Multiple sequence alignment - TraesCS4D01G183700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G183700 chr4D 100.000 6677 0 0 1 6677 321807300 321813976 0.000000e+00 12331.0
1 TraesCS4D01G183700 chr4D 90.361 166 14 2 14 178 295569852 295569688 4.050000e-52 217.0
2 TraesCS4D01G183700 chr4D 83.085 201 21 12 17 214 509507804 509507614 3.200000e-38 171.0
3 TraesCS4D01G183700 chr4D 86.364 132 14 3 4034 4163 321811462 321811333 2.510000e-29 141.0
4 TraesCS4D01G183700 chr4B 92.312 3317 146 41 530 3806 399274235 399270988 0.000000e+00 4612.0
5 TraesCS4D01G183700 chr4B 94.291 1016 37 9 5120 6115 399269481 399268467 0.000000e+00 1535.0
6 TraesCS4D01G183700 chr4B 94.467 976 33 5 4165 5119 399270745 399269770 0.000000e+00 1483.0
7 TraesCS4D01G183700 chr4B 92.027 301 20 1 250 546 399274550 399274250 2.880000e-113 420.0
8 TraesCS4D01G183700 chr4B 91.983 237 12 2 3838 4069 399270988 399270754 6.460000e-85 326.0
9 TraesCS4D01G183700 chr4B 97.222 36 1 0 4128 4163 399270754 399270789 2.010000e-05 62.1
10 TraesCS4D01G183700 chr4B 96.970 33 1 0 221 253 399274601 399274569 1.000000e-03 56.5
11 TraesCS4D01G183700 chr4A 91.346 3432 176 48 683 4069 151298058 151294703 0.000000e+00 4580.0
12 TraesCS4D01G183700 chr4A 93.316 748 32 8 5404 6135 151293735 151292990 0.000000e+00 1088.0
13 TraesCS4D01G183700 chr4A 96.537 462 13 3 4899 5358 151294208 151293748 0.000000e+00 761.0
14 TraesCS4D01G183700 chr4A 93.673 490 26 4 4171 4657 151294688 151294201 0.000000e+00 728.0
15 TraesCS4D01G183700 chr4A 93.151 438 19 3 221 650 151298496 151298062 3.400000e-177 632.0
16 TraesCS4D01G183700 chr4A 90.196 204 17 3 6366 6567 716395694 716395896 5.130000e-66 263.0
17 TraesCS4D01G183700 chr4A 86.911 191 20 4 17 206 60355409 60355595 6.780000e-50 209.0
18 TraesCS4D01G183700 chr4A 84.865 185 23 4 17 200 89683620 89683800 1.480000e-41 182.0
19 TraesCS4D01G183700 chr4A 86.747 166 18 3 13 178 477025925 477026086 1.480000e-41 182.0
20 TraesCS4D01G183700 chr4A 93.671 79 4 1 6597 6674 716395900 716395978 4.230000e-22 117.0
21 TraesCS4D01G183700 chr4A 100.000 31 0 0 4133 4163 151294707 151294737 2.600000e-04 58.4
22 TraesCS4D01G183700 chr3D 95.024 422 16 3 6135 6556 596015770 596016186 0.000000e+00 658.0
23 TraesCS4D01G183700 chr3D 94.118 119 5 2 6560 6677 596016157 596016274 5.320000e-41 180.0
24 TraesCS4D01G183700 chr3D 90.476 84 8 0 6129 6212 349899734 349899817 1.970000e-20 111.0
25 TraesCS4D01G183700 chrUn 96.259 294 9 2 6385 6677 263870476 263870184 1.300000e-131 481.0
26 TraesCS4D01G183700 chrUn 96.259 294 9 2 6385 6677 265285516 265285808 1.300000e-131 481.0
27 TraesCS4D01G183700 chrUn 94.944 178 7 2 6135 6310 263874591 263874414 1.830000e-70 278.0
28 TraesCS4D01G183700 chrUn 96.970 165 5 0 6135 6299 265281401 265281565 1.830000e-70 278.0
29 TraesCS4D01G183700 chrUn 92.473 93 4 1 6298 6390 263874397 263874308 5.430000e-26 130.0
30 TraesCS4D01G183700 chrUn 92.473 93 4 1 6298 6390 265281595 265281684 5.430000e-26 130.0
31 TraesCS4D01G183700 chr7B 90.500 200 18 1 16 215 687899041 687898843 5.130000e-66 263.0
32 TraesCS4D01G183700 chr2A 89.756 205 21 0 14 218 4999999 5000203 5.130000e-66 263.0
33 TraesCS4D01G183700 chr7A 92.638 163 10 2 6406 6567 16982241 16982080 4.030000e-57 233.0
34 TraesCS4D01G183700 chr7A 88.591 149 12 4 15 162 490968657 490968513 6.880000e-40 176.0
35 TraesCS4D01G183700 chr7A 84.337 166 22 3 15 180 40953821 40953660 6.930000e-35 159.0
36 TraesCS4D01G183700 chr7A 85.950 121 8 6 6566 6677 16982115 16981995 3.270000e-23 121.0
37 TraesCS4D01G183700 chr3A 80.000 260 14 8 4660 4889 374676000 374675749 2.490000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G183700 chr4D 321807300 321813976 6676 False 12331.000000 12331 100.000000 1 6677 1 chr4D.!!$F1 6676
1 TraesCS4D01G183700 chr4B 399268467 399274601 6134 True 1405.416667 4612 93.675000 221 6115 6 chr4B.!!$R1 5894
2 TraesCS4D01G183700 chr4A 151292990 151298496 5506 True 1557.800000 4580 93.604600 221 6135 5 chr4A.!!$R1 5914
3 TraesCS4D01G183700 chr3D 596015770 596016274 504 False 419.000000 658 94.571000 6135 6677 2 chr3D.!!$F2 542
4 TraesCS4D01G183700 chrUn 263870184 263874591 4407 True 296.333333 481 94.558667 6135 6677 3 chrUn.!!$R1 542
5 TraesCS4D01G183700 chrUn 265281401 265285808 4407 False 296.333333 481 95.234000 6135 6677 3 chrUn.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.033920 CAAGGCAAAAACCCTGGAGC 59.966 55.0 0.00 0.00 31.73 4.70 F
625 692 0.320683 CGGTCACAATCACAGGCAGA 60.321 55.0 0.00 0.00 0.00 4.26 F
918 985 1.093496 GGGCAATCCCGTAAACTCCG 61.093 60.0 0.00 0.00 43.94 4.63 F
1389 1458 2.741878 ATTCACTGGAATTCCGTAGGCG 60.742 50.0 19.57 8.25 40.48 5.52 F
2687 2797 0.181114 ATGCCATTGCGAGGAAGCTA 59.819 50.0 0.00 0.00 41.78 3.32 F
3895 4041 0.881118 CTTAACGTGGGCACATGCTT 59.119 50.0 8.45 4.72 41.70 3.91 F
3940 4086 0.104855 GCATGCGTAGGGATCAGTCA 59.895 55.0 0.00 0.00 0.00 3.41 F
4717 4869 0.389948 ATCTTGGAGACGGACGCAAC 60.390 55.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2204 0.035056 ATAGTTCCAGCTGGGCACAC 60.035 55.000 32.23 21.78 36.21 3.82 R
2189 2299 3.904136 AGGAAAACAATGACTTCTGCG 57.096 42.857 0.00 0.00 0.00 5.18 R
2616 2726 5.355350 CCCAAGACTACTAGAAAATTGCCAG 59.645 44.000 0.00 0.00 0.00 4.85 R
3226 3363 1.167851 TGTATTCCAGCAGTGCAAGC 58.832 50.000 19.20 4.31 0.00 4.01 R
3924 4070 0.535335 GGTTGACTGATCCCTACGCA 59.465 55.000 0.00 0.00 0.00 5.24 R
5222 5683 0.592754 GACCTCGATACGCTGTCAGC 60.593 60.000 15.22 15.22 38.02 4.26 R
5441 5902 0.884704 GCTTGAACCTTCAGCCGTGA 60.885 55.000 0.00 0.00 38.61 4.35 R
6362 6873 0.179084 ATAGATGCACCCGGTTCGTG 60.179 55.000 0.00 2.32 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.603180 GGCTAATCCCCTTTTCATTAAAGAT 57.397 36.000 0.00 0.00 45.00 2.40
55 56 8.706322 GGCTAATCCCCTTTTCATTAAAGATA 57.294 34.615 0.00 0.00 45.00 1.98
56 57 9.314133 GGCTAATCCCCTTTTCATTAAAGATAT 57.686 33.333 0.00 0.00 45.00 1.63
76 77 8.115490 AGATATAATGGAAATACAGCCAAAGC 57.885 34.615 0.00 0.00 37.78 3.51
77 78 3.893326 AATGGAAATACAGCCAAAGCC 57.107 42.857 0.00 0.00 41.25 4.35
78 79 2.300956 TGGAAATACAGCCAAAGCCA 57.699 45.000 0.00 0.00 41.25 4.75
79 80 2.603021 TGGAAATACAGCCAAAGCCAA 58.397 42.857 0.00 0.00 41.25 4.52
80 81 2.562298 TGGAAATACAGCCAAAGCCAAG 59.438 45.455 0.00 0.00 41.25 3.61
81 82 2.562738 GGAAATACAGCCAAAGCCAAGT 59.437 45.455 0.00 0.00 41.25 3.16
82 83 3.367395 GGAAATACAGCCAAAGCCAAGTC 60.367 47.826 0.00 0.00 41.25 3.01
83 84 1.839424 ATACAGCCAAAGCCAAGTCC 58.161 50.000 0.00 0.00 41.25 3.85
84 85 0.476338 TACAGCCAAAGCCAAGTCCA 59.524 50.000 0.00 0.00 41.25 4.02
85 86 0.178953 ACAGCCAAAGCCAAGTCCAT 60.179 50.000 0.00 0.00 41.25 3.41
86 87 0.245539 CAGCCAAAGCCAAGTCCATG 59.754 55.000 0.00 0.00 41.25 3.66
87 88 0.112995 AGCCAAAGCCAAGTCCATGA 59.887 50.000 0.00 0.00 41.25 3.07
88 89 0.244721 GCCAAAGCCAAGTCCATGAC 59.755 55.000 0.00 0.00 0.00 3.06
89 90 0.890683 CCAAAGCCAAGTCCATGACC 59.109 55.000 0.00 0.00 32.18 4.02
90 91 1.619654 CAAAGCCAAGTCCATGACCA 58.380 50.000 0.00 0.00 32.18 4.02
91 92 1.962807 CAAAGCCAAGTCCATGACCAA 59.037 47.619 0.00 0.00 32.18 3.67
92 93 2.364970 CAAAGCCAAGTCCATGACCAAA 59.635 45.455 0.00 0.00 32.18 3.28
93 94 1.915141 AGCCAAGTCCATGACCAAAG 58.085 50.000 0.00 0.00 32.18 2.77
94 95 0.890683 GCCAAGTCCATGACCAAAGG 59.109 55.000 0.00 0.00 32.18 3.11
95 96 1.549203 CCAAGTCCATGACCAAAGGG 58.451 55.000 0.00 0.00 41.29 3.95
96 97 1.075374 CCAAGTCCATGACCAAAGGGA 59.925 52.381 0.00 0.00 38.05 4.20
97 98 2.490718 CCAAGTCCATGACCAAAGGGAA 60.491 50.000 0.00 0.00 38.05 3.97
98 99 3.230134 CAAGTCCATGACCAAAGGGAAA 58.770 45.455 0.00 0.00 38.05 3.13
99 100 3.160679 AGTCCATGACCAAAGGGAAAG 57.839 47.619 0.00 0.00 38.05 2.62
100 101 2.716424 AGTCCATGACCAAAGGGAAAGA 59.284 45.455 0.00 0.00 38.05 2.52
101 102 3.084786 GTCCATGACCAAAGGGAAAGAG 58.915 50.000 0.00 0.00 38.05 2.85
102 103 2.041620 TCCATGACCAAAGGGAAAGAGG 59.958 50.000 0.00 0.00 38.05 3.69
103 104 2.041620 CCATGACCAAAGGGAAAGAGGA 59.958 50.000 0.00 0.00 38.05 3.71
104 105 3.500289 CCATGACCAAAGGGAAAGAGGAA 60.500 47.826 0.00 0.00 38.05 3.36
105 106 3.963476 TGACCAAAGGGAAAGAGGAAA 57.037 42.857 0.00 0.00 38.05 3.13
106 107 4.258457 TGACCAAAGGGAAAGAGGAAAA 57.742 40.909 0.00 0.00 38.05 2.29
107 108 4.215109 TGACCAAAGGGAAAGAGGAAAAG 58.785 43.478 0.00 0.00 38.05 2.27
108 109 2.965831 ACCAAAGGGAAAGAGGAAAAGC 59.034 45.455 0.00 0.00 38.05 3.51
109 110 2.029918 CCAAAGGGAAAGAGGAAAAGCG 60.030 50.000 0.00 0.00 35.59 4.68
110 111 2.884639 CAAAGGGAAAGAGGAAAAGCGA 59.115 45.455 0.00 0.00 0.00 4.93
111 112 2.481289 AGGGAAAGAGGAAAAGCGAG 57.519 50.000 0.00 0.00 0.00 5.03
112 113 1.700186 AGGGAAAGAGGAAAAGCGAGT 59.300 47.619 0.00 0.00 0.00 4.18
113 114 2.106684 AGGGAAAGAGGAAAAGCGAGTT 59.893 45.455 0.00 0.00 0.00 3.01
114 115 2.484651 GGGAAAGAGGAAAAGCGAGTTC 59.515 50.000 0.00 0.00 0.00 3.01
115 116 3.139077 GGAAAGAGGAAAAGCGAGTTCA 58.861 45.455 0.00 0.00 0.00 3.18
116 117 3.564225 GGAAAGAGGAAAAGCGAGTTCAA 59.436 43.478 0.00 0.00 0.00 2.69
117 118 4.319839 GGAAAGAGGAAAAGCGAGTTCAAG 60.320 45.833 0.00 0.00 0.00 3.02
118 119 2.147150 AGAGGAAAAGCGAGTTCAAGC 58.853 47.619 0.00 0.00 0.00 4.01
119 120 1.873591 GAGGAAAAGCGAGTTCAAGCA 59.126 47.619 0.00 0.00 35.48 3.91
120 121 1.604278 AGGAAAAGCGAGTTCAAGCAC 59.396 47.619 0.00 0.00 35.48 4.40
121 122 1.604278 GGAAAAGCGAGTTCAAGCACT 59.396 47.619 0.00 0.00 35.48 4.40
122 123 2.033424 GGAAAAGCGAGTTCAAGCACTT 59.967 45.455 0.00 0.00 35.48 3.16
123 124 3.292423 GAAAAGCGAGTTCAAGCACTTC 58.708 45.455 0.00 0.00 35.48 3.01
124 125 1.953559 AAGCGAGTTCAAGCACTTCA 58.046 45.000 0.00 0.00 35.48 3.02
125 126 1.506493 AGCGAGTTCAAGCACTTCAG 58.494 50.000 0.00 0.00 35.48 3.02
126 127 0.514691 GCGAGTTCAAGCACTTCAGG 59.485 55.000 0.00 0.00 0.00 3.86
127 128 1.151668 CGAGTTCAAGCACTTCAGGG 58.848 55.000 0.00 0.00 0.00 4.45
128 129 1.270305 CGAGTTCAAGCACTTCAGGGA 60.270 52.381 0.00 0.00 0.00 4.20
129 130 2.806745 CGAGTTCAAGCACTTCAGGGAA 60.807 50.000 0.00 0.00 0.00 3.97
130 131 3.214328 GAGTTCAAGCACTTCAGGGAAA 58.786 45.455 0.00 0.00 0.00 3.13
131 132 2.952310 AGTTCAAGCACTTCAGGGAAAC 59.048 45.455 0.00 0.00 0.00 2.78
151 152 2.863153 GCTGTGAGCGTTCGCAAT 59.137 55.556 16.39 0.00 42.84 3.56
152 153 1.225854 GCTGTGAGCGTTCGCAATC 60.226 57.895 16.39 7.79 42.84 2.67
153 154 1.057822 CTGTGAGCGTTCGCAATCG 59.942 57.895 16.39 1.78 42.84 3.34
154 155 1.344226 CTGTGAGCGTTCGCAATCGA 61.344 55.000 16.39 0.00 42.84 3.59
162 163 3.483665 TCGCAATCGAAACGCCCG 61.484 61.111 0.00 0.00 42.44 6.13
164 165 3.799755 GCAATCGAAACGCCCGCT 61.800 61.111 0.00 0.00 0.00 5.52
165 166 2.457778 GCAATCGAAACGCCCGCTA 61.458 57.895 0.00 0.00 0.00 4.26
166 167 1.347221 CAATCGAAACGCCCGCTAC 59.653 57.895 0.00 0.00 0.00 3.58
167 168 1.079681 AATCGAAACGCCCGCTACA 60.080 52.632 0.00 0.00 0.00 2.74
168 169 0.671163 AATCGAAACGCCCGCTACAA 60.671 50.000 0.00 0.00 0.00 2.41
169 170 1.082117 ATCGAAACGCCCGCTACAAG 61.082 55.000 0.00 0.00 0.00 3.16
170 171 2.736682 CGAAACGCCCGCTACAAGG 61.737 63.158 0.00 0.00 0.00 3.61
171 172 3.035576 GAAACGCCCGCTACAAGGC 62.036 63.158 0.00 0.00 46.17 4.35
177 178 3.489813 CCCGCTACAAGGCAAAAAC 57.510 52.632 0.00 0.00 0.00 2.43
178 179 0.038618 CCCGCTACAAGGCAAAAACC 60.039 55.000 0.00 0.00 0.00 3.27
179 180 0.038618 CCGCTACAAGGCAAAAACCC 60.039 55.000 0.00 0.00 0.00 4.11
180 181 0.958822 CGCTACAAGGCAAAAACCCT 59.041 50.000 0.00 0.00 0.00 4.34
181 182 1.335872 CGCTACAAGGCAAAAACCCTG 60.336 52.381 0.00 0.00 31.73 4.45
182 183 1.000843 GCTACAAGGCAAAAACCCTGG 59.999 52.381 0.00 0.00 31.73 4.45
183 184 2.593026 CTACAAGGCAAAAACCCTGGA 58.407 47.619 0.00 0.00 31.73 3.86
184 185 1.413118 ACAAGGCAAAAACCCTGGAG 58.587 50.000 0.00 0.00 31.73 3.86
185 186 0.033920 CAAGGCAAAAACCCTGGAGC 59.966 55.000 0.00 0.00 31.73 4.70
186 187 0.398381 AAGGCAAAAACCCTGGAGCA 60.398 50.000 0.00 0.00 31.73 4.26
187 188 1.115326 AGGCAAAAACCCTGGAGCAC 61.115 55.000 0.00 0.00 0.00 4.40
188 189 1.115326 GGCAAAAACCCTGGAGCACT 61.115 55.000 0.00 0.00 0.00 4.40
189 190 1.616159 GCAAAAACCCTGGAGCACTA 58.384 50.000 0.00 0.00 0.00 2.74
190 191 1.960689 GCAAAAACCCTGGAGCACTAA 59.039 47.619 0.00 0.00 0.00 2.24
191 192 2.562738 GCAAAAACCCTGGAGCACTAAT 59.437 45.455 0.00 0.00 0.00 1.73
192 193 3.761752 GCAAAAACCCTGGAGCACTAATA 59.238 43.478 0.00 0.00 0.00 0.98
193 194 4.219725 GCAAAAACCCTGGAGCACTAATAA 59.780 41.667 0.00 0.00 0.00 1.40
194 195 5.709966 CAAAAACCCTGGAGCACTAATAAC 58.290 41.667 0.00 0.00 0.00 1.89
195 196 4.650972 AAACCCTGGAGCACTAATAACA 57.349 40.909 0.00 0.00 0.00 2.41
196 197 3.629142 ACCCTGGAGCACTAATAACAC 57.371 47.619 0.00 0.00 0.00 3.32
197 198 2.093658 ACCCTGGAGCACTAATAACACG 60.094 50.000 0.00 0.00 0.00 4.49
198 199 1.933853 CCTGGAGCACTAATAACACGC 59.066 52.381 0.00 0.00 0.00 5.34
199 200 2.616960 CTGGAGCACTAATAACACGCA 58.383 47.619 0.00 0.00 0.00 5.24
200 201 2.604914 CTGGAGCACTAATAACACGCAG 59.395 50.000 0.00 0.00 0.00 5.18
201 202 1.327764 GGAGCACTAATAACACGCAGC 59.672 52.381 0.00 0.00 0.00 5.25
202 203 0.999406 AGCACTAATAACACGCAGCG 59.001 50.000 14.82 14.82 0.00 5.18
203 204 0.996462 GCACTAATAACACGCAGCGA 59.004 50.000 24.65 0.00 0.00 4.93
204 205 1.392168 GCACTAATAACACGCAGCGAA 59.608 47.619 24.65 3.95 0.00 4.70
205 206 2.783316 GCACTAATAACACGCAGCGAAC 60.783 50.000 24.65 0.00 0.00 3.95
206 207 2.410392 CACTAATAACACGCAGCGAACA 59.590 45.455 24.65 3.54 0.00 3.18
207 208 2.666508 ACTAATAACACGCAGCGAACAG 59.333 45.455 24.65 10.64 0.00 3.16
223 224 3.952535 GAACAGCAACAAGTTCGATTGT 58.047 40.909 0.00 0.00 45.18 2.71
312 339 1.134670 GGGCTCCTAACTGCAGTGTAG 60.135 57.143 22.49 21.06 0.00 2.74
361 388 2.095263 GCGGTTATGTTGCTTCATGTGT 60.095 45.455 0.00 0.00 0.00 3.72
485 520 4.787551 TCCATATTCATACCCGCAAGTTT 58.212 39.130 0.00 0.00 0.00 2.66
528 563 0.593618 GGTGATATCTCTCGCAGCGA 59.406 55.000 18.39 18.39 0.00 4.93
542 608 2.723010 CGCAGCGAGTCAAAAATGAGAC 60.723 50.000 9.98 0.00 35.02 3.36
625 692 0.320683 CGGTCACAATCACAGGCAGA 60.321 55.000 0.00 0.00 0.00 4.26
675 742 7.096599 GCGTAATTTGTTGTTTCTTCTCCTTTC 60.097 37.037 0.00 0.00 0.00 2.62
681 748 3.639538 TGTTTCTTCTCCTTTCGACGAG 58.360 45.455 0.00 0.00 0.00 4.18
719 786 2.032634 GCCTCGTGTCCAATCGCAA 61.033 57.895 0.00 0.00 0.00 4.85
774 841 1.263217 CGGTCCGGTGAAACTCAAAAG 59.737 52.381 2.34 0.00 36.74 2.27
834 901 4.649705 TCTCCAACGGCCTCCCCA 62.650 66.667 0.00 0.00 0.00 4.96
918 985 1.093496 GGGCAATCCCGTAAACTCCG 61.093 60.000 0.00 0.00 43.94 4.63
1388 1457 2.919228 ATTCACTGGAATTCCGTAGGC 58.081 47.619 19.57 0.00 40.48 3.93
1389 1458 2.741878 ATTCACTGGAATTCCGTAGGCG 60.742 50.000 19.57 8.25 40.48 5.52
1398 1467 2.963854 CCGTAGGCGCTGCATCTG 60.964 66.667 7.64 0.00 46.14 2.90
1399 1468 3.634072 CGTAGGCGCTGCATCTGC 61.634 66.667 7.64 0.00 42.50 4.26
1417 1486 6.552629 CATCTGCATGCATCCAGAATAATAC 58.447 40.000 23.70 0.00 41.04 1.89
1464 1546 6.520272 ACATCAAGAGATAATGAGGCTACAC 58.480 40.000 0.00 0.00 31.88 2.90
1489 1571 7.923344 ACTGTGCTCTAAAATGCTACTAGTATG 59.077 37.037 2.33 0.00 0.00 2.39
1568 1653 6.313905 CCTTTCTGATCCAGTGTATGTTGTAC 59.686 42.308 0.00 0.00 32.61 2.90
1750 1835 9.362539 TGCTAAACCGACTAGTAGAAAAATTAG 57.637 33.333 3.59 7.95 0.00 1.73
1767 1871 3.313012 TTAGACATGTGGTTCGTCCTG 57.687 47.619 1.15 0.00 37.07 3.86
1874 1983 3.000041 TGTCATGCGTGGATTTGACTAC 59.000 45.455 5.98 0.00 39.33 2.73
1996 2105 8.470040 TGTTAAGTATTTAGCTTCCACTTACG 57.530 34.615 0.00 0.00 32.86 3.18
2054 2163 5.713822 ATTGTTACGATCCGCTAGAAAAC 57.286 39.130 0.00 0.00 0.00 2.43
2065 2175 3.119566 CCGCTAGAAAACGTAGGAAGTCT 60.120 47.826 0.00 0.00 0.00 3.24
2085 2195 9.111702 GAAGTCTTTCGAGATTTTTGATTGAAG 57.888 33.333 0.00 0.00 0.00 3.02
2094 2204 3.731652 TTTTGATTGAAGCCTGTGTGG 57.268 42.857 0.00 0.00 39.35 4.17
2614 2724 8.856490 ATTTTGTGTTGAACTGTGAACTTATC 57.144 30.769 0.00 0.00 0.00 1.75
2616 2726 6.844696 TGTGTTGAACTGTGAACTTATCTC 57.155 37.500 0.00 0.00 0.00 2.75
2687 2797 0.181114 ATGCCATTGCGAGGAAGCTA 59.819 50.000 0.00 0.00 41.78 3.32
2802 2931 3.812053 GCTTGTTCATGTGTCTTCAGAGT 59.188 43.478 0.00 0.00 0.00 3.24
2803 2932 4.274459 GCTTGTTCATGTGTCTTCAGAGTT 59.726 41.667 0.00 0.00 0.00 3.01
2804 2933 5.220931 GCTTGTTCATGTGTCTTCAGAGTTT 60.221 40.000 0.00 0.00 0.00 2.66
2839 2968 9.139734 TCTTAAGAGGTAGTGTGAAGTAGAAAA 57.860 33.333 0.00 0.00 0.00 2.29
2874 3003 6.808008 AGCCATGGAATTATTGTAGATTCG 57.192 37.500 18.40 0.00 33.98 3.34
3001 3137 1.129251 GGTTCACATCTGCACGTGATG 59.871 52.381 22.23 16.54 41.55 3.07
3420 3560 1.826385 AGTTGGTCTGTATGCCTTGC 58.174 50.000 0.00 0.00 0.00 4.01
3428 3568 4.354587 GTCTGTATGCCTTGCTTTAATGC 58.645 43.478 6.39 6.39 0.00 3.56
3435 3575 3.056607 TGCCTTGCTTTAATGCTCCTTTC 60.057 43.478 13.80 1.05 31.98 2.62
3463 3603 7.815840 TTGTCTGGAGATACAATTTTGTCAA 57.184 32.000 0.00 0.00 42.35 3.18
3472 3612 7.021196 AGATACAATTTTGTCAATTTCCGACG 58.979 34.615 0.00 0.00 42.35 5.12
3489 3629 3.362304 CCGACGTTACTTTGTTGTAGTGC 60.362 47.826 0.00 0.00 0.00 4.40
3490 3630 3.362304 CGACGTTACTTTGTTGTAGTGCC 60.362 47.826 0.00 0.00 0.00 5.01
3491 3631 3.800531 ACGTTACTTTGTTGTAGTGCCT 58.199 40.909 0.00 0.00 0.00 4.75
3511 3654 3.593096 CTCTCACAATAGAGCTGCAACA 58.407 45.455 1.02 0.00 36.84 3.33
3573 3718 8.613922 AATCATTTGGGAATAGAAAGGTTCAT 57.386 30.769 0.00 0.00 0.00 2.57
3614 3759 7.230747 TCCCTTGAGTTCAGAATATGTTTTCA 58.769 34.615 0.00 0.00 0.00 2.69
3728 3873 8.887717 AGTGATATATTTTGAGTTTCTGCAGAC 58.112 33.333 18.03 6.69 0.00 3.51
3734 3879 5.751243 TTTGAGTTTCTGCAGACTTTACC 57.249 39.130 18.03 4.57 0.00 2.85
3740 3886 3.857157 TCTGCAGACTTTACCTTTGGT 57.143 42.857 13.74 0.00 40.16 3.67
3821 3967 4.338498 TTTCAGAGAGAACACGCAAGACG 61.338 47.826 0.00 0.00 41.51 4.18
3851 3997 3.055719 CACACCACGCCCCATGAC 61.056 66.667 0.00 0.00 0.00 3.06
3868 4014 1.341209 TGACGCTCACACATCTTCACT 59.659 47.619 0.00 0.00 0.00 3.41
3895 4041 0.881118 CTTAACGTGGGCACATGCTT 59.119 50.000 8.45 4.72 41.70 3.91
3914 4060 6.978343 TGCTTTTCTACTAATGCGTAACAT 57.022 33.333 0.00 0.00 42.30 2.71
3915 4061 6.771076 TGCTTTTCTACTAATGCGTAACATG 58.229 36.000 0.00 0.00 39.60 3.21
3936 4082 1.447217 CCTGCATGCGTAGGGATCA 59.553 57.895 14.09 0.00 41.12 2.92
3937 4083 0.602106 CCTGCATGCGTAGGGATCAG 60.602 60.000 14.09 0.79 41.12 2.90
3938 4084 0.105593 CTGCATGCGTAGGGATCAGT 59.894 55.000 14.09 0.00 0.00 3.41
3940 4086 0.104855 GCATGCGTAGGGATCAGTCA 59.895 55.000 0.00 0.00 0.00 3.41
3942 4088 2.205074 CATGCGTAGGGATCAGTCAAC 58.795 52.381 0.00 0.00 0.00 3.18
3943 4089 0.535335 TGCGTAGGGATCAGTCAACC 59.465 55.000 0.00 0.00 0.00 3.77
3944 4090 0.535335 GCGTAGGGATCAGTCAACCA 59.465 55.000 0.00 0.00 0.00 3.67
3945 4091 1.471676 GCGTAGGGATCAGTCAACCAG 60.472 57.143 0.00 0.00 0.00 4.00
3947 4093 2.695666 CGTAGGGATCAGTCAACCAGAT 59.304 50.000 0.00 0.00 0.00 2.90
4116 4265 7.519032 AAATCGTTCCTGATTTTGGTAGAAA 57.481 32.000 0.00 0.00 44.08 2.52
4117 4266 7.519032 AATCGTTCCTGATTTTGGTAGAAAA 57.481 32.000 0.00 0.00 35.03 2.29
4118 4267 6.945938 TCGTTCCTGATTTTGGTAGAAAAA 57.054 33.333 0.00 0.00 33.76 1.94
4119 4268 7.519032 TCGTTCCTGATTTTGGTAGAAAAAT 57.481 32.000 0.00 0.00 41.34 1.82
4120 4269 8.624367 TCGTTCCTGATTTTGGTAGAAAAATA 57.376 30.769 0.00 0.00 39.31 1.40
4121 4270 9.069082 TCGTTCCTGATTTTGGTAGAAAAATAA 57.931 29.630 0.00 0.00 39.31 1.40
4122 4271 9.685828 CGTTCCTGATTTTGGTAGAAAAATAAA 57.314 29.630 0.00 0.00 39.31 1.40
4150 4299 9.554395 AAATAAATTTTCGTTCCTGATTTTGGT 57.446 25.926 0.00 0.00 0.00 3.67
4152 4301 9.855021 ATAAATTTTCGTTCCTGATTTTGGTAG 57.145 29.630 0.00 0.00 0.00 3.18
4153 4302 7.519032 AATTTTCGTTCCTGATTTTGGTAGA 57.481 32.000 0.00 0.00 0.00 2.59
4154 4303 6.945938 TTTTCGTTCCTGATTTTGGTAGAA 57.054 33.333 0.00 0.00 0.00 2.10
4155 4304 6.945938 TTTCGTTCCTGATTTTGGTAGAAA 57.054 33.333 0.00 0.00 0.00 2.52
4156 4305 5.934935 TCGTTCCTGATTTTGGTAGAAAC 57.065 39.130 0.00 0.00 0.00 2.78
4157 4306 5.369833 TCGTTCCTGATTTTGGTAGAAACA 58.630 37.500 0.00 0.00 0.00 2.83
4158 4307 6.001460 TCGTTCCTGATTTTGGTAGAAACAT 58.999 36.000 0.00 0.00 0.00 2.71
4159 4308 6.148811 TCGTTCCTGATTTTGGTAGAAACATC 59.851 38.462 0.00 0.00 0.00 3.06
4160 4309 6.149474 CGTTCCTGATTTTGGTAGAAACATCT 59.851 38.462 0.00 0.00 0.00 2.90
4163 4312 6.430925 TCCTGATTTTGGTAGAAACATCTGTG 59.569 38.462 0.00 0.00 0.00 3.66
4169 4318 2.744202 GGTAGAAACATCTGTGCCAGTG 59.256 50.000 2.68 3.73 32.61 3.66
4232 4382 3.884895 TGACATGGTACTTGCTTATGGG 58.115 45.455 0.00 0.00 0.00 4.00
4233 4383 3.265737 TGACATGGTACTTGCTTATGGGT 59.734 43.478 0.00 0.00 0.00 4.51
4236 4386 2.442413 TGGTACTTGCTTATGGGTTGC 58.558 47.619 0.00 0.00 0.00 4.17
4489 4639 7.604927 ACACACCGTTGAATATATACAGTTTGT 59.395 33.333 0.00 0.00 0.00 2.83
4625 4777 6.219417 TGTTGGCCATTATTCCATTTACTG 57.781 37.500 6.09 0.00 31.54 2.74
4678 4830 1.213013 CTCGTCTTCCACCACCTCG 59.787 63.158 0.00 0.00 0.00 4.63
4699 4851 1.330655 ACGACGCCATCCCAGAGAAT 61.331 55.000 0.00 0.00 0.00 2.40
4717 4869 0.389948 ATCTTGGAGACGGACGCAAC 60.390 55.000 0.00 0.00 0.00 4.17
4740 4892 0.734253 CGACCAGTTCCTCTTGCGAG 60.734 60.000 0.00 0.00 37.01 5.03
4757 4909 0.539518 GAGGACCAAAGCCTCCTCTC 59.460 60.000 6.47 0.00 46.48 3.20
4813 4974 8.238481 TCGCTTTCCTTTTGCTTTATTTATTG 57.762 30.769 0.00 0.00 0.00 1.90
4814 4975 7.870445 TCGCTTTCCTTTTGCTTTATTTATTGT 59.130 29.630 0.00 0.00 0.00 2.71
5098 5270 1.055849 TTCAGCAGGTTAGTGCAGGA 58.944 50.000 0.00 0.00 46.60 3.86
5169 5630 1.410517 CTAGTAGCAGGCTAGCAGCAA 59.589 52.381 26.63 12.38 44.75 3.91
5204 5665 0.776810 TTGAAGACCCCTGGCAATGA 59.223 50.000 0.00 0.00 0.00 2.57
5222 5683 5.597806 CAATGAAACTGATCATTCCCCATG 58.402 41.667 0.00 0.00 45.77 3.66
5437 5898 2.483106 TCAAGTACTTCTGACCTCGACG 59.517 50.000 4.77 0.00 0.00 5.12
5441 5902 2.979197 CTTCTGACCTCGACGGCGT 61.979 63.158 14.65 14.65 38.98 5.68
5630 6091 4.717280 GGGAGTTATTTCTCAGAGGAGGAA 59.283 45.833 0.00 0.00 42.79 3.36
5682 6143 2.183555 CCCGTGCCGTAGTTCCTC 59.816 66.667 0.00 0.00 0.00 3.71
5767 6228 2.443781 AGGTACCGTGGCCTGAGA 59.556 61.111 6.18 0.00 33.13 3.27
5770 6231 1.043673 GGTACCGTGGCCTGAGAGAT 61.044 60.000 3.32 0.00 0.00 2.75
5794 6255 5.235516 AGTAGTAAGTAGCACGTGCATTTT 58.764 37.500 39.21 29.02 45.16 1.82
5915 6379 4.030216 TGTGTATAGAAGCCCATCAGTCA 58.970 43.478 0.00 0.00 0.00 3.41
5927 6394 3.329386 CCATCAGTCAGTGTGGTTACAG 58.671 50.000 0.00 0.00 37.52 2.74
5959 6427 4.663334 TCTGCAAGTAGTCTAACTCTCCA 58.337 43.478 0.00 0.00 33.76 3.86
5994 6462 4.200283 GTCTCGGAGGAGCGCCAG 62.200 72.222 9.88 0.00 40.26 4.85
6009 6477 2.121645 CCAGCATTGGCCATCTTCC 58.878 57.895 6.09 0.00 42.56 3.46
6010 6478 1.731433 CCAGCATTGGCCATCTTCCG 61.731 60.000 6.09 0.00 42.56 4.30
6011 6479 1.033746 CAGCATTGGCCATCTTCCGT 61.034 55.000 6.09 0.00 42.56 4.69
6013 6481 0.532115 GCATTGGCCATCTTCCGTTT 59.468 50.000 6.09 0.00 0.00 3.60
6014 6482 1.748493 GCATTGGCCATCTTCCGTTTA 59.252 47.619 6.09 0.00 0.00 2.01
6122 6602 0.319211 TCGGTTTCGATTGTGCGTCT 60.319 50.000 0.00 0.00 40.88 4.18
6176 6656 1.849039 ACTGATAGCTGCCTTCCCATT 59.151 47.619 0.00 0.00 0.00 3.16
6192 6672 3.455910 TCCCATTAGACTAGTGCTGCATT 59.544 43.478 5.27 3.75 0.00 3.56
6216 6696 2.978978 TGGATTGAAGTCTCCTGGAACA 59.021 45.455 0.00 0.00 32.47 3.18
6227 6707 5.960811 AGTCTCCTGGAACATCTGATTAGAA 59.039 40.000 0.00 0.00 38.20 2.10
6293 6773 5.080969 TGTTTCCGTCAATTACTCCCTAG 57.919 43.478 0.00 0.00 0.00 3.02
6299 6779 4.098960 CCGTCAATTACTCCCTAGCACTAA 59.901 45.833 0.00 0.00 0.00 2.24
6300 6780 5.221461 CCGTCAATTACTCCCTAGCACTAAT 60.221 44.000 0.00 0.00 0.00 1.73
6341 6852 5.128827 CCTCCTTGCTACCAAATCTGTACTA 59.871 44.000 0.00 0.00 0.00 1.82
6342 6853 5.974108 TCCTTGCTACCAAATCTGTACTAC 58.026 41.667 0.00 0.00 0.00 2.73
6343 6854 5.720041 TCCTTGCTACCAAATCTGTACTACT 59.280 40.000 0.00 0.00 0.00 2.57
6362 6873 2.103263 ACTAGGGGAAACGATGCATCTC 59.897 50.000 23.73 14.51 0.00 2.75
6363 6874 0.911769 AGGGGAAACGATGCATCTCA 59.088 50.000 23.73 0.00 0.00 3.27
6427 10775 5.276270 GCACCATGCATGTTCTATTAACAG 58.724 41.667 24.58 7.67 44.26 3.16
6430 10778 7.415095 GCACCATGCATGTTCTATTAACAGTTA 60.415 37.037 24.58 0.00 44.26 2.24
6487 10835 8.811378 GCTAGAAAATTTGCTTCCATAACAATC 58.189 33.333 3.39 0.00 0.00 2.67
6505 10853 7.642071 AACAATCGGAGATTGTTTCAATTTG 57.358 32.000 26.19 3.98 46.45 2.32
6516 10864 7.769970 AGATTGTTTCAATTTGGTGTGATTTGT 59.230 29.630 0.00 0.00 0.00 2.83
6630 10978 5.750352 ATTTCATGCTTCCATCAAACCTT 57.250 34.783 0.00 0.00 23.69 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.603180 ATCTTTAATGAAAAGGGGATTAGCC 57.397 36.000 0.00 0.00 44.10 3.93
50 51 8.579863 GCTTTGGCTGTATTTCCATTATATCTT 58.420 33.333 0.00 0.00 35.22 2.40
51 52 7.177392 GGCTTTGGCTGTATTTCCATTATATCT 59.823 37.037 0.00 0.00 38.73 1.98
52 53 7.039784 TGGCTTTGGCTGTATTTCCATTATATC 60.040 37.037 0.00 0.00 38.73 1.63
53 54 6.782000 TGGCTTTGGCTGTATTTCCATTATAT 59.218 34.615 0.00 0.00 38.73 0.86
54 55 6.132658 TGGCTTTGGCTGTATTTCCATTATA 58.867 36.000 0.00 0.00 38.73 0.98
55 56 4.961730 TGGCTTTGGCTGTATTTCCATTAT 59.038 37.500 0.00 0.00 38.73 1.28
56 57 4.348486 TGGCTTTGGCTGTATTTCCATTA 58.652 39.130 0.00 0.00 38.73 1.90
57 58 3.172339 TGGCTTTGGCTGTATTTCCATT 58.828 40.909 0.00 0.00 38.73 3.16
58 59 2.818921 TGGCTTTGGCTGTATTTCCAT 58.181 42.857 0.00 0.00 38.73 3.41
59 60 2.300956 TGGCTTTGGCTGTATTTCCA 57.699 45.000 0.00 0.00 38.73 3.53
60 61 2.562738 ACTTGGCTTTGGCTGTATTTCC 59.437 45.455 0.00 0.00 38.73 3.13
61 62 3.367395 GGACTTGGCTTTGGCTGTATTTC 60.367 47.826 0.00 0.00 38.73 2.17
62 63 2.562738 GGACTTGGCTTTGGCTGTATTT 59.437 45.455 0.00 0.00 38.73 1.40
63 64 2.171003 GGACTTGGCTTTGGCTGTATT 58.829 47.619 0.00 0.00 38.73 1.89
64 65 1.075374 TGGACTTGGCTTTGGCTGTAT 59.925 47.619 0.00 0.00 38.73 2.29
65 66 0.476338 TGGACTTGGCTTTGGCTGTA 59.524 50.000 0.00 0.00 38.73 2.74
66 67 0.178953 ATGGACTTGGCTTTGGCTGT 60.179 50.000 0.00 0.00 38.73 4.40
67 68 0.245539 CATGGACTTGGCTTTGGCTG 59.754 55.000 0.00 0.00 38.73 4.85
68 69 0.112995 TCATGGACTTGGCTTTGGCT 59.887 50.000 0.00 0.00 38.73 4.75
69 70 0.244721 GTCATGGACTTGGCTTTGGC 59.755 55.000 0.00 0.00 37.82 4.52
70 71 0.890683 GGTCATGGACTTGGCTTTGG 59.109 55.000 0.00 0.00 32.47 3.28
71 72 1.619654 TGGTCATGGACTTGGCTTTG 58.380 50.000 0.00 0.00 32.47 2.77
72 73 2.380064 TTGGTCATGGACTTGGCTTT 57.620 45.000 0.00 0.00 32.47 3.51
73 74 2.242043 CTTTGGTCATGGACTTGGCTT 58.758 47.619 0.00 0.00 32.47 4.35
74 75 1.548582 CCTTTGGTCATGGACTTGGCT 60.549 52.381 0.00 0.00 32.47 4.75
75 76 0.890683 CCTTTGGTCATGGACTTGGC 59.109 55.000 0.00 0.00 32.47 4.52
76 77 1.075374 TCCCTTTGGTCATGGACTTGG 59.925 52.381 0.00 0.00 32.47 3.61
77 78 2.584835 TCCCTTTGGTCATGGACTTG 57.415 50.000 0.00 0.00 32.47 3.16
78 79 3.140144 TCTTTCCCTTTGGTCATGGACTT 59.860 43.478 0.00 0.00 32.47 3.01
79 80 2.716424 TCTTTCCCTTTGGTCATGGACT 59.284 45.455 0.00 0.00 32.47 3.85
80 81 3.084786 CTCTTTCCCTTTGGTCATGGAC 58.915 50.000 0.00 0.00 0.00 4.02
81 82 2.041620 CCTCTTTCCCTTTGGTCATGGA 59.958 50.000 0.00 0.00 0.00 3.41
82 83 2.041620 TCCTCTTTCCCTTTGGTCATGG 59.958 50.000 0.00 0.00 0.00 3.66
83 84 3.439857 TCCTCTTTCCCTTTGGTCATG 57.560 47.619 0.00 0.00 0.00 3.07
84 85 4.469469 TTTCCTCTTTCCCTTTGGTCAT 57.531 40.909 0.00 0.00 0.00 3.06
85 86 3.963476 TTTCCTCTTTCCCTTTGGTCA 57.037 42.857 0.00 0.00 0.00 4.02
86 87 3.005897 GCTTTTCCTCTTTCCCTTTGGTC 59.994 47.826 0.00 0.00 0.00 4.02
87 88 2.965831 GCTTTTCCTCTTTCCCTTTGGT 59.034 45.455 0.00 0.00 0.00 3.67
88 89 2.029918 CGCTTTTCCTCTTTCCCTTTGG 60.030 50.000 0.00 0.00 0.00 3.28
89 90 2.884639 TCGCTTTTCCTCTTTCCCTTTG 59.115 45.455 0.00 0.00 0.00 2.77
90 91 3.149981 CTCGCTTTTCCTCTTTCCCTTT 58.850 45.455 0.00 0.00 0.00 3.11
91 92 2.106684 ACTCGCTTTTCCTCTTTCCCTT 59.893 45.455 0.00 0.00 0.00 3.95
92 93 1.700186 ACTCGCTTTTCCTCTTTCCCT 59.300 47.619 0.00 0.00 0.00 4.20
93 94 2.186532 ACTCGCTTTTCCTCTTTCCC 57.813 50.000 0.00 0.00 0.00 3.97
94 95 3.139077 TGAACTCGCTTTTCCTCTTTCC 58.861 45.455 0.00 0.00 0.00 3.13
95 96 4.777823 CTTGAACTCGCTTTTCCTCTTTC 58.222 43.478 0.00 0.00 0.00 2.62
96 97 3.003793 GCTTGAACTCGCTTTTCCTCTTT 59.996 43.478 0.00 0.00 0.00 2.52
97 98 2.550180 GCTTGAACTCGCTTTTCCTCTT 59.450 45.455 0.00 0.00 0.00 2.85
98 99 2.147150 GCTTGAACTCGCTTTTCCTCT 58.853 47.619 0.00 0.00 0.00 3.69
99 100 1.873591 TGCTTGAACTCGCTTTTCCTC 59.126 47.619 0.00 0.00 0.00 3.71
100 101 1.604278 GTGCTTGAACTCGCTTTTCCT 59.396 47.619 0.00 0.00 0.00 3.36
101 102 1.604278 AGTGCTTGAACTCGCTTTTCC 59.396 47.619 0.00 0.00 0.00 3.13
102 103 3.242739 TGAAGTGCTTGAACTCGCTTTTC 60.243 43.478 0.00 0.00 33.68 2.29
103 104 2.682856 TGAAGTGCTTGAACTCGCTTTT 59.317 40.909 0.00 0.00 33.68 2.27
104 105 2.288666 TGAAGTGCTTGAACTCGCTTT 58.711 42.857 0.00 0.00 33.68 3.51
105 106 1.869767 CTGAAGTGCTTGAACTCGCTT 59.130 47.619 0.00 0.00 35.93 4.68
106 107 1.506493 CTGAAGTGCTTGAACTCGCT 58.494 50.000 0.00 0.00 0.00 4.93
107 108 0.514691 CCTGAAGTGCTTGAACTCGC 59.485 55.000 0.00 0.00 0.00 5.03
108 109 1.151668 CCCTGAAGTGCTTGAACTCG 58.848 55.000 0.00 0.00 0.00 4.18
109 110 2.550830 TCCCTGAAGTGCTTGAACTC 57.449 50.000 0.00 0.00 0.00 3.01
110 111 2.952310 GTTTCCCTGAAGTGCTTGAACT 59.048 45.455 0.00 0.00 0.00 3.01
111 112 2.034685 GGTTTCCCTGAAGTGCTTGAAC 59.965 50.000 0.00 0.00 0.00 3.18
112 113 2.306847 GGTTTCCCTGAAGTGCTTGAA 58.693 47.619 0.00 0.00 0.00 2.69
113 114 1.478654 GGGTTTCCCTGAAGTGCTTGA 60.479 52.381 0.00 0.00 41.34 3.02
114 115 0.961753 GGGTTTCCCTGAAGTGCTTG 59.038 55.000 0.00 0.00 41.34 4.01
115 116 0.537371 CGGGTTTCCCTGAAGTGCTT 60.537 55.000 3.25 0.00 42.67 3.91
116 117 1.073199 CGGGTTTCCCTGAAGTGCT 59.927 57.895 3.25 0.00 42.67 4.40
117 118 2.626780 GCGGGTTTCCCTGAAGTGC 61.627 63.158 3.25 0.00 42.67 4.40
118 119 1.073199 AGCGGGTTTCCCTGAAGTG 59.927 57.895 3.25 0.00 42.67 3.16
119 120 1.073199 CAGCGGGTTTCCCTGAAGT 59.927 57.895 3.25 0.00 42.67 3.01
120 121 1.073199 ACAGCGGGTTTCCCTGAAG 59.927 57.895 3.25 0.00 42.67 3.02
121 122 1.228124 CACAGCGGGTTTCCCTGAA 60.228 57.895 3.25 0.00 42.67 3.02
122 123 2.111999 CTCACAGCGGGTTTCCCTGA 62.112 60.000 3.25 0.00 42.67 3.86
123 124 1.672356 CTCACAGCGGGTTTCCCTG 60.672 63.158 3.25 0.00 42.67 4.45
124 125 2.750350 CTCACAGCGGGTTTCCCT 59.250 61.111 3.25 0.00 42.67 4.20
125 126 3.056328 GCTCACAGCGGGTTTCCC 61.056 66.667 0.00 0.00 41.09 3.97
134 135 1.225854 GATTGCGAACGCTCACAGC 60.226 57.895 19.32 1.53 42.51 4.40
135 136 1.057822 CGATTGCGAACGCTCACAG 59.942 57.895 19.32 4.69 42.51 3.66
136 137 1.372375 TCGATTGCGAACGCTCACA 60.372 52.632 19.32 2.64 44.78 3.58
137 138 3.459027 TCGATTGCGAACGCTCAC 58.541 55.556 19.32 9.58 44.78 3.51
145 146 3.483665 CGGGCGTTTCGATTGCGA 61.484 61.111 7.75 0.00 46.33 5.10
147 148 2.457778 TAGCGGGCGTTTCGATTGC 61.458 57.895 0.00 0.00 0.00 3.56
148 149 1.347221 GTAGCGGGCGTTTCGATTG 59.653 57.895 0.00 0.00 0.00 2.67
149 150 0.671163 TTGTAGCGGGCGTTTCGATT 60.671 50.000 0.00 0.00 0.00 3.34
150 151 1.079681 TTGTAGCGGGCGTTTCGAT 60.080 52.632 0.00 0.00 0.00 3.59
151 152 1.735198 CTTGTAGCGGGCGTTTCGA 60.735 57.895 0.00 0.00 0.00 3.71
152 153 2.736682 CCTTGTAGCGGGCGTTTCG 61.737 63.158 0.00 0.00 0.00 3.46
153 154 3.035576 GCCTTGTAGCGGGCGTTTC 62.036 63.158 0.00 0.00 38.91 2.78
154 155 3.053896 GCCTTGTAGCGGGCGTTT 61.054 61.111 0.00 0.00 38.91 3.60
159 160 0.038618 GGTTTTTGCCTTGTAGCGGG 60.039 55.000 0.00 0.00 34.65 6.13
160 161 0.038618 GGGTTTTTGCCTTGTAGCGG 60.039 55.000 0.00 0.00 34.65 5.52
161 162 0.958822 AGGGTTTTTGCCTTGTAGCG 59.041 50.000 0.00 0.00 34.65 4.26
162 163 1.000843 CCAGGGTTTTTGCCTTGTAGC 59.999 52.381 0.00 0.00 34.24 3.58
163 164 2.558359 CTCCAGGGTTTTTGCCTTGTAG 59.442 50.000 0.00 0.00 34.24 2.74
164 165 2.593026 CTCCAGGGTTTTTGCCTTGTA 58.407 47.619 0.00 0.00 34.24 2.41
165 166 1.413118 CTCCAGGGTTTTTGCCTTGT 58.587 50.000 0.00 0.00 34.24 3.16
166 167 0.033920 GCTCCAGGGTTTTTGCCTTG 59.966 55.000 0.00 0.00 35.63 3.61
167 168 0.398381 TGCTCCAGGGTTTTTGCCTT 60.398 50.000 0.00 0.00 0.00 4.35
168 169 1.115326 GTGCTCCAGGGTTTTTGCCT 61.115 55.000 0.00 0.00 0.00 4.75
169 170 1.115326 AGTGCTCCAGGGTTTTTGCC 61.115 55.000 0.00 0.00 0.00 4.52
170 171 1.616159 TAGTGCTCCAGGGTTTTTGC 58.384 50.000 0.00 0.00 0.00 3.68
171 172 5.242838 TGTTATTAGTGCTCCAGGGTTTTTG 59.757 40.000 0.00 0.00 0.00 2.44
172 173 5.243060 GTGTTATTAGTGCTCCAGGGTTTTT 59.757 40.000 0.00 0.00 0.00 1.94
173 174 4.765339 GTGTTATTAGTGCTCCAGGGTTTT 59.235 41.667 0.00 0.00 0.00 2.43
174 175 4.332828 GTGTTATTAGTGCTCCAGGGTTT 58.667 43.478 0.00 0.00 0.00 3.27
175 176 3.618997 CGTGTTATTAGTGCTCCAGGGTT 60.619 47.826 0.00 0.00 0.00 4.11
176 177 2.093658 CGTGTTATTAGTGCTCCAGGGT 60.094 50.000 0.00 0.00 0.00 4.34
177 178 2.550978 CGTGTTATTAGTGCTCCAGGG 58.449 52.381 0.00 0.00 0.00 4.45
178 179 1.933853 GCGTGTTATTAGTGCTCCAGG 59.066 52.381 0.00 0.00 0.00 4.45
179 180 2.604914 CTGCGTGTTATTAGTGCTCCAG 59.395 50.000 0.00 0.00 0.00 3.86
180 181 2.616960 CTGCGTGTTATTAGTGCTCCA 58.383 47.619 0.00 0.00 0.00 3.86
181 182 1.327764 GCTGCGTGTTATTAGTGCTCC 59.672 52.381 0.00 0.00 0.00 4.70
182 183 1.005975 CGCTGCGTGTTATTAGTGCTC 60.006 52.381 14.93 0.00 0.00 4.26
183 184 0.999406 CGCTGCGTGTTATTAGTGCT 59.001 50.000 14.93 0.00 0.00 4.40
184 185 0.996462 TCGCTGCGTGTTATTAGTGC 59.004 50.000 22.48 0.00 0.00 4.40
185 186 2.410392 TGTTCGCTGCGTGTTATTAGTG 59.590 45.455 22.48 0.00 0.00 2.74
186 187 2.666508 CTGTTCGCTGCGTGTTATTAGT 59.333 45.455 22.48 0.00 0.00 2.24
187 188 2.534939 GCTGTTCGCTGCGTGTTATTAG 60.535 50.000 22.48 12.09 35.14 1.73
188 189 1.392168 GCTGTTCGCTGCGTGTTATTA 59.608 47.619 22.48 0.00 35.14 0.98
189 190 0.165944 GCTGTTCGCTGCGTGTTATT 59.834 50.000 22.48 0.00 35.14 1.40
190 191 0.948623 TGCTGTTCGCTGCGTGTTAT 60.949 50.000 22.48 0.00 43.78 1.89
191 192 1.154814 TTGCTGTTCGCTGCGTGTTA 61.155 50.000 22.48 0.00 43.78 2.41
192 193 2.468670 TTGCTGTTCGCTGCGTGTT 61.469 52.632 22.48 0.00 43.78 3.32
193 194 2.894879 TTGCTGTTCGCTGCGTGT 60.895 55.556 22.48 0.00 43.78 4.49
194 195 2.425773 GTTGCTGTTCGCTGCGTG 60.426 61.111 22.48 11.57 43.78 5.34
195 196 2.378945 CTTGTTGCTGTTCGCTGCGT 62.379 55.000 22.48 0.00 43.78 5.24
196 197 1.723542 CTTGTTGCTGTTCGCTGCG 60.724 57.895 17.25 17.25 43.78 5.18
197 198 0.248621 AACTTGTTGCTGTTCGCTGC 60.249 50.000 0.00 0.00 41.63 5.25
198 199 1.746760 GAACTTGTTGCTGTTCGCTG 58.253 50.000 0.00 0.00 40.11 5.18
202 203 3.725740 CACAATCGAACTTGTTGCTGTTC 59.274 43.478 1.64 0.00 37.25 3.18
203 204 3.489059 CCACAATCGAACTTGTTGCTGTT 60.489 43.478 1.64 0.00 37.25 3.16
204 205 2.033299 CCACAATCGAACTTGTTGCTGT 59.967 45.455 1.64 0.00 37.25 4.40
205 206 2.290367 TCCACAATCGAACTTGTTGCTG 59.710 45.455 1.64 0.00 37.25 4.41
206 207 2.549754 CTCCACAATCGAACTTGTTGCT 59.450 45.455 1.64 0.00 37.25 3.91
207 208 2.290641 ACTCCACAATCGAACTTGTTGC 59.709 45.455 1.64 0.00 37.25 4.17
208 209 4.201910 ACAACTCCACAATCGAACTTGTTG 60.202 41.667 1.64 7.72 37.25 3.33
209 210 3.945285 ACAACTCCACAATCGAACTTGTT 59.055 39.130 1.64 0.00 37.25 2.83
210 211 3.541632 ACAACTCCACAATCGAACTTGT 58.458 40.909 0.00 0.00 39.91 3.16
211 212 3.362986 CGACAACTCCACAATCGAACTTG 60.363 47.826 0.00 0.00 34.77 3.16
212 213 2.800544 CGACAACTCCACAATCGAACTT 59.199 45.455 0.00 0.00 34.77 2.66
213 214 2.223971 ACGACAACTCCACAATCGAACT 60.224 45.455 0.00 0.00 36.64 3.01
214 215 2.132762 ACGACAACTCCACAATCGAAC 58.867 47.619 0.00 0.00 36.64 3.95
215 216 2.519377 ACGACAACTCCACAATCGAA 57.481 45.000 0.00 0.00 36.64 3.71
216 217 2.555325 ACTACGACAACTCCACAATCGA 59.445 45.455 0.00 0.00 36.64 3.59
217 218 2.661675 CACTACGACAACTCCACAATCG 59.338 50.000 0.00 0.00 38.71 3.34
218 219 3.428870 CACACTACGACAACTCCACAATC 59.571 47.826 0.00 0.00 0.00 2.67
219 220 3.390135 CACACTACGACAACTCCACAAT 58.610 45.455 0.00 0.00 0.00 2.71
223 224 1.037493 AGCACACTACGACAACTCCA 58.963 50.000 0.00 0.00 0.00 3.86
485 520 5.125417 CAGTCCTGAGTTGAAAAACAAGGAA 59.875 40.000 12.11 0.00 38.60 3.36
528 563 6.808008 ATGATCAACGTCTCATTTTTGACT 57.192 33.333 0.00 0.00 30.99 3.41
542 608 6.968004 TTTTGTCTTTCGAAATGATCAACG 57.032 33.333 11.70 6.73 0.00 4.10
625 692 1.871676 GAAAAGAGAAGCGTCCCGTTT 59.128 47.619 0.00 0.00 32.23 3.60
675 742 1.134901 CCGTCTCCTGTTCTCGTCG 59.865 63.158 0.00 0.00 0.00 5.12
681 748 2.126031 GACGCCCGTCTCCTGTTC 60.126 66.667 13.10 0.00 41.57 3.18
719 786 4.443266 GAGTGCTTCGCCTCGGCT 62.443 66.667 6.35 0.00 39.32 5.52
774 841 1.003233 GGCAGGGAAGGTCAGTGTC 60.003 63.158 0.00 0.00 0.00 3.67
918 985 0.890996 CTTTGTGAGTGAGGGGGTGC 60.891 60.000 0.00 0.00 0.00 5.01
1368 1437 2.741878 CGCCTACGGAATTCCAGTGAAT 60.742 50.000 24.09 4.70 38.04 2.57
1373 1442 1.144057 AGCGCCTACGGAATTCCAG 59.856 57.895 24.09 17.86 40.57 3.86
1376 1445 1.160329 ATGCAGCGCCTACGGAATTC 61.160 55.000 2.29 0.00 40.57 2.17
1378 1447 1.595382 GATGCAGCGCCTACGGAAT 60.595 57.895 2.29 0.00 40.57 3.01
1379 1448 2.202878 GATGCAGCGCCTACGGAA 60.203 61.111 2.29 0.00 40.57 4.30
1381 1450 2.963854 CAGATGCAGCGCCTACGG 60.964 66.667 2.29 0.00 40.57 4.02
1382 1451 3.634072 GCAGATGCAGCGCCTACG 61.634 66.667 2.29 0.00 41.59 3.51
1396 1465 6.877855 ACTAGTATTATTCTGGATGCATGCAG 59.122 38.462 34.98 34.98 46.17 4.41
1397 1466 6.772605 ACTAGTATTATTCTGGATGCATGCA 58.227 36.000 25.04 25.04 0.00 3.96
1398 1467 8.824781 CATACTAGTATTATTCTGGATGCATGC 58.175 37.037 12.87 11.82 0.00 4.06
1401 1470 9.088987 TGTCATACTAGTATTATTCTGGATGCA 57.911 33.333 12.87 0.00 0.00 3.96
1443 1515 5.658634 ACAGTGTAGCCTCATTATCTCTTGA 59.341 40.000 0.00 0.00 0.00 3.02
1464 1546 7.383572 CCATACTAGTAGCATTTTAGAGCACAG 59.616 40.741 8.85 0.00 0.00 3.66
1489 1571 7.856145 AGACACTTGATCATCATTCTAAACC 57.144 36.000 0.00 0.00 0.00 3.27
1625 1710 4.137543 CCACTCTAGCTTTGTCAAACCTT 58.862 43.478 0.00 0.00 0.00 3.50
1645 1730 0.684153 GCAGCCCCTTTCATAAGCCA 60.684 55.000 0.00 0.00 0.00 4.75
1694 1779 2.742372 GACGTGCGAACCTGCCAT 60.742 61.111 0.00 0.00 0.00 4.40
1704 1789 0.667487 AAGTGAGGTGATGACGTGCG 60.667 55.000 0.00 0.00 0.00 5.34
1750 1835 2.230508 TCTACAGGACGAACCACATGTC 59.769 50.000 0.00 0.00 42.04 3.06
1767 1871 3.293311 TGTTGACACGTAAGCCTCTAC 57.707 47.619 0.00 0.00 45.62 2.59
1840 1947 7.542890 TCCACGCATGACATATTAACATTTTT 58.457 30.769 0.00 0.00 0.00 1.94
1841 1948 7.094508 TCCACGCATGACATATTAACATTTT 57.905 32.000 0.00 0.00 0.00 1.82
1842 1949 6.691754 TCCACGCATGACATATTAACATTT 57.308 33.333 0.00 0.00 0.00 2.32
1843 1950 6.882610 ATCCACGCATGACATATTAACATT 57.117 33.333 0.00 0.00 0.00 2.71
1844 1951 6.882610 AATCCACGCATGACATATTAACAT 57.117 33.333 0.00 0.00 0.00 2.71
1855 1964 2.267426 CGTAGTCAAATCCACGCATGA 58.733 47.619 0.00 0.00 0.00 3.07
1887 1996 7.171508 ACCGAGTATAACATATAGACGAACGAA 59.828 37.037 0.14 0.00 0.00 3.85
2054 2163 6.365247 TCAAAAATCTCGAAAGACTTCCTACG 59.635 38.462 0.00 0.00 33.32 3.51
2065 2175 6.151691 CAGGCTTCAATCAAAAATCTCGAAA 58.848 36.000 0.00 0.00 0.00 3.46
2085 2195 4.892965 TGGGCACACCACACAGGC 62.893 66.667 0.00 0.00 46.80 4.85
2094 2204 0.035056 ATAGTTCCAGCTGGGCACAC 60.035 55.000 32.23 21.78 36.21 3.82
2171 2281 9.522804 ACTTCTGCGTGTTTTATTGAATTTTTA 57.477 25.926 0.00 0.00 0.00 1.52
2173 2283 7.704472 TGACTTCTGCGTGTTTTATTGAATTTT 59.296 29.630 0.00 0.00 0.00 1.82
2178 2288 5.940192 ATGACTTCTGCGTGTTTTATTGA 57.060 34.783 0.00 0.00 0.00 2.57
2189 2299 3.904136 AGGAAAACAATGACTTCTGCG 57.096 42.857 0.00 0.00 0.00 5.18
2556 2666 7.712639 TGCAATTTCCTTTTATGCAGTAAACAA 59.287 29.630 0.00 0.00 41.67 2.83
2573 2683 5.466393 ACACAAAATACAGCTTGCAATTTCC 59.534 36.000 0.00 0.00 0.00 3.13
2614 2724 6.314896 CCAAGACTACTAGAAAATTGCCAGAG 59.685 42.308 0.00 0.00 0.00 3.35
2616 2726 5.355350 CCCAAGACTACTAGAAAATTGCCAG 59.645 44.000 0.00 0.00 0.00 4.85
2744 2855 9.653287 TTACAAGTATGAGAACCAAATCAGTAG 57.347 33.333 0.00 0.00 0.00 2.57
2854 2983 5.707298 AGGGCGAATCTACAATAATTCCATG 59.293 40.000 0.00 0.00 0.00 3.66
2874 3003 6.280855 ACAAAAACCAGACAAATATAGGGC 57.719 37.500 0.00 0.00 0.00 5.19
2950 3086 6.016192 CACCATAGTATGACCCTAGTAGTGTG 60.016 46.154 11.91 3.08 0.00 3.82
2956 3092 3.898123 CAGCACCATAGTATGACCCTAGT 59.102 47.826 11.91 0.00 0.00 2.57
3001 3137 8.718734 GGAATGTGATAAATAATACGAGGAACC 58.281 37.037 0.00 0.00 0.00 3.62
3046 3182 5.479716 AACCAAAGTTACTTTCTGTCACG 57.520 39.130 7.45 0.00 33.27 4.35
3047 3183 6.750501 GGAAAACCAAAGTTACTTTCTGTCAC 59.249 38.462 7.45 4.28 34.19 3.67
3226 3363 1.167851 TGTATTCCAGCAGTGCAAGC 58.832 50.000 19.20 4.31 0.00 4.01
3420 3560 5.478332 AGACAAAGGGAAAGGAGCATTAAAG 59.522 40.000 0.00 0.00 0.00 1.85
3428 3568 2.639839 TCTCCAGACAAAGGGAAAGGAG 59.360 50.000 0.00 0.00 41.88 3.69
3435 3575 6.209391 ACAAAATTGTATCTCCAGACAAAGGG 59.791 38.462 0.00 0.00 40.16 3.95
3463 3603 5.754890 ACTACAACAAAGTAACGTCGGAAAT 59.245 36.000 0.00 0.00 0.00 2.17
3472 3612 5.050295 GTGAGAGGCACTACAACAAAGTAAC 60.050 44.000 0.00 0.00 44.27 2.50
3489 3629 2.935201 GTTGCAGCTCTATTGTGAGAGG 59.065 50.000 2.81 0.00 42.84 3.69
3490 3630 3.593096 TGTTGCAGCTCTATTGTGAGAG 58.407 45.455 1.17 0.00 45.01 3.20
3491 3631 3.683365 TGTTGCAGCTCTATTGTGAGA 57.317 42.857 1.17 0.00 36.23 3.27
3511 3654 7.880160 TGCATAAAATAACTAGGACTTGCAT 57.120 32.000 0.00 0.00 32.01 3.96
3546 3691 7.673504 TGAACCTTTCTATTCCCAAATGATTCA 59.326 33.333 0.00 0.00 0.00 2.57
3573 3718 2.421725 AGGGATGCACTGGATATTCCA 58.578 47.619 0.00 0.00 45.98 3.53
3821 3967 2.349438 CGTGGTGTGTGTGAGTTTATGC 60.349 50.000 0.00 0.00 0.00 3.14
3851 3997 1.073964 CCAGTGAAGATGTGTGAGCG 58.926 55.000 0.00 0.00 0.00 5.03
3895 4041 5.064198 GGTGCATGTTACGCATTAGTAGAAA 59.936 40.000 0.00 0.00 42.32 2.52
3915 4061 2.947938 ATCCCTACGCATGCAGGTGC 62.948 60.000 19.57 7.06 41.65 5.01
3924 4070 0.535335 GGTTGACTGATCCCTACGCA 59.465 55.000 0.00 0.00 0.00 5.24
3927 4073 7.726033 ATATATCTGGTTGACTGATCCCTAC 57.274 40.000 0.00 0.00 38.52 3.18
3936 4082 7.038729 CCTGTGACCATATATATCTGGTTGACT 60.039 40.741 20.42 1.41 45.70 3.41
3937 4083 7.039011 TCCTGTGACCATATATATCTGGTTGAC 60.039 40.741 20.42 18.90 45.70 3.18
3938 4084 7.016296 TCCTGTGACCATATATATCTGGTTGA 58.984 38.462 20.42 10.29 45.70 3.18
3940 4086 7.872061 TTCCTGTGACCATATATATCTGGTT 57.128 36.000 20.42 7.75 45.70 3.67
3973 4122 3.056250 TGTGACCAACAACATGCAAAACT 60.056 39.130 0.00 0.00 35.24 2.66
4092 4241 7.519032 TTTCTACCAAAATCAGGAACGATTT 57.481 32.000 0.00 0.00 45.35 2.17
4093 4242 7.519032 TTTTCTACCAAAATCAGGAACGATT 57.481 32.000 0.00 0.00 37.20 3.34
4094 4243 7.519032 TTTTTCTACCAAAATCAGGAACGAT 57.481 32.000 0.00 0.00 0.00 3.73
4095 4244 6.945938 TTTTTCTACCAAAATCAGGAACGA 57.054 33.333 0.00 0.00 0.00 3.85
4096 4245 9.685828 TTTATTTTTCTACCAAAATCAGGAACG 57.314 29.630 0.00 0.00 37.50 3.95
4124 4273 9.554395 ACCAAAATCAGGAACGAAAATTTATTT 57.446 25.926 0.00 0.00 0.00 1.40
4126 4275 9.855021 CTACCAAAATCAGGAACGAAAATTTAT 57.145 29.630 0.00 0.00 0.00 1.40
4127 4276 9.069082 TCTACCAAAATCAGGAACGAAAATTTA 57.931 29.630 0.00 0.00 0.00 1.40
4128 4277 7.947282 TCTACCAAAATCAGGAACGAAAATTT 58.053 30.769 0.00 0.00 0.00 1.82
4129 4278 7.519032 TCTACCAAAATCAGGAACGAAAATT 57.481 32.000 0.00 0.00 0.00 1.82
4130 4279 7.519032 TTCTACCAAAATCAGGAACGAAAAT 57.481 32.000 0.00 0.00 0.00 1.82
4131 4280 6.945938 TTCTACCAAAATCAGGAACGAAAA 57.054 33.333 0.00 0.00 0.00 2.29
4132 4281 6.319152 TGTTTCTACCAAAATCAGGAACGAAA 59.681 34.615 0.00 0.00 31.51 3.46
4133 4282 5.823570 TGTTTCTACCAAAATCAGGAACGAA 59.176 36.000 0.00 0.00 31.51 3.85
4134 4283 5.369833 TGTTTCTACCAAAATCAGGAACGA 58.630 37.500 0.00 0.00 31.51 3.85
4135 4284 5.682943 TGTTTCTACCAAAATCAGGAACG 57.317 39.130 0.00 0.00 31.51 3.95
4136 4285 7.040409 ACAGATGTTTCTACCAAAATCAGGAAC 60.040 37.037 0.00 0.00 0.00 3.62
4137 4286 7.004086 ACAGATGTTTCTACCAAAATCAGGAA 58.996 34.615 0.00 0.00 0.00 3.36
4138 4287 6.430925 CACAGATGTTTCTACCAAAATCAGGA 59.569 38.462 0.00 0.00 0.00 3.86
4139 4288 6.615088 CACAGATGTTTCTACCAAAATCAGG 58.385 40.000 0.00 0.00 0.00 3.86
4140 4289 6.088824 GCACAGATGTTTCTACCAAAATCAG 58.911 40.000 0.00 0.00 0.00 2.90
4141 4290 5.048083 GGCACAGATGTTTCTACCAAAATCA 60.048 40.000 0.00 0.00 0.00 2.57
4142 4291 5.048083 TGGCACAGATGTTTCTACCAAAATC 60.048 40.000 0.00 0.00 30.04 2.17
4143 4292 4.832266 TGGCACAGATGTTTCTACCAAAAT 59.168 37.500 0.00 0.00 30.04 1.82
4144 4293 4.211125 TGGCACAGATGTTTCTACCAAAA 58.789 39.130 0.00 0.00 30.04 2.44
4145 4294 3.826524 TGGCACAGATGTTTCTACCAAA 58.173 40.909 0.00 0.00 30.04 3.28
4146 4295 3.500448 TGGCACAGATGTTTCTACCAA 57.500 42.857 0.00 0.00 30.04 3.67
4163 4312 2.443887 AATGTTGAATGCACACTGGC 57.556 45.000 0.00 0.00 0.00 4.85
4169 4318 4.563976 GGCACATCTAAATGTTGAATGCAC 59.436 41.667 8.49 0.00 43.74 4.57
4232 4382 9.908152 ATAACCAAATACTGTAAAGAAAGCAAC 57.092 29.630 0.00 0.00 0.00 4.17
4233 4383 9.906660 CATAACCAAATACTGTAAAGAAAGCAA 57.093 29.630 0.00 0.00 0.00 3.91
4457 4607 1.497991 ATTCAACGGTGTGTGAGACG 58.502 50.000 0.00 0.00 0.00 4.18
4489 4639 8.664798 CAGTCGTATTGGAGTATTTCATCAAAA 58.335 33.333 0.00 0.00 0.00 2.44
4502 4652 2.015736 AGCAAGCAGTCGTATTGGAG 57.984 50.000 0.00 0.00 0.00 3.86
4510 4660 2.068519 TCACATACAAGCAAGCAGTCG 58.931 47.619 0.00 0.00 0.00 4.18
4605 4757 5.765510 AGACAGTAAATGGAATAATGGCCA 58.234 37.500 8.56 8.56 38.78 5.36
4678 4830 3.432051 CTCTGGGATGGCGTCGTCC 62.432 68.421 20.38 20.38 46.03 4.79
4699 4851 1.006571 GTTGCGTCCGTCTCCAAGA 60.007 57.895 0.00 0.00 0.00 3.02
4717 4869 1.006102 AAGAGGAACTGGTCGCACG 60.006 57.895 0.00 0.00 41.55 5.34
4719 4871 1.301716 GCAAGAGGAACTGGTCGCA 60.302 57.895 0.00 0.00 41.55 5.10
4740 4892 1.604915 GGAGAGGAGGCTTTGGTCC 59.395 63.158 0.00 0.00 0.00 4.46
4744 4896 3.002371 GGGGGAGAGGAGGCTTTG 58.998 66.667 0.00 0.00 0.00 2.77
4762 4914 8.637196 AATAAAAAGAAGGAAAGGTGGAGTAG 57.363 34.615 0.00 0.00 0.00 2.57
4763 4915 9.074576 GAAATAAAAAGAAGGAAAGGTGGAGTA 57.925 33.333 0.00 0.00 0.00 2.59
4813 4974 3.166679 AGAGCGGGGGAGAATAGATAAC 58.833 50.000 0.00 0.00 0.00 1.89
4814 4975 3.544698 AGAGCGGGGGAGAATAGATAA 57.455 47.619 0.00 0.00 0.00 1.75
4816 4977 1.974236 CAAGAGCGGGGGAGAATAGAT 59.026 52.381 0.00 0.00 0.00 1.98
4818 4979 1.123928 ACAAGAGCGGGGGAGAATAG 58.876 55.000 0.00 0.00 0.00 1.73
4868 5040 1.079819 AATCCACGTCAGAGCACGG 60.080 57.895 0.00 0.00 44.41 4.94
4948 5120 1.129998 CTCAACAATCTTCTGGCAGCG 59.870 52.381 10.34 3.30 0.00 5.18
5185 5646 0.776810 TCATTGCCAGGGGTCTTCAA 59.223 50.000 0.00 0.00 0.00 2.69
5186 5647 0.776810 TTCATTGCCAGGGGTCTTCA 59.223 50.000 0.00 0.00 0.00 3.02
5188 5649 1.147817 AGTTTCATTGCCAGGGGTCTT 59.852 47.619 0.00 0.00 0.00 3.01
5204 5665 3.028850 CAGCATGGGGAATGATCAGTTT 58.971 45.455 0.09 0.00 38.72 2.66
5222 5683 0.592754 GACCTCGATACGCTGTCAGC 60.593 60.000 15.22 15.22 38.02 4.26
5437 5898 4.681978 ACCTTCAGCCGTGACGCC 62.682 66.667 0.00 0.00 30.10 5.68
5441 5902 0.884704 GCTTGAACCTTCAGCCGTGA 60.885 55.000 0.00 0.00 38.61 4.35
5682 6143 1.667724 CTGCTAATGCTGAACGGAAGG 59.332 52.381 0.00 0.00 40.01 3.46
5714 6175 3.649986 GCTGTGCACGGTGGACAC 61.650 66.667 28.20 20.82 43.78 3.67
5767 6228 4.880120 TGCACGTGCTACTTACTACTATCT 59.120 41.667 37.59 0.00 42.66 1.98
5770 6231 5.571784 AATGCACGTGCTACTTACTACTA 57.428 39.130 37.59 16.09 42.66 1.82
5794 6255 6.770785 GGGGTTCTTATTACAGATATGCACAA 59.229 38.462 0.00 0.00 0.00 3.33
5799 6260 6.313905 GCATCGGGGTTCTTATTACAGATATG 59.686 42.308 0.00 0.00 0.00 1.78
5915 6379 4.207165 AGAACAAATGCTGTAACCACACT 58.793 39.130 0.00 0.00 37.23 3.55
5927 6394 4.453819 AGACTACTTGCAGAGAACAAATGC 59.546 41.667 3.37 0.00 40.40 3.56
5959 6427 3.495331 AGACATCGAGTGGCATCTATCT 58.505 45.455 0.00 0.00 38.81 1.98
5994 6462 0.532115 AAACGGAAGATGGCCAATGC 59.468 50.000 10.96 3.42 0.00 3.56
6009 6477 2.223572 GGCTCCAAGGCATGATTAAACG 60.224 50.000 0.00 0.00 40.97 3.60
6010 6478 3.026694 AGGCTCCAAGGCATGATTAAAC 58.973 45.455 0.00 0.00 44.19 2.01
6011 6479 3.386932 AGGCTCCAAGGCATGATTAAA 57.613 42.857 0.00 0.00 44.19 1.52
6013 6481 3.048600 ACTAGGCTCCAAGGCATGATTA 58.951 45.455 0.00 0.00 44.19 1.75
6014 6482 1.849039 ACTAGGCTCCAAGGCATGATT 59.151 47.619 0.00 0.00 44.19 2.57
6112 6592 1.344438 TCCTTCACTCAGACGCACAAT 59.656 47.619 0.00 0.00 0.00 2.71
6122 6602 1.070786 GTTGCCCGTCCTTCACTCA 59.929 57.895 0.00 0.00 0.00 3.41
6176 6656 3.260632 TCCAACAATGCAGCACTAGTCTA 59.739 43.478 0.00 0.00 0.00 2.59
6192 6672 2.978978 TCCAGGAGACTTCAATCCAACA 59.021 45.455 0.00 0.00 40.21 3.33
6216 6696 4.870021 AGGCCCACTTTTCTAATCAGAT 57.130 40.909 0.00 0.00 0.00 2.90
6227 6707 0.857675 AAACCACCTAGGCCCACTTT 59.142 50.000 9.30 0.00 43.14 2.66
6299 6779 3.956848 GGAGGAAGCATTAAGAAGGCAAT 59.043 43.478 0.00 0.00 41.41 3.56
6300 6780 3.010584 AGGAGGAAGCATTAAGAAGGCAA 59.989 43.478 0.00 0.00 41.41 4.52
6341 6852 2.103263 GAGATGCATCGTTTCCCCTAGT 59.897 50.000 20.67 0.00 0.00 2.57
6342 6853 2.103094 TGAGATGCATCGTTTCCCCTAG 59.897 50.000 20.67 0.00 0.00 3.02
6343 6854 2.115427 TGAGATGCATCGTTTCCCCTA 58.885 47.619 20.67 0.00 0.00 3.53
6362 6873 0.179084 ATAGATGCACCCGGTTCGTG 60.179 55.000 0.00 2.32 0.00 4.35
6363 6874 0.539986 AATAGATGCACCCGGTTCGT 59.460 50.000 0.00 0.00 0.00 3.85
6427 10775 8.720562 AGCAAAATGAATTGGTATGCTTTTAAC 58.279 29.630 0.00 0.00 39.44 2.01
6430 10778 7.748691 AAGCAAAATGAATTGGTATGCTTTT 57.251 28.000 4.41 0.00 46.97 2.27
6487 10835 4.681025 CACACCAAATTGAAACAATCTCCG 59.319 41.667 0.00 0.00 0.00 4.63
6516 10864 9.887629 AATGCAAATAAATTGTCATGTTGGATA 57.112 25.926 0.00 0.00 41.32 2.59
6630 10978 5.127491 AGAGTCCGTAACAATGGTGAAAAA 58.873 37.500 0.00 0.00 0.00 1.94
6634 10982 4.345859 AAAGAGTCCGTAACAATGGTGA 57.654 40.909 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.