Multiple sequence alignment - TraesCS4D01G184600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G184600 chr4D 100.000 9142 0 0 1 9142 322849111 322858252 0.000000e+00 16883.0
1 TraesCS4D01G184600 chr4D 94.340 53 2 1 6853 6904 322855920 322855972 7.610000e-11 80.5
2 TraesCS4D01G184600 chr4D 94.340 53 2 1 6810 6862 322855963 322856014 7.610000e-11 80.5
3 TraesCS4D01G184600 chr4A 97.641 6190 110 17 2981 9142 149654880 149648699 0.000000e+00 10589.0
4 TraesCS4D01G184600 chr4A 94.788 2552 79 23 238 2753 149657400 149654867 0.000000e+00 3927.0
5 TraesCS4D01G184600 chr4A 87.023 262 17 12 1 249 149658194 149657937 6.990000e-71 279.0
6 TraesCS4D01G184600 chr4A 78.112 233 43 7 8745 8969 29086887 29087119 3.440000e-29 141.0
7 TraesCS4D01G184600 chr4A 93.617 47 2 1 7839 7884 149649967 149649921 1.650000e-07 69.4
8 TraesCS4D01G184600 chr4B 97.055 2071 37 7 6853 8900 398235382 398233313 0.000000e+00 3465.0
9 TraesCS4D01G184600 chr4B 97.229 1949 31 10 4722 6648 398237419 398235472 0.000000e+00 3278.0
10 TraesCS4D01G184600 chr4B 97.632 1689 34 3 2981 4665 398239105 398237419 0.000000e+00 2892.0
11 TraesCS4D01G184600 chr4B 93.805 1356 52 17 459 1793 398241523 398240179 0.000000e+00 2010.0
12 TraesCS4D01G184600 chr4B 97.314 968 17 4 1792 2753 398240056 398239092 0.000000e+00 1635.0
13 TraesCS4D01G184600 chr4B 91.494 482 23 5 3 470 398249751 398249274 0.000000e+00 647.0
14 TraesCS4D01G184600 chr4B 97.561 123 2 1 6740 6862 398235452 398235331 9.300000e-50 209.0
15 TraesCS4D01G184600 chr6B 95.306 1257 58 1 3814 5070 159542037 159543292 0.000000e+00 1993.0
16 TraesCS4D01G184600 chr6B 81.203 266 39 9 30 291 576821246 576821504 4.330000e-48 204.0
17 TraesCS4D01G184600 chr6A 97.727 220 4 1 2752 2971 19837071 19836853 2.410000e-100 377.0
18 TraesCS4D01G184600 chr6A 96.396 222 7 1 2750 2971 359042796 359043016 1.880000e-96 364.0
19 TraesCS4D01G184600 chr6A 82.381 210 27 5 5141 5347 270793388 270793186 3.390000e-39 174.0
20 TraesCS4D01G184600 chr3B 96.833 221 5 2 2751 2971 56077960 56078178 1.450000e-97 368.0
21 TraesCS4D01G184600 chr3B 95.495 222 8 2 2750 2971 425379019 425379238 4.060000e-93 353.0
22 TraesCS4D01G184600 chr3B 84.030 263 23 10 39 284 545205110 545205370 1.530000e-57 235.0
23 TraesCS4D01G184600 chr2A 96.818 220 5 2 2752 2971 522514301 522514084 5.220000e-97 366.0
24 TraesCS4D01G184600 chr2A 79.842 253 43 6 34 282 3580470 3580222 2.620000e-40 178.0
25 TraesCS4D01G184600 chr2A 82.222 90 13 2 502 590 513034184 513034097 3.540000e-09 75.0
26 TraesCS4D01G184600 chr1B 95.595 227 8 2 2745 2971 456734091 456734315 6.750000e-96 363.0
27 TraesCS4D01G184600 chr5B 95.536 224 9 1 2748 2971 477969492 477969714 3.140000e-94 357.0
28 TraesCS4D01G184600 chr5B 90.816 98 7 2 189 285 421999754 421999850 7.450000e-26 130.0
29 TraesCS4D01G184600 chr2B 95.890 219 8 1 2753 2971 545176983 545177200 4.060000e-93 353.0
30 TraesCS4D01G184600 chr1A 95.455 220 9 1 2752 2971 75734106 75733888 5.250000e-92 350.0
31 TraesCS4D01G184600 chr1A 83.402 241 27 4 33 260 63748360 63748120 2.590000e-50 211.0
32 TraesCS4D01G184600 chr1A 79.365 252 47 5 34 281 84053854 84054104 1.220000e-38 172.0
33 TraesCS4D01G184600 chr6D 88.077 260 18 9 36 282 348087602 348087861 6.940000e-76 296.0
34 TraesCS4D01G184600 chr6D 90.741 54 5 0 8762 8815 411804755 411804702 1.270000e-08 73.1
35 TraesCS4D01G184600 chr7B 86.561 253 26 7 34 284 482815823 482815577 1.170000e-68 272.0
36 TraesCS4D01G184600 chr7B 83.871 155 20 3 2357 2506 435172241 435172087 9.570000e-30 143.0
37 TraesCS4D01G184600 chr7B 100.000 32 0 0 6573 6604 26750903 26750872 9.910000e-05 60.2
38 TraesCS4D01G184600 chr5A 84.091 264 29 9 34 284 559822687 559822424 9.170000e-60 243.0
39 TraesCS4D01G184600 chr3D 83.871 248 36 4 39 282 6669304 6669551 5.520000e-57 233.0
40 TraesCS4D01G184600 chr7A 78.626 262 41 8 34 281 58375142 58374882 9.500000e-35 159.0
41 TraesCS4D01G184600 chr7A 100.000 32 0 0 6573 6604 82197550 82197519 9.910000e-05 60.2
42 TraesCS4D01G184600 chr7D 100.000 32 0 0 6573 6604 79544180 79544149 9.910000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G184600 chr4D 322849111 322858252 9141 False 5681.333333 16883 96.226667 1 9142 3 chr4D.!!$F1 9141
1 TraesCS4D01G184600 chr4A 149648699 149654880 6181 True 10589.000000 10589 97.641000 2981 9142 1 chr4A.!!$R1 6161
2 TraesCS4D01G184600 chr4A 149654867 149658194 3327 True 2103.000000 3927 90.905500 1 2753 2 chr4A.!!$R3 2752
3 TraesCS4D01G184600 chr4B 398233313 398241523 8210 True 2248.166667 3465 96.766000 459 8900 6 chr4B.!!$R2 8441
4 TraesCS4D01G184600 chr6B 159542037 159543292 1255 False 1993.000000 1993 95.306000 3814 5070 1 chr6B.!!$F1 1256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 939 0.179176 TGTGTTTGTGTTCTGTGCGC 60.179 50.000 0.00 0.00 0.00 6.09 F
1152 1725 0.179081 CGATCCTTTTCCGTCCCCTC 60.179 60.000 0.00 0.00 0.00 4.30 F
2850 3577 0.171455 GAGGCACCAGTACAGACGAG 59.829 60.000 0.00 0.00 0.00 4.18 F
2901 3628 0.108615 GTCTGTGGGAGGATGACACG 60.109 60.000 0.00 0.00 37.92 4.49 F
2973 3700 1.070134 TGCAACCAAGACGCTAGTTCT 59.930 47.619 0.00 0.00 0.00 3.01 F
4299 5031 1.228154 GAGTTTTGGTGCCCGAGGT 60.228 57.895 0.00 0.00 0.00 3.85 F
4529 5261 1.525995 CAGCACGTTTGGACCTGGT 60.526 57.895 0.00 0.00 0.00 4.00 F
4846 5578 1.741706 AGGATTTCAAGACATGCGCAG 59.258 47.619 18.32 10.85 0.00 5.18 F
4911 5643 3.970842 TCCACCTTACACAAAGTTGGTT 58.029 40.909 1.89 0.00 45.60 3.67 F
6859 7656 1.985159 TGACCCTGGCTTCATTAGTGT 59.015 47.619 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 1947 0.102844 CTGCCAAAACACCACACAGG 59.897 55.000 0.00 0.00 45.67 4.00 R
2882 3609 0.108615 CGTGTCATCCTCCCACAGAC 60.109 60.000 0.00 0.00 0.00 3.51 R
4468 5200 1.135859 CGCTCCATTCACTGTTCAAGC 60.136 52.381 0.00 0.00 0.00 4.01 R
4841 5573 2.547211 AGAAGCATAATCATGTCTGCGC 59.453 45.455 0.00 0.00 39.57 6.09 R
4846 5578 5.746307 TGCAGAAGAAGCATAATCATGTC 57.254 39.130 0.00 0.00 37.02 3.06 R
6248 7002 1.354031 TCATTTGTGAAGGCTGGGCTA 59.646 47.619 0.00 0.00 0.00 3.93 R
6527 7281 0.114954 ACATTTCCTGGCACCCACAT 59.885 50.000 0.00 0.00 0.00 3.21 R
6748 7502 7.609760 TTATATGATCACTTTCACTTTGCGT 57.390 32.000 0.00 0.00 0.00 5.24 R
6879 7676 2.242043 CAAATGAAGCCAGGGTCAAGT 58.758 47.619 0.00 0.00 0.00 3.16 R
8855 9679 1.203313 GGATAGATGGCCACCCCTCTA 60.203 57.143 8.16 12.41 40.95 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.319143 TGTTACTATTTACTGCCTCTGTTTTC 57.681 34.615 0.00 0.00 0.00 2.29
285 844 9.993454 GTAAATAAAAACGGAGGGAGTATATCT 57.007 33.333 0.00 0.00 0.00 1.98
323 882 9.132521 GTTTAATCGTGTAACTAGCTAGACAAA 57.867 33.333 27.45 13.04 31.75 2.83
328 887 6.152323 TCGTGTAACTAGCTAGACAAAAGGAT 59.848 38.462 27.45 0.00 31.75 3.24
334 893 6.769512 ACTAGCTAGACAAAAGGATTGACAA 58.230 36.000 27.45 0.00 0.00 3.18
337 896 4.378459 GCTAGACAAAAGGATTGACAACCG 60.378 45.833 0.00 0.00 0.00 4.44
350 909 2.746362 TGACAACCGTTTTACCGTGTTT 59.254 40.909 0.00 0.00 0.00 2.83
367 927 4.143431 CGTGTTTTTGGACAAGTGTGTTTG 60.143 41.667 0.00 0.00 38.41 2.93
379 939 0.179176 TGTGTTTGTGTTCTGTGCGC 60.179 50.000 0.00 0.00 0.00 6.09
388 948 0.593128 GTTCTGTGCGCAGGTGAATT 59.407 50.000 26.23 0.00 42.78 2.17
389 949 0.874390 TTCTGTGCGCAGGTGAATTC 59.126 50.000 26.23 0.00 42.78 2.17
394 954 2.881513 TGTGCGCAGGTGAATTCTTAAA 59.118 40.909 12.22 0.00 0.00 1.52
399 959 4.728021 GCGCAGGTGAATTCTTAAAGCTAC 60.728 45.833 0.30 0.00 0.00 3.58
645 1214 1.133025 CGCAAATCTTTCTCCGCCATT 59.867 47.619 0.00 0.00 0.00 3.16
652 1221 0.251121 TTTCTCCGCCATTGCTTCCA 60.251 50.000 0.00 0.00 34.43 3.53
705 1274 1.672030 CAGCGGGATCACAGCACAA 60.672 57.895 13.02 0.00 0.00 3.33
706 1275 1.672356 AGCGGGATCACAGCACAAC 60.672 57.895 13.02 0.00 0.00 3.32
707 1276 1.965930 GCGGGATCACAGCACAACA 60.966 57.895 6.87 0.00 0.00 3.33
739 1309 2.606826 ACGACCTCCCTTGGACCC 60.607 66.667 0.00 0.00 0.00 4.46
740 1310 2.284699 CGACCTCCCTTGGACCCT 60.285 66.667 0.00 0.00 0.00 4.34
741 1311 2.359967 CGACCTCCCTTGGACCCTC 61.360 68.421 0.00 0.00 0.00 4.30
742 1312 1.081277 GACCTCCCTTGGACCCTCT 59.919 63.158 0.00 0.00 0.00 3.69
766 1336 1.804326 CTTCGCTACCCAACGACGG 60.804 63.158 0.00 0.00 38.17 4.79
1152 1725 0.179081 CGATCCTTTTCCGTCCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
1153 1726 1.205055 GATCCTTTTCCGTCCCCTCT 58.795 55.000 0.00 0.00 0.00 3.69
1154 1727 1.560146 GATCCTTTTCCGTCCCCTCTT 59.440 52.381 0.00 0.00 0.00 2.85
1357 1938 0.608640 GTCACTCAATCTGGTCCGGT 59.391 55.000 0.00 0.00 0.00 5.28
1366 1947 1.450312 CTGGTCCGGTGATTGAGCC 60.450 63.158 0.00 0.00 0.00 4.70
1367 1948 2.124695 GGTCCGGTGATTGAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
1368 1949 2.670148 GGTCCGGTGATTGAGCCCT 61.670 63.158 0.00 0.00 0.00 5.19
1369 1950 1.450312 GTCCGGTGATTGAGCCCTG 60.450 63.158 0.00 0.00 0.00 4.45
1370 1951 1.918293 TCCGGTGATTGAGCCCTGT 60.918 57.895 0.00 0.00 0.00 4.00
1371 1952 1.746615 CCGGTGATTGAGCCCTGTG 60.747 63.158 0.00 0.00 0.00 3.66
1372 1953 1.003355 CGGTGATTGAGCCCTGTGT 60.003 57.895 0.00 0.00 0.00 3.72
1373 1954 1.300971 CGGTGATTGAGCCCTGTGTG 61.301 60.000 0.00 0.00 0.00 3.82
1374 1955 0.962356 GGTGATTGAGCCCTGTGTGG 60.962 60.000 0.00 0.00 0.00 4.17
1391 1986 1.754226 GTGGTGTTTTGGCAGGAGAAA 59.246 47.619 0.00 0.00 0.00 2.52
1986 2708 4.662278 TGCAAGCCATAGGTAGAAGTTTT 58.338 39.130 0.00 0.00 0.00 2.43
1987 2709 5.076873 TGCAAGCCATAGGTAGAAGTTTTT 58.923 37.500 0.00 0.00 0.00 1.94
2026 2748 7.416664 GGGAGCTGCATAAGAATTTGACAAATA 60.417 37.037 13.69 0.00 0.00 1.40
2671 3398 8.078596 GCCATTTTCTCACTTATCATGGTATTC 58.921 37.037 0.00 0.00 33.54 1.75
2726 3453 3.807622 TGCTACTGAAAACCTCAAGTTCG 59.192 43.478 0.00 0.00 37.88 3.95
2730 3457 4.981794 ACTGAAAACCTCAAGTTCGTTTG 58.018 39.130 0.00 0.00 37.88 2.93
2749 3476 2.844122 GTGAAACAAACCACGAGCTT 57.156 45.000 0.00 0.00 36.32 3.74
2750 3477 3.145212 GTGAAACAAACCACGAGCTTT 57.855 42.857 0.00 0.00 36.32 3.51
2751 3478 3.507786 GTGAAACAAACCACGAGCTTTT 58.492 40.909 0.00 0.00 36.32 2.27
2752 3479 3.924073 GTGAAACAAACCACGAGCTTTTT 59.076 39.130 0.00 0.00 36.32 1.94
2775 3502 5.925189 TTTTCTCGAGAAAACGCAAAAAG 57.075 34.783 37.30 0.85 45.76 2.27
2776 3503 3.602390 TCTCGAGAAAACGCAAAAAGG 57.398 42.857 14.01 0.00 0.00 3.11
2777 3504 2.044135 CTCGAGAAAACGCAAAAAGGC 58.956 47.619 6.58 0.00 0.00 4.35
2778 3505 1.673920 TCGAGAAAACGCAAAAAGGCT 59.326 42.857 0.00 0.00 0.00 4.58
2779 3506 2.098443 TCGAGAAAACGCAAAAAGGCTT 59.902 40.909 0.00 0.00 0.00 4.35
2780 3507 2.857748 CGAGAAAACGCAAAAAGGCTTT 59.142 40.909 6.68 6.68 0.00 3.51
2781 3508 3.305897 CGAGAAAACGCAAAAAGGCTTTT 59.694 39.130 19.14 19.14 36.89 2.27
2802 3529 9.464248 GCTTTTGCGTTTCATTATATTGAAAAG 57.536 29.630 21.56 21.56 43.49 2.27
2806 3533 9.773328 TTGCGTTTCATTATATTGAAAAGAGAG 57.227 29.630 26.27 15.95 44.71 3.20
2807 3534 9.161629 TGCGTTTCATTATATTGAAAAGAGAGA 57.838 29.630 26.27 12.49 44.71 3.10
2808 3535 9.643652 GCGTTTCATTATATTGAAAAGAGAGAG 57.356 33.333 26.27 13.76 44.71 3.20
2824 3551 9.660180 AAAAGAGAGAGATAGTTTGTTACATCC 57.340 33.333 0.00 0.00 0.00 3.51
2825 3552 8.602472 AAGAGAGAGATAGTTTGTTACATCCT 57.398 34.615 0.00 0.00 0.00 3.24
2826 3553 8.232913 AGAGAGAGATAGTTTGTTACATCCTC 57.767 38.462 0.00 0.00 0.00 3.71
2827 3554 7.286775 AGAGAGAGATAGTTTGTTACATCCTCC 59.713 40.741 0.00 0.00 0.00 4.30
2828 3555 7.129425 AGAGAGATAGTTTGTTACATCCTCCT 58.871 38.462 0.00 0.00 0.00 3.69
2829 3556 8.282982 AGAGAGATAGTTTGTTACATCCTCCTA 58.717 37.037 0.00 0.00 0.00 2.94
2830 3557 8.472007 AGAGATAGTTTGTTACATCCTCCTAG 57.528 38.462 0.00 0.00 0.00 3.02
2831 3558 7.507616 AGAGATAGTTTGTTACATCCTCCTAGG 59.492 40.741 0.82 0.82 36.46 3.02
2841 3568 4.796408 CTCCTAGGAGGCACCAGT 57.204 61.111 28.68 0.00 42.04 4.00
2842 3569 3.926729 CTCCTAGGAGGCACCAGTA 57.073 57.895 28.68 0.00 42.04 2.74
2843 3570 1.404843 CTCCTAGGAGGCACCAGTAC 58.595 60.000 28.68 0.00 42.04 2.73
2844 3571 0.708209 TCCTAGGAGGCACCAGTACA 59.292 55.000 7.62 0.00 42.04 2.90
2845 3572 1.115467 CCTAGGAGGCACCAGTACAG 58.885 60.000 1.05 0.00 42.04 2.74
2846 3573 1.342076 CCTAGGAGGCACCAGTACAGA 60.342 57.143 1.05 0.00 42.04 3.41
2847 3574 1.751924 CTAGGAGGCACCAGTACAGAC 59.248 57.143 3.18 0.00 42.04 3.51
2848 3575 1.215647 GGAGGCACCAGTACAGACG 59.784 63.158 0.00 0.00 38.79 4.18
2849 3576 1.248785 GGAGGCACCAGTACAGACGA 61.249 60.000 0.00 0.00 38.79 4.20
2850 3577 0.171455 GAGGCACCAGTACAGACGAG 59.829 60.000 0.00 0.00 0.00 4.18
2851 3578 0.251209 AGGCACCAGTACAGACGAGA 60.251 55.000 0.00 0.00 0.00 4.04
2852 3579 0.601558 GGCACCAGTACAGACGAGAA 59.398 55.000 0.00 0.00 0.00 2.87
2853 3580 1.000506 GGCACCAGTACAGACGAGAAA 59.999 52.381 0.00 0.00 0.00 2.52
2854 3581 2.059541 GCACCAGTACAGACGAGAAAC 58.940 52.381 0.00 0.00 0.00 2.78
2855 3582 2.545113 GCACCAGTACAGACGAGAAACA 60.545 50.000 0.00 0.00 0.00 2.83
2856 3583 3.050619 CACCAGTACAGACGAGAAACAC 58.949 50.000 0.00 0.00 0.00 3.32
2857 3584 2.691526 ACCAGTACAGACGAGAAACACA 59.308 45.455 0.00 0.00 0.00 3.72
2858 3585 3.131577 ACCAGTACAGACGAGAAACACAA 59.868 43.478 0.00 0.00 0.00 3.33
2859 3586 4.116961 CCAGTACAGACGAGAAACACAAA 58.883 43.478 0.00 0.00 0.00 2.83
2860 3587 4.569162 CCAGTACAGACGAGAAACACAAAA 59.431 41.667 0.00 0.00 0.00 2.44
2861 3588 5.236478 CCAGTACAGACGAGAAACACAAAAT 59.764 40.000 0.00 0.00 0.00 1.82
2862 3589 6.422701 CCAGTACAGACGAGAAACACAAAATA 59.577 38.462 0.00 0.00 0.00 1.40
2863 3590 7.042321 CCAGTACAGACGAGAAACACAAAATAA 60.042 37.037 0.00 0.00 0.00 1.40
2864 3591 8.332464 CAGTACAGACGAGAAACACAAAATAAA 58.668 33.333 0.00 0.00 0.00 1.40
2865 3592 8.333186 AGTACAGACGAGAAACACAAAATAAAC 58.667 33.333 0.00 0.00 0.00 2.01
2866 3593 7.316544 ACAGACGAGAAACACAAAATAAACT 57.683 32.000 0.00 0.00 0.00 2.66
2867 3594 7.407337 ACAGACGAGAAACACAAAATAAACTC 58.593 34.615 0.00 0.00 0.00 3.01
2868 3595 7.065324 ACAGACGAGAAACACAAAATAAACTCA 59.935 33.333 0.00 0.00 0.00 3.41
2869 3596 7.584123 CAGACGAGAAACACAAAATAAACTCAG 59.416 37.037 0.00 0.00 0.00 3.35
2870 3597 7.280205 AGACGAGAAACACAAAATAAACTCAGT 59.720 33.333 0.00 0.00 0.00 3.41
2871 3598 7.186804 ACGAGAAACACAAAATAAACTCAGTG 58.813 34.615 0.00 0.00 0.00 3.66
2872 3599 6.632834 CGAGAAACACAAAATAAACTCAGTGG 59.367 38.462 0.00 0.00 0.00 4.00
2873 3600 7.466725 CGAGAAACACAAAATAAACTCAGTGGA 60.467 37.037 0.00 0.00 0.00 4.02
2874 3601 7.480810 AGAAACACAAAATAAACTCAGTGGAC 58.519 34.615 0.00 0.00 0.00 4.02
2875 3602 5.418310 ACACAAAATAAACTCAGTGGACG 57.582 39.130 0.00 0.00 0.00 4.79
2876 3603 4.879545 ACACAAAATAAACTCAGTGGACGT 59.120 37.500 0.00 0.00 0.00 4.34
2877 3604 5.007332 ACACAAAATAAACTCAGTGGACGTC 59.993 40.000 7.13 7.13 0.00 4.34
2878 3605 4.514066 ACAAAATAAACTCAGTGGACGTCC 59.486 41.667 28.17 28.17 0.00 4.79
2879 3606 3.329929 AATAAACTCAGTGGACGTCCC 57.670 47.619 31.19 21.56 34.29 4.46
2880 3607 1.707106 TAAACTCAGTGGACGTCCCA 58.293 50.000 31.19 16.65 44.25 4.37
2887 3614 2.200370 TGGACGTCCCAGGTCTGT 59.800 61.111 31.19 0.00 40.82 3.41
2888 3615 2.207229 TGGACGTCCCAGGTCTGTG 61.207 63.158 31.19 0.00 40.82 3.66
2889 3616 2.657237 GACGTCCCAGGTCTGTGG 59.343 66.667 3.51 0.00 37.34 4.17
2895 3622 4.488303 CCAGGTCTGTGGGAGGAT 57.512 61.111 0.00 0.00 33.46 3.24
2896 3623 1.910722 CCAGGTCTGTGGGAGGATG 59.089 63.158 0.00 0.00 33.46 3.51
2897 3624 0.618680 CCAGGTCTGTGGGAGGATGA 60.619 60.000 0.00 0.00 33.46 2.92
2898 3625 0.539051 CAGGTCTGTGGGAGGATGAC 59.461 60.000 0.00 0.00 0.00 3.06
2899 3626 0.117140 AGGTCTGTGGGAGGATGACA 59.883 55.000 0.00 0.00 0.00 3.58
2900 3627 0.250513 GGTCTGTGGGAGGATGACAC 59.749 60.000 0.00 0.00 35.75 3.67
2901 3628 0.108615 GTCTGTGGGAGGATGACACG 60.109 60.000 0.00 0.00 37.92 4.49
2902 3629 1.448540 CTGTGGGAGGATGACACGC 60.449 63.158 0.00 0.00 37.92 5.34
2903 3630 2.171209 CTGTGGGAGGATGACACGCA 62.171 60.000 0.00 0.00 37.92 5.24
2904 3631 1.448540 GTGGGAGGATGACACGCAG 60.449 63.158 0.00 0.00 0.00 5.18
2905 3632 2.187946 GGGAGGATGACACGCAGG 59.812 66.667 0.00 0.00 0.00 4.85
2906 3633 2.512515 GGAGGATGACACGCAGGC 60.513 66.667 0.00 0.00 0.00 4.85
2907 3634 2.512515 GAGGATGACACGCAGGCC 60.513 66.667 0.00 0.00 0.00 5.19
2908 3635 3.005539 AGGATGACACGCAGGCCT 61.006 61.111 0.00 0.00 32.24 5.19
2909 3636 2.512515 GGATGACACGCAGGCCTC 60.513 66.667 0.00 0.00 0.00 4.70
2910 3637 2.887568 GATGACACGCAGGCCTCG 60.888 66.667 19.02 19.02 0.00 4.63
2911 3638 3.356639 GATGACACGCAGGCCTCGA 62.357 63.158 25.01 8.38 0.00 4.04
2912 3639 3.362399 ATGACACGCAGGCCTCGAG 62.362 63.158 25.01 20.45 0.00 4.04
2953 3680 4.416505 CGCAGCTTCTTCTTTGATCTTT 57.583 40.909 0.00 0.00 0.00 2.52
2954 3681 4.156915 CGCAGCTTCTTCTTTGATCTTTG 58.843 43.478 0.00 0.00 0.00 2.77
2955 3682 3.919197 GCAGCTTCTTCTTTGATCTTTGC 59.081 43.478 0.00 0.00 0.00 3.68
2956 3683 4.558095 GCAGCTTCTTCTTTGATCTTTGCA 60.558 41.667 0.00 0.00 0.00 4.08
2957 3684 5.526115 CAGCTTCTTCTTTGATCTTTGCAA 58.474 37.500 0.00 0.00 0.00 4.08
2958 3685 5.401674 CAGCTTCTTCTTTGATCTTTGCAAC 59.598 40.000 0.00 0.00 0.00 4.17
2959 3686 4.683320 GCTTCTTCTTTGATCTTTGCAACC 59.317 41.667 0.00 0.00 0.00 3.77
2960 3687 5.737063 GCTTCTTCTTTGATCTTTGCAACCA 60.737 40.000 0.00 0.00 0.00 3.67
2961 3688 5.850557 TCTTCTTTGATCTTTGCAACCAA 57.149 34.783 0.00 0.00 0.00 3.67
2962 3689 5.835257 TCTTCTTTGATCTTTGCAACCAAG 58.165 37.500 0.00 0.00 31.52 3.61
2963 3690 5.593909 TCTTCTTTGATCTTTGCAACCAAGA 59.406 36.000 0.00 0.00 31.52 3.02
2964 3691 5.186996 TCTTTGATCTTTGCAACCAAGAC 57.813 39.130 0.00 0.00 31.52 3.01
2965 3692 3.624326 TTGATCTTTGCAACCAAGACG 57.376 42.857 0.00 0.00 31.52 4.18
2966 3693 1.266718 TGATCTTTGCAACCAAGACGC 59.733 47.619 0.00 0.00 31.52 5.19
2967 3694 1.537202 GATCTTTGCAACCAAGACGCT 59.463 47.619 0.00 0.00 31.52 5.07
2968 3695 2.248280 TCTTTGCAACCAAGACGCTA 57.752 45.000 0.00 0.00 31.52 4.26
2969 3696 2.143122 TCTTTGCAACCAAGACGCTAG 58.857 47.619 0.00 0.00 31.52 3.42
2970 3697 1.873591 CTTTGCAACCAAGACGCTAGT 59.126 47.619 0.00 0.00 31.52 2.57
2971 3698 1.961793 TTGCAACCAAGACGCTAGTT 58.038 45.000 0.00 0.00 0.00 2.24
2972 3699 1.508632 TGCAACCAAGACGCTAGTTC 58.491 50.000 0.00 0.00 0.00 3.01
2973 3700 1.070134 TGCAACCAAGACGCTAGTTCT 59.930 47.619 0.00 0.00 0.00 3.01
2974 3701 2.297880 TGCAACCAAGACGCTAGTTCTA 59.702 45.455 0.00 0.00 0.00 2.10
2975 3702 3.056107 TGCAACCAAGACGCTAGTTCTAT 60.056 43.478 0.00 0.00 0.00 1.98
2976 3703 3.933332 GCAACCAAGACGCTAGTTCTATT 59.067 43.478 0.00 0.00 0.00 1.73
2977 3704 4.392138 GCAACCAAGACGCTAGTTCTATTT 59.608 41.667 0.00 0.00 0.00 1.40
2978 3705 5.579511 GCAACCAAGACGCTAGTTCTATTTA 59.420 40.000 0.00 0.00 0.00 1.40
2979 3706 6.237861 GCAACCAAGACGCTAGTTCTATTTAG 60.238 42.308 0.00 0.00 0.00 1.85
3490 4222 9.190317 TGATTCTGAGTTTCTAACTATCTGCTA 57.810 33.333 0.00 0.00 43.03 3.49
3586 4318 4.020218 TCCTTCAGAAATCGAGGTGATGTT 60.020 41.667 0.00 0.00 37.39 2.71
3751 4483 5.389307 CGAGAAGCACTCTGAATTTTCTGAC 60.389 44.000 8.78 0.00 42.92 3.51
3928 4660 6.891361 TCATCAGGGTGTGATTTATTTGATGT 59.109 34.615 9.97 0.00 44.05 3.06
4224 4956 2.835764 TCAGTTAAATCGTACCAGCCCT 59.164 45.455 0.00 0.00 0.00 5.19
4235 4967 2.309136 ACCAGCCCTTGTAGCAAATT 57.691 45.000 0.00 0.00 0.00 1.82
4299 5031 1.228154 GAGTTTTGGTGCCCGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
4529 5261 1.525995 CAGCACGTTTGGACCTGGT 60.526 57.895 0.00 0.00 0.00 4.00
4546 5278 5.899278 ACCTGGTATTGGAATTTTGTAGGT 58.101 37.500 0.00 0.00 0.00 3.08
4841 5573 7.064847 CAGAGAAGAGAAGGATTTCAAGACATG 59.935 40.741 0.00 0.00 35.70 3.21
4846 5578 1.741706 AGGATTTCAAGACATGCGCAG 59.258 47.619 18.32 10.85 0.00 5.18
4911 5643 3.970842 TCCACCTTACACAAAGTTGGTT 58.029 40.909 1.89 0.00 45.60 3.67
5201 5933 8.981647 CCTTTTGCAAGCCATATATTGAATAAC 58.018 33.333 0.00 0.00 0.00 1.89
5284 6016 5.755849 ACGAGATGACCCCAATAAGAAAAT 58.244 37.500 0.00 0.00 0.00 1.82
5961 6714 8.939929 TCAGCACAAAAGTGAAATATCTTAGAG 58.060 33.333 0.00 0.00 0.00 2.43
6073 6827 8.893563 TTTTCCCATGAATTAAGGACATACTT 57.106 30.769 0.00 0.00 34.52 2.24
6527 7281 5.478407 CAATGTGACAGACAGTATACACCA 58.522 41.667 5.50 0.00 38.23 4.17
6646 7400 5.357596 GCAAAAATCCGTTACCCACCTTATA 59.642 40.000 0.00 0.00 0.00 0.98
6708 7462 9.539825 GAAAAGACAAGAGATATGCATTCTAGA 57.460 33.333 3.54 0.00 0.00 2.43
6748 7502 3.936453 GGGCGTGTATTGAGTATTTGACA 59.064 43.478 0.00 0.00 0.00 3.58
6854 7651 2.683211 AACTTGACCCTGGCTTCATT 57.317 45.000 0.00 0.00 0.00 2.57
6855 7652 3.806949 AACTTGACCCTGGCTTCATTA 57.193 42.857 0.00 0.00 0.00 1.90
6856 7653 3.356529 ACTTGACCCTGGCTTCATTAG 57.643 47.619 0.00 0.00 0.00 1.73
6857 7654 2.644798 ACTTGACCCTGGCTTCATTAGT 59.355 45.455 0.00 0.00 0.00 2.24
6858 7655 2.787473 TGACCCTGGCTTCATTAGTG 57.213 50.000 0.00 0.00 0.00 2.74
6859 7656 1.985159 TGACCCTGGCTTCATTAGTGT 59.015 47.619 0.00 0.00 0.00 3.55
6860 7657 3.178046 TGACCCTGGCTTCATTAGTGTA 58.822 45.455 0.00 0.00 0.00 2.90
6861 7658 3.585289 TGACCCTGGCTTCATTAGTGTAA 59.415 43.478 0.00 0.00 0.00 2.41
6862 7659 4.192317 GACCCTGGCTTCATTAGTGTAAG 58.808 47.826 0.00 0.00 0.00 2.34
6863 7660 2.945668 CCCTGGCTTCATTAGTGTAAGC 59.054 50.000 11.37 11.37 43.85 3.09
6864 7661 3.609853 CCTGGCTTCATTAGTGTAAGCA 58.390 45.455 17.52 8.32 45.86 3.91
6865 7662 4.009675 CCTGGCTTCATTAGTGTAAGCAA 58.990 43.478 17.52 10.10 45.86 3.91
6866 7663 4.458989 CCTGGCTTCATTAGTGTAAGCAAA 59.541 41.667 17.52 9.09 45.86 3.68
6867 7664 5.126061 CCTGGCTTCATTAGTGTAAGCAAAT 59.874 40.000 17.52 0.00 45.86 2.32
6868 7665 6.194796 TGGCTTCATTAGTGTAAGCAAATC 57.805 37.500 17.52 6.90 45.86 2.17
6869 7666 5.125417 TGGCTTCATTAGTGTAAGCAAATCC 59.875 40.000 17.52 6.66 45.86 3.01
6870 7667 5.125417 GGCTTCATTAGTGTAAGCAAATCCA 59.875 40.000 17.52 0.00 45.86 3.41
6871 7668 6.350110 GGCTTCATTAGTGTAAGCAAATCCAA 60.350 38.462 17.52 0.00 45.86 3.53
6872 7669 7.090173 GCTTCATTAGTGTAAGCAAATCCAAA 58.910 34.615 13.57 0.00 43.98 3.28
6873 7670 7.274250 GCTTCATTAGTGTAAGCAAATCCAAAG 59.726 37.037 13.57 0.00 43.98 2.77
6874 7671 7.994425 TCATTAGTGTAAGCAAATCCAAAGA 57.006 32.000 0.00 0.00 0.00 2.52
6875 7672 8.402798 TCATTAGTGTAAGCAAATCCAAAGAA 57.597 30.769 0.00 0.00 0.00 2.52
6876 7673 8.855110 TCATTAGTGTAAGCAAATCCAAAGAAA 58.145 29.630 0.00 0.00 0.00 2.52
6877 7674 9.474920 CATTAGTGTAAGCAAATCCAAAGAAAA 57.525 29.630 0.00 0.00 0.00 2.29
6895 7692 2.452600 AAAACTTGACCCTGGCTTCA 57.547 45.000 0.00 0.00 0.00 3.02
6896 7693 2.683211 AAACTTGACCCTGGCTTCAT 57.317 45.000 0.00 0.00 0.00 2.57
7010 7807 0.387622 CATGTTTTGCTGCCAGTCGG 60.388 55.000 0.00 0.00 0.00 4.79
7155 7952 6.029607 CGTATCATGCACATGTTTAGCTTTT 58.970 36.000 10.27 0.00 39.72 2.27
7337 8134 5.216614 ACTCCTGTAGTTTTGTCCTCTTC 57.783 43.478 0.00 0.00 33.35 2.87
7497 8294 8.364894 TCCCTTTCTTCTTTTGGCTAATTTTAC 58.635 33.333 0.00 0.00 0.00 2.01
7623 8420 0.673644 ATGACCGGGCAAACTCTTCG 60.674 55.000 17.77 0.00 0.00 3.79
7644 8441 8.504005 TCTTCGTTCCTCTTTGATTTAAATGAC 58.496 33.333 5.17 0.00 0.00 3.06
8167 8971 2.295629 TGAAGAGCAGCTCCGATGATAG 59.704 50.000 19.40 0.00 0.00 2.08
8169 8973 2.591923 AGAGCAGCTCCGATGATAGAA 58.408 47.619 19.40 0.00 0.00 2.10
8225 9032 6.769512 TCTATCCCAGTTCATTATACAAGGC 58.230 40.000 0.00 0.00 0.00 4.35
8290 9097 7.520451 AAGAAATAAAGTCCCAAGTACCAAC 57.480 36.000 0.00 0.00 0.00 3.77
8487 9298 6.128138 AGTCTTATCTTTTGGTAGGCAAGT 57.872 37.500 0.00 0.00 0.00 3.16
8526 9337 6.486253 TTCGCGTCTTAAACTCTCTTAGTA 57.514 37.500 5.77 0.00 37.50 1.82
8543 9354 9.151471 TCTCTTAGTAGTATTGTGCAAAATGTC 57.849 33.333 12.62 5.56 0.00 3.06
8586 9397 6.093909 CCATATCACAACTTGCTTGACACATA 59.906 38.462 0.00 0.00 33.59 2.29
8614 9425 5.428131 AGCTGGGAAGAGATGAAATAGAAGT 59.572 40.000 0.00 0.00 0.00 3.01
8615 9426 6.069731 AGCTGGGAAGAGATGAAATAGAAGTT 60.070 38.462 0.00 0.00 0.00 2.66
8726 9550 4.023450 GCCAGTCACTAACTTGTAAAACCC 60.023 45.833 0.00 0.00 35.45 4.11
8733 9557 5.524646 CACTAACTTGTAAAACCCGTTCTCA 59.475 40.000 0.00 0.00 0.00 3.27
8855 9679 2.975489 CTCCTGCCTTACTCCCATACAT 59.025 50.000 0.00 0.00 0.00 2.29
8906 9730 7.941238 CCCAGATAGATTGGTAATGTTCAGAAT 59.059 37.037 0.00 0.00 33.73 2.40
8934 9758 2.079925 GGAGTCTTCATTTGCTTCGCT 58.920 47.619 0.00 0.00 0.00 4.93
8946 9770 2.143122 TGCTTCGCTACTTGTTCCAAG 58.857 47.619 2.54 2.54 0.00 3.61
9089 9913 4.155709 TGACCATGTTTTGCTTATTGGGA 58.844 39.130 0.00 0.00 0.00 4.37
9101 9925 4.193865 GCTTATTGGGAATTGCAGCAAAT 58.806 39.130 12.97 2.90 0.00 2.32
9113 9937 7.148590 GGAATTGCAGCAAATAAATCGAAGTTT 60.149 33.333 12.97 0.00 0.00 2.66
9116 9940 4.562789 GCAGCAAATAAATCGAAGTTTCCC 59.437 41.667 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.319143 TGAAAACAGAGGCAGTAAATAGTAAC 57.681 34.615 0.00 0.00 0.00 2.50
37 38 4.216257 TGCAGAGTAAATGAAAACAGAGGC 59.784 41.667 0.00 0.00 0.00 4.70
48 49 9.113838 AGACAAACCTAATATGCAGAGTAAATG 57.886 33.333 0.00 0.00 0.00 2.32
234 247 7.868415 ACTCCGTATATTAGCTTTGATGAAGTC 59.132 37.037 0.00 0.00 37.69 3.01
235 248 7.727181 ACTCCGTATATTAGCTTTGATGAAGT 58.273 34.615 0.00 0.00 37.69 3.01
236 249 9.692749 TTACTCCGTATATTAGCTTTGATGAAG 57.307 33.333 0.00 0.00 38.45 3.02
268 827 6.390048 TGATAGAGATATACTCCCTCCGTT 57.610 41.667 0.00 0.00 45.96 4.44
269 828 6.584471 ATGATAGAGATATACTCCCTCCGT 57.416 41.667 0.00 0.00 45.96 4.69
305 864 7.817962 TCAATCCTTTTGTCTAGCTAGTTACAC 59.182 37.037 20.10 11.46 0.00 2.90
323 882 3.251487 CGGTAAAACGGTTGTCAATCCTT 59.749 43.478 0.00 0.00 0.00 3.36
328 887 2.354259 ACACGGTAAAACGGTTGTCAA 58.646 42.857 0.00 0.00 38.39 3.18
334 893 2.751806 TCCAAAAACACGGTAAAACGGT 59.248 40.909 0.00 0.00 38.39 4.83
337 896 5.061187 CACTTGTCCAAAAACACGGTAAAAC 59.939 40.000 0.00 0.00 0.00 2.43
350 909 4.279671 AGAACACAAACACACTTGTCCAAA 59.720 37.500 0.00 0.00 37.43 3.28
379 939 7.856145 ATGAGTAGCTTTAAGAATTCACCTG 57.144 36.000 8.44 0.00 0.00 4.00
533 1102 9.436957 GATGTACCAGACAAATTAAAGAAGAGA 57.563 33.333 0.00 0.00 42.78 3.10
541 1110 3.619483 CGCCGATGTACCAGACAAATTAA 59.381 43.478 0.00 0.00 42.78 1.40
543 1112 2.006888 CGCCGATGTACCAGACAAATT 58.993 47.619 0.00 0.00 42.78 1.82
545 1114 0.319083 ACGCCGATGTACCAGACAAA 59.681 50.000 0.00 0.00 42.78 2.83
645 1214 1.956043 GTGGAACGCAATGGAAGCA 59.044 52.632 0.00 0.00 39.55 3.91
688 1257 1.672356 GTTGTGCTGTGATCCCGCT 60.672 57.895 0.00 0.00 0.00 5.52
739 1309 1.757118 TGGGTAGCGAAGGATTGAGAG 59.243 52.381 0.00 0.00 0.00 3.20
740 1310 1.860641 TGGGTAGCGAAGGATTGAGA 58.139 50.000 0.00 0.00 0.00 3.27
741 1311 2.280628 GTTGGGTAGCGAAGGATTGAG 58.719 52.381 0.00 0.00 0.00 3.02
742 1312 1.404986 CGTTGGGTAGCGAAGGATTGA 60.405 52.381 3.64 0.00 31.68 2.57
783 1353 2.203126 GGCTTCTGGATGGGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
1335 1913 0.108138 GGACCAGATTGAGTGACCCG 60.108 60.000 0.00 0.00 0.00 5.28
1357 1938 0.250858 CACCACACAGGGCTCAATCA 60.251 55.000 0.00 0.00 43.89 2.57
1366 1947 0.102844 CTGCCAAAACACCACACAGG 59.897 55.000 0.00 0.00 45.67 4.00
1367 1948 0.102844 CCTGCCAAAACACCACACAG 59.897 55.000 0.00 0.00 0.00 3.66
1368 1949 0.323816 TCCTGCCAAAACACCACACA 60.324 50.000 0.00 0.00 0.00 3.72
1369 1950 0.385390 CTCCTGCCAAAACACCACAC 59.615 55.000 0.00 0.00 0.00 3.82
1370 1951 0.257328 TCTCCTGCCAAAACACCACA 59.743 50.000 0.00 0.00 0.00 4.17
1371 1952 1.398692 TTCTCCTGCCAAAACACCAC 58.601 50.000 0.00 0.00 0.00 4.16
1372 1953 1.754226 GTTTCTCCTGCCAAAACACCA 59.246 47.619 0.00 0.00 33.97 4.17
1373 1954 2.031870 AGTTTCTCCTGCCAAAACACC 58.968 47.619 0.00 0.00 35.77 4.16
1374 1955 2.223805 CCAGTTTCTCCTGCCAAAACAC 60.224 50.000 0.00 0.00 35.77 3.32
1391 1986 1.763770 CCTCCTGTTTGCCTCCAGT 59.236 57.895 0.00 0.00 0.00 4.00
1637 2232 0.310543 GCAAAACGATGGACTGTGCA 59.689 50.000 4.00 4.00 0.00 4.57
1832 2551 5.585820 AATGCATGCACATTGAAGTATCA 57.414 34.783 25.37 0.00 38.80 2.15
1905 2624 9.063615 ACATTCGAGTATCCACGCATATATATA 57.936 33.333 0.00 0.00 0.00 0.86
2549 3276 8.981647 AGCAAGCATTTTCAAGTTTAACATTAG 58.018 29.630 0.00 0.00 0.00 1.73
2671 3398 2.625737 AGAGACCAACATTGCATCTCG 58.374 47.619 13.93 0.00 40.73 4.04
2730 3457 2.844122 AAGCTCGTGGTTTGTTTCAC 57.156 45.000 0.00 0.00 0.00 3.18
2753 3480 8.761811 AGCCTTTTTGCGTTTTCTCGAGAAAA 62.762 38.462 37.30 37.30 42.31 2.29
2754 3481 4.347813 CCTTTTTGCGTTTTCTCGAGAAA 58.652 39.130 31.62 31.62 41.77 2.52
2755 3482 3.790789 GCCTTTTTGCGTTTTCTCGAGAA 60.791 43.478 23.74 23.74 0.00 2.87
2756 3483 2.286772 GCCTTTTTGCGTTTTCTCGAGA 60.287 45.455 12.08 12.08 0.00 4.04
2757 3484 2.044135 GCCTTTTTGCGTTTTCTCGAG 58.956 47.619 5.93 5.93 0.00 4.04
2758 3485 1.673920 AGCCTTTTTGCGTTTTCTCGA 59.326 42.857 0.00 0.00 36.02 4.04
2759 3486 2.119671 AGCCTTTTTGCGTTTTCTCG 57.880 45.000 0.00 0.00 36.02 4.04
2760 3487 4.577639 CAAAAGCCTTTTTGCGTTTTCTC 58.422 39.130 0.00 0.00 44.59 2.87
2761 3488 4.598406 CAAAAGCCTTTTTGCGTTTTCT 57.402 36.364 0.00 0.00 44.59 2.52
2770 3497 6.859420 ATAATGAAACGCAAAAGCCTTTTT 57.141 29.167 0.00 0.00 36.97 1.94
2771 3498 8.442384 CAATATAATGAAACGCAAAAGCCTTTT 58.558 29.630 0.00 0.00 0.00 2.27
2772 3499 7.816995 TCAATATAATGAAACGCAAAAGCCTTT 59.183 29.630 0.00 0.00 0.00 3.11
2773 3500 7.319646 TCAATATAATGAAACGCAAAAGCCTT 58.680 30.769 0.00 0.00 0.00 4.35
2774 3501 6.862209 TCAATATAATGAAACGCAAAAGCCT 58.138 32.000 0.00 0.00 0.00 4.58
2775 3502 7.518731 TTCAATATAATGAAACGCAAAAGCC 57.481 32.000 0.55 0.00 36.42 4.35
2776 3503 9.464248 CTTTTCAATATAATGAAACGCAAAAGC 57.536 29.630 14.21 0.00 46.06 3.51
2780 3507 9.773328 CTCTCTTTTCAATATAATGAAACGCAA 57.227 29.630 14.21 1.38 46.06 4.85
2781 3508 9.161629 TCTCTCTTTTCAATATAATGAAACGCA 57.838 29.630 14.21 1.69 46.06 5.24
2782 3509 9.643652 CTCTCTCTTTTCAATATAATGAAACGC 57.356 33.333 14.21 0.00 46.06 4.84
2798 3525 9.660180 GGATGTAACAAACTATCTCTCTCTTTT 57.340 33.333 0.00 0.00 0.00 2.27
2799 3526 9.041354 AGGATGTAACAAACTATCTCTCTCTTT 57.959 33.333 0.00 0.00 0.00 2.52
2800 3527 8.602472 AGGATGTAACAAACTATCTCTCTCTT 57.398 34.615 0.00 0.00 0.00 2.85
2801 3528 7.286775 GGAGGATGTAACAAACTATCTCTCTCT 59.713 40.741 0.00 0.00 0.00 3.10
2802 3529 7.286775 AGGAGGATGTAACAAACTATCTCTCTC 59.713 40.741 0.00 0.00 0.00 3.20
2803 3530 7.129425 AGGAGGATGTAACAAACTATCTCTCT 58.871 38.462 0.00 0.00 0.00 3.10
2804 3531 7.354751 AGGAGGATGTAACAAACTATCTCTC 57.645 40.000 0.00 0.00 0.00 3.20
2805 3532 7.507616 CCTAGGAGGATGTAACAAACTATCTCT 59.492 40.741 1.05 0.00 37.67 3.10
2806 3533 7.506261 TCCTAGGAGGATGTAACAAACTATCTC 59.494 40.741 7.62 0.00 40.06 2.75
2807 3534 7.363031 TCCTAGGAGGATGTAACAAACTATCT 58.637 38.462 7.62 0.00 40.06 1.98
2808 3535 7.598759 TCCTAGGAGGATGTAACAAACTATC 57.401 40.000 7.62 0.00 40.06 2.08
2809 3536 7.604657 CTCCTAGGAGGATGTAACAAACTAT 57.395 40.000 28.68 0.00 44.81 2.12
2811 3538 5.941555 CTCCTAGGAGGATGTAACAAACT 57.058 43.478 28.68 0.00 44.81 2.66
2824 3551 1.342076 TGTACTGGTGCCTCCTAGGAG 60.342 57.143 29.27 29.27 37.67 3.69
2825 3552 0.708209 TGTACTGGTGCCTCCTAGGA 59.292 55.000 11.98 11.98 37.67 2.94
2826 3553 1.115467 CTGTACTGGTGCCTCCTAGG 58.885 60.000 0.82 0.82 38.80 3.02
2827 3554 1.751924 GTCTGTACTGGTGCCTCCTAG 59.248 57.143 0.00 0.00 37.07 3.02
2828 3555 1.848652 GTCTGTACTGGTGCCTCCTA 58.151 55.000 0.00 0.00 37.07 2.94
2829 3556 1.251527 CGTCTGTACTGGTGCCTCCT 61.252 60.000 0.00 0.00 37.07 3.69
2830 3557 1.215647 CGTCTGTACTGGTGCCTCC 59.784 63.158 0.00 0.00 0.00 4.30
2831 3558 0.171455 CTCGTCTGTACTGGTGCCTC 59.829 60.000 0.00 0.00 0.00 4.70
2832 3559 0.251209 TCTCGTCTGTACTGGTGCCT 60.251 55.000 0.00 0.00 0.00 4.75
2833 3560 0.601558 TTCTCGTCTGTACTGGTGCC 59.398 55.000 0.00 0.00 0.00 5.01
2834 3561 2.059541 GTTTCTCGTCTGTACTGGTGC 58.940 52.381 0.00 0.00 0.00 5.01
2835 3562 3.050619 GTGTTTCTCGTCTGTACTGGTG 58.949 50.000 0.00 0.00 0.00 4.17
2836 3563 2.691526 TGTGTTTCTCGTCTGTACTGGT 59.308 45.455 0.00 0.00 0.00 4.00
2837 3564 3.364889 TGTGTTTCTCGTCTGTACTGG 57.635 47.619 0.00 0.00 0.00 4.00
2838 3565 5.712217 TTTTGTGTTTCTCGTCTGTACTG 57.288 39.130 0.00 0.00 0.00 2.74
2839 3566 8.333186 GTTTATTTTGTGTTTCTCGTCTGTACT 58.667 33.333 0.00 0.00 0.00 2.73
2840 3567 8.333186 AGTTTATTTTGTGTTTCTCGTCTGTAC 58.667 33.333 0.00 0.00 0.00 2.90
2841 3568 8.428186 AGTTTATTTTGTGTTTCTCGTCTGTA 57.572 30.769 0.00 0.00 0.00 2.74
2842 3569 7.065324 TGAGTTTATTTTGTGTTTCTCGTCTGT 59.935 33.333 0.00 0.00 0.00 3.41
2843 3570 7.406553 TGAGTTTATTTTGTGTTTCTCGTCTG 58.593 34.615 0.00 0.00 0.00 3.51
2844 3571 7.280205 ACTGAGTTTATTTTGTGTTTCTCGTCT 59.720 33.333 0.00 0.00 0.00 4.18
2845 3572 7.373441 CACTGAGTTTATTTTGTGTTTCTCGTC 59.627 37.037 0.00 0.00 0.00 4.20
2846 3573 7.186804 CACTGAGTTTATTTTGTGTTTCTCGT 58.813 34.615 0.00 0.00 0.00 4.18
2847 3574 6.632834 CCACTGAGTTTATTTTGTGTTTCTCG 59.367 38.462 0.00 0.00 0.00 4.04
2848 3575 7.644157 GTCCACTGAGTTTATTTTGTGTTTCTC 59.356 37.037 0.00 0.00 0.00 2.87
2849 3576 7.480810 GTCCACTGAGTTTATTTTGTGTTTCT 58.519 34.615 0.00 0.00 0.00 2.52
2850 3577 6.413818 CGTCCACTGAGTTTATTTTGTGTTTC 59.586 38.462 0.00 0.00 0.00 2.78
2851 3578 6.127842 ACGTCCACTGAGTTTATTTTGTGTTT 60.128 34.615 0.00 0.00 0.00 2.83
2852 3579 5.355910 ACGTCCACTGAGTTTATTTTGTGTT 59.644 36.000 0.00 0.00 0.00 3.32
2853 3580 4.879545 ACGTCCACTGAGTTTATTTTGTGT 59.120 37.500 0.00 0.00 0.00 3.72
2854 3581 5.418310 ACGTCCACTGAGTTTATTTTGTG 57.582 39.130 0.00 0.00 0.00 3.33
2855 3582 4.514066 GGACGTCCACTGAGTTTATTTTGT 59.486 41.667 29.75 0.00 35.64 2.83
2856 3583 4.083484 GGGACGTCCACTGAGTTTATTTTG 60.083 45.833 34.40 0.00 37.91 2.44
2857 3584 4.070009 GGGACGTCCACTGAGTTTATTTT 58.930 43.478 34.40 0.00 37.91 1.82
2858 3585 3.071892 TGGGACGTCCACTGAGTTTATTT 59.928 43.478 34.40 0.00 41.46 1.40
2859 3586 2.635915 TGGGACGTCCACTGAGTTTATT 59.364 45.455 34.40 0.00 41.46 1.40
2860 3587 2.233922 CTGGGACGTCCACTGAGTTTAT 59.766 50.000 34.40 0.00 41.46 1.40
2861 3588 1.616865 CTGGGACGTCCACTGAGTTTA 59.383 52.381 34.40 8.83 41.46 2.01
2862 3589 0.393077 CTGGGACGTCCACTGAGTTT 59.607 55.000 34.40 0.00 41.46 2.66
2863 3590 1.472662 CCTGGGACGTCCACTGAGTT 61.473 60.000 34.40 0.00 41.46 3.01
2864 3591 1.908793 CCTGGGACGTCCACTGAGT 60.909 63.158 34.40 0.00 41.46 3.41
2865 3592 1.878656 GACCTGGGACGTCCACTGAG 61.879 65.000 34.40 22.27 41.46 3.35
2866 3593 1.906824 GACCTGGGACGTCCACTGA 60.907 63.158 34.40 14.80 41.46 3.41
2867 3594 1.908793 AGACCTGGGACGTCCACTG 60.909 63.158 34.40 24.47 41.46 3.66
2868 3595 1.908793 CAGACCTGGGACGTCCACT 60.909 63.158 34.40 20.73 41.46 4.00
2869 3596 2.207924 ACAGACCTGGGACGTCCAC 61.208 63.158 34.40 23.56 41.46 4.02
2870 3597 2.200370 ACAGACCTGGGACGTCCA 59.800 61.111 34.40 19.72 44.79 4.02
2871 3598 2.657237 CACAGACCTGGGACGTCC 59.343 66.667 27.04 27.04 35.61 4.79
2872 3599 2.657237 CCACAGACCTGGGACGTC 59.343 66.667 7.13 7.13 35.61 4.34
2878 3605 0.618680 TCATCCTCCCACAGACCTGG 60.619 60.000 1.82 0.00 34.19 4.45
2879 3606 0.539051 GTCATCCTCCCACAGACCTG 59.461 60.000 0.00 0.00 0.00 4.00
2880 3607 0.117140 TGTCATCCTCCCACAGACCT 59.883 55.000 0.00 0.00 0.00 3.85
2881 3608 0.250513 GTGTCATCCTCCCACAGACC 59.749 60.000 0.00 0.00 0.00 3.85
2882 3609 0.108615 CGTGTCATCCTCCCACAGAC 60.109 60.000 0.00 0.00 0.00 3.51
2883 3610 1.888436 GCGTGTCATCCTCCCACAGA 61.888 60.000 0.00 0.00 0.00 3.41
2884 3611 1.448540 GCGTGTCATCCTCCCACAG 60.449 63.158 0.00 0.00 0.00 3.66
2885 3612 2.171209 CTGCGTGTCATCCTCCCACA 62.171 60.000 0.00 0.00 0.00 4.17
2886 3613 1.448540 CTGCGTGTCATCCTCCCAC 60.449 63.158 0.00 0.00 0.00 4.61
2887 3614 2.659063 CCTGCGTGTCATCCTCCCA 61.659 63.158 0.00 0.00 0.00 4.37
2888 3615 2.187946 CCTGCGTGTCATCCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
2889 3616 2.512515 GCCTGCGTGTCATCCTCC 60.513 66.667 0.00 0.00 0.00 4.30
2890 3617 2.512515 GGCCTGCGTGTCATCCTC 60.513 66.667 0.00 0.00 0.00 3.71
2891 3618 3.005539 AGGCCTGCGTGTCATCCT 61.006 61.111 3.11 0.00 0.00 3.24
2892 3619 2.512515 GAGGCCTGCGTGTCATCC 60.513 66.667 12.00 0.00 0.00 3.51
2893 3620 2.887568 CGAGGCCTGCGTGTCATC 60.888 66.667 12.00 0.00 0.00 2.92
2894 3621 3.362399 CTCGAGGCCTGCGTGTCAT 62.362 63.158 12.00 0.00 0.00 3.06
2895 3622 4.056125 CTCGAGGCCTGCGTGTCA 62.056 66.667 12.00 0.00 0.00 3.58
2924 3651 4.774503 AGAAGCTGCGCTCTGGGC 62.775 66.667 9.73 5.38 38.25 5.36
2925 3652 2.046507 AAGAAGCTGCGCTCTGGG 60.047 61.111 9.73 0.00 38.25 4.45
2926 3653 0.673022 AAGAAGAAGCTGCGCTCTGG 60.673 55.000 9.73 0.00 38.25 3.86
2927 3654 1.136029 CAAAGAAGAAGCTGCGCTCTG 60.136 52.381 9.73 0.00 38.25 3.35
2928 3655 1.155042 CAAAGAAGAAGCTGCGCTCT 58.845 50.000 9.73 2.40 38.25 4.09
2929 3656 1.151668 TCAAAGAAGAAGCTGCGCTC 58.848 50.000 9.73 0.00 38.25 5.03
2930 3657 1.736681 GATCAAAGAAGAAGCTGCGCT 59.263 47.619 9.73 0.00 42.56 5.92
2931 3658 1.736681 AGATCAAAGAAGAAGCTGCGC 59.263 47.619 0.00 0.00 0.00 6.09
2932 3659 4.156915 CAAAGATCAAAGAAGAAGCTGCG 58.843 43.478 0.00 0.00 0.00 5.18
2933 3660 3.919197 GCAAAGATCAAAGAAGAAGCTGC 59.081 43.478 0.00 0.00 0.00 5.25
2934 3661 5.117355 TGCAAAGATCAAAGAAGAAGCTG 57.883 39.130 0.00 0.00 0.00 4.24
2935 3662 5.508657 GGTTGCAAAGATCAAAGAAGAAGCT 60.509 40.000 0.00 0.00 0.00 3.74
2936 3663 4.683320 GGTTGCAAAGATCAAAGAAGAAGC 59.317 41.667 0.00 0.00 0.00 3.86
2937 3664 5.835257 TGGTTGCAAAGATCAAAGAAGAAG 58.165 37.500 0.00 0.00 0.00 2.85
2938 3665 5.850557 TGGTTGCAAAGATCAAAGAAGAA 57.149 34.783 0.00 0.00 0.00 2.52
2939 3666 5.593909 TCTTGGTTGCAAAGATCAAAGAAGA 59.406 36.000 0.00 0.00 0.00 2.87
2940 3667 5.689068 GTCTTGGTTGCAAAGATCAAAGAAG 59.311 40.000 0.00 0.00 36.14 2.85
2941 3668 5.591099 GTCTTGGTTGCAAAGATCAAAGAA 58.409 37.500 0.00 0.00 36.14 2.52
2942 3669 4.261155 CGTCTTGGTTGCAAAGATCAAAGA 60.261 41.667 0.00 0.09 36.14 2.52
2943 3670 3.976942 CGTCTTGGTTGCAAAGATCAAAG 59.023 43.478 0.00 0.00 36.14 2.77
2944 3671 3.795150 GCGTCTTGGTTGCAAAGATCAAA 60.795 43.478 0.00 0.00 36.14 2.69
2945 3672 2.287547 GCGTCTTGGTTGCAAAGATCAA 60.288 45.455 0.00 3.30 36.14 2.57
2946 3673 1.266718 GCGTCTTGGTTGCAAAGATCA 59.733 47.619 0.00 0.00 36.14 2.92
2947 3674 1.537202 AGCGTCTTGGTTGCAAAGATC 59.463 47.619 0.00 0.00 36.14 2.75
2948 3675 1.609208 AGCGTCTTGGTTGCAAAGAT 58.391 45.000 0.00 0.00 36.14 2.40
2949 3676 2.143122 CTAGCGTCTTGGTTGCAAAGA 58.857 47.619 0.00 0.00 0.00 2.52
2950 3677 1.873591 ACTAGCGTCTTGGTTGCAAAG 59.126 47.619 0.00 0.00 0.00 2.77
2951 3678 1.961793 ACTAGCGTCTTGGTTGCAAA 58.038 45.000 0.00 0.00 0.00 3.68
2952 3679 1.871039 GAACTAGCGTCTTGGTTGCAA 59.129 47.619 0.00 0.00 0.00 4.08
2953 3680 1.070134 AGAACTAGCGTCTTGGTTGCA 59.930 47.619 0.00 0.00 0.00 4.08
2954 3681 1.797025 AGAACTAGCGTCTTGGTTGC 58.203 50.000 0.00 0.00 0.00 4.17
2955 3682 7.009357 GTCTAAATAGAACTAGCGTCTTGGTTG 59.991 40.741 2.09 0.00 33.47 3.77
2956 3683 7.034397 GTCTAAATAGAACTAGCGTCTTGGTT 58.966 38.462 2.09 0.00 33.47 3.67
2957 3684 6.405619 GGTCTAAATAGAACTAGCGTCTTGGT 60.406 42.308 2.09 0.00 37.08 3.67
2958 3685 5.978322 GGTCTAAATAGAACTAGCGTCTTGG 59.022 44.000 2.09 0.00 37.08 3.61
2959 3686 6.472808 GTGGTCTAAATAGAACTAGCGTCTTG 59.527 42.308 7.01 0.00 40.66 3.02
2960 3687 6.152323 TGTGGTCTAAATAGAACTAGCGTCTT 59.848 38.462 7.01 0.00 40.66 3.01
2961 3688 5.651139 TGTGGTCTAAATAGAACTAGCGTCT 59.349 40.000 7.01 2.37 40.66 4.18
2962 3689 5.888105 TGTGGTCTAAATAGAACTAGCGTC 58.112 41.667 7.01 0.00 40.66 5.19
2963 3690 5.909621 TGTGGTCTAAATAGAACTAGCGT 57.090 39.130 7.01 0.00 40.66 5.07
2964 3691 5.232414 GCTTGTGGTCTAAATAGAACTAGCG 59.768 44.000 7.01 0.00 40.66 4.26
2965 3692 6.342111 AGCTTGTGGTCTAAATAGAACTAGC 58.658 40.000 15.07 15.07 40.66 3.42
2966 3693 8.779354 AAAGCTTGTGGTCTAAATAGAACTAG 57.221 34.615 0.00 3.97 40.66 2.57
2967 3694 9.569122 AAAAAGCTTGTGGTCTAAATAGAACTA 57.431 29.630 0.00 0.00 40.66 2.24
2968 3695 8.352942 CAAAAAGCTTGTGGTCTAAATAGAACT 58.647 33.333 0.00 0.00 40.66 3.01
2969 3696 8.349983 TCAAAAAGCTTGTGGTCTAAATAGAAC 58.650 33.333 0.00 0.00 40.44 3.01
2970 3697 8.458573 TCAAAAAGCTTGTGGTCTAAATAGAA 57.541 30.769 0.00 0.00 33.47 2.10
2971 3698 8.349983 GTTCAAAAAGCTTGTGGTCTAAATAGA 58.650 33.333 0.00 0.00 0.00 1.98
2972 3699 8.352942 AGTTCAAAAAGCTTGTGGTCTAAATAG 58.647 33.333 0.00 0.00 0.00 1.73
2973 3700 8.232913 AGTTCAAAAAGCTTGTGGTCTAAATA 57.767 30.769 0.00 0.00 0.00 1.40
2974 3701 7.112452 AGTTCAAAAAGCTTGTGGTCTAAAT 57.888 32.000 0.00 0.00 0.00 1.40
2975 3702 6.524101 AGTTCAAAAAGCTTGTGGTCTAAA 57.476 33.333 0.00 0.00 0.00 1.85
2976 3703 6.524101 AAGTTCAAAAAGCTTGTGGTCTAA 57.476 33.333 0.00 0.00 0.00 2.10
2977 3704 6.524101 AAAGTTCAAAAAGCTTGTGGTCTA 57.476 33.333 0.00 0.00 0.00 2.59
2978 3705 5.405935 AAAGTTCAAAAAGCTTGTGGTCT 57.594 34.783 0.00 1.68 0.00 3.85
2979 3706 6.330278 ACTAAAGTTCAAAAAGCTTGTGGTC 58.670 36.000 0.00 0.00 0.00 4.02
3141 3868 6.310069 GTACCCATGTACAGACAACTTGTCC 61.310 48.000 16.81 4.07 45.50 4.02
3479 4211 5.659079 AGTAGCTTTCCTGTAGCAGATAGTT 59.341 40.000 0.00 0.00 41.11 2.24
3490 4222 2.028930 CGTTCCTGAGTAGCTTTCCTGT 60.029 50.000 0.00 0.00 0.00 4.00
3751 4483 4.405358 AGAGGAAGTTGGCTCTCTATCTTG 59.595 45.833 0.00 0.00 35.13 3.02
4299 5031 8.726988 CGTTTCTTCCAATATCTACAAGGAAAA 58.273 33.333 0.00 0.00 37.86 2.29
4362 5094 8.690840 GTGCATAACAGAGTGAATTGTAAAAAC 58.309 33.333 0.00 0.00 0.00 2.43
4422 5154 7.930217 TCACTTGTCTTTTTGGTTCTCAATAG 58.070 34.615 0.00 0.00 34.98 1.73
4468 5200 1.135859 CGCTCCATTCACTGTTCAAGC 60.136 52.381 0.00 0.00 0.00 4.01
4529 5261 5.536538 TGTGCACACCTACAAAATTCCAATA 59.463 36.000 17.42 0.00 0.00 1.90
4546 5278 3.913548 GGACATGTTACAATGTGCACA 57.086 42.857 24.08 24.08 45.32 4.57
4662 5394 7.598493 CCAAAAAGTAACATCGGTCAAATTCAT 59.402 33.333 0.00 0.00 0.00 2.57
4786 5518 7.172342 ACAAACTAATACCACAATTAGCCTCA 58.828 34.615 4.02 0.00 41.29 3.86
4841 5573 2.547211 AGAAGCATAATCATGTCTGCGC 59.453 45.455 0.00 0.00 39.57 6.09
4846 5578 5.746307 TGCAGAAGAAGCATAATCATGTC 57.254 39.130 0.00 0.00 37.02 3.06
4911 5643 8.946797 TCTTCTGATTCAGATACCATATCAGA 57.053 34.615 16.82 10.28 45.57 3.27
5111 5843 5.338632 TCATCACTAGACCTTGGTCCTTTA 58.661 41.667 15.44 2.26 0.00 1.85
5284 6016 7.332557 TCCACCGCAACTATCTTTATTAGAAA 58.667 34.615 0.00 0.00 36.22 2.52
5792 6541 4.037208 ACAATATGACTGCCAGCATTTAGC 59.963 41.667 6.88 0.00 46.19 3.09
5961 6714 6.494893 TGAACAGCAGTTATACAAACCATC 57.505 37.500 0.00 0.00 38.30 3.51
6073 6827 2.441750 AGAAAACCCACAGGAGCAGTAA 59.558 45.455 0.00 0.00 36.73 2.24
6248 7002 1.354031 TCATTTGTGAAGGCTGGGCTA 59.646 47.619 0.00 0.00 0.00 3.93
6527 7281 0.114954 ACATTTCCTGGCACCCACAT 59.885 50.000 0.00 0.00 0.00 3.21
6748 7502 7.609760 TTATATGATCACTTTCACTTTGCGT 57.390 32.000 0.00 0.00 0.00 5.24
6875 7672 2.745968 TGAAGCCAGGGTCAAGTTTTT 58.254 42.857 0.00 0.00 0.00 1.94
6876 7673 2.452600 TGAAGCCAGGGTCAAGTTTT 57.547 45.000 0.00 0.00 0.00 2.43
6877 7674 2.683211 ATGAAGCCAGGGTCAAGTTT 57.317 45.000 0.00 0.00 0.00 2.66
6878 7675 2.629617 CAAATGAAGCCAGGGTCAAGTT 59.370 45.455 0.00 0.00 0.00 2.66
6879 7676 2.242043 CAAATGAAGCCAGGGTCAAGT 58.758 47.619 0.00 0.00 0.00 3.16
6880 7677 2.242043 ACAAATGAAGCCAGGGTCAAG 58.758 47.619 0.00 0.00 0.00 3.02
6881 7678 2.380064 ACAAATGAAGCCAGGGTCAA 57.620 45.000 0.00 0.00 0.00 3.18
6882 7679 2.380064 AACAAATGAAGCCAGGGTCA 57.620 45.000 0.00 0.00 0.00 4.02
6883 7680 5.405935 AATTAACAAATGAAGCCAGGGTC 57.594 39.130 0.00 0.00 0.00 4.46
6884 7681 6.667414 TGATAATTAACAAATGAAGCCAGGGT 59.333 34.615 0.00 0.00 0.00 4.34
6885 7682 7.111247 TGATAATTAACAAATGAAGCCAGGG 57.889 36.000 0.00 0.00 0.00 4.45
7010 7807 2.223572 GCAAACATCCGGATCACATTCC 60.224 50.000 15.88 0.00 0.00 3.01
7155 7952 7.209471 ACTAAAACACGCCATAAATCTGAAA 57.791 32.000 0.00 0.00 0.00 2.69
7337 8134 3.521560 ACAGGTAGCGTACAATGATGTG 58.478 45.455 0.00 0.00 40.84 3.21
7497 8294 6.200854 GGTTCTGGTATTGCAAGAAACAAAAG 59.799 38.462 4.94 3.16 42.98 2.27
7623 8420 7.039714 ACCTGGTCATTTAAATCAAAGAGGAAC 60.040 37.037 13.16 4.46 0.00 3.62
7921 8724 5.690409 TCGTAAGATGAAATGAGATTACGGC 59.310 40.000 13.34 0.00 45.01 5.68
8167 8971 3.440173 TGGCAATAGTTTACAGCAGCTTC 59.560 43.478 0.00 0.00 0.00 3.86
8169 8973 3.071874 TGGCAATAGTTTACAGCAGCT 57.928 42.857 0.00 0.00 0.00 4.24
8225 9032 4.722193 AGGCCAACAATCGGTCTG 57.278 55.556 5.01 0.00 37.01 3.51
8290 9097 5.392380 GCTTATTTGTCAGTCATCCACAAGG 60.392 44.000 0.00 0.00 31.81 3.61
8427 9238 3.737559 TTATTGCCATCTTGGTCCACT 57.262 42.857 0.00 0.00 40.46 4.00
8526 9337 2.556189 TGCCGACATTTTGCACAATACT 59.444 40.909 0.00 0.00 0.00 2.12
8543 9354 3.574284 TGGATTCTGAAACATTTGCCG 57.426 42.857 0.00 0.00 0.00 5.69
8586 9397 1.661463 TCATCTCTTCCCAGCTGGTT 58.339 50.000 30.63 4.14 34.77 3.67
8726 9550 6.422100 CCATTTAGTATCCTCACATGAGAACG 59.578 42.308 10.55 0.00 44.74 3.95
8808 9632 2.439156 GCATCCAGCACCCAGGAC 60.439 66.667 0.00 0.00 44.79 3.85
8855 9679 1.203313 GGATAGATGGCCACCCCTCTA 60.203 57.143 8.16 12.41 40.95 2.43
8906 9730 5.376625 AGCAAATGAAGACTCCTGTAACAA 58.623 37.500 0.00 0.00 0.00 2.83
8946 9770 0.530650 TGCCCGAGAGAAATGCGATC 60.531 55.000 0.00 0.00 0.00 3.69
8976 9800 3.895232 ATGCCTCTTAATGACACTCGT 57.105 42.857 0.00 0.00 0.00 4.18
9021 9845 2.998949 GGCGGGGAGTGGAATTCT 59.001 61.111 5.23 0.00 0.00 2.40
9089 9913 7.148590 GGAAACTTCGATTTATTTGCTGCAATT 60.149 33.333 16.77 14.91 0.00 2.32
9101 9925 5.732633 TCCAATACGGGAAACTTCGATTTA 58.267 37.500 0.00 0.00 32.90 1.40
9113 9937 4.340617 AGCTTTTCAATTCCAATACGGGA 58.659 39.130 0.00 0.00 34.36 5.14
9116 9940 6.182039 TCTGAGCTTTTCAATTCCAATACG 57.818 37.500 0.00 0.00 34.81 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.