60.126 61.111 0.00 0.00 41.68 3.73
618 657 3.682858 CCCGACATCGTCACATAAACTTT 59.317 43.478 0.00 0.00 37.74 2.66
645 684 8.166066 CACAAAAGTTTCGTGATATGTCGATAA 58.834 33.333 0.04 0.00 36.01 1.75
669 708 5.647658 ACATGACTCCATTGCGATTAAAGAA 59.352 36.000 0.00 0.00 0.00 2.52
678 717 9.119418 TCCATTGCGATTAAAGAAGATGATTTA 57.881 29.630 0.00 0.00 0.00 1.40
702 741 1.649664 CTCGGAGCAGATTCCAGTTG 58.350 55.000 0.00 0.00 37.05 3.16
717 756 1.594331 AGTTGGCGACTGGAGTTTTC 58.406 50.000 6.59 0.00 37.17 2.29
718 757 1.134220 AGTTGGCGACTGGAGTTTTCA 60.134 47.619 6.59 0.00 37.17 2.69
719 758 1.880027 GTTGGCGACTGGAGTTTTCAT 59.120 47.619 0.00 0.00 0.00 2.57
720 759 1.808411 TGGCGACTGGAGTTTTCATC 58.192 50.000 0.00 0.00 0.00 2.92
723 762 1.671850 GCGACTGGAGTTTTCATCCGA 60.672 52.381 0.00 0.00 39.91 4.55
724 763 2.263077 CGACTGGAGTTTTCATCCGAG 58.737 52.381 0.00 0.00 39.91 4.63
725 764 2.622436 GACTGGAGTTTTCATCCGAGG 58.378 52.381 0.00 0.00 39.91 4.63
726 765 1.339151 ACTGGAGTTTTCATCCGAGGC 60.339 52.381 0.00 0.00 39.91 4.70
733 772 0.881118 TTTCATCCGAGGCTTGTTGC 59.119 50.000 0.12 0.00 41.94 4.17
736 775 0.169672 CATCCGAGGCTTGTTGCTTG 59.830 55.000 0.12 0.00 42.39 4.01
738 777 1.165907 TCCGAGGCTTGTTGCTTGTG 61.166 55.000 0.12 0.00 42.39 3.33
739 778 1.447317 CCGAGGCTTGTTGCTTGTGT 61.447 55.000 0.12 0.00 42.39 3.72
740 779 0.040958 CGAGGCTTGTTGCTTGTGTC 60.041 55.000 0.00 0.00 42.39 3.67
763 858 8.138712 TGTCAAAATCAACCCAAATTGTACTAC 58.861 33.333 0.00 0.00 0.00 2.73
814 909 7.500629 AAAAAGCCAGGATCCTCAAATTATT 57.499 32.000 12.69 0.00 0.00 1.40
815 910 8.608185 AAAAAGCCAGGATCCTCAAATTATTA 57.392 30.769 12.69 0.00 0.00 0.98
961 1067 9.173021 CTGCACTATTCTATGCTATCTACTACT 57.827 37.037 0.00 0.00 42.55 2.57
962 1068 9.168451 TGCACTATTCTATGCTATCTACTACTC 57.832 37.037 0.00 0.00 42.55 2.59
967 1073 7.809226 TTCTATGCTATCTACTACTCGTACG 57.191 40.000 9.53 9.53 0.00 3.67
977 1088 7.916128 TCTACTACTCGTACGTGTATAGAAC 57.084 40.000 25.26 0.00 0.00 3.01
1248 1374 2.654912 CGACGGTCGGTGTTGCTTC 61.655 63.158 22.18 0.00 36.00 3.86
1270 1396 5.261216 TCCTTTTTCTTCTTGGACACTTGT 58.739 37.500 0.00 0.00 0.00 3.16
1272 1398 6.887545 TCCTTTTTCTTCTTGGACACTTGTTA 59.112 34.615 0.00 0.00 0.00 2.41
1298 1425 2.529680 CGATTGTTACTTCGCGTCGTTC 60.530 50.000 5.77 2.78 0.00 3.95
1337 1464 2.812619 CGGGGGAGAGATTGGAGCC 61.813 68.421 0.00 0.00 0.00 4.70
1378 1505 7.344095 TCCTGGAAAACATACTAGTACTAGC 57.656 40.000 26.54 9.94 36.66 3.42
1526 1653 0.459585 TTCGGCTTGCTCGTCATACC 60.460 55.000 0.00 0.00 0.00 2.73
1730 1984 7.414429 GCTTTTGCTTGTCAAGGAAAGAATTTT 60.414 33.333 25.27 0.00 46.99 1.82
1802 2057 6.612247 TGCCTAATTATTGGTGTTGATACG 57.388 37.500 0.00 0.00 0.00 3.06
1807 2062 8.134895 CCTAATTATTGGTGTTGATACGCAAAT 58.865 33.333 0.00 0.00 40.59 2.32
1842 2097 1.001282 GGGTGGGTGGGGTGTAAATA 58.999 55.000 0.00 0.00 0.00 1.40
1925 2180 3.971702 GCTGCCCTTGTCCTGGGT 61.972 66.667 0.00 0.00 46.22 4.51
1926 2181 2.846532 CTGCCCTTGTCCTGGGTT 59.153 61.111 0.00 0.00 46.22 4.11
1927 2182 1.153756 CTGCCCTTGTCCTGGGTTT 59.846 57.895 0.00 0.00 46.22 3.27
2439 2697 7.013942 GGTTGTTAAACATTGAGAAGGTACCTT 59.986 37.037 27.43 27.43 38.10 3.50
2475 2733 7.093552 CCCAATTAAGTGTCATCATTAACCCAA 60.094 37.037 1.80 0.00 0.00 4.12
2476 2734 7.759433 CCAATTAAGTGTCATCATTAACCCAAC 59.241 37.037 1.80 0.00 0.00 3.77
2524 2782 9.281371 GTGATGAGATTCAAATGATAATCCAGA 57.719 33.333 0.00 0.00 33.44 3.86
2525 2783 9.503399 TGATGAGATTCAAATGATAATCCAGAG 57.497 33.333 0.00 0.00 33.44 3.35
2599 2857 2.434336 TGTACACTCTGCAGAGGTTTGT 59.566 45.455 39.42 34.28 46.13 2.83
2884 3142 1.662122 GTGGCGGTCCTTATACAAACG 59.338 52.381 0.00 0.00 0.00 3.60
2918 3176 0.549950 CTCCAGGTGCCTCAATCCAT 59.450 55.000 0.00 0.00 0.00 3.41
3131 3391 8.803397 AACCCACAGTTTAATTAGATCCTAAC 57.197 34.615 0.00 0.00 33.89 2.34
3155 3415 7.062322 ACCATGCAATGTTTGAGGAATAGATA 58.938 34.615 0.00 0.00 44.81 1.98
3165 3425 9.851686 TGTTTGAGGAATAGATATAATGCAGTT 57.148 29.630 0.00 0.00 0.00 3.16
3193 3453 7.941795 TTTTTAAACATTCCGCGGAAAATAA 57.058 28.000 41.31 30.18 37.69 1.40
3194 3454 8.535690 TTTTTAAACATTCCGCGGAAAATAAT 57.464 26.923 41.31 27.34 37.69 1.28
3195 3455 8.535690 TTTTAAACATTCCGCGGAAAATAATT 57.464 26.923 41.31 29.89 37.69 1.40
3196 3456 7.743520 TTAAACATTCCGCGGAAAATAATTC 57.256 32.000 41.31 0.00 37.69 2.17
3197 3457 3.947626 ACATTCCGCGGAAAATAATTCG 58.052 40.909 41.31 23.24 37.69 3.34
3198 3458 3.375922 ACATTCCGCGGAAAATAATTCGT 59.624 39.130 41.31 23.81 37.69 3.85
3199 3459 4.571580 ACATTCCGCGGAAAATAATTCGTA 59.428 37.500 41.31 17.44 37.69 3.43
3200 3460 4.782252 TTCCGCGGAAAATAATTCGTAG 57.218 40.909 37.13 0.00 0.00 3.51
3201 3461 4.044336 TCCGCGGAAAATAATTCGTAGA 57.956 40.909 28.99 0.00 0.00 2.59
3202 3462 4.431809 TCCGCGGAAAATAATTCGTAGAA 58.568 39.130 28.99 0.00 45.90 2.10
3203 3463 4.869297 TCCGCGGAAAATAATTCGTAGAAA 59.131 37.500 28.99 0.00 45.90 2.52
3204 3464 5.350914 TCCGCGGAAAATAATTCGTAGAAAA 59.649 36.000 28.99 0.00 45.90 2.29
3205 3465 6.022821 CCGCGGAAAATAATTCGTAGAAAAA 58.977 36.000 24.07 0.00 45.90 1.94
3206 3466 6.689669 CCGCGGAAAATAATTCGTAGAAAAAT 59.310 34.615 24.07 0.00 45.90 1.82
3207 3467 7.851963 CCGCGGAAAATAATTCGTAGAAAAATA 59.148 33.333 24.07 0.00 45.90 1.40
3208 3468 9.212687 CGCGGAAAATAATTCGTAGAAAAATAA 57.787 29.630 0.00 0.00 45.90 1.40
3245 3505 8.740123 AAAAAGATAAAACAAATTTTCCCCGT 57.260 26.923 0.00 0.00 38.91 5.28
3246 3506 7.956420 AAAGATAAAACAAATTTTCCCCGTC 57.044 32.000 0.00 0.00 38.91 4.79
3247 3507 6.911250 AGATAAAACAAATTTTCCCCGTCT 57.089 33.333 0.00 0.00 38.91 4.18
3248 3508 8.411991 AAGATAAAACAAATTTTCCCCGTCTA 57.588 30.769 0.00 0.00 38.91 2.59
3249 3509 8.051901 AGATAAAACAAATTTTCCCCGTCTAG 57.948 34.615 0.00 0.00 38.91 2.43
3250 3510 7.668469 AGATAAAACAAATTTTCCCCGTCTAGT 59.332 33.333 0.00 0.00 38.91 2.57
3251 3511 6.474140 AAAACAAATTTTCCCCGTCTAGTT 57.526 33.333 0.00 0.00 32.29 2.24
3252 3512 7.585579 AAAACAAATTTTCCCCGTCTAGTTA 57.414 32.000 0.00 0.00 32.29 2.24
3253 3513 6.812879 AACAAATTTTCCCCGTCTAGTTAG 57.187 37.500 0.00 0.00 0.00 2.34
3254 3514 6.117975 ACAAATTTTCCCCGTCTAGTTAGA 57.882 37.500 0.00 0.00 0.00 2.10
3255 3515 6.536447 ACAAATTTTCCCCGTCTAGTTAGAA 58.464 36.000 0.00 0.00 33.47 2.10
3256 3516 6.999871 ACAAATTTTCCCCGTCTAGTTAGAAA 59.000 34.615 0.00 0.00 33.47 2.52
3257 3517 7.503230 ACAAATTTTCCCCGTCTAGTTAGAAAA 59.497 33.333 0.00 0.00 37.54 2.29
3258 3518 8.520351 CAAATTTTCCCCGTCTAGTTAGAAAAT 58.480 33.333 0.00 0.00 42.60 1.82
3259 3519 7.860918 ATTTTCCCCGTCTAGTTAGAAAATC 57.139 36.000 0.00 0.00 38.77 2.17
3260 3520 6.616237 TTTCCCCGTCTAGTTAGAAAATCT 57.384 37.500 0.00 0.00 33.47 2.40
3261 3521 7.722949 TTTCCCCGTCTAGTTAGAAAATCTA 57.277 36.000 0.00 0.00 33.47 1.98
3262 3522 6.956202 TCCCCGTCTAGTTAGAAAATCTAG 57.044 41.667 0.00 0.00 33.47 2.43
3263 3523 6.666678 TCCCCGTCTAGTTAGAAAATCTAGA 58.333 40.000 0.00 0.00 38.12 2.43
3264 3524 7.121382 TCCCCGTCTAGTTAGAAAATCTAGAA 58.879 38.462 0.00 0.00 40.79 2.10
3265 3525 7.783596 TCCCCGTCTAGTTAGAAAATCTAGAAT 59.216 37.037 0.00 0.00 40.79 2.40
3266 3526 9.075678 CCCCGTCTAGTTAGAAAATCTAGAATA 57.924 37.037 0.00 0.00 40.79 1.75
3275 3535 9.886132 GTTAGAAAATCTAGAATAGGGTGAACA 57.114 33.333 0.00 0.00 39.78 3.18
3278 3538 9.981460 AGAAAATCTAGAATAGGGTGAACATTT 57.019 29.630 0.00 0.00 39.78 2.32
3359 3619 9.658799 TTGCAAATAAAATCCGAATAAATTCCA 57.341 25.926 0.00 0.00 33.28 3.53
3360 3620 9.658799 TGCAAATAAAATCCGAATAAATTCCAA 57.341 25.926 0.00 0.00 33.28 3.53
3388 3648 7.839680 ATGATTTTAACACTTTTCCTCCAGT 57.160 32.000 0.00 0.00 0.00 4.00
3389 3649 8.934023 ATGATTTTAACACTTTTCCTCCAGTA 57.066 30.769 0.00 0.00 0.00 2.74
3390 3650 8.934023 TGATTTTAACACTTTTCCTCCAGTAT 57.066 30.769 0.00 0.00 0.00 2.12
3391 3651 9.362151 TGATTTTAACACTTTTCCTCCAGTATT 57.638 29.630 0.00 0.00 0.00 1.89
3394 3654 8.754991 TTTAACACTTTTCCTCCAGTATTTCA 57.245 30.769 0.00 0.00 0.00 2.69
3395 3655 8.934023 TTAACACTTTTCCTCCAGTATTTCAT 57.066 30.769 0.00 0.00 0.00 2.57
3396 3656 7.839680 AACACTTTTCCTCCAGTATTTCATT 57.160 32.000 0.00 0.00 0.00 2.57
3397 3657 7.839680 ACACTTTTCCTCCAGTATTTCATTT 57.160 32.000 0.00 0.00 0.00 2.32
3398 3658 7.661040 ACACTTTTCCTCCAGTATTTCATTTG 58.339 34.615 0.00 0.00 0.00 2.32
3399 3659 7.287696 ACACTTTTCCTCCAGTATTTCATTTGT 59.712 33.333 0.00 0.00 0.00 2.83
3400 3660 8.143835 CACTTTTCCTCCAGTATTTCATTTGTT 58.856 33.333 0.00 0.00 0.00 2.83
3401 3661 8.704668 ACTTTTCCTCCAGTATTTCATTTGTTT 58.295 29.630 0.00 0.00 0.00 2.83
3402 3662 9.546428 CTTTTCCTCCAGTATTTCATTTGTTTT 57.454 29.630 0.00 0.00 0.00 2.43
3403 3663 8.885494 TTTCCTCCAGTATTTCATTTGTTTTG 57.115 30.769 0.00 0.00 0.00 2.44
3404 3664 6.991938 TCCTCCAGTATTTCATTTGTTTTGG 58.008 36.000 0.00 0.00 0.00 3.28
3405 3665 6.780031 TCCTCCAGTATTTCATTTGTTTTGGA 59.220 34.615 0.00 0.00 0.00 3.53
3406 3666 7.039784 TCCTCCAGTATTTCATTTGTTTTGGAG 60.040 37.037 9.20 9.20 45.44 3.86
3407 3667 7.831691 TCCAGTATTTCATTTGTTTTGGAGA 57.168 32.000 0.00 0.00 0.00 3.71
3408 3668 8.243961 TCCAGTATTTCATTTGTTTTGGAGAA 57.756 30.769 0.00 0.00 0.00 2.87
3409 3669 8.359642 TCCAGTATTTCATTTGTTTTGGAGAAG 58.640 33.333 0.00 0.00 0.00 2.85
3410 3670 8.143835 CCAGTATTTCATTTGTTTTGGAGAAGT 58.856 33.333 0.00 0.00 0.00 3.01
3411 3671 9.185192 CAGTATTTCATTTGTTTTGGAGAAGTC 57.815 33.333 0.00 0.00 0.00 3.01
3412 3672 8.912988 AGTATTTCATTTGTTTTGGAGAAGTCA 58.087 29.630 0.00 0.00 0.00 3.41
3413 3673 9.696917 GTATTTCATTTGTTTTGGAGAAGTCAT 57.303 29.630 0.00 0.00 0.00 3.06
3421 3681 9.965824 TTTGTTTTGGAGAAGTCATATTTTCTC 57.034 29.630 10.73 10.73 45.40 2.87
3427 3687 6.493189 GAGAAGTCATATTTTCTCCCCTCT 57.507 41.667 8.98 0.00 42.10 3.69
3428 3688 6.894682 GAGAAGTCATATTTTCTCCCCTCTT 58.105 40.000 8.98 0.00 42.10 2.85
3429 3689 7.277405 AGAAGTCATATTTTCTCCCCTCTTT 57.723 36.000 0.00 0.00 0.00 2.52
3430 3690 7.703755 AGAAGTCATATTTTCTCCCCTCTTTT 58.296 34.615 0.00 0.00 0.00 2.27
3431 3691 8.836735 AGAAGTCATATTTTCTCCCCTCTTTTA 58.163 33.333 0.00 0.00 0.00 1.52
3432 3692 9.634021 GAAGTCATATTTTCTCCCCTCTTTTAT 57.366 33.333 0.00 0.00 0.00 1.40
3433 3693 9.997172 AAGTCATATTTTCTCCCCTCTTTTATT 57.003 29.630 0.00 0.00 0.00 1.40
3434 3694 9.997172 AGTCATATTTTCTCCCCTCTTTTATTT 57.003 29.630 0.00 0.00 0.00 1.40
3474 3734 9.917129 TTTTCCGGAGAGAAAATAATTAAAACC 57.083 29.630 3.34 0.00 40.04 3.27
3475 3735 8.638629 TTCCGGAGAGAAAATAATTAAAACCA 57.361 30.769 3.34 0.00 0.00 3.67
3476 3736 8.638629 TCCGGAGAGAAAATAATTAAAACCAA 57.361 30.769 0.00 0.00 0.00 3.67
3477 3737 9.080097 TCCGGAGAGAAAATAATTAAAACCAAA 57.920 29.630 0.00 0.00 0.00 3.28
3478 3738 9.699703 CCGGAGAGAAAATAATTAAAACCAAAA 57.300 29.630 0.00 0.00 0.00 2.44
3530 3790 9.618890 TCAAATATGAGAATTCGAGAAAATCCT 57.381 29.630 0.00 0.00 0.00 3.24
3531 3791 9.875675 CAAATATGAGAATTCGAGAAAATCCTC 57.124 33.333 0.00 0.00 0.00 3.71
3532 3792 9.618890 AAATATGAGAATTCGAGAAAATCCTCA 57.381 29.630 0.00 0.00 32.86 3.86
3533 3793 9.618890 AATATGAGAATTCGAGAAAATCCTCAA 57.381 29.630 0.00 0.00 32.86 3.02
3534 3794 6.727824 TGAGAATTCGAGAAAATCCTCAAC 57.272 37.500 0.00 0.00 32.86 3.18
3535 3795 6.467677 TGAGAATTCGAGAAAATCCTCAACT 58.532 36.000 0.00 0.00 32.86 3.16
3536 3796 6.591834 TGAGAATTCGAGAAAATCCTCAACTC 59.408 38.462 0.00 0.00 32.86 3.01
3537 3797 6.706295 AGAATTCGAGAAAATCCTCAACTCT 58.294 36.000 0.00 0.00 32.86 3.24
3538 3798 6.816140 AGAATTCGAGAAAATCCTCAACTCTC 59.184 38.462 0.00 0.00 32.86 3.20
3539 3799 5.730296 TTCGAGAAAATCCTCAACTCTCT 57.270 39.130 0.00 0.00 32.13 3.10
3540 3800 5.317733 TCGAGAAAATCCTCAACTCTCTC 57.682 43.478 0.00 0.00 32.13 3.20
3541 3801 4.158764 TCGAGAAAATCCTCAACTCTCTCC 59.841 45.833 0.00 0.00 32.13 3.71
3542 3802 4.429108 GAGAAAATCCTCAACTCTCTCCG 58.571 47.826 0.00 0.00 33.50 4.63
3543 3803 4.090090 AGAAAATCCTCAACTCTCTCCGA 58.910 43.478 0.00 0.00 0.00 4.55
3544 3804 4.159506 AGAAAATCCTCAACTCTCTCCGAG 59.840 45.833 0.00 0.00 45.56 4.63
3545 3805 2.065899 ATCCTCAACTCTCTCCGAGG 57.934 55.000 0.00 0.00 44.33 4.63
3546 3806 0.033991 TCCTCAACTCTCTCCGAGGG 60.034 60.000 4.56 0.00 44.37 4.30
3547 3807 0.323908 CCTCAACTCTCTCCGAGGGT 60.324 60.000 0.00 0.00 46.42 4.34
3548 3808 1.099689 CTCAACTCTCTCCGAGGGTC 58.900 60.000 0.00 0.00 43.29 4.46
3549 3809 0.323542 TCAACTCTCTCCGAGGGTCC 60.324 60.000 0.00 0.00 43.29 4.46
3550 3810 0.323908 CAACTCTCTCCGAGGGTCCT 60.324 60.000 0.00 0.00 43.29 3.85
3551 3811 0.410270 AACTCTCTCCGAGGGTCCTT 59.590 55.000 0.00 0.00 43.29 3.36
3552 3812 0.323908 ACTCTCTCCGAGGGTCCTTG 60.324 60.000 0.00 0.00 39.45 3.61
3553 3813 0.033991 CTCTCTCCGAGGGTCCTTGA 60.034 60.000 5.84 0.00 36.06 3.02
3554 3814 0.033991 TCTCTCCGAGGGTCCTTGAG 60.034 60.000 5.84 8.15 0.00 3.02
3555 3815 0.323908 CTCTCCGAGGGTCCTTGAGT 60.324 60.000 5.84 0.00 31.48 3.41
3556 3816 0.114560 TCTCCGAGGGTCCTTGAGTT 59.885 55.000 5.84 0.00 31.48 3.01
3557 3817 0.247736 CTCCGAGGGTCCTTGAGTTG 59.752 60.000 5.84 0.00 0.00 3.16
3558 3818 1.376037 CCGAGGGTCCTTGAGTTGC 60.376 63.158 5.84 0.00 0.00 4.17
3559 3819 1.674057 CGAGGGTCCTTGAGTTGCT 59.326 57.895 0.00 0.00 0.00 3.91
3560 3820 0.035458 CGAGGGTCCTTGAGTTGCTT 59.965 55.000 0.00 0.00 0.00 3.91
3561 3821 1.275291 CGAGGGTCCTTGAGTTGCTTA 59.725 52.381 0.00 0.00 0.00 3.09
3562 3822 2.675317 CGAGGGTCCTTGAGTTGCTTAG 60.675 54.545 0.00 0.00 0.00 2.18
3563 3823 1.630878 AGGGTCCTTGAGTTGCTTAGG 59.369 52.381 0.00 0.00 0.00 2.69
3564 3824 1.628846 GGGTCCTTGAGTTGCTTAGGA 59.371 52.381 0.00 0.00 34.50 2.94
3565 3825 2.239907 GGGTCCTTGAGTTGCTTAGGAT 59.760 50.000 0.00 0.00 38.92 3.24
3566 3826 3.308473 GGGTCCTTGAGTTGCTTAGGATT 60.308 47.826 0.00 0.00 38.92 3.01
3567 3827 4.336280 GGTCCTTGAGTTGCTTAGGATTT 58.664 43.478 0.00 0.00 38.92 2.17
3568 3828 5.497474 GGTCCTTGAGTTGCTTAGGATTTA 58.503 41.667 0.00 0.00 38.92 1.40
3569 3829 6.122964 GGTCCTTGAGTTGCTTAGGATTTAT 58.877 40.000 0.00 0.00 38.92 1.40
3570 3830 6.261158 GGTCCTTGAGTTGCTTAGGATTTATC 59.739 42.308 0.00 0.00 38.92 1.75
3571 3831 6.018669 GTCCTTGAGTTGCTTAGGATTTATCG 60.019 42.308 0.00 0.00 38.92 2.92
3572 3832 6.049149 CCTTGAGTTGCTTAGGATTTATCGA 58.951 40.000 0.00 0.00 0.00 3.59
3573 3833 6.201806 CCTTGAGTTGCTTAGGATTTATCGAG 59.798 42.308 0.00 0.00 0.00 4.04
3574 3834 5.601662 TGAGTTGCTTAGGATTTATCGAGG 58.398 41.667 0.00 0.00 0.00 4.63
3575 3835 5.362717 TGAGTTGCTTAGGATTTATCGAGGA 59.637 40.000 0.00 0.00 0.00 3.71
3576 3836 6.042093 TGAGTTGCTTAGGATTTATCGAGGAT 59.958 38.462 0.00 0.00 0.00 3.24
3577 3837 6.831976 AGTTGCTTAGGATTTATCGAGGATT 58.168 36.000 0.00 0.00 0.00 3.01
3578 3838 7.283329 AGTTGCTTAGGATTTATCGAGGATTT 58.717 34.615 0.00 0.00 0.00 2.17
3579 3839 7.227512 AGTTGCTTAGGATTTATCGAGGATTTG 59.772 37.037 0.00 0.00 0.00 2.32
3580 3840 6.591935 TGCTTAGGATTTATCGAGGATTTGT 58.408 36.000 0.00 0.00 0.00 2.83
3581 3841 6.706270 TGCTTAGGATTTATCGAGGATTTGTC 59.294 38.462 0.00 0.00 0.00 3.18
3582 3842 6.706270 GCTTAGGATTTATCGAGGATTTGTCA 59.294 38.462 0.00 0.00 0.00 3.58
3583 3843 7.226720 GCTTAGGATTTATCGAGGATTTGTCAA 59.773 37.037 0.00 0.00 0.00 3.18
3584 3844 9.109393 CTTAGGATTTATCGAGGATTTGTCAAA 57.891 33.333 0.00 0.00 0.00 2.69
3585 3845 7.938140 AGGATTTATCGAGGATTTGTCAAAA 57.062 32.000 1.31 0.00 0.00 2.44
3586 3846 8.525290 AGGATTTATCGAGGATTTGTCAAAAT 57.475 30.769 1.31 0.00 38.74 1.82
3587 3847 8.408601 AGGATTTATCGAGGATTTGTCAAAATG 58.591 33.333 1.31 0.00 36.10 2.32
3588 3848 7.168135 GGATTTATCGAGGATTTGTCAAAATGC 59.832 37.037 1.31 0.00 42.66 3.56
3589 3849 6.507958 TTATCGAGGATTTGTCAAAATGCA 57.492 33.333 1.31 0.00 44.23 3.96
3590 3850 4.844998 TCGAGGATTTGTCAAAATGCAA 57.155 36.364 1.31 0.00 44.23 4.08
3591 3851 5.389859 TCGAGGATTTGTCAAAATGCAAT 57.610 34.783 1.31 0.00 44.23 3.56
3592 3852 6.507958 TCGAGGATTTGTCAAAATGCAATA 57.492 33.333 1.31 0.00 44.23 1.90
3593 3853 6.918626 TCGAGGATTTGTCAAAATGCAATAA 58.081 32.000 1.31 0.00 44.23 1.40
3594 3854 7.374272 TCGAGGATTTGTCAAAATGCAATAAA 58.626 30.769 1.31 0.00 44.23 1.40
3595 3855 7.869937 TCGAGGATTTGTCAAAATGCAATAAAA 59.130 29.630 1.31 0.00 44.23 1.52
3596 3856 8.658609 CGAGGATTTGTCAAAATGCAATAAAAT 58.341 29.630 1.31 0.00 44.23 1.82
3694 3954 7.655521 AGTATAATGCAGACTAGTGGTACAA 57.344 36.000 0.00 0.00 44.16 2.41
3784 4044 1.135603 CAGGACATTGTTGATGCACCG 60.136 52.381 0.00 0.00 39.47 4.94
4121 4381 1.068352 ACTTTGGGCCCAGAGAAGGT 61.068 55.000 41.21 24.10 33.12 3.50
4345 4605 3.467374 TGGTTGGATTGGCTTTGAAAC 57.533 42.857 0.00 0.00 0.00 2.78
4351 4611 2.029020 GGATTGGCTTTGAAACAGGGAC 60.029 50.000 0.00 0.00 0.00 4.46
4353 4613 2.380064 TGGCTTTGAAACAGGGACAT 57.620 45.000 0.00 0.00 0.00 3.06
4438 4698 3.554934 CAAGCTAAGGGTATGGATTGCA 58.445 45.455 0.00 0.00 0.00 4.08
4462 4722 1.066858 GTGGAATCTGGAGAAGCACGA 60.067 52.381 0.00 0.00 0.00 4.35
4623 4883 4.884247 ACTCTACTTTGTTAGTCTGCACC 58.116 43.478 0.00 0.00 38.33 5.01
4836 5101 3.747579 CCAATGGGGCCTCCTGCT 61.748 66.667 0.00 0.00 40.92 4.24
4837 5102 2.441532 CAATGGGGCCTCCTGCTG 60.442 66.667 0.00 0.00 40.92 4.41
4838 5103 2.943265 AATGGGGCCTCCTGCTGT 60.943 61.111 0.00 0.00 40.92 4.40
5106 5371 2.048597 TACGCAGAACAGCACCCG 60.049 61.111 0.00 0.00 0.00 5.28
5416 5682 5.405935 AAAATAGTGGTCAAAGGCAATCC 57.594 39.130 0.00 0.00 0.00 3.01
5421 5687 2.827921 GTGGTCAAAGGCAATCCTGAAT 59.172 45.455 0.00 0.00 43.40 2.57
5507 5773 5.882557 AGTGTGCTTATGTCTTATTCCTTGG 59.117 40.000 0.00 0.00 0.00 3.61
5644 5910 4.335400 AAATGGCGAACAACCAGAAATT 57.665 36.364 0.00 0.00 41.46 1.82
5801 6067 9.407380 TGCTAGCAGGAAATTTCAAATATAGAA 57.593 29.630 14.93 6.84 0.00 2.10
5951 6218 6.849085 ACTCTCTCTCTTGCTTTCATTCTA 57.151 37.500 0.00 0.00 0.00 2.10
6070 6337 3.654414 GACAAGAAAGATGTCAGTCCGT 58.346 45.455 2.01 0.00 45.13 4.69
6117 6384 3.987745 AGATGTGTACTCTGATCCTGGT 58.012 45.455 0.00 0.00 0.00 4.00
6120 6387 2.492088 TGTGTACTCTGATCCTGGTTCG 59.508 50.000 0.00 0.00 0.00 3.95
6365 6673 8.145122 CGCTCTTATATTTCTTTAGAGGGAGTT 58.855 37.037 0.00 0.00 44.18 3.01
6416 6724 7.752686 TGCCTTTATTTTTGTTTTTGCAGAAAC 59.247 29.630 22.37 22.37 39.41 2.78
6602 6910 0.673985 GGCCGGAAAAGAAGCAAGTT 59.326 50.000 5.05 0.00 0.00 2.66
7008 7317 7.725251 AGTTAAAATTTGATGCACTTCTTCCA 58.275 30.769 0.00 0.00 0.00 3.53
7210 7519 3.317711 CACACTTGTGCCATGGAACTAAA 59.682 43.478 23.90 9.80 39.39 1.85
7314 7623 1.482593 AGAGGGGTGAGCATTTCGTAG 59.517 52.381 0.00 0.00 0.00 3.51
7497 7806 0.169009 GCTGTGGAATTGCTCGTTCC 59.831 55.000 0.00 7.97 44.32 3.62
7852 8189 4.830600 TCCCACCTCTTTTGTTTGAATACC 59.169 41.667 0.00 0.00 0.00 2.73
7925 8262 5.452078 TGTTTTTCATGTGGAATCTCACC 57.548 39.130 0.00 0.00 36.87 4.02
7931 8268 4.096681 TCATGTGGAATCTCACCAGTAGT 58.903 43.478 0.00 0.00 38.14 2.73
7932 8269 4.532126 TCATGTGGAATCTCACCAGTAGTT 59.468 41.667 0.00 0.00 38.14 2.24
8377 8714 2.954753 GCACGTGCTTTGGGAGTCG 61.955 63.158 32.55 0.00 38.21 4.18
8556 8893 4.695455 TCTGTGGTAACTTCTTATTGCTGC 59.305 41.667 0.00 0.00 37.61 5.25
8557 8894 4.651778 TGTGGTAACTTCTTATTGCTGCT 58.348 39.130 0.00 0.00 37.61 4.24
8594 8931 6.862209 TGCTAAAATCCATTTCGTTGCTTAT 58.138 32.000 0.00 0.00 32.27 1.73
8595 8932 7.319646 TGCTAAAATCCATTTCGTTGCTTATT 58.680 30.769 0.00 0.00 32.27 1.40
8596 8933 7.275341 TGCTAAAATCCATTTCGTTGCTTATTG 59.725 33.333 0.00 0.00 32.27 1.90
8597 8934 7.275560 GCTAAAATCCATTTCGTTGCTTATTGT 59.724 33.333 0.00 0.00 32.27 2.71
8598 8935 6.949578 AAATCCATTTCGTTGCTTATTGTG 57.050 33.333 0.00 0.00 0.00 3.33
8599 8936 5.895636 ATCCATTTCGTTGCTTATTGTGA 57.104 34.783 0.00 0.00 0.00 3.58
8600 8937 5.041951 TCCATTTCGTTGCTTATTGTGAC 57.958 39.130 0.00 0.00 0.00 3.67
8601 8938 4.517075 TCCATTTCGTTGCTTATTGTGACA 59.483 37.500 0.00 0.00 0.00 3.58
8602 8939 4.853196 CCATTTCGTTGCTTATTGTGACAG 59.147 41.667 0.00 0.00 0.00 3.51
8603 8940 5.334802 CCATTTCGTTGCTTATTGTGACAGA 60.335 40.000 0.00 0.00 0.00 3.41
8604 8941 4.725556 TTCGTTGCTTATTGTGACAGAC 57.274 40.909 0.00 0.00 0.00 3.51
8605 8942 3.723260 TCGTTGCTTATTGTGACAGACA 58.277 40.909 0.00 0.00 0.00 3.41
8623 8960 2.299013 GACACACACCACTCACCATCTA 59.701 50.000 0.00 0.00 0.00 1.98
8648 8985 3.242739 CCATTTCCTTATCGACGCCAAAG 60.243 47.826 0.00 0.00 0.00 2.77
8679 9016 8.939201 TTAAACAAATGAATTTCAACAGCTCA 57.061 26.923 2.68 0.00 0.00 4.26
8729 9070 3.149196 CTCACTTAGTTGGGTGTGCATT 58.851 45.455 0.00 0.00 35.26 3.56
8730 9071 3.561143 TCACTTAGTTGGGTGTGCATTT 58.439 40.909 0.00 0.00 35.26 2.32
8731 9072 3.317711 TCACTTAGTTGGGTGTGCATTTG 59.682 43.478 0.00 0.00 35.26 2.32
8732 9073 3.317711 CACTTAGTTGGGTGTGCATTTGA 59.682 43.478 0.00 0.00 0.00 2.69
8757 9098 5.673337 CATGTTAACATGTAATCCCTCCG 57.327 43.478 31.75 9.45 46.40 4.63
8758 9099 4.829872 TGTTAACATGTAATCCCTCCGT 57.170 40.909 3.59 0.00 0.00 4.69
8759 9100 5.168647 TGTTAACATGTAATCCCTCCGTT 57.831 39.130 3.59 0.00 0.00 4.44
8760 9101 5.180271 TGTTAACATGTAATCCCTCCGTTC 58.820 41.667 3.59 0.00 0.00 3.95
8761 9102 3.277142 AACATGTAATCCCTCCGTTCC 57.723 47.619 0.00 0.00 0.00 3.62
8762 9103 2.193127 ACATGTAATCCCTCCGTTCCA 58.807 47.619 0.00 0.00 0.00 3.53
8763 9104 2.574369 ACATGTAATCCCTCCGTTCCAA 59.426 45.455 0.00 0.00 0.00 3.53
8764 9105 3.009695 ACATGTAATCCCTCCGTTCCAAA 59.990 43.478 0.00 0.00 0.00 3.28
8765 9106 3.791953 TGTAATCCCTCCGTTCCAAAA 57.208 42.857 0.00 0.00 0.00 2.44
8766 9107 4.310022 TGTAATCCCTCCGTTCCAAAAT 57.690 40.909 0.00 0.00 0.00 1.82
8767 9108 5.438698 TGTAATCCCTCCGTTCCAAAATA 57.561 39.130 0.00 0.00 0.00 1.40
8768 9109 5.187687 TGTAATCCCTCCGTTCCAAAATAC 58.812 41.667 0.00 0.00 0.00 1.89
8769 9110 4.586306 AATCCCTCCGTTCCAAAATACT 57.414 40.909 0.00 0.00 0.00 2.12
8770 9111 4.586306 ATCCCTCCGTTCCAAAATACTT 57.414 40.909 0.00 0.00 0.00 2.24
8771 9112 3.681593 TCCCTCCGTTCCAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
8772 9113 3.073356 TCCCTCCGTTCCAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
8773 9114 3.439129 CCCTCCGTTCCAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
8774 9115 3.124636 CCTCCGTTCCAAAATACTTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
8775 9116 3.731089 TCCGTTCCAAAATACTTGTCGT 58.269 40.909 0.00 0.00 0.00 4.34
8776 9117 3.495377 TCCGTTCCAAAATACTTGTCGTG 59.505 43.478 0.00 0.00 0.00 4.35
8777 9118 3.364565 CCGTTCCAAAATACTTGTCGTGG 60.365 47.826 0.00 0.00 0.00 4.94
8778 9119 3.249080 CGTTCCAAAATACTTGTCGTGGT 59.751 43.478 0.00 0.00 0.00 4.16
8779 9120 4.260866 CGTTCCAAAATACTTGTCGTGGTT 60.261 41.667 0.00 0.00 0.00 3.67
8780 9121 5.584442 GTTCCAAAATACTTGTCGTGGTTT 58.416 37.500 0.00 0.00 0.00 3.27
8781 9122 5.838531 TCCAAAATACTTGTCGTGGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
8782 9123 6.939132 TCCAAAATACTTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
8783 9124 6.961576 TCCAAAATACTTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 0.00 1.85
8784 9125 6.016943 TCCAAAATACTTGTCGTGGTTTTAGG 60.017 38.462 0.00 0.00 0.00 2.69
8785 9126 6.238814 CCAAAATACTTGTCGTGGTTTTAGGT 60.239 38.462 0.00 0.00 0.00 3.08
8786 9127 6.549912 AAATACTTGTCGTGGTTTTAGGTC 57.450 37.500 0.00 0.00 0.00 3.85
8787 9128 3.547054 ACTTGTCGTGGTTTTAGGTCA 57.453 42.857 0.00 0.00 0.00 4.02
8788 9129 3.876341 ACTTGTCGTGGTTTTAGGTCAA 58.124 40.909 0.00 0.00 0.00 3.18
8789 9130 4.263435 ACTTGTCGTGGTTTTAGGTCAAA 58.737 39.130 0.00 0.00 0.00 2.69
8790 9131 4.885325 ACTTGTCGTGGTTTTAGGTCAAAT 59.115 37.500 0.00 0.00 0.00 2.32
8791 9132 5.358725 ACTTGTCGTGGTTTTAGGTCAAATT 59.641 36.000 0.00 0.00 0.00 1.82
8792 9133 5.838531 TGTCGTGGTTTTAGGTCAAATTT 57.161 34.783 0.00 0.00 0.00 1.82
8793 9134 5.583495 TGTCGTGGTTTTAGGTCAAATTTG 58.417 37.500 12.15 12.15 0.00 2.32
8794 9135 5.357314 TGTCGTGGTTTTAGGTCAAATTTGA 59.643 36.000 16.91 16.91 34.20 2.69
8795 9136 5.912955 GTCGTGGTTTTAGGTCAAATTTGAG 59.087 40.000 21.05 5.35 37.98 3.02
8807 9148 6.753897 GTCAAATTTGAGCTAAAACCACTG 57.246 37.500 21.05 0.00 37.98 3.66
8808 9149 6.503524 GTCAAATTTGAGCTAAAACCACTGA 58.496 36.000 21.05 0.00 37.98 3.41
8809 9150 6.417930 GTCAAATTTGAGCTAAAACCACTGAC 59.582 38.462 21.05 6.00 37.98 3.51
8810 9151 6.096141 TCAAATTTGAGCTAAAACCACTGACA 59.904 34.615 16.91 0.00 32.50 3.58
8811 9152 6.463995 AATTTGAGCTAAAACCACTGACAA 57.536 33.333 0.00 0.00 0.00 3.18
8812 9153 5.499139 TTTGAGCTAAAACCACTGACAAG 57.501 39.130 0.00 0.00 0.00 3.16
8813 9154 4.150897 TGAGCTAAAACCACTGACAAGT 57.849 40.909 0.00 0.00 36.98 3.16
8814 9155 5.284861 TGAGCTAAAACCACTGACAAGTA 57.715 39.130 0.00 0.00 33.79 2.24
8815 9156 5.865085 TGAGCTAAAACCACTGACAAGTAT 58.135 37.500 0.00 0.00 33.79 2.12
8816 9157 6.296026 TGAGCTAAAACCACTGACAAGTATT 58.704 36.000 0.00 0.00 33.79 1.89
8817 9158 6.770785 TGAGCTAAAACCACTGACAAGTATTT 59.229 34.615 0.00 0.00 33.79 1.40
8818 9159 7.284489 TGAGCTAAAACCACTGACAAGTATTTT 59.716 33.333 0.00 0.00 37.52 1.82
8819 9160 7.425606 AGCTAAAACCACTGACAAGTATTTTG 58.574 34.615 0.00 0.00 35.87 2.44
8820 9161 6.640907 GCTAAAACCACTGACAAGTATTTTGG 59.359 38.462 8.93 7.72 35.87 3.28
8821 9162 6.783708 AAAACCACTGACAAGTATTTTGGA 57.216 33.333 0.00 0.00 34.75 3.53
8822 9163 6.391227 AAACCACTGACAAGTATTTTGGAG 57.609 37.500 0.00 0.00 33.79 3.86
8823 9164 4.398319 ACCACTGACAAGTATTTTGGAGG 58.602 43.478 0.00 0.00 33.79 4.30
8824 9165 4.141251 ACCACTGACAAGTATTTTGGAGGT 60.141 41.667 0.00 0.00 33.79 3.85
8825 9166 4.827284 CCACTGACAAGTATTTTGGAGGTT 59.173 41.667 0.00 0.00 33.79 3.50
8826 9167 5.301805 CCACTGACAAGTATTTTGGAGGTTT 59.698 40.000 0.00 0.00 33.79 3.27
8827 9168 6.183360 CCACTGACAAGTATTTTGGAGGTTTT 60.183 38.462 0.00 0.00 33.79 2.43
8828 9169 7.013846 CCACTGACAAGTATTTTGGAGGTTTTA 59.986 37.037 0.00 0.00 33.79 1.52
8829 9170 8.076178 CACTGACAAGTATTTTGGAGGTTTTAG 58.924 37.037 0.00 0.00 33.79 1.85
8830 9171 7.778382 ACTGACAAGTATTTTGGAGGTTTTAGT 59.222 33.333 0.00 0.00 33.79 2.24
8831 9172 8.528044 TGACAAGTATTTTGGAGGTTTTAGTT 57.472 30.769 0.00 0.00 0.00 2.24
8832 9173 8.626526 TGACAAGTATTTTGGAGGTTTTAGTTC 58.373 33.333 0.00 0.00 0.00 3.01
8833 9174 8.528044 ACAAGTATTTTGGAGGTTTTAGTTCA 57.472 30.769 0.00 0.00 0.00 3.18
8834 9175 8.973182 ACAAGTATTTTGGAGGTTTTAGTTCAA 58.027 29.630 0.00 0.00 0.00 2.69
8835 9176 9.810545 CAAGTATTTTGGAGGTTTTAGTTCAAA 57.189 29.630 0.00 0.00 0.00 2.69
8840 9181 9.898152 ATTTTGGAGGTTTTAGTTCAAATTTGA 57.102 25.926 16.91 16.91 34.92 2.69
8841 9182 9.726438 TTTTGGAGGTTTTAGTTCAAATTTGAA 57.274 25.926 26.01 26.01 44.31 2.69
8856 9197 9.658799 TTCAAATTTGAACTAAAACCATGACAA 57.341 25.926 26.01 1.80 41.88 3.18
8857 9198 9.311916 TCAAATTTGAACTAAAACCATGACAAG 57.688 29.630 18.45 0.00 33.55 3.16
8858 9199 9.097257 CAAATTTGAACTAAAACCATGACAAGT 57.903 29.630 13.08 0.00 0.00 3.16
8864 9205 9.743057 TGAACTAAAACCATGACAAGTATTTTG 57.257 29.630 0.00 0.00 0.00 2.44
8865 9206 9.191995 GAACTAAAACCATGACAAGTATTTTGG 57.808 33.333 0.00 0.00 0.00 3.28
8866 9207 8.472007 ACTAAAACCATGACAAGTATTTTGGA 57.528 30.769 0.00 0.00 0.00 3.53
8867 9208 8.919145 ACTAAAACCATGACAAGTATTTTGGAA 58.081 29.630 0.00 0.00 0.00 3.53
8868 9209 9.191995 CTAAAACCATGACAAGTATTTTGGAAC 57.808 33.333 0.00 0.00 0.00 3.62
8869 9210 5.371115 ACCATGACAAGTATTTTGGAACG 57.629 39.130 0.00 0.00 0.00 3.95
8870 9211 4.217550 ACCATGACAAGTATTTTGGAACGG 59.782 41.667 0.00 0.00 0.00 4.44
8871 9212 4.217550 CCATGACAAGTATTTTGGAACGGT 59.782 41.667 0.00 0.00 0.00 4.83
8872 9213 4.822036 TGACAAGTATTTTGGAACGGTG 57.178 40.909 0.00 0.00 0.00 4.94
8873 9214 3.566322 TGACAAGTATTTTGGAACGGTGG 59.434 43.478 0.00 0.00 0.00 4.61
8874 9215 2.888414 ACAAGTATTTTGGAACGGTGGG 59.112 45.455 0.00 0.00 0.00 4.61
8875 9216 3.150767 CAAGTATTTTGGAACGGTGGGA 58.849 45.455 0.00 0.00 0.00 4.37
8876 9217 3.067684 AGTATTTTGGAACGGTGGGAG 57.932 47.619 0.00 0.00 0.00 4.30
8877 9218 2.374170 AGTATTTTGGAACGGTGGGAGT 59.626 45.455 0.00 0.00 0.00 3.85
8878 9219 3.583966 AGTATTTTGGAACGGTGGGAGTA 59.416 43.478 0.00 0.00 0.00 2.59
8894 9235 7.816031 CGGTGGGAGTATATGTTTATTACGATT 59.184 37.037 0.00 0.00 0.00 3.34
8994 9335 0.910338 ATCTCTGGACAGCATGCACT 59.090 50.000 21.98 3.19 42.53 4.40
9038 9379 2.422597 CTGCCGAACTTGTATGAACCA 58.577 47.619 0.00 0.00 0.00 3.67
9057 9400 0.475906 AGTGCTTCTTCCAGGCAAGT 59.524 50.000 0.00 0.00 37.73 3.16
9103 9446 2.917933 CATTTCCGCAGAGGGTGATTA 58.082 47.619 0.00 0.00 41.52 1.75
9106 9449 3.644966 TTCCGCAGAGGGTGATTATTT 57.355 42.857 0.00 0.00 41.52 1.40
9109 9452 3.136443 TCCGCAGAGGGTGATTATTTCAT 59.864 43.478 0.00 0.00 41.52 2.57
9110 9453 4.346709 TCCGCAGAGGGTGATTATTTCATA 59.653 41.667 0.00 0.00 41.52 2.15
9111 9454 5.013079 TCCGCAGAGGGTGATTATTTCATAT 59.987 40.000 0.00 0.00 41.52 1.78
9112 9455 5.707298 CCGCAGAGGGTGATTATTTCATATT 59.293 40.000 0.00 0.00 36.54 1.28
9113 9456 6.878923 CCGCAGAGGGTGATTATTTCATATTA 59.121 38.462 0.00 0.00 36.54 0.98
9114 9457 7.148407 CCGCAGAGGGTGATTATTTCATATTAC 60.148 40.741 0.00 0.00 36.54 1.89
9115 9458 7.148407 CGCAGAGGGTGATTATTTCATATTACC 60.148 40.741 0.00 0.00 36.54 2.85
9116 9459 7.885399 GCAGAGGGTGATTATTTCATATTACCT 59.115 37.037 0.00 0.00 36.54 3.08
9117 9460 9.442047 CAGAGGGTGATTATTTCATATTACCTC 57.558 37.037 0.00 0.00 36.54 3.85
9118 9461 8.606830 AGAGGGTGATTATTTCATATTACCTCC 58.393 37.037 0.00 0.00 36.65 4.30
9119 9462 7.394816 AGGGTGATTATTTCATATTACCTCCG 58.605 38.462 0.00 0.00 36.54 4.63
9120 9463 7.017254 AGGGTGATTATTTCATATTACCTCCGT 59.983 37.037 0.00 0.00 36.54 4.69
9121 9464 7.333672 GGGTGATTATTTCATATTACCTCCGTC 59.666 40.741 0.00 0.00 36.54 4.79
9122 9465 7.333672 GGTGATTATTTCATATTACCTCCGTCC 59.666 40.741 0.00 0.00 36.54 4.79
9123 9466 7.333672 GTGATTATTTCATATTACCTCCGTCCC 59.666 40.741 0.00 0.00 36.54 4.46
9124 9467 6.750660 TTATTTCATATTACCTCCGTCCCA 57.249 37.500 0.00 0.00 0.00 4.37
9125 9468 5.640158 ATTTCATATTACCTCCGTCCCAA 57.360 39.130 0.00 0.00 0.00 4.12
9126 9469 5.438698 TTTCATATTACCTCCGTCCCAAA 57.561 39.130 0.00 0.00 0.00 3.28
9127 9470 5.640158 TTCATATTACCTCCGTCCCAAAT 57.360 39.130 0.00 0.00 0.00 2.32
9128 9471 5.640158 TCATATTACCTCCGTCCCAAATT 57.360 39.130 0.00 0.00 0.00 1.82
9129 9472 6.750660 TCATATTACCTCCGTCCCAAATTA 57.249 37.500 0.00 0.00 0.00 1.40
9130 9473 6.527423 TCATATTACCTCCGTCCCAAATTAC 58.473 40.000 0.00 0.00 0.00 1.89
9131 9474 6.328148 TCATATTACCTCCGTCCCAAATTACT 59.672 38.462 0.00 0.00 0.00 2.24
9132 9475 4.914177 TTACCTCCGTCCCAAATTACTT 57.086 40.909 0.00 0.00 0.00 2.24
9133 9476 3.067684 ACCTCCGTCCCAAATTACTTG 57.932 47.619 0.00 0.00 34.52 3.16
9148 9491 7.461107 CAAATTACTTGGATGTACCTAACACG 58.539 38.462 0.00 0.00 42.09 4.49
9149 9492 5.726980 TTACTTGGATGTACCTAACACGT 57.273 39.130 0.00 0.00 42.09 4.49
9150 9493 4.612264 ACTTGGATGTACCTAACACGTT 57.388 40.909 0.00 0.00 42.09 3.99
9151 9494 4.964593 ACTTGGATGTACCTAACACGTTT 58.035 39.130 0.00 0.00 42.09 3.60
9152 9495 6.100404 ACTTGGATGTACCTAACACGTTTA 57.900 37.500 0.00 0.00 42.09 2.01
9153 9496 6.161381 ACTTGGATGTACCTAACACGTTTAG 58.839 40.000 9.29 9.29 42.09 1.85
9154 9497 5.726980 TGGATGTACCTAACACGTTTAGT 57.273 39.130 13.05 0.00 42.09 2.24
9155 9498 5.472148 TGGATGTACCTAACACGTTTAGTG 58.528 41.667 13.05 0.00 46.92 2.74
9176 9519 4.847198 TGTTAGATACACCCGTGTCTAGA 58.153 43.478 3.23 0.00 43.94 2.43
9177 9520 4.637534 TGTTAGATACACCCGTGTCTAGAC 59.362 45.833 16.32 16.32 43.94 2.59
9178 9521 3.361281 AGATACACCCGTGTCTAGACA 57.639 47.619 21.74 21.74 41.37 3.41
9179 9522 3.693807 AGATACACCCGTGTCTAGACAA 58.306 45.455 26.74 10.28 41.37 3.18
9180 9523 4.084287 AGATACACCCGTGTCTAGACAAA 58.916 43.478 26.74 2.64 41.37 2.83
9181 9524 4.710375 AGATACACCCGTGTCTAGACAAAT 59.290 41.667 26.74 10.01 41.37 2.32
9182 9525 3.314541 ACACCCGTGTCTAGACAAATC 57.685 47.619 26.74 13.82 43.77 2.17
9183 9526 2.897969 ACACCCGTGTCTAGACAAATCT 59.102 45.455 26.74 7.75 43.77 2.40
9184 9527 4.084287 ACACCCGTGTCTAGACAAATCTA 58.916 43.478 26.74 0.20 43.77 1.98
9185 9528 4.525487 ACACCCGTGTCTAGACAAATCTAA 59.475 41.667 26.74 0.00 43.77 2.10
9186 9529 5.103000 CACCCGTGTCTAGACAAATCTAAG 58.897 45.833 26.74 13.37 43.77 2.18
9187 9530 4.771054 ACCCGTGTCTAGACAAATCTAAGT 59.229 41.667 26.74 13.95 43.77 2.24
9188 9531 5.948162 ACCCGTGTCTAGACAAATCTAAGTA 59.052 40.000 26.74 0.00 43.77 2.24
9189 9532 6.435277 ACCCGTGTCTAGACAAATCTAAGTAA 59.565 38.462 26.74 0.00 43.77 2.24
9190 9533 7.123847 ACCCGTGTCTAGACAAATCTAAGTAAT 59.876 37.037 26.74 1.20 43.77 1.89
9191 9534 7.980099 CCCGTGTCTAGACAAATCTAAGTAATT 59.020 37.037 26.74 0.00 43.77 1.40
9192 9535 9.367444 CCGTGTCTAGACAAATCTAAGTAATTT 57.633 33.333 26.74 0.00 43.77 1.82
9202 9545 9.401058 ACAAATCTAAGTAATTTGAGATGGAGG 57.599 33.333 13.76 0.00 43.60 4.30
9203 9546 8.844244 CAAATCTAAGTAATTTGAGATGGAGGG 58.156 37.037 3.12 0.00 43.60 4.30
9204 9547 7.937700 ATCTAAGTAATTTGAGATGGAGGGA 57.062 36.000 0.00 0.00 0.00 4.20
9205 9548 7.366847 TCTAAGTAATTTGAGATGGAGGGAG 57.633 40.000 0.00 0.00 0.00 4.30
9217 9560 0.470341 GGAGGGAGTAGATTGGTGGC 59.530 60.000 0.00 0.00 0.00 5.01
9220 9563 1.523938 GGAGTAGATTGGTGGCGGC 60.524 63.158 0.00 0.00 0.00 6.53
9235 9578 1.383523 GCGGCTAAGGAAAGCTTCAT 58.616 50.000 0.00 0.00 42.37 2.57
9241 9584 5.066505 CGGCTAAGGAAAGCTTCATATTGTT 59.933 40.000 0.00 0.00 42.37 2.83
9271 9627 0.529378 CCCTGGCTGAATTCTGTTGC 59.471 55.000 13.17 8.87 0.00 4.17
9309 9665 6.882678 AGATACTGTAATTTTGTACCCACACC 59.117 38.462 0.00 0.00 33.30 4.16
9312 9668 6.786122 ACTGTAATTTTGTACCCACACCTAT 58.214 36.000 0.00 0.00 33.30 2.57
9313 9669 7.235804 ACTGTAATTTTGTACCCACACCTATT 58.764 34.615 0.00 0.00 33.30 1.73
9337 9693 5.105877 TGACAATGTACAGGTGTAGACTAGC 60.106 44.000 13.41 2.77 0.00 3.42
9393 9749 3.745975 TGTTCTATTGTTTGACTGCGGAG 59.254 43.478 0.85 0.85 0.00 4.63
9402 9758 5.938322 TGTTTGACTGCGGAGATAAATTTC 58.062 37.500 12.26 0.00 0.00 2.17
9409 9765 4.780815 TGCGGAGATAAATTTCTGATGGT 58.219 39.130 0.00 0.00 0.00 3.55
9442 9798 5.751243 ATATGTTGGCGTTTGAGATTACC 57.249 39.130 0.00 0.00 0.00 2.85
9455 9811 5.917541 TGAGATTACCGAACTGAAACAAC 57.082 39.130 0.00 0.00 0.00 3.32
9492 9848 5.221722 TGTCCTGCTCATTCTACTGTTCTTT 60.222 40.000 0.00 0.00 0.00 2.52
9523 9879 1.647545 CGGCAGCGTGTCCAAATGAT 61.648 55.000 0.00 0.00 0.00 2.45
9524 9880 0.527565 GGCAGCGTGTCCAAATGATT 59.472 50.000 0.00 0.00 0.00 2.57
9525 9881 1.742831 GGCAGCGTGTCCAAATGATTA 59.257 47.619 0.00 0.00 0.00 1.75
9527 9883 2.223340 GCAGCGTGTCCAAATGATTAGG 60.223 50.000 0.00 0.00 0.00 2.69
9528 9884 2.355756 CAGCGTGTCCAAATGATTAGGG 59.644 50.000 0.00 0.00 0.00 3.53
9529 9885 1.065551 GCGTGTCCAAATGATTAGGGC 59.934 52.381 0.00 0.00 0.00 5.19
9530 9886 2.364632 CGTGTCCAAATGATTAGGGCA 58.635 47.619 0.00 0.00 34.03 5.36
9531 9887 2.752354 CGTGTCCAAATGATTAGGGCAA 59.248 45.455 0.00 0.00 39.00 4.52
9532 9888 3.427503 CGTGTCCAAATGATTAGGGCAAC 60.428 47.826 0.00 0.00 39.00 4.17
9533 9889 3.763897 GTGTCCAAATGATTAGGGCAACT 59.236 43.478 0.00 0.00 39.00 3.16
9534 9890 4.016444 TGTCCAAATGATTAGGGCAACTC 58.984 43.478 0.00 0.00 33.39 3.01
9535 9891 3.381590 GTCCAAATGATTAGGGCAACTCC 59.618 47.826 0.00 0.00 0.00 3.85
9536 9892 3.011144 TCCAAATGATTAGGGCAACTCCA 59.989 43.478 0.00 0.00 36.21 3.86
9537 9893 3.768757 CCAAATGATTAGGGCAACTCCAA 59.231 43.478 0.00 0.00 36.21 3.53
9538 9894 4.406649 CCAAATGATTAGGGCAACTCCAAT 59.593 41.667 0.00 0.00 36.21 3.16
9539 9895 5.353938 CAAATGATTAGGGCAACTCCAATG 58.646 41.667 0.00 0.00 36.21 2.82
9540 9896 2.378038 TGATTAGGGCAACTCCAATGC 58.622 47.619 0.00 0.00 43.08 3.56
9541 9897 2.291475 TGATTAGGGCAACTCCAATGCA 60.291 45.455 0.00 0.00 45.60 3.96
9542 9898 1.838112 TTAGGGCAACTCCAATGCAG 58.162 50.000 0.00 0.00 45.60 4.41
9563 9945 5.337009 GCAGATCACCAAATTGGAAACATCT 60.337 40.000 20.25 14.56 40.96 2.90
9590 9972 9.425577 GAATTAATCTCTAGTACATAAGGGCAC 57.574 37.037 0.00 0.00 0.00 5.01
9661 10043 7.265673 TCTCTAGTACATAACAGGCAATTCAC 58.734 38.462 0.00 0.00 0.00 3.18
9680 10062 0.652592 CGCGGATCACCAAATCTGAC 59.347 55.000 0.00 0.00 34.50 3.51
9690 10072 4.288366 TCACCAAATCTGACACATAAGGGA 59.712 41.667 0.00 0.00 0.00 4.20
9699 10083 3.998341 TGACACATAAGGGAAACTTACGC 59.002 43.478 0.00 0.00 44.04 4.42
9706 10090 1.004595 GGGAAACTTACGCGGATCAC 58.995 55.000 12.47 0.00 0.00 3.06
9709 10093 1.659098 GAAACTTACGCGGATCACCAG 59.341 52.381 12.47 0.00 35.59 4.00
9733 10117 1.269206 GGACACACTAAACGTCCACGA 60.269 52.381 6.03 0.00 46.98 4.35
9737 10121 2.034339 CACACTAAACGTCCACGAACAC 60.034 50.000 6.03 0.00 43.02 3.32
9743 10127 1.589461 CGTCCACGAACACGTTCCA 60.589 57.895 4.40 0.00 43.02 3.53
9766 10154 6.973474 CCAAAAACAAACGGACATACTAAACA 59.027 34.615 0.00 0.00 0.00 2.83
9769 10157 7.499321 AAACAAACGGACATACTAAACATCA 57.501 32.000 0.00 0.00 0.00 3.07
9787 10175 7.458409 AACATCAGCAGACACATCTAAAAAT 57.542 32.000 0.00 0.00 32.25 1.82
9794 10182 6.942576 AGCAGACACATCTAAAAATAGTTGGT 59.057 34.615 0.00 0.00 32.25 3.67
9798 10186 8.109634 AGACACATCTAAAAATAGTTGGTGGAT 58.890 33.333 0.00 0.00 31.46 3.41
9801 10189 8.335356 CACATCTAAAAATAGTTGGTGGATACG 58.665 37.037 0.00 0.00 42.51 3.06
9802 10190 8.044908 ACATCTAAAAATAGTTGGTGGATACGT 58.955 33.333 0.00 0.00 42.51 3.57
9804 10192 8.483307 TCTAAAAATAGTTGGTGGATACGTTC 57.517 34.615 0.00 0.00 42.51 3.95
9805 10193 8.095792 TCTAAAAATAGTTGGTGGATACGTTCA 58.904 33.333 0.00 0.00 42.51 3.18
9806 10194 7.513371 AAAAATAGTTGGTGGATACGTTCAA 57.487 32.000 0.00 0.00 42.51 2.69
9808 10196 6.490566 AATAGTTGGTGGATACGTTCAAAC 57.509 37.500 0.00 0.00 42.51 2.93
9821 10210 1.110442 TTCAAACAACAGCTGGTGGG 58.890 50.000 33.95 22.54 36.97 4.61
9822 10211 1.067916 CAAACAACAGCTGGTGGGC 59.932 57.895 33.95 0.00 36.97 5.36
9837 10226 2.230266 GGTGGGCGCTCTTTATTTTTCA 59.770 45.455 9.62 0.00 0.00 2.69
9864 10253 5.227238 CTTAGTAACTAAGCGTCCGAAGA 57.773 43.478 0.00 0.00 37.27 2.87
9865 10254 3.484334 AGTAACTAAGCGTCCGAAGAC 57.516 47.619 0.00 0.00 39.83 3.01
9866 10255 2.816087 AGTAACTAAGCGTCCGAAGACA 59.184 45.455 0.00 0.00 43.73 3.41
9870 10259 1.129251 CTAAGCGTCCGAAGACACGTA 59.871 52.381 0.00 0.00 43.73 3.57
9871 10260 0.311790 AAGCGTCCGAAGACACGTAA 59.688 50.000 0.00 0.00 43.73 3.18
9931 10320 0.893727 AAATGGCCGTGAACAGGTCC 60.894 55.000 0.00 0.00 30.98 4.46
9936 10325 0.741915 GCCGTGAACAGGTCCAAAAA 59.258 50.000 0.00 0.00 0.00 1.94
9937 10326 1.535226 GCCGTGAACAGGTCCAAAAAC 60.535 52.381 0.00 0.00 0.00 2.43
9938 10327 1.746220 CCGTGAACAGGTCCAAAAACA 59.254 47.619 0.00 0.00 0.00 2.83
9939 10328 2.223479 CCGTGAACAGGTCCAAAAACAG 60.223 50.000 0.00 0.00 0.00 3.16
9940 10329 2.422127 CGTGAACAGGTCCAAAAACAGT 59.578 45.455 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 5.581126 AGACATGCAAAAACAAGTTCAGA 57.419 34.783 0.00 0.00 0.00 3.27
135 137 8.532186 TTATACACAATGGCCATACAAGAATT 57.468 30.769 21.15 0.00 0.00 2.17
180 182 1.252215 CCATGCAGCCACAACCATGA 61.252 55.000 0.00 0.00 37.78 3.07
183 185 1.902918 GACCATGCAGCCACAACCA 60.903 57.895 0.00 0.00 0.00 3.67
186 188 0.399833 TGTAGACCATGCAGCCACAA 59.600 50.000 0.00 0.00 0.00 3.33
188 190 2.772739 CTGTAGACCATGCAGCCAC 58.227 57.895 0.00 0.00 34.70 5.01
204 206 3.599730 TGATGTTCAGTACCTCTGCTG 57.400 47.619 0.00 0.00 43.32 4.41
207 209 5.991606 TCTTTGTTGATGTTCAGTACCTCTG 59.008 40.000 0.00 0.00 44.85 3.35
208 210 6.174720 TCTTTGTTGATGTTCAGTACCTCT 57.825 37.500 0.00 0.00 0.00 3.69
209 211 6.706270 TCTTCTTTGTTGATGTTCAGTACCTC 59.294 38.462 0.00 0.00 0.00 3.85
210 212 6.591935 TCTTCTTTGTTGATGTTCAGTACCT 58.408 36.000 0.00 0.00 0.00 3.08
211 213 6.861065 TCTTCTTTGTTGATGTTCAGTACC 57.139 37.500 0.00 0.00 0.00 3.34
212 214 8.181573 TGTTTCTTCTTTGTTGATGTTCAGTAC 58.818 33.333 0.00 0.00 0.00 2.73
213 215 8.181573 GTGTTTCTTCTTTGTTGATGTTCAGTA 58.818 33.333 0.00 0.00 0.00 2.74
214 216 7.029563 GTGTTTCTTCTTTGTTGATGTTCAGT 58.970 34.615 0.00 0.00 0.00 3.41
233 235 2.039084 ACTCCCAGACCAGATGTGTTTC 59.961 50.000 0.00 0.00 0.00 2.78
235 237 1.734655 ACTCCCAGACCAGATGTGTT 58.265 50.000 0.00 0.00 0.00 3.32
237 239 3.303938 AGATACTCCCAGACCAGATGTG 58.696 50.000 0.00 0.00 0.00 3.21
238 240 3.697190 AGATACTCCCAGACCAGATGT 57.303 47.619 0.00 0.00 0.00 3.06
239 241 4.653341 AGAAAGATACTCCCAGACCAGATG 59.347 45.833 0.00 0.00 0.00 2.90
240 242 4.889780 AGAAAGATACTCCCAGACCAGAT 58.110 43.478 0.00 0.00 0.00 2.90
241 243 4.338795 AGAAAGATACTCCCAGACCAGA 57.661 45.455 0.00 0.00 0.00 3.86
242 244 4.223923 ACAAGAAAGATACTCCCAGACCAG 59.776 45.833 0.00 0.00 0.00 4.00
243 245 4.168101 ACAAGAAAGATACTCCCAGACCA 58.832 43.478 0.00 0.00 0.00 4.02
244 246 4.828072 ACAAGAAAGATACTCCCAGACC 57.172 45.455 0.00 0.00 0.00 3.85
245 247 5.105310 TGCTACAAGAAAGATACTCCCAGAC 60.105 44.000 0.00 0.00 0.00 3.51
379 382 4.831107 AGAAAGGAGCTCATTCTGAAGAC 58.169 43.478 24.92 8.86 32.42 3.01
440 476 4.732672 ACTATGGAAACGGAAGGAGTAC 57.267 45.455 0.00 0.00 0.00 2.73
460 496 8.837389 AGCCCTTTTAGATATTTCAATACGAAC 58.163 33.333 0.00 0.00 31.73 3.95
479 515 7.147794 CCCTCCGTTTTTAAATATAAGCCCTTT 60.148 37.037 0.00 0.00 0.00 3.11
495 534 4.617593 TCCTCTAATACTCCCTCCGTTTT 58.382 43.478 0.00 0.00 0.00 2.43
501 540 7.555195 GCTTATACTCTCCTCTAATACTCCCTC 59.445 44.444 0.00 0.00 0.00 4.30
502 541 7.241039 AGCTTATACTCTCCTCTAATACTCCCT 59.759 40.741 0.00 0.00 0.00 4.20
503 542 7.338449 CAGCTTATACTCTCCTCTAATACTCCC 59.662 44.444 0.00 0.00 0.00 4.30
504 543 7.338449 CCAGCTTATACTCTCCTCTAATACTCC 59.662 44.444 0.00 0.00 0.00 3.85
505 544 8.104566 TCCAGCTTATACTCTCCTCTAATACTC 58.895 40.741 0.00 0.00 0.00 2.59
506 545 7.991174 TCCAGCTTATACTCTCCTCTAATACT 58.009 38.462 0.00 0.00 0.00 2.12
507 546 8.638629 TTCCAGCTTATACTCTCCTCTAATAC 57.361 38.462 0.00 0.00 0.00 1.89
508 547 9.469097 GATTCCAGCTTATACTCTCCTCTAATA 57.531 37.037 0.00 0.00 0.00 0.98
509 548 7.398904 GGATTCCAGCTTATACTCTCCTCTAAT 59.601 40.741 0.00 0.00 0.00 1.73
510 549 6.722129 GGATTCCAGCTTATACTCTCCTCTAA 59.278 42.308 0.00 0.00 0.00 2.10
511 550 6.249951 GGATTCCAGCTTATACTCTCCTCTA 58.750 44.000 0.00 0.00 0.00 2.43
512 551 5.083821 GGATTCCAGCTTATACTCTCCTCT 58.916 45.833 0.00 0.00 0.00 3.69
513 552 4.221924 GGGATTCCAGCTTATACTCTCCTC 59.778 50.000 4.80 0.00 0.00 3.71
514 553 4.164204 GGGATTCCAGCTTATACTCTCCT 58.836 47.826 4.80 0.00 0.00 3.69
515 554 3.056465 CGGGATTCCAGCTTATACTCTCC 60.056 52.174 4.80 0.00 0.00 3.71
516 555 3.056465 CCGGGATTCCAGCTTATACTCTC 60.056 52.174 4.80 0.00 0.00 3.20
517 556 2.900546 CCGGGATTCCAGCTTATACTCT 59.099 50.000 4.80 0.00 0.00 3.24
518 557 2.897969 TCCGGGATTCCAGCTTATACTC 59.102 50.000 0.00 0.00 0.00 2.59
519 558 2.900546 CTCCGGGATTCCAGCTTATACT 59.099 50.000 0.00 0.00 0.00 2.12
520 559 2.613223 GCTCCGGGATTCCAGCTTATAC 60.613 54.545 0.00 0.00 31.49 1.47
521 560 1.623811 GCTCCGGGATTCCAGCTTATA 59.376 52.381 0.00 0.00 31.49 0.98
522 561 0.398318 GCTCCGGGATTCCAGCTTAT 59.602 55.000 0.00 0.00 31.49 1.73
523 562 1.696097 GGCTCCGGGATTCCAGCTTA 61.696 60.000 0.00 0.00 33.83 3.09
524 563 2.592308 GCTCCGGGATTCCAGCTT 59.408 61.111 0.00 0.00 31.49 3.74
525 564 3.483869 GGCTCCGGGATTCCAGCT 61.484 66.667 0.00 0.00 33.83 4.24
526 565 2.631012 ATTGGCTCCGGGATTCCAGC 62.631 60.000 15.08 0.83 32.90 4.85
527 566 0.536006 GATTGGCTCCGGGATTCCAG 60.536 60.000 15.08 0.00 0.00 3.86
528 567 1.278302 TGATTGGCTCCGGGATTCCA 61.278 55.000 12.53 12.53 0.00 3.53
545 584 4.332543 GCGACAGTGGACAAATGATAATGA 59.667 41.667 0.00 0.00 0.00 2.57
546 585 4.496341 GGCGACAGTGGACAAATGATAATG 60.496 45.833 0.00 0.00 0.00 1.90
547 586 3.627577 GGCGACAGTGGACAAATGATAAT 59.372 43.478 0.00 0.00 0.00 1.28
548 587 3.006940 GGCGACAGTGGACAAATGATAA 58.993 45.455 0.00 0.00 0.00 1.75
549 588 2.627945 GGCGACAGTGGACAAATGATA 58.372 47.619 0.00 0.00 0.00 2.15
550 589 1.453155 GGCGACAGTGGACAAATGAT 58.547 50.000 0.00 0.00 0.00 2.45
594 633 2.572191 TTATGTGACGATGTCGGGTC 57.428 50.000 7.38 0.00 44.95 4.46
618 657 5.692654 TCGACATATCACGAAACTTTTGTGA 59.307 36.000 21.77 21.77 45.71 3.58
645 684 5.185454 TCTTTAATCGCAATGGAGTCATGT 58.815 37.500 0.00 0.00 33.18 3.21
658 697 8.436200 AGCGTATAAATCATCTTCTTTAATCGC 58.564 33.333 13.68 13.68 39.83 4.58
669 708 3.255888 TGCTCCGAGCGTATAAATCATCT 59.744 43.478 15.58 0.00 46.26 2.90
678 717 0.315568 GGAATCTGCTCCGAGCGTAT 59.684 55.000 15.58 8.47 46.26 3.06
682 721 0.107945 AACTGGAATCTGCTCCGAGC 60.108 55.000 13.81 13.81 42.82 5.03
702 741 1.087501 GGATGAAAACTCCAGTCGCC 58.912 55.000 0.00 0.00 32.72 5.54
724 763 8.567796 GTTGATTTTGACACAAGCAACAAGCC 62.568 42.308 23.57 3.24 45.61 4.35
725 764 3.864583 TGATTTTGACACAAGCAACAAGC 59.135 39.130 0.00 0.00 46.19 4.01
726 765 5.788467 GTTGATTTTGACACAAGCAACAAG 58.212 37.500 23.57 0.00 45.61 3.16
733 772 6.315891 ACAATTTGGGTTGATTTTGACACAAG 59.684 34.615 0.78 0.00 40.00 3.16
736 775 6.983890 AGTACAATTTGGGTTGATTTTGACAC 59.016 34.615 0.78 0.00 33.37 3.67
738 777 7.597369 GGTAGTACAATTTGGGTTGATTTTGAC 59.403 37.037 2.06 0.00 33.37 3.18
739 778 7.287927 TGGTAGTACAATTTGGGTTGATTTTGA 59.712 33.333 2.06 0.00 33.37 2.69
740 779 7.437748 TGGTAGTACAATTTGGGTTGATTTTG 58.562 34.615 2.06 0.00 33.37 2.44
763 858 7.148255 TGTCGGTTTGATAATTTGAGAATCTGG 60.148 37.037 0.00 0.00 34.92 3.86
794 889 9.692325 GATAATAATAATTTGAGGATCCTGGCT 57.308 33.333 22.02 0.00 0.00 4.75
815 910 9.491675 TTGAATTGATTGTTGTGCTTTGATAAT 57.508 25.926 0.00 0.00 0.00 1.28
861 956 7.171508 GCCCCTTTTGAAAAATGTTTCTCTTAG 59.828 37.037 9.75 2.66 43.13 2.18
961 1067 4.260985 TCCCTTGTTCTATACACGTACGA 58.739 43.478 24.41 0.00 36.21 3.43
962 1068 4.497006 CCTCCCTTGTTCTATACACGTACG 60.497 50.000 15.01 15.01 36.21 3.67
967 1073 3.388350 CCTCCCTCCCTTGTTCTATACAC 59.612 52.174 0.00 0.00 36.21 2.90
977 1088 3.474570 CTCGGCCTCCCTCCCTTG 61.475 72.222 0.00 0.00 0.00 3.61
1242 1368 4.709397 TGTCCAAGAAGAAAAAGGAAGCAA 59.291 37.500 0.00 0.00 0.00 3.91
1248 1374 5.582689 ACAAGTGTCCAAGAAGAAAAAGG 57.417 39.130 0.00 0.00 0.00 3.11
1270 1396 6.155691 ACGCGAAGTAACAATCGAAATTAA 57.844 33.333 15.93 0.00 41.43 1.40
1272 1398 4.634991 GACGCGAAGTAACAATCGAAATT 58.365 39.130 15.93 0.00 41.43 1.82
1298 1425 0.245539 CAAAGCAGCCCAATCCACTG 59.754 55.000 0.00 0.00 34.48 3.66
1337 1464 3.071580 GAACCGATCCAAGAGCAGG 57.928 57.895 0.00 0.00 0.00 4.85
1445 1572 2.168496 TCTCTACCAGAACAAGTCGGG 58.832 52.381 0.00 0.00 46.38 5.14
1526 1653 7.101652 TCCATCTAGTCTAGCTTTAACAGTG 57.898 40.000 1.60 0.00 0.00 3.66
1554 1681 2.912956 TGATAAGGAGCAAAGGTCAGGT 59.087 45.455 0.00 0.00 0.00 4.00
1642 1896 3.538591 TGCATTCCTCATGTAAGCAGAG 58.461 45.455 0.00 0.00 34.98 3.35
1690 1944 5.824904 AGCAAAAGCACCACTATCATAAG 57.175 39.130 0.00 0.00 0.00 1.73
1730 1984 9.871238 CATTTTACTCCTAGAAGTAAAGCTACA 57.129 33.333 13.24 0.74 46.72 2.74
1802 2057 6.012745 ACCCATCCCTAAGAATCATATTTGC 58.987 40.000 0.00 0.00 0.00 3.68
1807 2062 3.916349 CCCACCCATCCCTAAGAATCATA 59.084 47.826 0.00 0.00 0.00 2.15
1842 2097 7.530426 AAATACAGCTCCATTCAAAGAAACT 57.470 32.000 0.00 0.00 0.00 2.66
1924 2179 3.119245 TGAGGTCTGGTCGCTACATAAAC 60.119 47.826 0.00 0.00 0.00 2.01
1925 2180 3.093814 TGAGGTCTGGTCGCTACATAAA 58.906 45.455 0.00 0.00 0.00 1.40
1926 2181 2.730382 TGAGGTCTGGTCGCTACATAA 58.270 47.619 0.00 0.00 0.00 1.90
1927 2182 2.430248 TGAGGTCTGGTCGCTACATA 57.570 50.000 0.00 0.00 0.00 2.29
2439 2697 6.303054 TGACACTTAATTGGGATTGAGTTGA 58.697 36.000 0.00 0.00 39.33 3.18
2599 2857 1.064017 AGTCTTGTGGGGAAAAGTGCA 60.064 47.619 0.00 0.00 0.00 4.57
2918 3176 4.072131 GGCAACTAAAACTCACATCTGGA 58.928 43.478 0.00 0.00 0.00 3.86
3131 3391 5.840243 TCTATTCCTCAAACATTGCATGG 57.160 39.130 0.00 0.00 33.60 3.66
3169 3429 7.941795 TTATTTTCCGCGGAATGTTTAAAAA 57.058 28.000 38.89 27.01 33.79 1.94
3170 3430 8.535690 AATTATTTTCCGCGGAATGTTTAAAA 57.464 26.923 38.89 27.71 33.79 1.52
3171 3431 7.008447 CGAATTATTTTCCGCGGAATGTTTAAA 59.992 33.333 38.89 28.41 33.79 1.52
3172 3432 6.469595 CGAATTATTTTCCGCGGAATGTTTAA 59.530 34.615 38.89 29.11 33.79 1.52
3173 3433 5.966503 CGAATTATTTTCCGCGGAATGTTTA 59.033 36.000 38.89 22.62 33.79 2.01
3174 3434 4.796312 CGAATTATTTTCCGCGGAATGTTT 59.204 37.500 38.89 26.04 33.79 2.83
3175 3435 4.142556 ACGAATTATTTTCCGCGGAATGTT 60.143 37.500 38.89 27.04 33.79 2.71
3176 3436 3.375922 ACGAATTATTTTCCGCGGAATGT 59.624 39.130 38.89 30.11 33.79 2.71
3177 3437 3.947626 ACGAATTATTTTCCGCGGAATG 58.052 40.909 38.89 22.01 33.79 2.67
3178 3438 5.051816 TCTACGAATTATTTTCCGCGGAAT 58.948 37.500 38.89 27.79 33.79 3.01
3179 3439 4.431809 TCTACGAATTATTTTCCGCGGAA 58.568 39.130 35.81 35.81 0.00 4.30
3180 3440 4.044336 TCTACGAATTATTTTCCGCGGA 57.956 40.909 27.28 27.28 0.00 5.54
3181 3441 4.782252 TTCTACGAATTATTTTCCGCGG 57.218 40.909 22.12 22.12 0.00 6.46
3182 3442 7.659290 ATTTTTCTACGAATTATTTTCCGCG 57.341 32.000 0.00 0.00 0.00 6.46
3220 3480 8.740123 ACGGGGAAAATTTGTTTTATCTTTTT 57.260 26.923 0.00 0.00 0.00 1.94
3221 3481 8.208224 AGACGGGGAAAATTTGTTTTATCTTTT 58.792 29.630 0.00 0.00 0.00 2.27
3222 3482 7.732025 AGACGGGGAAAATTTGTTTTATCTTT 58.268 30.769 0.00 0.00 0.00 2.52
3223 3483 7.297936 AGACGGGGAAAATTTGTTTTATCTT 57.702 32.000 0.00 0.00 0.00 2.40
3224 3484 6.911250 AGACGGGGAAAATTTGTTTTATCT 57.089 33.333 0.00 0.00 0.00 1.98
3225 3485 7.823665 ACTAGACGGGGAAAATTTGTTTTATC 58.176 34.615 0.00 0.00 0.00 1.75
3226 3486 7.770366 ACTAGACGGGGAAAATTTGTTTTAT 57.230 32.000 0.00 0.00 0.00 1.40
3227 3487 7.585579 AACTAGACGGGGAAAATTTGTTTTA 57.414 32.000 0.00 0.00 0.00 1.52
3228 3488 6.474140 AACTAGACGGGGAAAATTTGTTTT 57.526 33.333 0.00 0.00 0.00 2.43
3229 3489 6.999871 TCTAACTAGACGGGGAAAATTTGTTT 59.000 34.615 0.00 0.00 0.00 2.83
3230 3490 6.536447 TCTAACTAGACGGGGAAAATTTGTT 58.464 36.000 0.00 0.00 0.00 2.83
3231 3491 6.117975 TCTAACTAGACGGGGAAAATTTGT 57.882 37.500 0.00 0.00 0.00 2.83
3232 3492 7.443259 TTTCTAACTAGACGGGGAAAATTTG 57.557 36.000 0.00 0.00 30.81 2.32
3233 3493 8.645814 ATTTTCTAACTAGACGGGGAAAATTT 57.354 30.769 0.00 0.00 39.04 1.82
3234 3494 8.107729 AGATTTTCTAACTAGACGGGGAAAATT 58.892 33.333 17.72 10.99 40.83 1.82
3235 3495 7.631007 AGATTTTCTAACTAGACGGGGAAAAT 58.369 34.615 17.20 17.20 42.31 1.82
3236 3496 7.012661 AGATTTTCTAACTAGACGGGGAAAA 57.987 36.000 0.00 6.54 37.18 2.29
3237 3497 6.616237 AGATTTTCTAACTAGACGGGGAAA 57.384 37.500 0.00 0.00 30.81 3.13
3238 3498 7.121382 TCTAGATTTTCTAACTAGACGGGGAA 58.879 38.462 0.00 0.00 38.02 3.97
3239 3499 6.666678 TCTAGATTTTCTAACTAGACGGGGA 58.333 40.000 0.00 0.00 38.02 4.81
3240 3500 6.956202 TCTAGATTTTCTAACTAGACGGGG 57.044 41.667 0.00 0.00 38.02 5.73
3249 3509 9.886132 TGTTCACCCTATTCTAGATTTTCTAAC 57.114 33.333 0.00 0.00 0.00 2.34
3252 3512 9.981460 AAATGTTCACCCTATTCTAGATTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
3333 3593 9.658799 TGGAATTTATTCGGATTTTATTTGCAA 57.341 25.926 0.00 0.00 37.67 4.08
3334 3594 9.658799 TTGGAATTTATTCGGATTTTATTTGCA 57.341 25.926 0.00 0.00 37.67 4.08
3362 3622 8.704668 ACTGGAGGAAAAGTGTTAAAATCATTT 58.295 29.630 0.00 0.00 0.00 2.32
3363 3623 8.250143 ACTGGAGGAAAAGTGTTAAAATCATT 57.750 30.769 0.00 0.00 0.00 2.57
3364 3624 7.839680 ACTGGAGGAAAAGTGTTAAAATCAT 57.160 32.000 0.00 0.00 0.00 2.45
3365 3625 8.934023 ATACTGGAGGAAAAGTGTTAAAATCA 57.066 30.769 0.00 0.00 0.00 2.57
3368 3628 9.191479 TGAAATACTGGAGGAAAAGTGTTAAAA 57.809 29.630 0.00 0.00 28.94 1.52
3369 3629 8.754991 TGAAATACTGGAGGAAAAGTGTTAAA 57.245 30.769 0.00 0.00 28.94 1.52
3370 3630 8.934023 ATGAAATACTGGAGGAAAAGTGTTAA 57.066 30.769 0.00 0.00 28.94 2.01
3371 3631 8.934023 AATGAAATACTGGAGGAAAAGTGTTA 57.066 30.769 0.00 0.00 28.94 2.41
3372 3632 7.839680 AATGAAATACTGGAGGAAAAGTGTT 57.160 32.000 0.00 0.00 30.06 3.32
3373 3633 7.287696 ACAAATGAAATACTGGAGGAAAAGTGT 59.712 33.333 0.00 0.00 0.00 3.55
3374 3634 7.661040 ACAAATGAAATACTGGAGGAAAAGTG 58.339 34.615 0.00 0.00 0.00 3.16
3375 3635 7.839680 ACAAATGAAATACTGGAGGAAAAGT 57.160 32.000 0.00 0.00 0.00 2.66
3376 3636 9.546428 AAAACAAATGAAATACTGGAGGAAAAG 57.454 29.630 0.00 0.00 0.00 2.27
3377 3637 9.323985 CAAAACAAATGAAATACTGGAGGAAAA 57.676 29.630 0.00 0.00 0.00 2.29
3378 3638 7.930865 CCAAAACAAATGAAATACTGGAGGAAA 59.069 33.333 0.00 0.00 0.00 3.13
3379 3639 7.288852 TCCAAAACAAATGAAATACTGGAGGAA 59.711 33.333 0.00 0.00 0.00 3.36
3380 3640 6.780031 TCCAAAACAAATGAAATACTGGAGGA 59.220 34.615 0.00 0.00 0.00 3.71
3381 3641 6.991938 TCCAAAACAAATGAAATACTGGAGG 58.008 36.000 0.00 0.00 0.00 4.30
3382 3642 7.885297 TCTCCAAAACAAATGAAATACTGGAG 58.115 34.615 7.78 7.78 45.77 3.86
3383 3643 7.831691 TCTCCAAAACAAATGAAATACTGGA 57.168 32.000 0.00 0.00 0.00 3.86
3384 3644 8.143835 ACTTCTCCAAAACAAATGAAATACTGG 58.856 33.333 0.00 0.00 0.00 4.00
3385 3645 9.185192 GACTTCTCCAAAACAAATGAAATACTG 57.815 33.333 0.00 0.00 0.00 2.74
3386 3646 8.912988 TGACTTCTCCAAAACAAATGAAATACT 58.087 29.630 0.00 0.00 0.00 2.12
3387 3647 9.696917 ATGACTTCTCCAAAACAAATGAAATAC 57.303 29.630 0.00 0.00 0.00 1.89
3395 3655 9.965824 GAGAAAATATGACTTCTCCAAAACAAA 57.034 29.630 9.71 0.00 41.07 2.83
3404 3664 6.493189 AGAGGGGAGAAAATATGACTTCTC 57.507 41.667 11.45 11.45 44.53 2.87
3405 3665 6.899892 AAGAGGGGAGAAAATATGACTTCT 57.100 37.500 0.00 0.00 34.58 2.85
3406 3666 7.946381 AAAAGAGGGGAGAAAATATGACTTC 57.054 36.000 0.00 0.00 0.00 3.01
3407 3667 9.997172 AATAAAAGAGGGGAGAAAATATGACTT 57.003 29.630 0.00 0.00 0.00 3.01
3408 3668 9.997172 AAATAAAAGAGGGGAGAAAATATGACT 57.003 29.630 0.00 0.00 0.00 3.41
3448 3708 9.917129 GGTTTTAATTATTTTCTCTCCGGAAAA 57.083 29.630 5.23 3.13 45.32 2.29
3449 3709 9.080097 TGGTTTTAATTATTTTCTCTCCGGAAA 57.920 29.630 5.23 0.00 33.98 3.13
3450 3710 8.638629 TGGTTTTAATTATTTTCTCTCCGGAA 57.361 30.769 5.23 0.00 0.00 4.30
3451 3711 8.638629 TTGGTTTTAATTATTTTCTCTCCGGA 57.361 30.769 2.93 2.93 0.00 5.14
3452 3712 9.699703 TTTTGGTTTTAATTATTTTCTCTCCGG 57.300 29.630 0.00 0.00 0.00 5.14
3504 3764 9.618890 AGGATTTTCTCGAATTCTCATATTTGA 57.381 29.630 3.52 0.00 0.00 2.69
3505 3765 9.875675 GAGGATTTTCTCGAATTCTCATATTTG 57.124 33.333 3.52 0.00 40.12 2.32
3506 3766 9.618890 TGAGGATTTTCTCGAATTCTCATATTT 57.381 29.630 3.52 0.00 43.45 1.40
3507 3767 9.618890 TTGAGGATTTTCTCGAATTCTCATATT 57.381 29.630 6.64 0.00 46.09 1.28
3508 3768 9.050601 GTTGAGGATTTTCTCGAATTCTCATAT 57.949 33.333 6.64 0.00 46.09 1.78
3509 3769 8.260818 AGTTGAGGATTTTCTCGAATTCTCATA 58.739 33.333 6.64 0.00 46.09 2.15
3510 3770 7.108847 AGTTGAGGATTTTCTCGAATTCTCAT 58.891 34.615 6.64 0.00 46.09 2.90
3511 3771 6.467677 AGTTGAGGATTTTCTCGAATTCTCA 58.532 36.000 3.52 2.25 45.50 3.27
3512 3772 6.816140 AGAGTTGAGGATTTTCTCGAATTCTC 59.184 38.462 3.52 0.00 40.57 2.87
3513 3773 6.706295 AGAGTTGAGGATTTTCTCGAATTCT 58.294 36.000 3.52 0.00 36.61 2.40
3514 3774 6.816140 AGAGAGTTGAGGATTTTCTCGAATTC 59.184 38.462 0.00 0.00 39.33 2.17
3515 3775 6.706295 AGAGAGTTGAGGATTTTCTCGAATT 58.294 36.000 0.00 0.00 39.33 2.17
3516 3776 6.293004 AGAGAGTTGAGGATTTTCTCGAAT 57.707 37.500 0.00 0.00 39.33 3.34
3517 3777 5.336849 GGAGAGAGTTGAGGATTTTCTCGAA 60.337 44.000 0.00 0.00 39.33 3.71
3518 3778 4.158764 GGAGAGAGTTGAGGATTTTCTCGA 59.841 45.833 0.00 0.00 39.33 4.04
3519 3779 4.429108 GGAGAGAGTTGAGGATTTTCTCG 58.571 47.826 0.00 0.00 39.33 4.04
3520 3780 4.158764 TCGGAGAGAGTTGAGGATTTTCTC 59.841 45.833 0.00 0.00 35.62 2.87
3521 3781 4.090090 TCGGAGAGAGTTGAGGATTTTCT 58.910 43.478 0.00 0.00 0.00 2.52
3522 3782 4.457834 TCGGAGAGAGTTGAGGATTTTC 57.542 45.455 0.00 0.00 0.00 2.29
3537 3797 0.114560 AACTCAAGGACCCTCGGAGA 59.885 55.000 18.66 3.61 33.98 3.71
3538 3798 0.247736 CAACTCAAGGACCCTCGGAG 59.752 60.000 13.11 13.11 35.13 4.63
3539 3799 1.827399 GCAACTCAAGGACCCTCGGA 61.827 60.000 0.00 0.00 0.00 4.55
3540 3800 1.376037 GCAACTCAAGGACCCTCGG 60.376 63.158 0.00 0.00 0.00 4.63
3541 3801 0.035458 AAGCAACTCAAGGACCCTCG 59.965 55.000 0.00 0.00 0.00 4.63
3542 3802 2.355209 CCTAAGCAACTCAAGGACCCTC 60.355 54.545 0.00 0.00 0.00 4.30
3543 3803 1.630878 CCTAAGCAACTCAAGGACCCT 59.369 52.381 0.00 0.00 0.00 4.34
3544 3804 1.628846 TCCTAAGCAACTCAAGGACCC 59.371 52.381 0.00 0.00 33.18 4.46
3545 3805 3.636153 ATCCTAAGCAACTCAAGGACC 57.364 47.619 0.00 0.00 40.83 4.46
3546 3806 6.018669 CGATAAATCCTAAGCAACTCAAGGAC 60.019 42.308 0.00 0.00 40.83 3.85
3547 3807 6.049149 CGATAAATCCTAAGCAACTCAAGGA 58.951 40.000 0.00 0.00 42.17 3.36
3548 3808 6.049149 TCGATAAATCCTAAGCAACTCAAGG 58.951 40.000 0.00 0.00 0.00 3.61
3549 3809 6.201806 CCTCGATAAATCCTAAGCAACTCAAG 59.798 42.308 0.00 0.00 0.00 3.02
3550 3810 6.049149 CCTCGATAAATCCTAAGCAACTCAA 58.951 40.000 0.00 0.00 0.00 3.02
3551 3811 5.362717 TCCTCGATAAATCCTAAGCAACTCA 59.637 40.000 0.00 0.00 0.00 3.41
3552 3812 5.844004 TCCTCGATAAATCCTAAGCAACTC 58.156 41.667 0.00 0.00 0.00 3.01
3553 3813 5.871396 TCCTCGATAAATCCTAAGCAACT 57.129 39.130 0.00 0.00 0.00 3.16
3554 3814 7.012421 ACAAATCCTCGATAAATCCTAAGCAAC 59.988 37.037 0.00 0.00 0.00 4.17
3555 3815 7.054124 ACAAATCCTCGATAAATCCTAAGCAA 58.946 34.615 0.00 0.00 0.00 3.91
3556 3816 6.591935 ACAAATCCTCGATAAATCCTAAGCA 58.408 36.000 0.00 0.00 0.00 3.91
3557 3817 6.706270 TGACAAATCCTCGATAAATCCTAAGC 59.294 38.462 0.00 0.00 0.00 3.09
3558 3818 8.662781 TTGACAAATCCTCGATAAATCCTAAG 57.337 34.615 0.00 0.00 0.00 2.18
3559 3819 9.456147 TTTTGACAAATCCTCGATAAATCCTAA 57.544 29.630 0.50 0.00 0.00 2.69
3560 3820 9.627123 ATTTTGACAAATCCTCGATAAATCCTA 57.373 29.630 0.50 0.00 0.00 2.94
3561 3821 7.938140 TTTTGACAAATCCTCGATAAATCCT 57.062 32.000 0.50 0.00 0.00 3.24
3562 3822 7.168135 GCATTTTGACAAATCCTCGATAAATCC 59.832 37.037 0.50 0.00 29.41 3.01
3563 3823 7.701924 TGCATTTTGACAAATCCTCGATAAATC 59.298 33.333 0.50 0.00 29.41 2.17
3564 3824 7.546358 TGCATTTTGACAAATCCTCGATAAAT 58.454 30.769 0.50 0.00 29.41 1.40
3565 3825 6.918626 TGCATTTTGACAAATCCTCGATAAA 58.081 32.000 0.50 0.00 29.41 1.40
3566 3826 6.507958 TGCATTTTGACAAATCCTCGATAA 57.492 33.333 0.50 0.00 29.41 1.75
3567 3827 6.507958 TTGCATTTTGACAAATCCTCGATA 57.492 33.333 0.50 0.00 29.41 2.92
3568 3828 5.389859 TTGCATTTTGACAAATCCTCGAT 57.610 34.783 0.50 0.00 29.41 3.59
3569 3829 4.844998 TTGCATTTTGACAAATCCTCGA 57.155 36.364 0.50 0.00 29.41 4.04
3570 3830 7.579589 TTTATTGCATTTTGACAAATCCTCG 57.420 32.000 0.50 0.00 29.41 4.63
3630 3890 9.054922 ACTGTAACATCCCAAATTTTCAATTTG 57.945 29.630 12.97 12.97 38.39 2.32
3631 3891 9.625747 AACTGTAACATCCCAAATTTTCAATTT 57.374 25.926 0.00 0.00 0.00 1.82
3632 3892 9.625747 AAACTGTAACATCCCAAATTTTCAATT 57.374 25.926 0.00 0.00 0.00 2.32
3635 3895 9.535878 GTTAAACTGTAACATCCCAAATTTTCA 57.464 29.630 0.00 0.00 0.00 2.69
3636 3896 9.758651 AGTTAAACTGTAACATCCCAAATTTTC 57.241 29.630 0.00 0.00 0.00 2.29
3637 3897 9.541143 CAGTTAAACTGTAACATCCCAAATTTT 57.459 29.630 1.52 0.00 41.19 1.82
3654 3914 9.502091 TGCATTATACTTTCTGACAGTTAAACT 57.498 29.630 1.29 0.00 0.00 2.66
3694 3954 5.600908 ACGCAAATACGTTTACTGTTCAT 57.399 34.783 0.00 0.00 45.75 2.57
3784 4044 1.021968 ACGACAAAACAGGAAGTGGC 58.978 50.000 0.00 0.00 0.00 5.01
4121 4381 2.126882 CTTCAGGGTATCCATGGACCA 58.873 52.381 18.99 5.00 37.47 4.02
4265 4525 4.442706 GACCGTCATGTGACCTAATTCAT 58.557 43.478 7.51 0.00 41.86 2.57
4377 4637 7.829211 CCTCCTGTTTGGATAAGAATCTGTTAA 59.171 37.037 0.00 0.00 45.16 2.01
4438 4698 1.205893 GCTTCTCCAGATTCCACGTCT 59.794 52.381 0.00 0.00 0.00 4.18
4519 4779 8.105829 AGTAAATAGGAGGCATGGAATTATGAG 58.894 37.037 0.00 0.00 0.00 2.90
4564 4824 7.141363 ACAAAGCTGCAAAATAGTAGAAACAG 58.859 34.615 1.02 0.00 0.00 3.16
4623 4883 1.539065 GCTCCACGTGATACAGGGATG 60.539 57.143 19.30 0.00 0.00 3.51
4834 5099 5.308014 TGGATCAATGGATGTGTATACAGC 58.692 41.667 5.62 0.00 42.34 4.40
4835 5100 7.118825 GTGATGGATCAATGGATGTGTATACAG 59.881 40.741 5.62 0.00 38.23 2.74
4836 5101 6.936335 GTGATGGATCAATGGATGTGTATACA 59.064 38.462 0.08 0.08 38.80 2.29
4837 5102 6.372659 GGTGATGGATCAATGGATGTGTATAC 59.627 42.308 0.00 0.00 38.75 1.47
4838 5103 6.044171 TGGTGATGGATCAATGGATGTGTATA 59.956 38.462 0.00 0.00 38.75 1.47
5264 5529 4.580868 TGTCCAATACGCCACTTATTTGA 58.419 39.130 0.00 0.00 0.00 2.69
5352 5617 9.755804 TGCACAAAACACAAGAAAATTATCATA 57.244 25.926 0.00 0.00 0.00 2.15
5353 5618 8.659925 TGCACAAAACACAAGAAAATTATCAT 57.340 26.923 0.00 0.00 0.00 2.45
5354 5619 8.659925 ATGCACAAAACACAAGAAAATTATCA 57.340 26.923 0.00 0.00 0.00 2.15
5416 5682 4.713824 TGGAGACTAACACGGTATTCAG 57.286 45.455 0.00 0.00 0.00 3.02
5421 5687 3.068024 ACGTTTTGGAGACTAACACGGTA 59.932 43.478 10.14 0.00 35.64 4.02
5644 5910 7.255836 CCATATCGGAGGTCAAGTTTATGTAGA 60.256 40.741 0.00 0.00 36.56 2.59
5850 6116 7.040686 ACGTTGTAAAAAGGATAGCTGATTTGT 60.041 33.333 0.00 0.00 0.00 2.83
6070 6337 8.339344 TCTGAAGATCTGTCAAATAAAATGCA 57.661 30.769 0.00 0.00 0.00 3.96
6120 6387 0.455633 CAGTTCTTCGCAGCATTGGC 60.456 55.000 0.00 0.00 41.61 4.52
6365 6673 2.812983 GCTGGCATCTAGAATGCATGGA 60.813 50.000 21.11 0.00 46.21 3.41
6416 6724 5.235186 CCATATTCGCTCTTTACTTCCAGTG 59.765 44.000 0.00 0.00 0.00 3.66
6602 6910 4.775253 GGGTGGGGAAAATTTGTAATCTGA 59.225 41.667 0.00 0.00 0.00 3.27
7008 7317 8.814038 ACTATGTGCCAGAAAGAAAGATATTT 57.186 30.769 0.00 0.00 0.00 1.40
7251 7560 2.691011 AGCCTCTGCACTAGTTACTAGC 59.309 50.000 18.29 7.87 41.13 3.42
7314 7623 3.865164 CCACAAAGGCTCACAAAAAGAAC 59.135 43.478 0.00 0.00 0.00 3.01
7497 7806 0.038526 ACGTCCTGTTGTAAGCTCCG 60.039 55.000 0.00 0.00 0.00 4.63
7925 8262 7.277981 AGCTTGGTCGATTATACAAAACTACTG 59.722 37.037 0.00 0.00 0.00 2.74
7931 8268 4.941263 AGCAGCTTGGTCGATTATACAAAA 59.059 37.500 0.00 0.00 0.00 2.44
7932 8269 4.513442 AGCAGCTTGGTCGATTATACAAA 58.487 39.130 0.00 0.00 0.00 2.83
8081 8418 2.054232 TTTCAGGCAACGTTAACCCA 57.946 45.000 14.25 1.33 46.39 4.51
8377 8714 1.673665 CTTCTGCAGCCACCTGTCC 60.674 63.158 9.47 0.00 41.26 4.02
8486 8823 1.135333 GTCGGAGCTTAGACCTTCAGG 59.865 57.143 10.36 0.00 42.17 3.86
8596 8933 1.134818 TGAGTGGTGTGTGTCTGTCAC 60.135 52.381 0.00 0.00 46.31 3.67
8597 8934 1.134818 GTGAGTGGTGTGTGTCTGTCA 60.135 52.381 0.00 0.00 0.00 3.58
8598 8935 1.571919 GTGAGTGGTGTGTGTCTGTC 58.428 55.000 0.00 0.00 0.00 3.51
8599 8936 0.178068 GGTGAGTGGTGTGTGTCTGT 59.822 55.000 0.00 0.00 0.00 3.41
8600 8937 0.177836 TGGTGAGTGGTGTGTGTCTG 59.822 55.000 0.00 0.00 0.00 3.51
8601 8938 1.070758 GATGGTGAGTGGTGTGTGTCT 59.929 52.381 0.00 0.00 0.00 3.41
8602 8939 1.070758 AGATGGTGAGTGGTGTGTGTC 59.929 52.381 0.00 0.00 0.00 3.67
8603 8940 1.131638 AGATGGTGAGTGGTGTGTGT 58.868 50.000 0.00 0.00 0.00 3.72
8604 8941 3.401033 TTAGATGGTGAGTGGTGTGTG 57.599 47.619 0.00 0.00 0.00 3.82
8605 8942 3.055094 GGATTAGATGGTGAGTGGTGTGT 60.055 47.826 0.00 0.00 0.00 3.72
8606 8943 3.055167 TGGATTAGATGGTGAGTGGTGTG 60.055 47.826 0.00 0.00 0.00 3.82
8607 8944 3.181329 TGGATTAGATGGTGAGTGGTGT 58.819 45.455 0.00 0.00 0.00 4.16
8608 8945 3.912496 TGGATTAGATGGTGAGTGGTG 57.088 47.619 0.00 0.00 0.00 4.17
8609 8946 5.440610 GAAATGGATTAGATGGTGAGTGGT 58.559 41.667 0.00 0.00 0.00 4.16
8610 8947 4.823989 GGAAATGGATTAGATGGTGAGTGG 59.176 45.833 0.00 0.00 0.00 4.00
8611 8948 5.688807 AGGAAATGGATTAGATGGTGAGTG 58.311 41.667 0.00 0.00 0.00 3.51
8612 8949 5.983333 AGGAAATGGATTAGATGGTGAGT 57.017 39.130 0.00 0.00 0.00 3.41
8623 8960 3.139077 GGCGTCGATAAGGAAATGGATT 58.861 45.455 0.00 0.00 0.00 3.01
8698 9035 5.163195 ACCCAACTAAGTGAGATGTTGTTCT 60.163 40.000 0.00 0.00 38.35 3.01
8699 9036 5.049405 CACCCAACTAAGTGAGATGTTGTTC 60.049 44.000 0.00 0.00 38.35 3.18
8700 9037 4.821805 CACCCAACTAAGTGAGATGTTGTT 59.178 41.667 0.00 0.00 38.35 2.83
8702 9039 4.214119 CACACCCAACTAAGTGAGATGTTG 59.786 45.833 0.00 0.00 39.35 3.33
8714 9055 3.088532 GGATCAAATGCACACCCAACTA 58.911 45.455 0.00 0.00 0.00 2.24
8719 9060 1.826720 ACATGGATCAAATGCACACCC 59.173 47.619 0.00 0.00 31.88 4.61
8746 9087 5.434408 AGTATTTTGGAACGGAGGGATTAC 58.566 41.667 0.00 0.00 0.00 1.89
8748 9089 4.586306 AGTATTTTGGAACGGAGGGATT 57.414 40.909 0.00 0.00 0.00 3.01
8749 9090 4.263771 ACAAGTATTTTGGAACGGAGGGAT 60.264 41.667 0.00 0.00 0.00 3.85
8750 9091 3.073356 ACAAGTATTTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
8751 9092 3.418047 ACAAGTATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
8752 9093 3.124636 CGACAAGTATTTTGGAACGGAGG 59.875 47.826 0.00 0.00 0.00 4.30
8753 9094 3.744426 ACGACAAGTATTTTGGAACGGAG 59.256 43.478 0.00 0.00 0.00 4.63
8754 9095 3.495377 CACGACAAGTATTTTGGAACGGA 59.505 43.478 0.00 0.00 0.00 4.69
8755 9096 3.364565 CCACGACAAGTATTTTGGAACGG 60.365 47.826 0.00 0.00 0.00 4.44
8756 9097 3.249080 ACCACGACAAGTATTTTGGAACG 59.751 43.478 0.00 0.00 0.00 3.95
8757 9098 4.823790 ACCACGACAAGTATTTTGGAAC 57.176 40.909 0.00 0.00 0.00 3.62
8758 9099 5.838531 AAACCACGACAAGTATTTTGGAA 57.161 34.783 0.00 0.00 0.00 3.53
8759 9100 5.838531 AAAACCACGACAAGTATTTTGGA 57.161 34.783 0.00 0.00 32.41 3.53
8760 9101 6.146898 CCTAAAACCACGACAAGTATTTTGG 58.853 40.000 0.00 0.00 34.30 3.28
8761 9102 6.731164 ACCTAAAACCACGACAAGTATTTTG 58.269 36.000 0.00 0.00 34.30 2.44
8762 9103 6.543100 TGACCTAAAACCACGACAAGTATTTT 59.457 34.615 0.00 0.00 35.65 1.82
8763 9104 6.056884 TGACCTAAAACCACGACAAGTATTT 58.943 36.000 0.00 0.00 0.00 1.40
8764 9105 5.613329 TGACCTAAAACCACGACAAGTATT 58.387 37.500 0.00 0.00 0.00 1.89
8765 9106 5.217978 TGACCTAAAACCACGACAAGTAT 57.782 39.130 0.00 0.00 0.00 2.12
8766 9107 4.669206 TGACCTAAAACCACGACAAGTA 57.331 40.909 0.00 0.00 0.00 2.24
8767 9108 3.547054 TGACCTAAAACCACGACAAGT 57.453 42.857 0.00 0.00 0.00 3.16
8768 9109 4.886247 TTTGACCTAAAACCACGACAAG 57.114 40.909 0.00 0.00 0.00 3.16
8769 9110 5.838531 AATTTGACCTAAAACCACGACAA 57.161 34.783 0.00 0.00 0.00 3.18
8770 9111 5.357314 TCAAATTTGACCTAAAACCACGACA 59.643 36.000 16.91 0.00 31.01 4.35
8771 9112 5.823353 TCAAATTTGACCTAAAACCACGAC 58.177 37.500 16.91 0.00 31.01 4.34
8772 9113 5.506649 GCTCAAATTTGACCTAAAACCACGA 60.507 40.000 16.91 0.00 32.90 4.35
8773 9114 4.679654 GCTCAAATTTGACCTAAAACCACG 59.320 41.667 16.91 4.29 32.90 4.94
8774 9115 5.842907 AGCTCAAATTTGACCTAAAACCAC 58.157 37.500 16.91 0.00 32.90 4.16
8775 9116 7.589958 TTAGCTCAAATTTGACCTAAAACCA 57.410 32.000 24.21 9.44 34.26 3.67
8776 9117 8.880878 TTTTAGCTCAAATTTGACCTAAAACC 57.119 30.769 33.22 13.63 43.42 3.27
8778 9119 8.478877 TGGTTTTAGCTCAAATTTGACCTAAAA 58.521 29.630 33.22 33.22 44.65 1.52
8779 9120 7.923878 GTGGTTTTAGCTCAAATTTGACCTAAA 59.076 33.333 28.80 28.80 40.68 1.85
8780 9121 7.286775 AGTGGTTTTAGCTCAAATTTGACCTAA 59.713 33.333 23.24 23.24 34.97 2.69
8781 9122 6.775629 AGTGGTTTTAGCTCAAATTTGACCTA 59.224 34.615 16.91 16.42 32.90 3.08
8782 9123 5.598417 AGTGGTTTTAGCTCAAATTTGACCT 59.402 36.000 16.91 17.42 32.90 3.85
8783 9124 5.691754 CAGTGGTTTTAGCTCAAATTTGACC 59.308 40.000 16.91 14.85 32.90 4.02
8784 9125 6.417930 GTCAGTGGTTTTAGCTCAAATTTGAC 59.582 38.462 16.91 13.31 32.90 3.18
8785 9126 6.096141 TGTCAGTGGTTTTAGCTCAAATTTGA 59.904 34.615 19.45 19.45 35.57 2.69
8786 9127 6.272318 TGTCAGTGGTTTTAGCTCAAATTTG 58.728 36.000 12.15 12.15 0.00 2.32
8787 9128 6.463995 TGTCAGTGGTTTTAGCTCAAATTT 57.536 33.333 0.00 0.00 0.00 1.82
8788 9129 6.096846 ACTTGTCAGTGGTTTTAGCTCAAATT 59.903 34.615 0.00 0.00 0.00 1.82
8789 9130 5.594317 ACTTGTCAGTGGTTTTAGCTCAAAT 59.406 36.000 0.00 0.00 0.00 2.32
8790 9131 4.947388 ACTTGTCAGTGGTTTTAGCTCAAA 59.053 37.500 0.00 0.00 0.00 2.69
8791 9132 4.523083 ACTTGTCAGTGGTTTTAGCTCAA 58.477 39.130 0.00 0.00 0.00 3.02
8792 9133 4.150897 ACTTGTCAGTGGTTTTAGCTCA 57.849 40.909 0.00 0.00 0.00 4.26
8793 9134 6.803154 AATACTTGTCAGTGGTTTTAGCTC 57.197 37.500 0.00 0.00 34.06 4.09
8794 9135 7.425606 CAAAATACTTGTCAGTGGTTTTAGCT 58.574 34.615 0.00 0.00 33.68 3.32
8795 9136 6.640907 CCAAAATACTTGTCAGTGGTTTTAGC 59.359 38.462 0.00 0.00 33.68 3.09
8796 9137 7.936584 TCCAAAATACTTGTCAGTGGTTTTAG 58.063 34.615 0.00 0.00 33.68 1.85
8797 9138 7.013846 CCTCCAAAATACTTGTCAGTGGTTTTA 59.986 37.037 0.00 0.00 33.68 1.52
8798 9139 6.183360 CCTCCAAAATACTTGTCAGTGGTTTT 60.183 38.462 0.00 0.00 34.78 2.43
8799 9140 5.301805 CCTCCAAAATACTTGTCAGTGGTTT 59.698 40.000 0.00 0.00 34.06 3.27
8800 9141 4.827284 CCTCCAAAATACTTGTCAGTGGTT 59.173 41.667 0.00 0.00 34.06 3.67
8801 9142 4.141251 ACCTCCAAAATACTTGTCAGTGGT 60.141 41.667 0.00 0.00 34.06 4.16
8802 9143 4.398319 ACCTCCAAAATACTTGTCAGTGG 58.602 43.478 0.00 0.00 34.06 4.00
8803 9144 6.391227 AAACCTCCAAAATACTTGTCAGTG 57.609 37.500 0.00 0.00 34.06 3.66
8804 9145 7.778382 ACTAAAACCTCCAAAATACTTGTCAGT 59.222 33.333 0.00 0.00 36.99 3.41
8805 9146 8.166422 ACTAAAACCTCCAAAATACTTGTCAG 57.834 34.615 0.00 0.00 0.00 3.51
8806 9147 8.528044 AACTAAAACCTCCAAAATACTTGTCA 57.472 30.769 0.00 0.00 0.00 3.58
8807 9148 8.626526 TGAACTAAAACCTCCAAAATACTTGTC 58.373 33.333 0.00 0.00 0.00 3.18
8808 9149 8.528044 TGAACTAAAACCTCCAAAATACTTGT 57.472 30.769 0.00 0.00 0.00 3.16
8809 9150 9.810545 TTTGAACTAAAACCTCCAAAATACTTG 57.189 29.630 0.00 0.00 0.00 3.16
8814 9155 9.898152 TCAAATTTGAACTAAAACCTCCAAAAT 57.102 25.926 18.45 0.00 33.55 1.82
8815 9156 9.726438 TTCAAATTTGAACTAAAACCTCCAAAA 57.274 25.926 26.01 1.80 41.88 2.44
8830 9171 9.658799 TTGTCATGGTTTTAGTTCAAATTTGAA 57.341 25.926 26.01 26.01 44.31 2.69
8831 9172 9.311916 CTTGTCATGGTTTTAGTTCAAATTTGA 57.688 29.630 16.91 16.91 34.92 2.69
8832 9173 9.097257 ACTTGTCATGGTTTTAGTTCAAATTTG 57.903 29.630 12.15 12.15 0.00 2.32
8838 9179 9.743057 CAAAATACTTGTCATGGTTTTAGTTCA 57.257 29.630 0.00 0.00 0.00 3.18
8839 9180 9.191995 CCAAAATACTTGTCATGGTTTTAGTTC 57.808 33.333 0.00 0.00 0.00 3.01
8840 9181 8.919145 TCCAAAATACTTGTCATGGTTTTAGTT 58.081 29.630 0.00 0.00 0.00 2.24
8841 9182 8.472007 TCCAAAATACTTGTCATGGTTTTAGT 57.528 30.769 0.00 0.00 0.00 2.24
8842 9183 9.191995 GTTCCAAAATACTTGTCATGGTTTTAG 57.808 33.333 0.00 0.00 0.00 1.85
8843 9184 7.863375 CGTTCCAAAATACTTGTCATGGTTTTA 59.137 33.333 0.00 0.00 0.00 1.52
8844 9185 6.699642 CGTTCCAAAATACTTGTCATGGTTTT 59.300 34.615 0.00 0.00 0.00 2.43
8845 9186 6.212955 CGTTCCAAAATACTTGTCATGGTTT 58.787 36.000 0.00 0.00 0.00 3.27
8846 9187 5.278758 CCGTTCCAAAATACTTGTCATGGTT 60.279 40.000 0.00 0.00 0.00 3.67
8847 9188 4.217550 CCGTTCCAAAATACTTGTCATGGT 59.782 41.667 0.00 0.00 0.00 3.55
8848 9189 4.217550 ACCGTTCCAAAATACTTGTCATGG 59.782 41.667 0.00 0.00 0.00 3.66
8849 9190 5.153513 CACCGTTCCAAAATACTTGTCATG 58.846 41.667 0.00 0.00 0.00 3.07
8850 9191 4.217550 CCACCGTTCCAAAATACTTGTCAT 59.782 41.667 0.00 0.00 0.00 3.06
8851 9192 3.566322 CCACCGTTCCAAAATACTTGTCA 59.434 43.478 0.00 0.00 0.00 3.58
8852 9193 3.057806 CCCACCGTTCCAAAATACTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
8853 9194 2.888414 CCCACCGTTCCAAAATACTTGT 59.112 45.455 0.00 0.00 0.00 3.16
8854 9195 3.150767 TCCCACCGTTCCAAAATACTTG 58.849 45.455 0.00 0.00 0.00 3.16
8855 9196 3.181437 ACTCCCACCGTTCCAAAATACTT 60.181 43.478 0.00 0.00 0.00 2.24
8856 9197 2.374170 ACTCCCACCGTTCCAAAATACT 59.626 45.455 0.00 0.00 0.00 2.12
8857 9198 2.786777 ACTCCCACCGTTCCAAAATAC 58.213 47.619 0.00 0.00 0.00 1.89
8858 9199 4.847990 ATACTCCCACCGTTCCAAAATA 57.152 40.909 0.00 0.00 0.00 1.40
8859 9200 3.732048 ATACTCCCACCGTTCCAAAAT 57.268 42.857 0.00 0.00 0.00 1.82
8860 9201 4.019141 ACATATACTCCCACCGTTCCAAAA 60.019 41.667 0.00 0.00 0.00 2.44
8861 9202 3.520317 ACATATACTCCCACCGTTCCAAA 59.480 43.478 0.00 0.00 0.00 3.28
8862 9203 3.109151 ACATATACTCCCACCGTTCCAA 58.891 45.455 0.00 0.00 0.00 3.53
8863 9204 2.754465 ACATATACTCCCACCGTTCCA 58.246 47.619 0.00 0.00 0.00 3.53
8864 9205 3.832615 AACATATACTCCCACCGTTCC 57.167 47.619 0.00 0.00 0.00 3.62
8865 9206 7.115378 CGTAATAAACATATACTCCCACCGTTC 59.885 40.741 0.00 0.00 0.00 3.95
8866 9207 6.925165 CGTAATAAACATATACTCCCACCGTT 59.075 38.462 0.00 0.00 0.00 4.44
8867 9208 6.265196 TCGTAATAAACATATACTCCCACCGT 59.735 38.462 0.00 0.00 0.00 4.83
8868 9209 6.680810 TCGTAATAAACATATACTCCCACCG 58.319 40.000 0.00 0.00 0.00 4.94
8869 9210 9.498176 AAATCGTAATAAACATATACTCCCACC 57.502 33.333 0.00 0.00 0.00 4.61
8917 9258 7.330454 TGATCTGAACGAGAAGAAGAGAATTTG 59.670 37.037 0.00 0.00 33.12 2.32
8918 9259 7.382110 TGATCTGAACGAGAAGAAGAGAATTT 58.618 34.615 0.00 0.00 33.12 1.82
8925 9266 6.526325 CAGTAGTTGATCTGAACGAGAAGAAG 59.474 42.308 0.00 0.00 33.12 2.85
8929 9270 5.707242 ACAGTAGTTGATCTGAACGAGAA 57.293 39.130 0.00 0.00 33.12 2.87
8931 9272 7.306213 TCTTAACAGTAGTTGATCTGAACGAG 58.694 38.462 0.00 0.00 38.69 4.18
8961 9302 5.222233 TGTCCAGAGATGGTTTTATTTCCCA 60.222 40.000 0.00 0.00 0.00 4.37
8973 9314 0.107361 TGCATGCTGTCCAGAGATGG 60.107 55.000 20.33 0.00 0.00 3.51
8994 9335 5.240403 GCACATTTTATTTTCCTTTTGGCCA 59.760 36.000 0.00 0.00 40.12 5.36
9038 9379 0.475906 ACTTGCCTGGAAGAAGCACT 59.524 50.000 5.36 0.00 35.96 4.40
9065 9408 6.165577 GGAAATGCAGTCAAAATACAATGGT 58.834 36.000 0.00 0.00 0.00 3.55
9095 9438 7.166167 ACGGAGGTAATATGAAATAATCACCC 58.834 38.462 0.00 0.00 41.93 4.61
9103 9446 5.640158 TTGGGACGGAGGTAATATGAAAT 57.360 39.130 0.00 0.00 0.00 2.17
9106 9449 5.640158 AATTTGGGACGGAGGTAATATGA 57.360 39.130 0.00 0.00 0.00 2.15
9109 9452 6.350906 CAAGTAATTTGGGACGGAGGTAATA 58.649 40.000 0.00 0.00 32.95 0.98
9110 9453 5.190677 CAAGTAATTTGGGACGGAGGTAAT 58.809 41.667 0.00 0.00 32.95 1.89
9111 9454 4.581868 CAAGTAATTTGGGACGGAGGTAA 58.418 43.478 0.00 0.00 32.95 2.85
9112 9455 4.210724 CAAGTAATTTGGGACGGAGGTA 57.789 45.455 0.00 0.00 32.95 3.08
9113 9456 3.067684 CAAGTAATTTGGGACGGAGGT 57.932 47.619 0.00 0.00 32.95 3.85
9123 9466 7.118680 ACGTGTTAGGTACATCCAAGTAATTTG 59.881 37.037 0.00 0.00 39.39 2.32
9124 9467 7.163441 ACGTGTTAGGTACATCCAAGTAATTT 58.837 34.615 0.00 0.00 39.39 1.82
9125 9468 6.704310 ACGTGTTAGGTACATCCAAGTAATT 58.296 36.000 0.00 0.00 39.39 1.40
9126 9469 6.290294 ACGTGTTAGGTACATCCAAGTAAT 57.710 37.500 0.00 0.00 39.39 1.89
9127 9470 5.726980 ACGTGTTAGGTACATCCAAGTAA 57.273 39.130 0.00 0.00 39.39 2.24
9128 9471 5.726980 AACGTGTTAGGTACATCCAAGTA 57.273 39.130 0.00 0.00 39.39 2.24
9129 9472 4.612264 AACGTGTTAGGTACATCCAAGT 57.388 40.909 0.00 0.00 39.39 3.16
9130 9473 6.090358 CACTAAACGTGTTAGGTACATCCAAG 59.910 42.308 16.53 0.00 39.39 3.61
9131 9474 5.927689 CACTAAACGTGTTAGGTACATCCAA 59.072 40.000 16.53 0.00 39.39 3.53
9132 9475 5.472148 CACTAAACGTGTTAGGTACATCCA 58.528 41.667 16.53 0.00 39.39 3.41
9152 9495 9.849279 TGTCTAGACACGGGTGTATCTAACACT 62.849 44.444 21.74 0.00 45.87 3.55
9153 9496 7.788585 TGTCTAGACACGGGTGTATCTAACAC 61.789 46.154 21.74 0.00 45.88 3.32
9154 9497 4.637534 GTCTAGACACGGGTGTATCTAACA 59.362 45.833 18.20 0.00 45.05 2.41
9155 9498 4.637534 TGTCTAGACACGGGTGTATCTAAC 59.362 45.833 21.74 2.42 45.05 2.34
9156 9499 4.847198 TGTCTAGACACGGGTGTATCTAA 58.153 43.478 21.74 0.00 45.05 2.10
9157 9500 4.492494 TGTCTAGACACGGGTGTATCTA 57.508 45.455 21.74 2.76 45.05 1.98
9158 9501 3.361281 TGTCTAGACACGGGTGTATCT 57.639 47.619 21.74 1.67 45.05 1.98
9159 9502 4.445452 TTTGTCTAGACACGGGTGTATC 57.555 45.455 25.13 0.00 45.05 2.24
9160 9503 4.710375 AGATTTGTCTAGACACGGGTGTAT 59.290 41.667 25.13 9.69 45.05 2.29
9161 9504 4.084287 AGATTTGTCTAGACACGGGTGTA 58.916 43.478 25.13 6.06 45.05 2.90
9163 9506 3.594603 AGATTTGTCTAGACACGGGTG 57.405 47.619 25.13 0.00 41.67 4.61
9164 9507 4.771054 ACTTAGATTTGTCTAGACACGGGT 59.229 41.667 25.13 12.68 41.67 5.28
9165 9508 5.326200 ACTTAGATTTGTCTAGACACGGG 57.674 43.478 25.13 12.73 41.67 5.28
9166 9509 8.928270 AATTACTTAGATTTGTCTAGACACGG 57.072 34.615 25.13 11.81 41.67 4.94
9176 9519 9.401058 CCTCCATCTCAAATTACTTAGATTTGT 57.599 33.333 8.79 0.00 42.36 2.83
9177 9520 8.844244 CCCTCCATCTCAAATTACTTAGATTTG 58.156 37.037 3.78 3.78 42.84 2.32
9178 9521 8.781951 TCCCTCCATCTCAAATTACTTAGATTT 58.218 33.333 0.00 0.00 0.00 2.17
9179 9522 8.337118 TCCCTCCATCTCAAATTACTTAGATT 57.663 34.615 0.00 0.00 0.00 2.40
9180 9523 7.570607 ACTCCCTCCATCTCAAATTACTTAGAT 59.429 37.037 0.00 0.00 0.00 1.98
9181 9524 6.903534 ACTCCCTCCATCTCAAATTACTTAGA 59.096 38.462 0.00 0.00 0.00 2.10
9182 9525 7.130681 ACTCCCTCCATCTCAAATTACTTAG 57.869 40.000 0.00 0.00 0.00 2.18
9183 9526 8.065627 TCTACTCCCTCCATCTCAAATTACTTA 58.934 37.037 0.00 0.00 0.00 2.24
9184 9527 6.903534 TCTACTCCCTCCATCTCAAATTACTT 59.096 38.462 0.00 0.00 0.00 2.24
9185 9528 6.444704 TCTACTCCCTCCATCTCAAATTACT 58.555 40.000 0.00 0.00 0.00 2.24
9186 9529 6.732896 TCTACTCCCTCCATCTCAAATTAC 57.267 41.667 0.00 0.00 0.00 1.89
9187 9530 7.202130 CCAATCTACTCCCTCCATCTCAAATTA 60.202 40.741 0.00 0.00 0.00 1.40
9188 9531 6.410157 CCAATCTACTCCCTCCATCTCAAATT 60.410 42.308 0.00 0.00 0.00 1.82
9189 9532 5.072872 CCAATCTACTCCCTCCATCTCAAAT 59.927 44.000 0.00 0.00 0.00 2.32
9190 9533 4.410228 CCAATCTACTCCCTCCATCTCAAA 59.590 45.833 0.00 0.00 0.00 2.69
9191 9534 3.969976 CCAATCTACTCCCTCCATCTCAA 59.030 47.826 0.00 0.00 0.00 3.02
9192 9535 3.051803 ACCAATCTACTCCCTCCATCTCA 60.052 47.826 0.00 0.00 0.00 3.27
9193 9536 3.323403 CACCAATCTACTCCCTCCATCTC 59.677 52.174 0.00 0.00 0.00 2.75
9194 9537 3.312890 CACCAATCTACTCCCTCCATCT 58.687 50.000 0.00 0.00 0.00 2.90
9195 9538 2.370189 CCACCAATCTACTCCCTCCATC 59.630 54.545 0.00 0.00 0.00 3.51
9196 9539 2.412591 CCACCAATCTACTCCCTCCAT 58.587 52.381 0.00 0.00 0.00 3.41
9197 9540 1.879575 CCACCAATCTACTCCCTCCA 58.120 55.000 0.00 0.00 0.00 3.86
9198 9541 0.470341 GCCACCAATCTACTCCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
9199 9542 0.105039 CGCCACCAATCTACTCCCTC 59.895 60.000 0.00 0.00 0.00 4.30
9200 9543 1.338136 CCGCCACCAATCTACTCCCT 61.338 60.000 0.00 0.00 0.00 4.20
9201 9544 1.146263 CCGCCACCAATCTACTCCC 59.854 63.158 0.00 0.00 0.00 4.30
9202 9545 1.523938 GCCGCCACCAATCTACTCC 60.524 63.158 0.00 0.00 0.00 3.85
9203 9546 0.750850 TAGCCGCCACCAATCTACTC 59.249 55.000 0.00 0.00 0.00 2.59
9204 9547 1.139058 CTTAGCCGCCACCAATCTACT 59.861 52.381 0.00 0.00 0.00 2.57
9205 9548 1.583054 CTTAGCCGCCACCAATCTAC 58.417 55.000 0.00 0.00 0.00 2.59
9217 9560 4.576463 ACAATATGAAGCTTTCCTTAGCCG 59.424 41.667 0.00 0.00 42.20 5.52
9220 9563 7.630242 TCCAACAATATGAAGCTTTCCTTAG 57.370 36.000 0.00 0.00 32.78 2.18
9235 9578 2.884012 CAGGGCGCAATATCCAACAATA 59.116 45.455 10.83 0.00 0.00 1.90
9241 9584 2.203337 GCCAGGGCGCAATATCCA 60.203 61.111 10.83 0.00 0.00 3.41
9309 9665 7.548097 AGTCTACACCTGTACATTGTCAATAG 58.452 38.462 12.33 6.33 0.00 1.73
9312 9668 5.801531 AGTCTACACCTGTACATTGTCAA 57.198 39.130 12.33 0.00 0.00 3.18
9313 9669 5.105877 GCTAGTCTACACCTGTACATTGTCA 60.106 44.000 12.33 0.93 0.00 3.58
9337 9693 2.481185 ACTGTTTTGGTAATGGTACGCG 59.519 45.455 3.53 3.53 0.00 6.01
9393 9749 7.093322 AGCTGTTCACCATCAGAAATTTATC 57.907 36.000 0.00 0.00 34.02 1.75
9402 9758 6.932356 ACATATTAAGCTGTTCACCATCAG 57.068 37.500 0.00 0.00 35.12 2.90
9409 9765 4.006989 ACGCCAACATATTAAGCTGTTCA 58.993 39.130 0.00 0.00 33.45 3.18
9442 9798 3.374058 ACTTCACTGGTTGTTTCAGTTCG 59.626 43.478 0.00 0.00 42.87 3.95
9455 9811 1.808945 GCAGGACATGAACTTCACTGG 59.191 52.381 0.00 0.00 0.00 4.00
9492 9848 1.301716 GCTGCCGAGAACTTCACCA 60.302 57.895 0.00 0.00 0.00 4.17
9523 9879 1.354031 TCTGCATTGGAGTTGCCCTAA 59.646 47.619 5.02 0.00 39.39 2.69
9524 9880 0.991146 TCTGCATTGGAGTTGCCCTA 59.009 50.000 5.02 0.00 39.39 3.53
9525 9881 0.333993 ATCTGCATTGGAGTTGCCCT 59.666 50.000 5.02 0.00 39.39 5.19
9527 9883 1.133790 GTGATCTGCATTGGAGTTGCC 59.866 52.381 5.02 0.00 39.39 4.52
9528 9884 1.133790 GGTGATCTGCATTGGAGTTGC 59.866 52.381 5.02 0.00 40.55 4.17
9529 9885 2.439409 TGGTGATCTGCATTGGAGTTG 58.561 47.619 5.02 0.00 0.00 3.16
9530 9886 2.885135 TGGTGATCTGCATTGGAGTT 57.115 45.000 5.02 0.00 0.00 3.01
9531 9887 2.885135 TTGGTGATCTGCATTGGAGT 57.115 45.000 5.02 0.00 0.00 3.85
9532 9888 4.430007 CAATTTGGTGATCTGCATTGGAG 58.570 43.478 0.00 0.00 0.00 3.86
9533 9889 3.196039 CCAATTTGGTGATCTGCATTGGA 59.804 43.478 7.31 0.00 42.21 3.53
9534 9890 3.196039 TCCAATTTGGTGATCTGCATTGG 59.804 43.478 14.98 12.70 41.36 3.16
9535 9891 4.459390 TCCAATTTGGTGATCTGCATTG 57.541 40.909 14.98 0.00 39.03 2.82
9536 9892 5.221682 TGTTTCCAATTTGGTGATCTGCATT 60.222 36.000 14.98 0.00 39.03 3.56
9537 9893 4.283978 TGTTTCCAATTTGGTGATCTGCAT 59.716 37.500 14.98 0.00 39.03 3.96
9538 9894 3.640498 TGTTTCCAATTTGGTGATCTGCA 59.360 39.130 14.98 4.05 39.03 4.41
9539 9895 4.255833 TGTTTCCAATTTGGTGATCTGC 57.744 40.909 14.98 1.80 39.03 4.26
9540 9896 6.071784 TCAGATGTTTCCAATTTGGTGATCTG 60.072 38.462 24.26 24.26 39.03 2.90
9541 9897 6.012113 TCAGATGTTTCCAATTTGGTGATCT 58.988 36.000 14.98 13.05 39.03 2.75
9542 9898 6.271488 TCAGATGTTTCCAATTTGGTGATC 57.729 37.500 14.98 11.36 39.03 2.92
9563 9945 9.154632 TGCCCTTATGTACTAGAGATTAATTCA 57.845 33.333 0.00 0.00 0.00 2.57
9597 9979 5.278907 GGTGTGTTTGATTTGATGATCCACA 60.279 40.000 0.00 0.00 0.00 4.17
9613 9995 7.734942 AGATTACATTTCATTTGGGTGTGTTT 58.265 30.769 0.00 0.00 0.00 2.83
9650 10032 1.353103 GATCCGCGTGAATTGCCTG 59.647 57.895 4.92 0.00 0.00 4.85
9651 10033 1.078497 TGATCCGCGTGAATTGCCT 60.078 52.632 4.92 0.00 0.00 4.75
9661 10043 0.652592 GTCAGATTTGGTGATCCGCG 59.347 55.000 0.00 0.00 36.30 6.46
9680 10062 2.350498 CCGCGTAAGTTTCCCTTATGTG 59.650 50.000 4.92 7.54 46.11 3.21
9690 10072 1.274167 TCTGGTGATCCGCGTAAGTTT 59.726 47.619 4.92 0.00 41.68 2.66
9699 10083 0.249073 GTGTCCGATCTGGTGATCCG 60.249 60.000 3.97 0.00 44.61 4.18
9706 10090 2.259618 CGTTTAGTGTGTCCGATCTGG 58.740 52.381 0.00 0.00 40.09 3.86
9709 10093 2.257034 GGACGTTTAGTGTGTCCGATC 58.743 52.381 0.00 0.00 42.42 3.69
9714 10098 2.124011 TCGTGGACGTTTAGTGTGTC 57.876 50.000 0.00 0.00 40.80 3.67
9733 10117 2.987821 CCGTTTGTTTTTGGAACGTGTT 59.012 40.909 7.03 0.00 43.20 3.32
9737 10121 2.864968 TGTCCGTTTGTTTTTGGAACG 58.135 42.857 0.00 0.00 44.03 3.95
9743 10127 8.407064 TGATGTTTAGTATGTCCGTTTGTTTTT 58.593 29.630 0.00 0.00 0.00 1.94
9766 10154 8.671921 CAACTATTTTTAGATGTGTCTGCTGAT 58.328 33.333 0.00 0.00 35.87 2.90
9769 10157 6.942576 ACCAACTATTTTTAGATGTGTCTGCT 59.057 34.615 0.00 0.00 35.87 4.24
9787 10175 4.958509 TGTTTGAACGTATCCACCAACTA 58.041 39.130 0.00 0.00 0.00 2.24
9794 10182 3.249799 CAGCTGTTGTTTGAACGTATCCA 59.750 43.478 5.25 0.00 0.00 3.41
9798 10186 2.353269 CACCAGCTGTTGTTTGAACGTA 59.647 45.455 13.81 0.00 0.00 3.57
9801 10189 1.202405 CCCACCAGCTGTTGTTTGAAC 60.202 52.381 13.81 0.00 0.00 3.18
9802 10190 1.110442 CCCACCAGCTGTTGTTTGAA 58.890 50.000 13.81 0.00 0.00 2.69
9804 10192 1.067916 GCCCACCAGCTGTTGTTTG 59.932 57.895 13.81 0.66 0.00 2.93
9805 10193 2.489275 CGCCCACCAGCTGTTGTTT 61.489 57.895 13.81 0.00 0.00 2.83
9806 10194 2.906897 CGCCCACCAGCTGTTGTT 60.907 61.111 13.81 0.00 0.00 2.83
9821 10210 2.840752 GCGTCTGAAAAATAAAGAGCGC 59.159 45.455 0.00 0.00 35.24 5.92
9822 10211 4.327854 AGCGTCTGAAAAATAAAGAGCG 57.672 40.909 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.