Multiple sequence alignment - TraesCS4D01G184900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G184900 chr4D 100.000 3155 0 0 1 3155 323099111 323095957 0.000000e+00 5827.0
1 TraesCS4D01G184900 chr4A 92.565 1762 60 24 300 2053 149045974 149047672 0.000000e+00 2462.0
2 TraesCS4D01G184900 chr4A 88.377 456 37 6 1 442 149045563 149046016 4.630000e-148 534.0
3 TraesCS4D01G184900 chr4A 86.651 427 29 9 2056 2464 149048807 149049223 6.210000e-122 448.0
4 TraesCS4D01G184900 chr4A 84.894 331 41 4 2833 3155 149049437 149049766 3.030000e-85 326.0
5 TraesCS4D01G184900 chr4A 90.400 125 8 2 2459 2580 149049323 149049446 9.060000e-36 161.0
6 TraesCS4D01G184900 chr4B 95.130 1540 44 15 650 2168 403254853 403253324 0.000000e+00 2399.0
7 TraesCS4D01G184900 chr4B 86.571 700 52 13 1 693 403255414 403254750 0.000000e+00 734.0
8 TraesCS4D01G184900 chr4B 90.545 275 12 11 2166 2428 403253200 403252928 5.010000e-93 351.0
9 TraesCS4D01G184900 chr4B 91.339 127 11 0 2454 2580 403252577 403252451 1.160000e-39 174.0
10 TraesCS4D01G184900 chr6A 87.611 1687 123 38 945 2580 60973402 60971751 0.000000e+00 1879.0
11 TraesCS4D01G184900 chr6A 89.286 1288 99 19 1159 2428 603249193 603250459 0.000000e+00 1578.0
12 TraesCS4D01G184900 chr6B 91.220 1230 77 20 945 2163 694258777 694259986 0.000000e+00 1644.0
13 TraesCS4D01G184900 chr6B 84.706 170 24 2 2982 3150 12978150 12978318 5.410000e-38 169.0
14 TraesCS4D01G184900 chr6B 80.233 172 32 1 2985 3154 204598187 204598016 9.190000e-26 128.0
15 TraesCS4D01G184900 chr6B 79.891 184 22 10 2255 2428 694260006 694260184 1.540000e-23 121.0
16 TraesCS4D01G184900 chr6B 81.022 137 13 9 2819 2947 694338918 694339049 2.590000e-16 97.1
17 TraesCS4D01G184900 chr6D 95.300 1000 47 0 1159 2158 456540530 456541529 0.000000e+00 1587.0
18 TraesCS4D01G184900 chr6D 86.893 206 17 6 907 1111 456540322 456540518 4.100000e-54 222.0
19 TraesCS4D01G184900 chr6D 82.659 173 30 0 2983 3155 115106735 115106563 1.520000e-33 154.0
20 TraesCS4D01G184900 chr2A 87.194 1390 138 23 953 2329 19164353 19162991 0.000000e+00 1544.0
21 TraesCS4D01G184900 chr2D 86.867 1363 141 26 943 2288 18170159 18168818 0.000000e+00 1491.0
22 TraesCS4D01G184900 chr3B 93.049 1007 64 4 1158 2158 40773329 40774335 0.000000e+00 1467.0
23 TraesCS4D01G184900 chr7D 85.795 176 23 2 2980 3155 421142375 421142202 5.370000e-43 185.0
24 TraesCS4D01G184900 chr7D 85.417 144 21 0 3012 3155 351564574 351564431 1.960000e-32 150.0
25 TraesCS4D01G184900 chr7D 80.392 153 30 0 2998 3150 623395480 623395328 1.990000e-22 117.0
26 TraesCS4D01G184900 chr7A 88.060 134 14 2 3012 3144 398906763 398906631 1.170000e-34 158.0
27 TraesCS4D01G184900 chr1D 84.138 145 23 0 3011 3155 477275470 477275614 1.180000e-29 141.0
28 TraesCS4D01G184900 chr1D 89.333 75 3 3 4 78 46103825 46103756 4.330000e-14 89.8
29 TraesCS4D01G184900 chr5D 78.616 159 32 1 2997 3153 446495059 446494901 1.550000e-18 104.0
30 TraesCS4D01G184900 chr5A 89.333 75 3 3 4 78 705520288 705520219 4.330000e-14 89.8
31 TraesCS4D01G184900 chr3D 91.379 58 5 0 1 58 168503907 168503964 2.610000e-11 80.5
32 TraesCS4D01G184900 chr3A 86.667 75 4 4 4 78 300787681 300787613 9.380000e-11 78.7
33 TraesCS4D01G184900 chr1A 94.000 50 3 0 2731 2780 452288543 452288592 3.370000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G184900 chr4D 323095957 323099111 3154 True 5827.0 5827 100.00000 1 3155 1 chr4D.!!$R1 3154
1 TraesCS4D01G184900 chr4A 149045563 149049766 4203 False 786.2 2462 88.57740 1 3155 5 chr4A.!!$F1 3154
2 TraesCS4D01G184900 chr4B 403252451 403255414 2963 True 914.5 2399 90.89625 1 2580 4 chr4B.!!$R1 2579
3 TraesCS4D01G184900 chr6A 60971751 60973402 1651 True 1879.0 1879 87.61100 945 2580 1 chr6A.!!$R1 1635
4 TraesCS4D01G184900 chr6A 603249193 603250459 1266 False 1578.0 1578 89.28600 1159 2428 1 chr6A.!!$F1 1269
5 TraesCS4D01G184900 chr6B 694258777 694260184 1407 False 882.5 1644 85.55550 945 2428 2 chr6B.!!$F3 1483
6 TraesCS4D01G184900 chr6D 456540322 456541529 1207 False 904.5 1587 91.09650 907 2158 2 chr6D.!!$F1 1251
7 TraesCS4D01G184900 chr2A 19162991 19164353 1362 True 1544.0 1544 87.19400 953 2329 1 chr2A.!!$R1 1376
8 TraesCS4D01G184900 chr2D 18168818 18170159 1341 True 1491.0 1491 86.86700 943 2288 1 chr2D.!!$R1 1345
9 TraesCS4D01G184900 chr3B 40773329 40774335 1006 False 1467.0 1467 93.04900 1158 2158 1 chr3B.!!$F1 1000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 729 0.31179 AAGCGTCCGAAGACACGTAA 59.688 50.0 0.0 0.0 43.73 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 3823 0.329596 CCTGGTCTAGCCTGCCTTTT 59.67 55.0 5.06 0.0 38.35 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 31 7.392113 CCAAGATACTGTAATTTTGTACCCACA 59.608 37.037 0.00 0.00 0.00 4.17
29 32 7.916914 AGATACTGTAATTTTGTACCCACAC 57.083 36.000 0.00 0.00 33.30 3.82
30 33 6.882678 AGATACTGTAATTTTGTACCCACACC 59.117 38.462 0.00 0.00 33.30 4.16
31 34 5.056553 ACTGTAATTTTGTACCCACACCT 57.943 39.130 0.00 0.00 33.30 4.00
32 35 6.190346 ACTGTAATTTTGTACCCACACCTA 57.810 37.500 0.00 0.00 33.30 3.08
33 36 6.786122 ACTGTAATTTTGTACCCACACCTAT 58.214 36.000 0.00 0.00 33.30 2.57
34 37 7.235804 ACTGTAATTTTGTACCCACACCTATT 58.764 34.615 0.00 0.00 33.30 1.73
58 61 5.105877 TGACAATGTACAGGTGTAGACTAGC 60.106 44.000 13.41 2.77 0.00 3.42
114 117 3.745975 TGTTCTATTGTTTGACTGCGGAG 59.254 43.478 0.85 0.85 0.00 4.63
123 126 5.938322 TGTTTGACTGCGGAGATAAATTTC 58.062 37.500 12.26 0.00 0.00 2.17
130 133 4.780815 TGCGGAGATAAATTTCTGATGGT 58.219 39.130 0.00 0.00 0.00 3.55
163 166 5.751243 ATATGTTGGCGTTTGAGATTACC 57.249 39.130 0.00 0.00 0.00 2.85
176 179 5.917541 TGAGATTACCGAACTGAAACAAC 57.082 39.130 0.00 0.00 0.00 3.32
213 216 5.221722 TGTCCTGCTCATTCTACTGTTCTTT 60.222 40.000 0.00 0.00 0.00 2.52
244 247 1.647545 CGGCAGCGTGTCCAAATGAT 61.648 55.000 0.00 0.00 0.00 2.45
245 248 0.527565 GGCAGCGTGTCCAAATGATT 59.472 50.000 0.00 0.00 0.00 2.57
262 276 2.291475 TGATTAGGGCAACTCCAATGCA 60.291 45.455 0.00 0.00 45.60 3.96
284 299 5.337009 GCAGATCACCAAATTGGAAACATCT 60.337 40.000 20.25 14.56 40.96 2.90
311 326 9.425577 GAATTAATCTCTAGTACATAAGGGCAC 57.574 37.037 0.00 0.00 0.00 5.01
401 507 0.652592 CGCGGATCACCAAATCTGAC 59.347 55.000 0.00 0.00 34.50 3.51
411 517 4.288366 TCACCAAATCTGACACATAAGGGA 59.712 41.667 0.00 0.00 0.00 4.20
418 524 7.923414 AATCTGACACATAAGGGAAACTTAC 57.077 36.000 0.00 0.00 44.04 2.34
427 533 1.004595 GGGAAACTTACGCGGATCAC 58.995 55.000 12.47 0.00 0.00 3.06
430 536 1.659098 GAAACTTACGCGGATCACCAG 59.341 52.381 12.47 0.00 35.59 4.00
454 560 1.269206 GGACACACTAAACGTCCACGA 60.269 52.381 6.03 0.00 46.98 4.35
487 600 6.973474 CCAAAAACAAACGGACATACTAAACA 59.027 34.615 0.00 0.00 0.00 2.83
490 603 7.499321 AAACAAACGGACATACTAAACATCA 57.501 32.000 0.00 0.00 0.00 3.07
519 632 8.109634 AGACACATCTAAAAATAGTTGGTGGAT 58.890 33.333 0.00 0.00 31.46 3.41
526 640 8.095792 TCTAAAAATAGTTGGTGGATACGTTCA 58.904 33.333 0.00 0.00 42.51 3.18
529 643 6.490566 AATAGTTGGTGGATACGTTCAAAC 57.509 37.500 0.00 0.00 42.51 2.93
542 656 1.110442 TTCAAACAACAGCTGGTGGG 58.890 50.000 33.95 22.54 36.97 4.61
558 672 2.230266 GGTGGGCGCTCTTTATTTTTCA 59.770 45.455 9.62 0.00 0.00 2.69
560 674 3.190535 GTGGGCGCTCTTTATTTTTCAGA 59.809 43.478 9.62 0.00 0.00 3.27
561 675 3.190535 TGGGCGCTCTTTATTTTTCAGAC 59.809 43.478 9.62 0.00 0.00 3.51
562 676 3.417185 GGCGCTCTTTATTTTTCAGACG 58.583 45.455 7.64 0.00 0.00 4.18
563 677 2.840752 GCGCTCTTTATTTTTCAGACGC 59.159 45.455 0.00 0.00 33.35 5.19
564 678 3.424962 GCGCTCTTTATTTTTCAGACGCT 60.425 43.478 0.00 0.00 35.77 5.07
565 679 4.712763 CGCTCTTTATTTTTCAGACGCTT 58.287 39.130 0.00 0.00 0.00 4.68
566 680 5.670341 GCGCTCTTTATTTTTCAGACGCTTA 60.670 40.000 0.00 0.00 35.77 3.09
567 681 5.954349 CGCTCTTTATTTTTCAGACGCTTAG 59.046 40.000 0.00 0.00 0.00 2.18
568 682 6.401153 CGCTCTTTATTTTTCAGACGCTTAGT 60.401 38.462 0.00 0.00 0.00 2.24
569 683 7.201410 CGCTCTTTATTTTTCAGACGCTTAGTA 60.201 37.037 0.00 0.00 0.00 1.82
570 684 8.440833 GCTCTTTATTTTTCAGACGCTTAGTAA 58.559 33.333 0.00 0.00 0.00 2.24
571 685 9.742552 CTCTTTATTTTTCAGACGCTTAGTAAC 57.257 33.333 0.00 0.00 0.00 2.50
572 686 9.485206 TCTTTATTTTTCAGACGCTTAGTAACT 57.515 29.630 0.00 0.00 0.00 2.24
591 728 1.129251 CTAAGCGTCCGAAGACACGTA 59.871 52.381 0.00 0.00 43.73 3.57
592 729 0.311790 AAGCGTCCGAAGACACGTAA 59.688 50.000 0.00 0.00 43.73 3.18
652 789 0.893727 AAATGGCCGTGAACAGGTCC 60.894 55.000 0.00 0.00 30.98 4.46
658 795 1.535226 GCCGTGAACAGGTCCAAAAAC 60.535 52.381 0.00 0.00 0.00 2.43
671 808 1.555477 CAAAAACAGTTGGTGGACGC 58.445 50.000 0.00 0.00 0.00 5.19
681 818 4.023193 CAGTTGGTGGACGCTCTTTATTTT 60.023 41.667 0.00 0.00 0.00 1.82
706 843 2.741517 CACACTAATGCGAACACATCCA 59.258 45.455 0.00 0.00 0.00 3.41
709 846 4.277174 ACACTAATGCGAACACATCCAAAA 59.723 37.500 0.00 0.00 0.00 2.44
726 864 1.166531 AAAACAGCTGGTGGACGCTC 61.167 55.000 19.93 0.00 33.45 5.03
774 912 4.499188 CGTGAACACTCAGTACTTTCTCCA 60.499 45.833 0.00 0.00 30.14 3.86
1040 1200 2.350293 CCATCGATGAGTGCTCTAGACG 60.350 54.545 26.86 1.02 0.00 4.18
1041 1201 1.300481 TCGATGAGTGCTCTAGACGG 58.700 55.000 0.68 0.00 0.00 4.79
1042 1202 0.317436 CGATGAGTGCTCTAGACGGC 60.317 60.000 0.68 0.00 0.00 5.68
1043 1203 0.741326 GATGAGTGCTCTAGACGGCA 59.259 55.000 2.67 2.67 36.01 5.69
2199 3661 2.885164 CGTGCGCGGTCATCATCA 60.885 61.111 12.87 0.00 0.00 3.07
2212 3674 0.536724 ATCATCAGTACGTGGCTGCA 59.463 50.000 14.58 6.76 34.21 4.41
2233 3700 1.548973 GATCGCAGGCAATCGTACGG 61.549 60.000 16.52 0.00 0.00 4.02
2333 3822 3.314763 CAAGCGCATGTCTTGTCTATG 57.685 47.619 11.47 0.00 36.93 2.23
2334 3823 2.931969 CAAGCGCATGTCTTGTCTATGA 59.068 45.455 11.47 0.00 36.93 2.15
2359 3856 2.043227 GCAGGCTAGACCAGGATAGTT 58.957 52.381 0.00 0.00 43.14 2.24
2369 3866 3.690460 ACCAGGATAGTTTGCCAAGAAG 58.310 45.455 0.00 0.00 0.00 2.85
2497 4359 4.816392 TGTCAAGTTGCTCGCTAATTCTA 58.184 39.130 0.00 0.00 0.00 2.10
2541 4406 0.179000 ACCTCTGAATCCGTCCATGC 59.821 55.000 0.00 0.00 0.00 4.06
2544 4409 0.911769 TCTGAATCCGTCCATGCCTT 59.088 50.000 0.00 0.00 0.00 4.35
2571 4436 1.279271 CCTCGTCAGGGGATCAACTTT 59.721 52.381 0.00 0.00 41.93 2.66
2580 4445 6.603201 GTCAGGGGATCAACTTTATGATTTCA 59.397 38.462 0.00 0.00 40.08 2.69
2581 4446 7.122650 GTCAGGGGATCAACTTTATGATTTCAA 59.877 37.037 0.00 0.00 40.08 2.69
2582 4447 7.673504 TCAGGGGATCAACTTTATGATTTCAAA 59.326 33.333 0.00 0.00 40.08 2.69
2583 4448 8.313292 CAGGGGATCAACTTTATGATTTCAAAA 58.687 33.333 0.00 0.00 40.08 2.44
2584 4449 9.050154 AGGGGATCAACTTTATGATTTCAAAAT 57.950 29.630 0.00 0.00 40.08 1.82
2585 4450 9.671279 GGGGATCAACTTTATGATTTCAAAATT 57.329 29.630 0.00 0.00 40.08 1.82
2587 4452 9.977762 GGATCAACTTTATGATTTCAAAATTGC 57.022 29.630 0.00 0.00 40.08 3.56
2593 4458 9.559958 ACTTTATGATTTCAAAATTGCTAGACG 57.440 29.630 0.00 0.00 0.00 4.18
2594 4459 9.559958 CTTTATGATTTCAAAATTGCTAGACGT 57.440 29.630 0.00 0.00 0.00 4.34
2610 4475 9.836076 TTGCTAGACGTATATGATTATACACAC 57.164 33.333 0.00 0.00 40.07 3.82
2611 4476 9.005777 TGCTAGACGTATATGATTATACACACA 57.994 33.333 0.00 0.00 40.07 3.72
2623 4488 7.896811 TGATTATACACACATCTATGGACTCC 58.103 38.462 0.00 0.00 0.00 3.85
2624 4489 7.730332 TGATTATACACACATCTATGGACTCCT 59.270 37.037 0.00 0.00 0.00 3.69
2625 4490 7.914427 TTATACACACATCTATGGACTCCTT 57.086 36.000 0.00 0.00 0.00 3.36
2626 4491 4.744795 ACACACATCTATGGACTCCTTC 57.255 45.455 0.00 0.00 0.00 3.46
2627 4492 3.452627 ACACACATCTATGGACTCCTTCC 59.547 47.826 0.00 0.00 46.13 3.46
2628 4493 3.708631 CACACATCTATGGACTCCTTCCT 59.291 47.826 0.00 0.00 46.10 3.36
2629 4494 4.895889 CACACATCTATGGACTCCTTCCTA 59.104 45.833 0.00 0.00 46.10 2.94
2630 4495 5.363868 CACACATCTATGGACTCCTTCCTAA 59.636 44.000 0.00 0.00 46.10 2.69
2631 4496 5.364157 ACACATCTATGGACTCCTTCCTAAC 59.636 44.000 0.00 0.00 46.10 2.34
2632 4497 4.902448 ACATCTATGGACTCCTTCCTAACC 59.098 45.833 0.00 0.00 46.10 2.85
2633 4498 4.620086 TCTATGGACTCCTTCCTAACCA 57.380 45.455 0.00 0.00 46.10 3.67
2634 4499 4.955335 TCTATGGACTCCTTCCTAACCAA 58.045 43.478 0.00 0.00 46.10 3.67
2635 4500 4.715297 TCTATGGACTCCTTCCTAACCAAC 59.285 45.833 0.00 0.00 46.10 3.77
2636 4501 2.986050 TGGACTCCTTCCTAACCAACT 58.014 47.619 0.00 0.00 46.10 3.16
2637 4502 4.136341 TGGACTCCTTCCTAACCAACTA 57.864 45.455 0.00 0.00 46.10 2.24
2638 4503 4.495565 TGGACTCCTTCCTAACCAACTAA 58.504 43.478 0.00 0.00 46.10 2.24
2639 4504 4.285260 TGGACTCCTTCCTAACCAACTAAC 59.715 45.833 0.00 0.00 46.10 2.34
2640 4505 4.285260 GGACTCCTTCCTAACCAACTAACA 59.715 45.833 0.00 0.00 41.95 2.41
2641 4506 5.045797 GGACTCCTTCCTAACCAACTAACAT 60.046 44.000 0.00 0.00 41.95 2.71
2642 4507 5.805728 ACTCCTTCCTAACCAACTAACATG 58.194 41.667 0.00 0.00 0.00 3.21
2643 4508 4.585879 TCCTTCCTAACCAACTAACATGC 58.414 43.478 0.00 0.00 0.00 4.06
2644 4509 3.694566 CCTTCCTAACCAACTAACATGCC 59.305 47.826 0.00 0.00 0.00 4.40
2645 4510 3.359695 TCCTAACCAACTAACATGCCC 57.640 47.619 0.00 0.00 0.00 5.36
2646 4511 2.916934 TCCTAACCAACTAACATGCCCT 59.083 45.455 0.00 0.00 0.00 5.19
2647 4512 3.054655 TCCTAACCAACTAACATGCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
2648 4513 2.969821 AACCAACTAACATGCCCTCA 57.030 45.000 0.00 0.00 0.00 3.86
2649 4514 2.200373 ACCAACTAACATGCCCTCAC 57.800 50.000 0.00 0.00 0.00 3.51
2650 4515 1.271926 ACCAACTAACATGCCCTCACC 60.272 52.381 0.00 0.00 0.00 4.02
2651 4516 1.004745 CCAACTAACATGCCCTCACCT 59.995 52.381 0.00 0.00 0.00 4.00
2652 4517 2.086869 CAACTAACATGCCCTCACCTG 58.913 52.381 0.00 0.00 0.00 4.00
2653 4518 1.656587 ACTAACATGCCCTCACCTGA 58.343 50.000 0.00 0.00 0.00 3.86
2654 4519 2.200081 ACTAACATGCCCTCACCTGAT 58.800 47.619 0.00 0.00 0.00 2.90
2655 4520 2.578021 ACTAACATGCCCTCACCTGATT 59.422 45.455 0.00 0.00 0.00 2.57
2656 4521 2.610438 AACATGCCCTCACCTGATTT 57.390 45.000 0.00 0.00 0.00 2.17
2657 4522 2.610438 ACATGCCCTCACCTGATTTT 57.390 45.000 0.00 0.00 0.00 1.82
2658 4523 2.450476 ACATGCCCTCACCTGATTTTC 58.550 47.619 0.00 0.00 0.00 2.29
2659 4524 2.225091 ACATGCCCTCACCTGATTTTCA 60.225 45.455 0.00 0.00 0.00 2.69
2660 4525 2.205022 TGCCCTCACCTGATTTTCAG 57.795 50.000 0.00 0.00 43.91 3.02
2669 4534 1.549203 CTGATTTTCAGGTGGGTGGG 58.451 55.000 0.00 0.00 40.71 4.61
2670 4535 1.075374 CTGATTTTCAGGTGGGTGGGA 59.925 52.381 0.00 0.00 40.71 4.37
2671 4536 1.203001 TGATTTTCAGGTGGGTGGGAC 60.203 52.381 0.00 0.00 0.00 4.46
2672 4537 0.114364 ATTTTCAGGTGGGTGGGACC 59.886 55.000 0.00 0.00 37.60 4.46
2685 4550 3.257133 GGACCCCTCCCACACAAA 58.743 61.111 0.00 0.00 0.00 2.83
2686 4551 1.539665 GGACCCCTCCCACACAAAA 59.460 57.895 0.00 0.00 0.00 2.44
2687 4552 0.105913 GGACCCCTCCCACACAAAAA 60.106 55.000 0.00 0.00 0.00 1.94
2688 4553 1.037493 GACCCCTCCCACACAAAAAC 58.963 55.000 0.00 0.00 0.00 2.43
2689 4554 0.397957 ACCCCTCCCACACAAAAACC 60.398 55.000 0.00 0.00 0.00 3.27
2690 4555 1.118965 CCCCTCCCACACAAAAACCC 61.119 60.000 0.00 0.00 0.00 4.11
2691 4556 0.397816 CCCTCCCACACAAAAACCCA 60.398 55.000 0.00 0.00 0.00 4.51
2692 4557 1.490574 CCTCCCACACAAAAACCCAA 58.509 50.000 0.00 0.00 0.00 4.12
2693 4558 1.138069 CCTCCCACACAAAAACCCAAC 59.862 52.381 0.00 0.00 0.00 3.77
2694 4559 2.107366 CTCCCACACAAAAACCCAACT 58.893 47.619 0.00 0.00 0.00 3.16
2695 4560 3.292460 CTCCCACACAAAAACCCAACTA 58.708 45.455 0.00 0.00 0.00 2.24
2696 4561 3.702045 CTCCCACACAAAAACCCAACTAA 59.298 43.478 0.00 0.00 0.00 2.24
2697 4562 4.094476 TCCCACACAAAAACCCAACTAAA 58.906 39.130 0.00 0.00 0.00 1.85
2698 4563 4.081586 TCCCACACAAAAACCCAACTAAAC 60.082 41.667 0.00 0.00 0.00 2.01
2699 4564 4.322801 CCCACACAAAAACCCAACTAAACA 60.323 41.667 0.00 0.00 0.00 2.83
2700 4565 5.423886 CCACACAAAAACCCAACTAAACAT 58.576 37.500 0.00 0.00 0.00 2.71
2701 4566 5.293079 CCACACAAAAACCCAACTAAACATG 59.707 40.000 0.00 0.00 0.00 3.21
2702 4567 4.873259 ACACAAAAACCCAACTAAACATGC 59.127 37.500 0.00 0.00 0.00 4.06
2703 4568 4.272261 CACAAAAACCCAACTAAACATGCC 59.728 41.667 0.00 0.00 0.00 4.40
2704 4569 3.762407 AAAACCCAACTAAACATGCCC 57.238 42.857 0.00 0.00 0.00 5.36
2705 4570 1.639722 AACCCAACTAAACATGCCCC 58.360 50.000 0.00 0.00 0.00 5.80
2706 4571 0.252057 ACCCAACTAAACATGCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
2724 4589 2.273776 CCCCCACACACACACACA 59.726 61.111 0.00 0.00 0.00 3.72
2725 4590 2.118404 CCCCCACACACACACACAC 61.118 63.158 0.00 0.00 0.00 3.82
2726 4591 1.377856 CCCCACACACACACACACA 60.378 57.895 0.00 0.00 0.00 3.72
2727 4592 1.653094 CCCCACACACACACACACAC 61.653 60.000 0.00 0.00 0.00 3.82
2728 4593 1.423450 CCACACACACACACACACG 59.577 57.895 0.00 0.00 0.00 4.49
2729 4594 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
2730 4595 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
2731 4596 1.024046 ACACACACACACACACGCAT 61.024 50.000 0.00 0.00 0.00 4.73
2732 4597 0.098552 CACACACACACACACGCATT 59.901 50.000 0.00 0.00 0.00 3.56
2733 4598 0.808125 ACACACACACACACGCATTT 59.192 45.000 0.00 0.00 0.00 2.32
2734 4599 1.201181 ACACACACACACACGCATTTT 59.799 42.857 0.00 0.00 0.00 1.82
2735 4600 1.845568 CACACACACACACGCATTTTC 59.154 47.619 0.00 0.00 0.00 2.29
2736 4601 1.470494 ACACACACACACGCATTTTCA 59.530 42.857 0.00 0.00 0.00 2.69
2737 4602 2.110990 CACACACACACGCATTTTCAG 58.889 47.619 0.00 0.00 0.00 3.02
2738 4603 1.065401 ACACACACACGCATTTTCAGG 59.935 47.619 0.00 0.00 0.00 3.86
2739 4604 1.065401 CACACACACGCATTTTCAGGT 59.935 47.619 0.00 0.00 0.00 4.00
2740 4605 1.065401 ACACACACGCATTTTCAGGTG 59.935 47.619 0.00 0.00 36.50 4.00
2741 4606 0.667993 ACACACGCATTTTCAGGTGG 59.332 50.000 0.00 0.00 34.78 4.61
2742 4607 0.950836 CACACGCATTTTCAGGTGGA 59.049 50.000 0.00 0.00 34.78 4.02
2743 4608 1.541147 CACACGCATTTTCAGGTGGAT 59.459 47.619 0.00 0.00 34.78 3.41
2744 4609 1.541147 ACACGCATTTTCAGGTGGATG 59.459 47.619 0.00 0.00 34.78 3.51
2745 4610 1.135315 CACGCATTTTCAGGTGGATGG 60.135 52.381 0.00 0.00 0.00 3.51
2746 4611 0.457035 CGCATTTTCAGGTGGATGGG 59.543 55.000 0.00 0.00 0.00 4.00
2747 4612 0.826062 GCATTTTCAGGTGGATGGGG 59.174 55.000 0.00 0.00 0.00 4.96
2748 4613 0.826062 CATTTTCAGGTGGATGGGGC 59.174 55.000 0.00 0.00 0.00 5.80
2749 4614 0.325577 ATTTTCAGGTGGATGGGGCC 60.326 55.000 0.00 0.00 0.00 5.80
2750 4615 2.454459 TTTTCAGGTGGATGGGGCCC 62.454 60.000 18.17 18.17 0.00 5.80
2764 4629 4.382541 GCCCCTCCCACCCCTTTG 62.383 72.222 0.00 0.00 0.00 2.77
2765 4630 2.863988 CCCCTCCCACCCCTTTGT 60.864 66.667 0.00 0.00 0.00 2.83
2766 4631 2.478803 CCCCTCCCACCCCTTTGTT 61.479 63.158 0.00 0.00 0.00 2.83
2767 4632 1.076727 CCCTCCCACCCCTTTGTTC 59.923 63.158 0.00 0.00 0.00 3.18
2768 4633 1.725169 CCCTCCCACCCCTTTGTTCA 61.725 60.000 0.00 0.00 0.00 3.18
2769 4634 0.187361 CCTCCCACCCCTTTGTTCAA 59.813 55.000 0.00 0.00 0.00 2.69
2770 4635 1.203174 CCTCCCACCCCTTTGTTCAAT 60.203 52.381 0.00 0.00 0.00 2.57
2771 4636 2.171003 CTCCCACCCCTTTGTTCAATC 58.829 52.381 0.00 0.00 0.00 2.67
2772 4637 1.501170 TCCCACCCCTTTGTTCAATCA 59.499 47.619 0.00 0.00 0.00 2.57
2773 4638 2.111613 TCCCACCCCTTTGTTCAATCAT 59.888 45.455 0.00 0.00 0.00 2.45
2774 4639 3.335183 TCCCACCCCTTTGTTCAATCATA 59.665 43.478 0.00 0.00 0.00 2.15
2775 4640 4.093011 CCCACCCCTTTGTTCAATCATAA 58.907 43.478 0.00 0.00 0.00 1.90
2776 4641 4.716287 CCCACCCCTTTGTTCAATCATAAT 59.284 41.667 0.00 0.00 0.00 1.28
2777 4642 5.189539 CCCACCCCTTTGTTCAATCATAATT 59.810 40.000 0.00 0.00 0.00 1.40
2778 4643 6.296374 CCCACCCCTTTGTTCAATCATAATTT 60.296 38.462 0.00 0.00 0.00 1.82
2779 4644 6.594937 CCACCCCTTTGTTCAATCATAATTTG 59.405 38.462 0.00 0.00 0.00 2.32
2780 4645 6.594937 CACCCCTTTGTTCAATCATAATTTGG 59.405 38.462 0.00 0.00 0.00 3.28
2781 4646 5.585844 CCCCTTTGTTCAATCATAATTTGGC 59.414 40.000 0.00 0.00 0.00 4.52
2782 4647 6.171921 CCCTTTGTTCAATCATAATTTGGCA 58.828 36.000 0.00 0.00 0.00 4.92
2783 4648 6.314400 CCCTTTGTTCAATCATAATTTGGCAG 59.686 38.462 0.00 0.00 0.00 4.85
2784 4649 6.875195 CCTTTGTTCAATCATAATTTGGCAGT 59.125 34.615 0.00 0.00 0.00 4.40
2785 4650 7.388500 CCTTTGTTCAATCATAATTTGGCAGTT 59.612 33.333 0.00 0.00 0.00 3.16
2786 4651 7.887996 TTGTTCAATCATAATTTGGCAGTTC 57.112 32.000 0.00 0.00 0.00 3.01
2787 4652 6.990798 TGTTCAATCATAATTTGGCAGTTCA 58.009 32.000 0.00 0.00 0.00 3.18
2788 4653 7.440198 TGTTCAATCATAATTTGGCAGTTCAA 58.560 30.769 0.00 0.00 0.00 2.69
2789 4654 7.930325 TGTTCAATCATAATTTGGCAGTTCAAA 59.070 29.630 0.00 0.00 40.37 2.69
2790 4655 7.887996 TCAATCATAATTTGGCAGTTCAAAC 57.112 32.000 0.00 0.00 39.13 2.93
2791 4656 7.440198 TCAATCATAATTTGGCAGTTCAAACA 58.560 30.769 0.00 0.00 39.13 2.83
2792 4657 7.384660 TCAATCATAATTTGGCAGTTCAAACAC 59.615 33.333 0.00 0.00 39.13 3.32
2793 4658 6.154203 TCATAATTTGGCAGTTCAAACACA 57.846 33.333 0.00 0.00 39.13 3.72
2794 4659 5.982516 TCATAATTTGGCAGTTCAAACACAC 59.017 36.000 0.00 0.00 39.13 3.82
2795 4660 2.663826 TTTGGCAGTTCAAACACACC 57.336 45.000 0.00 0.00 32.39 4.16
2796 4661 0.820871 TTGGCAGTTCAAACACACCC 59.179 50.000 0.00 0.00 0.00 4.61
2797 4662 1.040339 TGGCAGTTCAAACACACCCC 61.040 55.000 0.00 0.00 0.00 4.95
2798 4663 1.358759 GCAGTTCAAACACACCCCG 59.641 57.895 0.00 0.00 0.00 5.73
2799 4664 1.381165 GCAGTTCAAACACACCCCGT 61.381 55.000 0.00 0.00 0.00 5.28
2800 4665 1.956297 CAGTTCAAACACACCCCGTA 58.044 50.000 0.00 0.00 0.00 4.02
2801 4666 2.290464 CAGTTCAAACACACCCCGTAA 58.710 47.619 0.00 0.00 0.00 3.18
2802 4667 2.683867 CAGTTCAAACACACCCCGTAAA 59.316 45.455 0.00 0.00 0.00 2.01
2803 4668 3.128938 CAGTTCAAACACACCCCGTAAAA 59.871 43.478 0.00 0.00 0.00 1.52
2804 4669 3.955551 AGTTCAAACACACCCCGTAAAAT 59.044 39.130 0.00 0.00 0.00 1.82
2805 4670 3.992260 TCAAACACACCCCGTAAAATG 57.008 42.857 0.00 0.00 0.00 2.32
2806 4671 2.034812 TCAAACACACCCCGTAAAATGC 59.965 45.455 0.00 0.00 0.00 3.56
2807 4672 0.963225 AACACACCCCGTAAAATGCC 59.037 50.000 0.00 0.00 0.00 4.40
2808 4673 1.238625 ACACACCCCGTAAAATGCCG 61.239 55.000 0.00 0.00 0.00 5.69
2809 4674 1.073548 ACACCCCGTAAAATGCCGT 59.926 52.632 0.00 0.00 0.00 5.68
2810 4675 0.324285 ACACCCCGTAAAATGCCGTA 59.676 50.000 0.00 0.00 0.00 4.02
2811 4676 1.271271 ACACCCCGTAAAATGCCGTAA 60.271 47.619 0.00 0.00 0.00 3.18
2812 4677 1.811359 CACCCCGTAAAATGCCGTAAA 59.189 47.619 0.00 0.00 0.00 2.01
2813 4678 2.086094 ACCCCGTAAAATGCCGTAAAG 58.914 47.619 0.00 0.00 0.00 1.85
2814 4679 1.402613 CCCCGTAAAATGCCGTAAAGG 59.597 52.381 0.00 0.00 44.97 3.11
2815 4680 2.086094 CCCGTAAAATGCCGTAAAGGT 58.914 47.619 0.00 0.00 43.70 3.50
2816 4681 2.488937 CCCGTAAAATGCCGTAAAGGTT 59.511 45.455 0.00 0.00 43.70 3.50
2817 4682 3.426560 CCCGTAAAATGCCGTAAAGGTTC 60.427 47.826 0.00 0.00 43.70 3.62
2818 4683 3.409949 CGTAAAATGCCGTAAAGGTTCG 58.590 45.455 0.00 0.00 43.70 3.95
2819 4684 3.120580 CGTAAAATGCCGTAAAGGTTCGT 60.121 43.478 0.00 0.00 43.70 3.85
2820 4685 3.547649 AAAATGCCGTAAAGGTTCGTC 57.452 42.857 0.00 0.00 43.70 4.20
2821 4686 1.073177 AATGCCGTAAAGGTTCGTCG 58.927 50.000 0.00 0.00 43.70 5.12
2822 4687 0.244450 ATGCCGTAAAGGTTCGTCGA 59.756 50.000 0.00 0.00 43.70 4.20
2823 4688 0.244450 TGCCGTAAAGGTTCGTCGAT 59.756 50.000 0.00 0.00 43.70 3.59
2824 4689 0.643820 GCCGTAAAGGTTCGTCGATG 59.356 55.000 0.00 0.00 43.70 3.84
2825 4690 1.986698 CCGTAAAGGTTCGTCGATGT 58.013 50.000 4.21 0.00 34.51 3.06
2826 4691 2.731968 GCCGTAAAGGTTCGTCGATGTA 60.732 50.000 4.21 0.00 43.70 2.29
2827 4692 3.103738 CCGTAAAGGTTCGTCGATGTAG 58.896 50.000 4.21 0.00 34.51 2.74
2828 4693 2.529090 CGTAAAGGTTCGTCGATGTAGC 59.471 50.000 4.21 4.87 0.00 3.58
2829 4694 2.736144 AAAGGTTCGTCGATGTAGCA 57.264 45.000 14.63 0.00 0.00 3.49
2830 4695 2.961526 AAGGTTCGTCGATGTAGCAT 57.038 45.000 14.63 1.18 0.00 3.79
2831 4696 4.380841 AAAGGTTCGTCGATGTAGCATA 57.619 40.909 14.63 0.00 0.00 3.14
2832 4697 4.585955 AAGGTTCGTCGATGTAGCATAT 57.414 40.909 14.63 0.00 0.00 1.78
2833 4698 4.162096 AGGTTCGTCGATGTAGCATATC 57.838 45.455 14.63 0.00 0.00 1.63
2834 4699 3.568430 AGGTTCGTCGATGTAGCATATCA 59.432 43.478 14.63 0.00 0.00 2.15
2835 4700 3.914966 GGTTCGTCGATGTAGCATATCAG 59.085 47.826 8.38 0.00 0.00 2.90
2836 4701 4.537965 GTTCGTCGATGTAGCATATCAGT 58.462 43.478 4.21 0.00 0.00 3.41
2837 4702 4.147219 TCGTCGATGTAGCATATCAGTG 57.853 45.455 4.21 0.00 0.00 3.66
2840 4705 3.983988 GTCGATGTAGCATATCAGTGGTG 59.016 47.826 0.00 0.00 0.00 4.17
2847 4712 3.603532 AGCATATCAGTGGTGTCTGTTG 58.396 45.455 0.00 0.00 36.85 3.33
2855 4720 0.036732 TGGTGTCTGTTGGAGCCATC 59.963 55.000 0.00 0.00 0.00 3.51
2857 4722 1.340405 GGTGTCTGTTGGAGCCATCAT 60.340 52.381 1.05 0.00 0.00 2.45
2859 4724 1.629861 TGTCTGTTGGAGCCATCATCA 59.370 47.619 1.05 2.37 0.00 3.07
2866 4731 2.291365 TGGAGCCATCATCATTTGTCG 58.709 47.619 0.00 0.00 0.00 4.35
2874 4739 1.811965 TCATCATTTGTCGGGCACTTG 59.188 47.619 0.00 0.00 0.00 3.16
2875 4740 1.811965 CATCATTTGTCGGGCACTTGA 59.188 47.619 0.00 0.00 0.00 3.02
2876 4741 2.198827 TCATTTGTCGGGCACTTGAT 57.801 45.000 0.00 0.00 0.00 2.57
2907 4774 2.350772 GGAGTGTTTGATGTTGAAGCCG 60.351 50.000 0.00 0.00 0.00 5.52
2910 4777 1.268999 TGTTTGATGTTGAAGCCGTGC 60.269 47.619 0.00 0.00 0.00 5.34
2912 4779 0.592637 TTGATGTTGAAGCCGTGCTG 59.407 50.000 0.00 0.00 39.62 4.41
2923 4790 1.811266 CCGTGCTGAACCTCATCGG 60.811 63.158 0.00 0.00 39.35 4.18
2937 4804 3.689161 CCTCATCGGCATTGTTCACTTTA 59.311 43.478 0.00 0.00 0.00 1.85
2963 4830 4.669318 ACTAGTACGACATGCACACATAC 58.331 43.478 0.00 0.00 33.67 2.39
2965 4832 3.770666 AGTACGACATGCACACATACTC 58.229 45.455 0.00 0.00 33.67 2.59
2972 4839 2.401583 TGCACACATACTCATGGACC 57.598 50.000 0.00 0.00 36.39 4.46
2973 4840 1.065491 TGCACACATACTCATGGACCC 60.065 52.381 0.00 0.00 36.39 4.46
2977 4850 1.757118 CACATACTCATGGACCCGAGT 59.243 52.381 15.78 15.78 44.51 4.18
2978 4851 2.168521 CACATACTCATGGACCCGAGTT 59.831 50.000 16.49 5.06 42.41 3.01
2983 4856 2.100631 CATGGACCCGAGTTCACGC 61.101 63.158 0.00 0.00 33.03 5.34
3004 4877 0.880278 CAGGGTGGTGACGTTGTCTG 60.880 60.000 0.00 0.00 33.15 3.51
3005 4878 1.597027 GGGTGGTGACGTTGTCTGG 60.597 63.158 0.00 0.00 33.15 3.86
3007 4880 2.279851 TGGTGACGTTGTCTGGCG 60.280 61.111 0.00 0.00 33.15 5.69
3012 4885 1.126113 GTGACGTTGTCTGGCGTTATG 59.874 52.381 0.00 0.00 41.70 1.90
3013 4886 0.719465 GACGTTGTCTGGCGTTATGG 59.281 55.000 0.00 0.00 41.70 2.74
3017 4890 0.398696 TTGTCTGGCGTTATGGTGGT 59.601 50.000 0.00 0.00 0.00 4.16
3023 4896 0.461339 GGCGTTATGGTGGTGTCGAT 60.461 55.000 0.00 0.00 0.00 3.59
3026 4899 1.014352 GTTATGGTGGTGTCGATGGC 58.986 55.000 0.00 0.00 0.00 4.40
3052 4925 1.244019 GCCTGGCAAGGTCAATTCGT 61.244 55.000 15.17 0.00 46.43 3.85
3075 4948 2.704190 TCTCTCCTGAAGTTGGGAGT 57.296 50.000 16.51 0.00 46.56 3.85
3076 4949 3.827817 TCTCTCCTGAAGTTGGGAGTA 57.172 47.619 16.51 7.71 46.56 2.59
3089 4962 0.035458 GGGAGTATGGAAGATGGCGG 59.965 60.000 0.00 0.00 0.00 6.13
3090 4963 0.759346 GGAGTATGGAAGATGGCGGT 59.241 55.000 0.00 0.00 0.00 5.68
3099 4972 3.279875 GATGGCGGTGGCGGATTC 61.280 66.667 0.00 0.00 41.24 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 31 5.499004 ACACCTGTACATTGTCAATAGGT 57.501 39.130 10.72 10.72 37.54 3.08
29 32 6.757010 GTCTACACCTGTACATTGTCAATAGG 59.243 42.308 12.33 9.65 0.00 2.57
30 33 7.548097 AGTCTACACCTGTACATTGTCAATAG 58.452 38.462 12.33 6.33 0.00 1.73
31 34 7.476540 AGTCTACACCTGTACATTGTCAATA 57.523 36.000 12.33 0.00 0.00 1.90
32 35 6.360370 AGTCTACACCTGTACATTGTCAAT 57.640 37.500 12.33 0.00 0.00 2.57
33 36 5.801531 AGTCTACACCTGTACATTGTCAA 57.198 39.130 12.33 0.00 0.00 3.18
34 37 5.105877 GCTAGTCTACACCTGTACATTGTCA 60.106 44.000 12.33 0.93 0.00 3.58
58 61 2.481185 ACTGTTTTGGTAATGGTACGCG 59.519 45.455 3.53 3.53 0.00 6.01
114 117 7.093322 AGCTGTTCACCATCAGAAATTTATC 57.907 36.000 0.00 0.00 34.02 1.75
123 126 6.932356 ACATATTAAGCTGTTCACCATCAG 57.068 37.500 0.00 0.00 35.12 2.90
130 133 4.006989 ACGCCAACATATTAAGCTGTTCA 58.993 39.130 0.00 0.00 33.45 3.18
163 166 3.374058 ACTTCACTGGTTGTTTCAGTTCG 59.626 43.478 0.00 0.00 42.87 3.95
176 179 1.808945 GCAGGACATGAACTTCACTGG 59.191 52.381 0.00 0.00 0.00 4.00
213 216 1.301716 GCTGCCGAGAACTTCACCA 60.302 57.895 0.00 0.00 0.00 4.17
244 247 1.354031 TCTGCATTGGAGTTGCCCTAA 59.646 47.619 5.02 0.00 39.39 2.69
245 248 0.991146 TCTGCATTGGAGTTGCCCTA 59.009 50.000 5.02 0.00 39.39 3.53
262 276 6.012113 TCAGATGTTTCCAATTTGGTGATCT 58.988 36.000 14.98 13.05 39.03 2.75
284 299 9.154632 TGCCCTTATGTACTAGAGATTAATTCA 57.845 33.333 0.00 0.00 0.00 2.57
318 333 5.278907 GGTGTGTTTGATTTGATGATCCACA 60.279 40.000 0.00 0.00 0.00 4.17
334 349 7.734942 AGATTACATTTCATTTGGGTGTGTTT 58.265 30.769 0.00 0.00 0.00 2.83
371 477 1.353103 GATCCGCGTGAATTGCCTG 59.647 57.895 4.92 0.00 0.00 4.85
372 478 1.078497 TGATCCGCGTGAATTGCCT 60.078 52.632 4.92 0.00 0.00 4.75
401 507 2.350498 CCGCGTAAGTTTCCCTTATGTG 59.650 50.000 4.92 7.54 46.11 3.21
411 517 1.274167 TCTGGTGATCCGCGTAAGTTT 59.726 47.619 4.92 0.00 41.68 2.66
418 524 2.355126 CCGATCTGGTGATCCGCG 60.355 66.667 0.00 0.00 44.61 6.46
427 533 2.259618 CGTTTAGTGTGTCCGATCTGG 58.740 52.381 0.00 0.00 40.09 3.86
430 536 2.257034 GGACGTTTAGTGTGTCCGATC 58.743 52.381 0.00 0.00 42.42 3.69
454 560 2.987821 CCGTTTGTTTTTGGAACGTGTT 59.012 40.909 7.03 0.00 43.20 3.32
487 600 8.671921 CAACTATTTTTAGATGTGTCTGCTGAT 58.328 33.333 0.00 0.00 35.87 2.90
490 603 6.942576 ACCAACTATTTTTAGATGTGTCTGCT 59.057 34.615 0.00 0.00 35.87 4.24
519 632 2.353269 CACCAGCTGTTGTTTGAACGTA 59.647 45.455 13.81 0.00 0.00 3.57
526 640 2.489275 CGCCCACCAGCTGTTGTTT 61.489 57.895 13.81 0.00 0.00 2.83
542 656 2.840752 GCGTCTGAAAAATAAAGAGCGC 59.159 45.455 0.00 0.00 35.24 5.92
563 677 5.027099 GTCTTCGGACGCTTAGTTACTAAG 58.973 45.833 23.49 23.49 39.49 2.18
564 678 4.974591 GTCTTCGGACGCTTAGTTACTAA 58.025 43.478 4.66 4.66 35.10 2.24
565 679 4.606457 GTCTTCGGACGCTTAGTTACTA 57.394 45.455 0.00 0.00 35.10 1.82
566 680 3.484334 GTCTTCGGACGCTTAGTTACT 57.516 47.619 0.00 0.00 35.10 2.24
652 789 1.134175 AGCGTCCACCAACTGTTTTTG 59.866 47.619 0.00 0.00 0.00 2.44
658 795 2.163818 TAAAGAGCGTCCACCAACTG 57.836 50.000 0.00 0.00 0.00 3.16
671 808 6.032775 CGCATTAGTGTGTGCAAAATAAAGAG 59.967 38.462 0.00 0.00 41.32 2.85
681 818 1.262950 GTGTTCGCATTAGTGTGTGCA 59.737 47.619 0.00 0.00 41.32 4.57
706 843 0.751643 AGCGTCCACCAGCTGTTTTT 60.752 50.000 13.81 0.00 42.82 1.94
709 846 2.031163 GAGCGTCCACCAGCTGTT 59.969 61.111 13.81 0.00 44.69 3.16
726 864 7.433979 GCACGTTTAATTTGTCCGAAATAAAG 58.566 34.615 0.00 0.00 0.00 1.85
890 1035 8.178964 TGGACAGCGTTAATTTTGTATGTATTC 58.821 33.333 0.00 0.00 0.00 1.75
1040 1200 1.339151 GGGTATATGTAGCTGCCTGCC 60.339 57.143 0.00 0.00 44.23 4.85
1041 1201 1.339151 GGGGTATATGTAGCTGCCTGC 60.339 57.143 0.00 0.00 43.29 4.85
1042 1202 1.066858 CGGGGTATATGTAGCTGCCTG 60.067 57.143 0.00 0.00 0.00 4.85
1043 1203 1.267121 CGGGGTATATGTAGCTGCCT 58.733 55.000 0.00 0.00 0.00 4.75
2199 3661 0.528466 CGATCATGCAGCCACGTACT 60.528 55.000 0.00 0.00 0.00 2.73
2212 3674 1.502231 GTACGATTGCCTGCGATCAT 58.498 50.000 17.27 6.67 36.81 2.45
2269 3746 3.621558 TGGGTACAAACAACACATGACA 58.378 40.909 0.00 0.00 0.00 3.58
2329 3818 3.118261 TGGTCTAGCCTGCCTTTTCATAG 60.118 47.826 5.06 0.00 38.35 2.23
2330 3819 2.843730 TGGTCTAGCCTGCCTTTTCATA 59.156 45.455 5.06 0.00 38.35 2.15
2332 3821 1.003580 CTGGTCTAGCCTGCCTTTTCA 59.996 52.381 5.06 0.00 38.35 2.69
2333 3822 1.680249 CCTGGTCTAGCCTGCCTTTTC 60.680 57.143 5.06 0.00 38.35 2.29
2334 3823 0.329596 CCTGGTCTAGCCTGCCTTTT 59.670 55.000 5.06 0.00 38.35 2.27
2369 3866 3.682858 ACACCTACAACGACACATATTGC 59.317 43.478 0.00 0.00 0.00 3.56
2497 4359 0.887933 GCAAACATGGGTCATCCGTT 59.112 50.000 0.00 0.00 38.76 4.44
2584 4449 9.836076 GTGTGTATAATCATATACGTCTAGCAA 57.164 33.333 0.00 0.00 44.56 3.91
2585 4450 9.005777 TGTGTGTATAATCATATACGTCTAGCA 57.994 33.333 0.00 0.00 44.56 3.49
2597 4462 8.535335 GGAGTCCATAGATGTGTGTATAATCAT 58.465 37.037 3.60 0.00 0.00 2.45
2598 4463 7.730332 AGGAGTCCATAGATGTGTGTATAATCA 59.270 37.037 12.86 0.00 0.00 2.57
2599 4464 8.128322 AGGAGTCCATAGATGTGTGTATAATC 57.872 38.462 12.86 0.00 0.00 1.75
2600 4465 8.497910 AAGGAGTCCATAGATGTGTGTATAAT 57.502 34.615 12.86 0.00 0.00 1.28
2601 4466 7.015292 GGAAGGAGTCCATAGATGTGTGTATAA 59.985 40.741 12.86 0.00 46.97 0.98
2602 4467 6.493802 GGAAGGAGTCCATAGATGTGTGTATA 59.506 42.308 12.86 0.00 46.97 1.47
2603 4468 5.305644 GGAAGGAGTCCATAGATGTGTGTAT 59.694 44.000 12.86 0.00 46.97 2.29
2604 4469 4.649674 GGAAGGAGTCCATAGATGTGTGTA 59.350 45.833 12.86 0.00 46.97 2.90
2605 4470 3.452627 GGAAGGAGTCCATAGATGTGTGT 59.547 47.826 12.86 0.00 46.97 3.72
2606 4471 4.065321 GGAAGGAGTCCATAGATGTGTG 57.935 50.000 12.86 0.00 46.97 3.82
2618 4483 5.479124 TGTTAGTTGGTTAGGAAGGAGTC 57.521 43.478 0.00 0.00 0.00 3.36
2619 4484 5.803470 GCATGTTAGTTGGTTAGGAAGGAGT 60.803 44.000 0.00 0.00 0.00 3.85
2620 4485 4.636206 GCATGTTAGTTGGTTAGGAAGGAG 59.364 45.833 0.00 0.00 0.00 3.69
2621 4486 4.566907 GGCATGTTAGTTGGTTAGGAAGGA 60.567 45.833 0.00 0.00 0.00 3.36
2622 4487 3.694566 GGCATGTTAGTTGGTTAGGAAGG 59.305 47.826 0.00 0.00 0.00 3.46
2623 4488 3.694566 GGGCATGTTAGTTGGTTAGGAAG 59.305 47.826 0.00 0.00 0.00 3.46
2624 4489 3.332485 AGGGCATGTTAGTTGGTTAGGAA 59.668 43.478 0.00 0.00 0.00 3.36
2625 4490 2.916934 AGGGCATGTTAGTTGGTTAGGA 59.083 45.455 0.00 0.00 0.00 2.94
2626 4491 3.279434 GAGGGCATGTTAGTTGGTTAGG 58.721 50.000 0.00 0.00 0.00 2.69
2627 4492 3.689649 GTGAGGGCATGTTAGTTGGTTAG 59.310 47.826 0.00 0.00 0.00 2.34
2628 4493 3.560453 GGTGAGGGCATGTTAGTTGGTTA 60.560 47.826 0.00 0.00 0.00 2.85
2629 4494 2.514803 GTGAGGGCATGTTAGTTGGTT 58.485 47.619 0.00 0.00 0.00 3.67
2630 4495 1.271926 GGTGAGGGCATGTTAGTTGGT 60.272 52.381 0.00 0.00 0.00 3.67
2631 4496 1.004745 AGGTGAGGGCATGTTAGTTGG 59.995 52.381 0.00 0.00 0.00 3.77
2632 4497 2.086869 CAGGTGAGGGCATGTTAGTTG 58.913 52.381 0.00 0.00 0.00 3.16
2633 4498 1.985159 TCAGGTGAGGGCATGTTAGTT 59.015 47.619 0.00 0.00 0.00 2.24
2634 4499 1.656587 TCAGGTGAGGGCATGTTAGT 58.343 50.000 0.00 0.00 0.00 2.24
2635 4500 3.287867 AATCAGGTGAGGGCATGTTAG 57.712 47.619 0.00 0.00 0.00 2.34
2636 4501 3.737559 AAATCAGGTGAGGGCATGTTA 57.262 42.857 0.00 0.00 0.00 2.41
2637 4502 2.610438 AAATCAGGTGAGGGCATGTT 57.390 45.000 0.00 0.00 0.00 2.71
2638 4503 2.225091 TGAAAATCAGGTGAGGGCATGT 60.225 45.455 0.00 0.00 0.00 3.21
2639 4504 2.426024 CTGAAAATCAGGTGAGGGCATG 59.574 50.000 0.00 0.00 40.71 4.06
2640 4505 2.731572 CTGAAAATCAGGTGAGGGCAT 58.268 47.619 0.00 0.00 40.71 4.40
2641 4506 2.205022 CTGAAAATCAGGTGAGGGCA 57.795 50.000 0.00 0.00 40.71 5.36
2650 4515 1.075374 TCCCACCCACCTGAAAATCAG 59.925 52.381 0.32 0.32 43.91 2.90
2651 4516 1.153539 TCCCACCCACCTGAAAATCA 58.846 50.000 0.00 0.00 0.00 2.57
2652 4517 1.545841 GTCCCACCCACCTGAAAATC 58.454 55.000 0.00 0.00 0.00 2.17
2653 4518 0.114364 GGTCCCACCCACCTGAAAAT 59.886 55.000 0.00 0.00 30.04 1.82
2654 4519 1.539665 GGTCCCACCCACCTGAAAA 59.460 57.895 0.00 0.00 30.04 2.29
2655 4520 3.257133 GGTCCCACCCACCTGAAA 58.743 61.111 0.00 0.00 30.04 2.69
2668 4533 0.105913 TTTTTGTGTGGGAGGGGTCC 60.106 55.000 0.00 0.00 0.00 4.46
2669 4534 1.037493 GTTTTTGTGTGGGAGGGGTC 58.963 55.000 0.00 0.00 0.00 4.46
2670 4535 0.397957 GGTTTTTGTGTGGGAGGGGT 60.398 55.000 0.00 0.00 0.00 4.95
2671 4536 1.118965 GGGTTTTTGTGTGGGAGGGG 61.119 60.000 0.00 0.00 0.00 4.79
2672 4537 0.397816 TGGGTTTTTGTGTGGGAGGG 60.398 55.000 0.00 0.00 0.00 4.30
2673 4538 1.138069 GTTGGGTTTTTGTGTGGGAGG 59.862 52.381 0.00 0.00 0.00 4.30
2674 4539 2.107366 AGTTGGGTTTTTGTGTGGGAG 58.893 47.619 0.00 0.00 0.00 4.30
2675 4540 2.239681 AGTTGGGTTTTTGTGTGGGA 57.760 45.000 0.00 0.00 0.00 4.37
2676 4541 4.185394 GTTTAGTTGGGTTTTTGTGTGGG 58.815 43.478 0.00 0.00 0.00 4.61
2677 4542 4.822026 TGTTTAGTTGGGTTTTTGTGTGG 58.178 39.130 0.00 0.00 0.00 4.17
2678 4543 5.220567 GCATGTTTAGTTGGGTTTTTGTGTG 60.221 40.000 0.00 0.00 0.00 3.82
2679 4544 4.873259 GCATGTTTAGTTGGGTTTTTGTGT 59.127 37.500 0.00 0.00 0.00 3.72
2680 4545 4.272261 GGCATGTTTAGTTGGGTTTTTGTG 59.728 41.667 0.00 0.00 0.00 3.33
2681 4546 4.447290 GGCATGTTTAGTTGGGTTTTTGT 58.553 39.130 0.00 0.00 0.00 2.83
2682 4547 3.812609 GGGCATGTTTAGTTGGGTTTTTG 59.187 43.478 0.00 0.00 0.00 2.44
2683 4548 3.181449 GGGGCATGTTTAGTTGGGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
2684 4549 2.370519 GGGGCATGTTTAGTTGGGTTTT 59.629 45.455 0.00 0.00 0.00 2.43
2685 4550 1.974957 GGGGCATGTTTAGTTGGGTTT 59.025 47.619 0.00 0.00 0.00 3.27
2686 4551 1.639722 GGGGCATGTTTAGTTGGGTT 58.360 50.000 0.00 0.00 0.00 4.11
2687 4552 0.252057 GGGGGCATGTTTAGTTGGGT 60.252 55.000 0.00 0.00 0.00 4.51
2688 4553 2.590704 GGGGGCATGTTTAGTTGGG 58.409 57.895 0.00 0.00 0.00 4.12
2707 4572 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
2708 4573 1.377856 TGTGTGTGTGTGTGTGGGG 60.378 57.895 0.00 0.00 0.00 4.96
2709 4574 1.800032 GTGTGTGTGTGTGTGTGGG 59.200 57.895 0.00 0.00 0.00 4.61
2710 4575 1.423450 CGTGTGTGTGTGTGTGTGG 59.577 57.895 0.00 0.00 0.00 4.17
2711 4576 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2712 4577 1.024046 ATGCGTGTGTGTGTGTGTGT 61.024 50.000 0.00 0.00 0.00 3.72
2713 4578 0.098552 AATGCGTGTGTGTGTGTGTG 59.901 50.000 0.00 0.00 0.00 3.82
2714 4579 0.808125 AAATGCGTGTGTGTGTGTGT 59.192 45.000 0.00 0.00 0.00 3.72
2715 4580 1.845568 GAAAATGCGTGTGTGTGTGTG 59.154 47.619 0.00 0.00 0.00 3.82
2716 4581 1.470494 TGAAAATGCGTGTGTGTGTGT 59.530 42.857 0.00 0.00 0.00 3.72
2717 4582 2.110990 CTGAAAATGCGTGTGTGTGTG 58.889 47.619 0.00 0.00 0.00 3.82
2718 4583 1.065401 CCTGAAAATGCGTGTGTGTGT 59.935 47.619 0.00 0.00 0.00 3.72
2719 4584 1.065401 ACCTGAAAATGCGTGTGTGTG 59.935 47.619 0.00 0.00 0.00 3.82
2720 4585 1.065401 CACCTGAAAATGCGTGTGTGT 59.935 47.619 0.00 0.00 0.00 3.72
2721 4586 1.600164 CCACCTGAAAATGCGTGTGTG 60.600 52.381 0.00 0.00 0.00 3.82
2722 4587 0.667993 CCACCTGAAAATGCGTGTGT 59.332 50.000 0.00 0.00 0.00 3.72
2723 4588 0.950836 TCCACCTGAAAATGCGTGTG 59.049 50.000 0.00 0.00 0.00 3.82
2724 4589 1.541147 CATCCACCTGAAAATGCGTGT 59.459 47.619 0.00 0.00 0.00 4.49
2725 4590 1.135315 CCATCCACCTGAAAATGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
2726 4591 1.176527 CCATCCACCTGAAAATGCGT 58.823 50.000 0.00 0.00 0.00 5.24
2727 4592 0.457035 CCCATCCACCTGAAAATGCG 59.543 55.000 0.00 0.00 0.00 4.73
2728 4593 0.826062 CCCCATCCACCTGAAAATGC 59.174 55.000 0.00 0.00 0.00 3.56
2729 4594 0.826062 GCCCCATCCACCTGAAAATG 59.174 55.000 0.00 0.00 0.00 2.32
2730 4595 0.325577 GGCCCCATCCACCTGAAAAT 60.326 55.000 0.00 0.00 0.00 1.82
2731 4596 1.078347 GGCCCCATCCACCTGAAAA 59.922 57.895 0.00 0.00 0.00 2.29
2732 4597 2.770130 GGCCCCATCCACCTGAAA 59.230 61.111 0.00 0.00 0.00 2.69
2733 4598 3.346734 GGGCCCCATCCACCTGAA 61.347 66.667 12.23 0.00 0.00 3.02
2747 4612 4.382541 CAAAGGGGTGGGAGGGGC 62.383 72.222 0.00 0.00 0.00 5.80
2748 4613 2.441035 GAACAAAGGGGTGGGAGGGG 62.441 65.000 0.00 0.00 0.00 4.79
2749 4614 1.076727 GAACAAAGGGGTGGGAGGG 59.923 63.158 0.00 0.00 0.00 4.30
2750 4615 0.187361 TTGAACAAAGGGGTGGGAGG 59.813 55.000 0.00 0.00 0.00 4.30
2751 4616 2.171003 GATTGAACAAAGGGGTGGGAG 58.829 52.381 0.00 0.00 0.00 4.30
2752 4617 1.501170 TGATTGAACAAAGGGGTGGGA 59.499 47.619 0.00 0.00 0.00 4.37
2753 4618 2.008242 TGATTGAACAAAGGGGTGGG 57.992 50.000 0.00 0.00 0.00 4.61
2754 4619 5.937975 ATTATGATTGAACAAAGGGGTGG 57.062 39.130 0.00 0.00 0.00 4.61
2755 4620 6.594937 CCAAATTATGATTGAACAAAGGGGTG 59.405 38.462 0.00 0.00 0.00 4.61
2756 4621 6.710278 CCAAATTATGATTGAACAAAGGGGT 58.290 36.000 0.00 0.00 0.00 4.95
2757 4622 5.585844 GCCAAATTATGATTGAACAAAGGGG 59.414 40.000 0.00 0.00 0.00 4.79
2758 4623 6.171921 TGCCAAATTATGATTGAACAAAGGG 58.828 36.000 0.00 0.00 0.00 3.95
2759 4624 6.875195 ACTGCCAAATTATGATTGAACAAAGG 59.125 34.615 0.00 0.00 0.00 3.11
2760 4625 7.894376 ACTGCCAAATTATGATTGAACAAAG 57.106 32.000 0.00 0.00 0.00 2.77
2761 4626 7.930325 TGAACTGCCAAATTATGATTGAACAAA 59.070 29.630 0.00 0.00 0.00 2.83
2762 4627 7.440198 TGAACTGCCAAATTATGATTGAACAA 58.560 30.769 0.00 0.00 0.00 2.83
2763 4628 6.990798 TGAACTGCCAAATTATGATTGAACA 58.009 32.000 0.00 0.00 0.00 3.18
2764 4629 7.887996 TTGAACTGCCAAATTATGATTGAAC 57.112 32.000 0.00 0.00 0.00 3.18
2765 4630 7.930325 TGTTTGAACTGCCAAATTATGATTGAA 59.070 29.630 0.00 0.00 38.18 2.69
2766 4631 7.384660 GTGTTTGAACTGCCAAATTATGATTGA 59.615 33.333 0.00 0.00 38.18 2.57
2767 4632 7.171167 TGTGTTTGAACTGCCAAATTATGATTG 59.829 33.333 0.00 0.00 38.18 2.67
2768 4633 7.171337 GTGTGTTTGAACTGCCAAATTATGATT 59.829 33.333 0.00 0.00 38.18 2.57
2769 4634 6.646240 GTGTGTTTGAACTGCCAAATTATGAT 59.354 34.615 0.00 0.00 38.18 2.45
2770 4635 5.982516 GTGTGTTTGAACTGCCAAATTATGA 59.017 36.000 0.00 0.00 38.18 2.15
2771 4636 5.177327 GGTGTGTTTGAACTGCCAAATTATG 59.823 40.000 0.00 0.00 38.18 1.90
2772 4637 5.296748 GGTGTGTTTGAACTGCCAAATTAT 58.703 37.500 0.00 0.00 38.18 1.28
2773 4638 4.442192 GGGTGTGTTTGAACTGCCAAATTA 60.442 41.667 0.00 0.00 38.18 1.40
2774 4639 3.530535 GGTGTGTTTGAACTGCCAAATT 58.469 40.909 0.00 0.00 38.18 1.82
2775 4640 2.158971 GGGTGTGTTTGAACTGCCAAAT 60.159 45.455 0.00 0.00 38.18 2.32
2776 4641 1.205893 GGGTGTGTTTGAACTGCCAAA 59.794 47.619 0.00 0.00 34.03 3.28
2777 4642 0.820871 GGGTGTGTTTGAACTGCCAA 59.179 50.000 0.00 0.00 0.00 4.52
2778 4643 1.040339 GGGGTGTGTTTGAACTGCCA 61.040 55.000 0.00 0.00 0.00 4.92
2779 4644 1.739667 GGGGTGTGTTTGAACTGCC 59.260 57.895 0.00 0.00 0.00 4.85
2780 4645 1.358759 CGGGGTGTGTTTGAACTGC 59.641 57.895 0.00 0.00 0.00 4.40
2781 4646 1.956297 TACGGGGTGTGTTTGAACTG 58.044 50.000 0.00 0.00 0.00 3.16
2782 4647 2.713863 TTACGGGGTGTGTTTGAACT 57.286 45.000 0.00 0.00 0.00 3.01
2783 4648 3.779271 TTTTACGGGGTGTGTTTGAAC 57.221 42.857 0.00 0.00 0.00 3.18
2784 4649 3.491104 GCATTTTACGGGGTGTGTTTGAA 60.491 43.478 0.00 0.00 0.00 2.69
2785 4650 2.034812 GCATTTTACGGGGTGTGTTTGA 59.965 45.455 0.00 0.00 0.00 2.69
2786 4651 2.399448 GCATTTTACGGGGTGTGTTTG 58.601 47.619 0.00 0.00 0.00 2.93
2787 4652 1.341852 GGCATTTTACGGGGTGTGTTT 59.658 47.619 0.00 0.00 0.00 2.83
2788 4653 0.963225 GGCATTTTACGGGGTGTGTT 59.037 50.000 0.00 0.00 0.00 3.32
2789 4654 1.238625 CGGCATTTTACGGGGTGTGT 61.239 55.000 0.00 0.00 0.00 3.72
2790 4655 1.238625 ACGGCATTTTACGGGGTGTG 61.239 55.000 0.00 0.00 0.00 3.82
2791 4656 0.324285 TACGGCATTTTACGGGGTGT 59.676 50.000 0.00 0.00 0.00 4.16
2792 4657 1.451067 TTACGGCATTTTACGGGGTG 58.549 50.000 0.00 0.00 0.00 4.61
2793 4658 2.086094 CTTTACGGCATTTTACGGGGT 58.914 47.619 0.00 0.00 0.00 4.95
2794 4659 1.402613 CCTTTACGGCATTTTACGGGG 59.597 52.381 0.00 0.00 0.00 5.73
2795 4660 2.086094 ACCTTTACGGCATTTTACGGG 58.914 47.619 0.00 0.00 35.61 5.28
2796 4661 3.725600 CGAACCTTTACGGCATTTTACGG 60.726 47.826 0.00 0.00 35.61 4.02
2797 4662 3.120580 ACGAACCTTTACGGCATTTTACG 60.121 43.478 0.00 0.00 35.61 3.18
2798 4663 4.397382 GACGAACCTTTACGGCATTTTAC 58.603 43.478 0.00 0.00 37.49 2.01
2799 4664 3.123284 CGACGAACCTTTACGGCATTTTA 59.877 43.478 0.00 0.00 37.38 1.52
2800 4665 2.096119 CGACGAACCTTTACGGCATTTT 60.096 45.455 0.00 0.00 37.38 1.82
2801 4666 1.461897 CGACGAACCTTTACGGCATTT 59.538 47.619 0.00 0.00 37.38 2.32
2802 4667 1.073177 CGACGAACCTTTACGGCATT 58.927 50.000 0.00 0.00 37.38 3.56
2803 4668 0.244450 TCGACGAACCTTTACGGCAT 59.756 50.000 0.00 0.00 37.38 4.40
2804 4669 0.244450 ATCGACGAACCTTTACGGCA 59.756 50.000 0.00 0.00 37.38 5.69
2805 4670 0.643820 CATCGACGAACCTTTACGGC 59.356 55.000 0.00 0.00 35.61 5.68
2806 4671 1.986698 ACATCGACGAACCTTTACGG 58.013 50.000 0.00 0.00 39.35 4.02
2807 4672 2.529090 GCTACATCGACGAACCTTTACG 59.471 50.000 0.00 0.00 0.00 3.18
2808 4673 3.504863 TGCTACATCGACGAACCTTTAC 58.495 45.455 0.00 0.00 0.00 2.01
2809 4674 3.853831 TGCTACATCGACGAACCTTTA 57.146 42.857 0.00 0.00 0.00 1.85
2810 4675 2.736144 TGCTACATCGACGAACCTTT 57.264 45.000 0.00 0.00 0.00 3.11
2811 4676 2.961526 ATGCTACATCGACGAACCTT 57.038 45.000 0.00 0.00 0.00 3.50
2812 4677 3.568430 TGATATGCTACATCGACGAACCT 59.432 43.478 0.00 0.00 0.00 3.50
2813 4678 3.897325 TGATATGCTACATCGACGAACC 58.103 45.455 0.00 0.00 0.00 3.62
2814 4679 4.380087 CACTGATATGCTACATCGACGAAC 59.620 45.833 0.00 0.00 0.00 3.95
2815 4680 4.537015 CACTGATATGCTACATCGACGAA 58.463 43.478 0.00 0.00 0.00 3.85
2816 4681 3.058224 CCACTGATATGCTACATCGACGA 60.058 47.826 0.00 0.00 0.00 4.20
2817 4682 3.237628 CCACTGATATGCTACATCGACG 58.762 50.000 0.00 0.00 0.00 5.12
2818 4683 3.983988 CACCACTGATATGCTACATCGAC 59.016 47.826 0.00 0.00 0.00 4.20
2819 4684 3.636764 ACACCACTGATATGCTACATCGA 59.363 43.478 0.00 0.00 0.00 3.59
2820 4685 3.982475 ACACCACTGATATGCTACATCG 58.018 45.455 0.00 0.00 0.00 3.84
2821 4686 4.987285 CAGACACCACTGATATGCTACATC 59.013 45.833 0.00 0.00 39.94 3.06
2822 4687 4.406972 ACAGACACCACTGATATGCTACAT 59.593 41.667 0.00 0.00 40.63 2.29
2823 4688 3.769300 ACAGACACCACTGATATGCTACA 59.231 43.478 0.00 0.00 40.63 2.74
2824 4689 4.392921 ACAGACACCACTGATATGCTAC 57.607 45.455 0.00 0.00 40.63 3.58
2825 4690 4.383010 CCAACAGACACCACTGATATGCTA 60.383 45.833 0.00 0.00 40.63 3.49
2826 4691 3.603532 CAACAGACACCACTGATATGCT 58.396 45.455 0.00 0.00 40.63 3.79
2827 4692 2.679837 CCAACAGACACCACTGATATGC 59.320 50.000 0.00 0.00 40.63 3.14
2828 4693 4.186926 CTCCAACAGACACCACTGATATG 58.813 47.826 0.00 0.00 40.63 1.78
2829 4694 3.369892 GCTCCAACAGACACCACTGATAT 60.370 47.826 0.00 0.00 40.63 1.63
2830 4695 2.028112 GCTCCAACAGACACCACTGATA 60.028 50.000 0.00 0.00 40.63 2.15
2831 4696 1.271054 GCTCCAACAGACACCACTGAT 60.271 52.381 0.00 0.00 40.63 2.90
2832 4697 0.106708 GCTCCAACAGACACCACTGA 59.893 55.000 0.00 0.00 40.63 3.41
2833 4698 0.886490 GGCTCCAACAGACACCACTG 60.886 60.000 0.00 0.00 42.78 3.66
2834 4699 1.344953 TGGCTCCAACAGACACCACT 61.345 55.000 0.00 0.00 33.83 4.00
2835 4700 0.250901 ATGGCTCCAACAGACACCAC 60.251 55.000 0.00 0.00 45.94 4.16
2836 4701 0.036732 GATGGCTCCAACAGACACCA 59.963 55.000 0.00 0.00 45.94 4.17
2837 4702 0.036732 TGATGGCTCCAACAGACACC 59.963 55.000 0.00 0.00 45.94 4.16
2840 4705 2.408271 TGATGATGGCTCCAACAGAC 57.592 50.000 5.17 3.08 32.46 3.51
2847 4712 1.605710 CCGACAAATGATGATGGCTCC 59.394 52.381 0.00 0.00 0.00 4.70
2855 4720 1.811965 TCAAGTGCCCGACAAATGATG 59.188 47.619 0.00 0.00 0.00 3.07
2857 4722 2.198827 ATCAAGTGCCCGACAAATGA 57.801 45.000 0.00 0.00 31.76 2.57
2859 4724 2.627699 ACAAATCAAGTGCCCGACAAAT 59.372 40.909 0.00 0.00 0.00 2.32
2866 4731 5.146010 TCCAATTTACAAATCAAGTGCCC 57.854 39.130 0.00 0.00 0.00 5.36
2874 4739 8.816640 ACATCAAACACTCCAATTTACAAATC 57.183 30.769 0.00 0.00 0.00 2.17
2875 4740 9.044150 CAACATCAAACACTCCAATTTACAAAT 57.956 29.630 0.00 0.00 0.00 2.32
2876 4741 8.253810 TCAACATCAAACACTCCAATTTACAAA 58.746 29.630 0.00 0.00 0.00 2.83
2907 4774 0.745845 ATGCCGATGAGGTTCAGCAC 60.746 55.000 0.00 0.00 43.70 4.40
2910 4777 1.742761 ACAATGCCGATGAGGTTCAG 58.257 50.000 0.00 0.00 43.70 3.02
2912 4779 2.083774 TGAACAATGCCGATGAGGTTC 58.916 47.619 0.00 0.00 43.70 3.62
2937 4804 6.628919 TGTGTGCATGTCGTACTAGTATAT 57.371 37.500 5.75 0.00 0.00 0.86
2949 4816 3.310774 GTCCATGAGTATGTGTGCATGTC 59.689 47.826 0.00 0.00 37.11 3.06
2954 4821 1.668419 GGGTCCATGAGTATGTGTGC 58.332 55.000 0.00 0.00 32.21 4.57
2963 4830 0.458543 CGTGAACTCGGGTCCATGAG 60.459 60.000 8.44 8.44 38.21 2.90
2965 4832 2.100631 GCGTGAACTCGGGTCCATG 61.101 63.158 0.00 0.00 0.00 3.66
2983 4856 3.345808 CAACGTCACCACCCTGCG 61.346 66.667 0.00 0.00 0.00 5.18
2995 4868 0.034337 ACCATAACGCCAGACAACGT 59.966 50.000 0.00 0.00 46.07 3.99
2998 4871 0.398696 ACCACCATAACGCCAGACAA 59.601 50.000 0.00 0.00 0.00 3.18
3004 4877 0.461339 ATCGACACCACCATAACGCC 60.461 55.000 0.00 0.00 0.00 5.68
3005 4878 0.650512 CATCGACACCACCATAACGC 59.349 55.000 0.00 0.00 0.00 4.84
3007 4880 1.014352 GCCATCGACACCACCATAAC 58.986 55.000 0.00 0.00 0.00 1.89
3012 4885 1.302511 AACTGCCATCGACACCACC 60.303 57.895 0.00 0.00 0.00 4.61
3013 4886 1.577328 CCAACTGCCATCGACACCAC 61.577 60.000 0.00 0.00 0.00 4.16
3017 4890 2.359850 GCCCAACTGCCATCGACA 60.360 61.111 0.00 0.00 0.00 4.35
3026 4899 2.993264 CCTTGCCAGGCCCAACTG 60.993 66.667 9.64 0.00 38.21 3.16
3038 4911 2.352960 GAGATCCACGAATTGACCTTGC 59.647 50.000 0.00 0.00 0.00 4.01
3043 4916 3.131223 TCAGGAGAGATCCACGAATTGAC 59.869 47.826 0.00 0.00 0.00 3.18
3052 4925 2.191400 CCCAACTTCAGGAGAGATCCA 58.809 52.381 0.00 0.00 0.00 3.41
3074 4947 1.166531 GCCACCGCCATCTTCCATAC 61.167 60.000 0.00 0.00 0.00 2.39
3075 4948 1.148273 GCCACCGCCATCTTCCATA 59.852 57.895 0.00 0.00 0.00 2.74
3076 4949 2.124151 GCCACCGCCATCTTCCAT 60.124 61.111 0.00 0.00 0.00 3.41
3089 4962 2.892425 CGCTCCAGAATCCGCCAC 60.892 66.667 0.00 0.00 0.00 5.01
3090 4963 3.390521 ACGCTCCAGAATCCGCCA 61.391 61.111 0.00 0.00 0.00 5.69
3122 4995 3.949031 GTCTAGCAGACCCTAAGCG 57.051 57.895 5.33 0.00 39.28 4.68
3132 5005 0.034896 AACACCAACCGGTCTAGCAG 59.965 55.000 8.04 0.00 44.71 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.