Multiple sequence alignment - TraesCS4D01G183500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G183500 chr4D 100.000 5309 0 0 1 5309 321793385 321798693 0.000000e+00 9804
1 TraesCS4D01G183500 chr4D 92.547 161 8 1 1 157 282512269 282512429 1.490000e-55 228
2 TraesCS4D01G183500 chr4D 93.038 158 7 1 1 154 504259429 504259586 1.490000e-55 228
3 TraesCS4D01G183500 chr4A 95.567 2978 82 18 2364 5309 151310215 151307256 0.000000e+00 4723
4 TraesCS4D01G183500 chr4A 94.174 1665 50 19 741 2368 151317343 151315689 0.000000e+00 2494
5 TraesCS4D01G183500 chr4A 93.631 157 10 0 1 157 377128380 377128224 8.890000e-58 235
6 TraesCS4D01G183500 chr4A 92.969 128 9 0 171 298 743249801 743249928 2.520000e-43 187
7 TraesCS4D01G183500 chr4A 92.188 128 10 0 171 298 547986587 547986714 1.170000e-41 182
8 TraesCS4D01G183500 chr4A 92.188 128 10 0 171 298 553719431 553719558 1.170000e-41 182
9 TraesCS4D01G183500 chr4A 91.538 130 9 1 171 298 621477501 621477372 1.520000e-40 178
10 TraesCS4D01G183500 chr4B 94.080 1723 38 16 3074 4775 399288746 399287067 0.000000e+00 2558
11 TraesCS4D01G183500 chr4B 98.050 1282 23 2 1764 3044 399290015 399288735 0.000000e+00 2228
12 TraesCS4D01G183500 chr4B 95.234 1049 26 5 740 1764 399291292 399290244 0.000000e+00 1639
13 TraesCS4D01G183500 chr4B 94.831 561 16 2 4761 5309 399283853 399283294 0.000000e+00 863
14 TraesCS4D01G183500 chr4B 95.455 264 12 0 474 737 115413825 115414088 6.360000e-114 422
15 TraesCS4D01G183500 chr2B 95.833 264 11 0 474 737 135770453 135770190 1.370000e-115 427
16 TraesCS4D01G183500 chr2B 95.437 263 12 0 474 736 509155010 509155272 2.290000e-113 420
17 TraesCS4D01G183500 chr2B 95.113 266 13 0 474 739 509164543 509164808 2.290000e-113 420
18 TraesCS4D01G183500 chr1B 95.833 264 11 0 474 737 555256826 555256563 1.370000e-115 427
19 TraesCS4D01G183500 chr1D 95.455 264 12 0 474 737 194200506 194200769 6.360000e-114 422
20 TraesCS4D01G183500 chr1D 98.788 165 2 0 298 462 438943254 438943418 1.450000e-75 294
21 TraesCS4D01G183500 chr1D 92.547 161 8 1 1 157 203866389 203866229 1.490000e-55 228
22 TraesCS4D01G183500 chr7D 95.076 264 13 0 474 737 294050200 294049937 2.960000e-112 416
23 TraesCS4D01G183500 chr7D 98.225 169 2 1 295 462 115142734 115142566 1.450000e-75 294
24 TraesCS4D01G183500 chr7D 98.788 165 2 0 298 462 541506205 541506369 1.450000e-75 294
25 TraesCS4D01G183500 chr7D 92.857 126 9 0 173 298 266504506 266504381 3.270000e-42 183
26 TraesCS4D01G183500 chr5B 94.737 266 14 0 474 739 639368131 639367866 1.060000e-111 414
27 TraesCS4D01G183500 chr2A 92.553 282 19 2 457 737 618977583 618977863 2.300000e-108 403
28 TraesCS4D01G183500 chr5D 98.795 166 2 0 297 462 29617606 29617441 4.020000e-76 296
29 TraesCS4D01G183500 chr3D 98.795 166 2 0 297 462 609944462 609944627 4.020000e-76 296
30 TraesCS4D01G183500 chr2D 98.788 165 2 0 298 462 619600396 619600560 1.450000e-75 294
31 TraesCS4D01G183500 chr2D 96.988 166 5 0 297 462 380686962 380686797 4.050000e-71 279
32 TraesCS4D01G183500 chr2D 95.758 165 7 0 298 462 308905741 308905905 3.150000e-67 267
33 TraesCS4D01G183500 chr2D 93.168 161 7 1 1 157 557094722 557094562 3.200000e-57 233
34 TraesCS4D01G183500 chr6D 97.576 165 4 0 298 462 62423349 62423513 3.130000e-72 283
35 TraesCS4D01G183500 chr6D 92.547 161 8 2 1 157 28893396 28893556 1.490000e-55 228
36 TraesCS4D01G183500 chr6D 92.547 161 8 1 1 157 377851344 377851184 1.490000e-55 228
37 TraesCS4D01G183500 chr3A 93.789 161 6 1 1 157 63733278 63733438 6.870000e-59 239
38 TraesCS4D01G183500 chr3A 92.994 157 11 0 1 157 616203209 616203365 4.140000e-56 230
39 TraesCS4D01G183500 chr6A 92.969 128 9 0 171 298 467574969 467575096 2.520000e-43 187
40 TraesCS4D01G183500 chr1A 92.969 128 9 0 171 298 552146254 552146127 2.520000e-43 187
41 TraesCS4D01G183500 chr7B 92.188 128 10 0 171 298 107926193 107926066 1.170000e-41 182
42 TraesCS4D01G183500 chr5A 92.188 128 10 0 171 298 328663029 328662902 1.170000e-41 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G183500 chr4D 321793385 321798693 5308 False 9804 9804 100.00000 1 5309 1 chr4D.!!$F2 5308
1 TraesCS4D01G183500 chr4A 151307256 151310215 2959 True 4723 4723 95.56700 2364 5309 1 chr4A.!!$R1 2945
2 TraesCS4D01G183500 chr4A 151315689 151317343 1654 True 2494 2494 94.17400 741 2368 1 chr4A.!!$R2 1627
3 TraesCS4D01G183500 chr4B 399283294 399291292 7998 True 1822 2558 95.54875 740 5309 4 chr4B.!!$R1 4569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 491 0.042581 TCAGGCTGGTCATAGTGGGA 59.957 55.000 15.73 0.0 0.00 4.37 F
1506 1547 0.320697 GGACGGAGGTTGTAGCTGTT 59.679 55.000 0.00 0.0 0.00 3.16 F
1792 2062 2.887152 AGTTCTGAGGTGTGCCAAATTC 59.113 45.455 0.00 0.0 37.19 2.17 F
3455 3730 1.429930 TGGACCAGTTTCAGCAGGTA 58.570 50.000 0.00 0.0 33.77 3.08 F
3738 4023 0.606604 CACGGTACACTTAGGGCACT 59.393 55.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 2062 1.442769 CTGTCCAATGTCTCCAACCG 58.557 55.000 0.00 0.0 0.00 4.44 R
2971 3245 3.072468 CACCAAGCCCCATGCCAG 61.072 66.667 0.00 0.0 42.71 4.85 R
3721 4006 0.892755 TGAGTGCCCTAAGTGTACCG 59.107 55.000 0.00 0.0 0.00 4.02 R
4290 4580 0.040351 ACTAGGTCTCTGCCAGCTGA 59.960 55.000 17.39 0.0 0.00 4.26 R
5184 8728 0.177373 TCTCCTCGTCGCTGCTACTA 59.823 55.000 2.75 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.689224 GTGCTGTGTCATGCATCAC 57.311 52.632 10.76 10.76 41.45 3.06
19 20 1.162698 GTGCTGTGTCATGCATCACT 58.837 50.000 16.78 0.00 41.45 3.41
20 21 1.538512 GTGCTGTGTCATGCATCACTT 59.461 47.619 16.78 0.00 41.45 3.16
21 22 1.808343 TGCTGTGTCATGCATCACTTC 59.192 47.619 16.78 10.25 35.82 3.01
22 23 1.808343 GCTGTGTCATGCATCACTTCA 59.192 47.619 16.78 8.88 35.82 3.02
23 24 2.422479 GCTGTGTCATGCATCACTTCAT 59.578 45.455 16.78 0.00 35.82 2.57
24 25 3.119602 GCTGTGTCATGCATCACTTCATT 60.120 43.478 16.78 0.00 35.82 2.57
25 26 4.617530 GCTGTGTCATGCATCACTTCATTT 60.618 41.667 16.78 0.00 35.82 2.32
26 27 5.392272 GCTGTGTCATGCATCACTTCATTTA 60.392 40.000 16.78 0.00 35.82 1.40
27 28 6.679638 GCTGTGTCATGCATCACTTCATTTAT 60.680 38.462 16.78 0.00 35.82 1.40
28 29 7.160547 TGTGTCATGCATCACTTCATTTATT 57.839 32.000 16.78 0.00 35.82 1.40
29 30 8.278729 TGTGTCATGCATCACTTCATTTATTA 57.721 30.769 16.78 0.00 35.82 0.98
30 31 8.183536 TGTGTCATGCATCACTTCATTTATTAC 58.816 33.333 16.78 0.00 35.82 1.89
31 32 7.374228 GTGTCATGCATCACTTCATTTATTACG 59.626 37.037 1.37 0.00 0.00 3.18
32 33 7.065683 TGTCATGCATCACTTCATTTATTACGT 59.934 33.333 1.37 0.00 0.00 3.57
33 34 7.910162 GTCATGCATCACTTCATTTATTACGTT 59.090 33.333 0.00 0.00 0.00 3.99
34 35 7.909641 TCATGCATCACTTCATTTATTACGTTG 59.090 33.333 0.00 0.00 0.00 4.10
35 36 7.139896 TGCATCACTTCATTTATTACGTTGT 57.860 32.000 0.00 0.00 0.00 3.32
36 37 8.257830 TGCATCACTTCATTTATTACGTTGTA 57.742 30.769 0.00 0.00 0.00 2.41
37 38 8.387354 TGCATCACTTCATTTATTACGTTGTAG 58.613 33.333 0.00 0.00 0.00 2.74
38 39 8.600625 GCATCACTTCATTTATTACGTTGTAGA 58.399 33.333 0.00 0.00 0.00 2.59
53 54 7.962964 ACGTTGTAGATTCATCTTTTCTTGA 57.037 32.000 0.00 0.00 38.32 3.02
54 55 8.553459 ACGTTGTAGATTCATCTTTTCTTGAT 57.447 30.769 0.00 0.00 38.32 2.57
55 56 9.653287 ACGTTGTAGATTCATCTTTTCTTGATA 57.347 29.630 0.00 0.00 38.32 2.15
62 63 9.676861 AGATTCATCTTTTCTTGATATGTGTGA 57.323 29.630 0.00 0.00 31.97 3.58
65 66 8.797350 TCATCTTTTCTTGATATGTGTGATGT 57.203 30.769 0.00 0.00 32.21 3.06
66 67 9.234827 TCATCTTTTCTTGATATGTGTGATGTT 57.765 29.630 0.00 0.00 32.21 2.71
69 70 9.500785 TCTTTTCTTGATATGTGTGATGTTACA 57.499 29.630 0.00 0.00 0.00 2.41
70 71 9.764870 CTTTTCTTGATATGTGTGATGTTACAG 57.235 33.333 0.00 0.00 0.00 2.74
71 72 8.846943 TTTCTTGATATGTGTGATGTTACAGT 57.153 30.769 0.00 0.00 0.00 3.55
72 73 9.936759 TTTCTTGATATGTGTGATGTTACAGTA 57.063 29.630 0.00 0.00 0.00 2.74
73 74 9.936759 TTCTTGATATGTGTGATGTTACAGTAA 57.063 29.630 0.00 0.00 0.00 2.24
74 75 9.366216 TCTTGATATGTGTGATGTTACAGTAAC 57.634 33.333 15.58 15.58 39.11 2.50
75 76 9.371136 CTTGATATGTGTGATGTTACAGTAACT 57.629 33.333 21.56 9.41 39.38 2.24
78 79 8.873215 ATATGTGTGATGTTACAGTAACTAGC 57.127 34.615 21.56 12.59 39.38 3.42
79 80 6.340962 TGTGTGATGTTACAGTAACTAGCT 57.659 37.500 21.56 6.57 39.38 3.32
80 81 7.457024 TGTGTGATGTTACAGTAACTAGCTA 57.543 36.000 21.56 4.25 39.38 3.32
81 82 8.063200 TGTGTGATGTTACAGTAACTAGCTAT 57.937 34.615 21.56 8.59 39.38 2.97
82 83 7.973944 TGTGTGATGTTACAGTAACTAGCTATG 59.026 37.037 21.56 0.00 39.38 2.23
83 84 7.974501 GTGTGATGTTACAGTAACTAGCTATGT 59.025 37.037 21.56 0.00 39.38 2.29
84 85 8.528643 TGTGATGTTACAGTAACTAGCTATGTT 58.471 33.333 21.56 7.75 39.38 2.71
107 108 9.851686 TGTTATAACATGCCTCTCTTCATTAAT 57.148 29.630 14.35 0.00 33.17 1.40
117 118 9.494271 TGCCTCTCTTCATTAATTATATGTCAC 57.506 33.333 0.00 0.00 0.00 3.67
118 119 9.494271 GCCTCTCTTCATTAATTATATGTCACA 57.506 33.333 0.00 0.00 0.00 3.58
152 153 8.997621 TTTGTCTAGATAAGTGTGATGTTACC 57.002 34.615 1.97 0.00 0.00 2.85
153 154 7.712204 TGTCTAGATAAGTGTGATGTTACCA 57.288 36.000 0.00 0.00 0.00 3.25
154 155 7.544622 TGTCTAGATAAGTGTGATGTTACCAC 58.455 38.462 0.00 0.00 35.23 4.16
155 156 6.979238 GTCTAGATAAGTGTGATGTTACCACC 59.021 42.308 0.00 0.00 33.80 4.61
156 157 6.895756 TCTAGATAAGTGTGATGTTACCACCT 59.104 38.462 0.00 0.00 33.80 4.00
157 158 6.374417 AGATAAGTGTGATGTTACCACCTT 57.626 37.500 0.00 0.00 33.80 3.50
158 159 6.407202 AGATAAGTGTGATGTTACCACCTTC 58.593 40.000 0.00 0.00 33.80 3.46
159 160 3.418684 AGTGTGATGTTACCACCTTCC 57.581 47.619 0.00 0.00 33.80 3.46
160 161 2.039879 AGTGTGATGTTACCACCTTCCC 59.960 50.000 0.00 0.00 33.80 3.97
161 162 2.058705 TGTGATGTTACCACCTTCCCA 58.941 47.619 0.00 0.00 33.80 4.37
162 163 2.647299 TGTGATGTTACCACCTTCCCAT 59.353 45.455 0.00 0.00 33.80 4.00
163 164 3.279434 GTGATGTTACCACCTTCCCATC 58.721 50.000 0.00 0.00 0.00 3.51
164 165 3.054361 GTGATGTTACCACCTTCCCATCT 60.054 47.826 0.00 0.00 32.07 2.90
165 166 4.163458 GTGATGTTACCACCTTCCCATCTA 59.837 45.833 0.00 0.00 32.07 1.98
166 167 4.975147 TGATGTTACCACCTTCCCATCTAT 59.025 41.667 0.00 0.00 32.07 1.98
167 168 5.431731 TGATGTTACCACCTTCCCATCTATT 59.568 40.000 0.00 0.00 32.07 1.73
168 169 5.789574 TGTTACCACCTTCCCATCTATTT 57.210 39.130 0.00 0.00 0.00 1.40
169 170 6.147437 TGTTACCACCTTCCCATCTATTTT 57.853 37.500 0.00 0.00 0.00 1.82
170 171 5.949354 TGTTACCACCTTCCCATCTATTTTG 59.051 40.000 0.00 0.00 0.00 2.44
171 172 3.365472 ACCACCTTCCCATCTATTTTGC 58.635 45.455 0.00 0.00 0.00 3.68
172 173 2.358898 CCACCTTCCCATCTATTTTGCG 59.641 50.000 0.00 0.00 0.00 4.85
173 174 2.024414 ACCTTCCCATCTATTTTGCGC 58.976 47.619 0.00 0.00 0.00 6.09
174 175 2.301346 CCTTCCCATCTATTTTGCGCT 58.699 47.619 9.73 0.00 0.00 5.92
175 176 2.291741 CCTTCCCATCTATTTTGCGCTC 59.708 50.000 9.73 0.00 0.00 5.03
176 177 3.209410 CTTCCCATCTATTTTGCGCTCT 58.791 45.455 9.73 0.00 0.00 4.09
177 178 2.564771 TCCCATCTATTTTGCGCTCTG 58.435 47.619 9.73 0.00 0.00 3.35
178 179 2.092968 TCCCATCTATTTTGCGCTCTGT 60.093 45.455 9.73 0.00 0.00 3.41
179 180 2.684881 CCCATCTATTTTGCGCTCTGTT 59.315 45.455 9.73 0.00 0.00 3.16
180 181 3.876914 CCCATCTATTTTGCGCTCTGTTA 59.123 43.478 9.73 0.00 0.00 2.41
181 182 4.260784 CCCATCTATTTTGCGCTCTGTTAC 60.261 45.833 9.73 0.00 0.00 2.50
182 183 4.332543 CCATCTATTTTGCGCTCTGTTACA 59.667 41.667 9.73 0.00 0.00 2.41
183 184 5.496387 CATCTATTTTGCGCTCTGTTACAG 58.504 41.667 9.73 5.94 0.00 2.74
184 185 4.566004 TCTATTTTGCGCTCTGTTACAGT 58.434 39.130 12.41 0.00 32.61 3.55
185 186 5.716094 TCTATTTTGCGCTCTGTTACAGTA 58.284 37.500 12.41 0.00 32.61 2.74
186 187 6.160684 TCTATTTTGCGCTCTGTTACAGTAA 58.839 36.000 12.41 0.00 32.61 2.24
187 188 4.461992 TTTTGCGCTCTGTTACAGTAAC 57.538 40.909 15.58 15.58 39.11 2.50
188 189 2.804697 TGCGCTCTGTTACAGTAACA 57.195 45.000 22.27 22.27 45.66 2.41
189 190 3.313012 TGCGCTCTGTTACAGTAACAT 57.687 42.857 23.56 0.00 46.51 2.71
190 191 4.443913 TGCGCTCTGTTACAGTAACATA 57.556 40.909 23.56 16.64 46.51 2.29
191 192 5.006153 TGCGCTCTGTTACAGTAACATAT 57.994 39.130 23.56 0.00 46.51 1.78
192 193 5.416083 TGCGCTCTGTTACAGTAACATATT 58.584 37.500 23.56 0.00 46.51 1.28
193 194 6.566141 TGCGCTCTGTTACAGTAACATATTA 58.434 36.000 23.56 10.80 46.51 0.98
194 195 7.207383 TGCGCTCTGTTACAGTAACATATTAT 58.793 34.615 23.56 0.00 46.51 1.28
195 196 7.169140 TGCGCTCTGTTACAGTAACATATTATG 59.831 37.037 23.56 12.68 46.51 1.90
196 197 7.169308 GCGCTCTGTTACAGTAACATATTATGT 59.831 37.037 23.56 3.40 46.51 2.29
219 220 8.645814 TGTTACTCTAAACAACTATCTCCTCA 57.354 34.615 0.00 0.00 36.45 3.86
220 221 9.256228 TGTTACTCTAAACAACTATCTCCTCAT 57.744 33.333 0.00 0.00 36.45 2.90
232 233 9.915629 CAACTATCTCCTCATTAACTACATACC 57.084 37.037 0.00 0.00 0.00 2.73
233 234 9.656323 AACTATCTCCTCATTAACTACATACCA 57.344 33.333 0.00 0.00 0.00 3.25
234 235 9.830186 ACTATCTCCTCATTAACTACATACCAT 57.170 33.333 0.00 0.00 0.00 3.55
260 261 4.775664 AGCAAAATTTTCTTGAAATGCGC 58.224 34.783 0.00 0.00 37.98 6.09
261 262 4.512571 AGCAAAATTTTCTTGAAATGCGCT 59.487 33.333 9.73 0.01 37.98 5.92
262 263 5.695816 AGCAAAATTTTCTTGAAATGCGCTA 59.304 32.000 9.73 0.00 37.98 4.26
263 264 6.369615 AGCAAAATTTTCTTGAAATGCGCTAT 59.630 30.769 9.73 0.00 37.98 2.97
264 265 6.463576 GCAAAATTTTCTTGAAATGCGCTATG 59.536 34.615 9.73 0.00 37.98 2.23
265 266 7.512297 CAAAATTTTCTTGAAATGCGCTATGT 58.488 30.769 9.73 0.00 37.98 2.29
266 267 7.656707 AAATTTTCTTGAAATGCGCTATGTT 57.343 28.000 9.73 0.00 37.98 2.71
267 268 8.755696 AAATTTTCTTGAAATGCGCTATGTTA 57.244 26.923 9.73 0.00 37.98 2.41
268 269 7.740519 ATTTTCTTGAAATGCGCTATGTTAC 57.259 32.000 9.73 0.00 36.61 2.50
269 270 6.494893 TTTCTTGAAATGCGCTATGTTACT 57.505 33.333 9.73 0.00 0.00 2.24
270 271 7.603963 TTTCTTGAAATGCGCTATGTTACTA 57.396 32.000 9.73 0.00 0.00 1.82
271 272 7.786178 TTCTTGAAATGCGCTATGTTACTAT 57.214 32.000 9.73 0.00 0.00 2.12
272 273 7.408132 TCTTGAAATGCGCTATGTTACTATC 57.592 36.000 9.73 0.00 0.00 2.08
273 274 7.210174 TCTTGAAATGCGCTATGTTACTATCT 58.790 34.615 9.73 0.00 0.00 1.98
274 275 8.357402 TCTTGAAATGCGCTATGTTACTATCTA 58.643 33.333 9.73 0.00 0.00 1.98
275 276 8.880878 TTGAAATGCGCTATGTTACTATCTAA 57.119 30.769 9.73 0.00 0.00 2.10
276 277 8.520835 TGAAATGCGCTATGTTACTATCTAAG 57.479 34.615 9.73 0.00 0.00 2.18
277 278 8.141909 TGAAATGCGCTATGTTACTATCTAAGT 58.858 33.333 9.73 0.00 42.62 2.24
278 279 8.888579 AAATGCGCTATGTTACTATCTAAGTT 57.111 30.769 9.73 0.00 39.80 2.66
279 280 9.976511 AAATGCGCTATGTTACTATCTAAGTTA 57.023 29.630 9.73 0.00 39.80 2.24
282 283 9.622004 TGCGCTATGTTACTATCTAAGTTATTC 57.378 33.333 9.73 0.00 39.80 1.75
283 284 9.074443 GCGCTATGTTACTATCTAAGTTATTCC 57.926 37.037 0.00 0.00 39.80 3.01
284 285 9.570488 CGCTATGTTACTATCTAAGTTATTCCC 57.430 37.037 0.00 0.00 39.80 3.97
293 294 9.884814 ACTATCTAAGTTATTCCCACTATGACT 57.115 33.333 0.00 0.00 33.35 3.41
296 297 8.179509 TCTAAGTTATTCCCACTATGACTAGC 57.820 38.462 0.00 0.00 0.00 3.42
297 298 5.810080 AGTTATTCCCACTATGACTAGCC 57.190 43.478 0.00 0.00 0.00 3.93
298 299 5.216622 AGTTATTCCCACTATGACTAGCCA 58.783 41.667 0.00 0.00 0.00 4.75
299 300 5.305644 AGTTATTCCCACTATGACTAGCCAG 59.694 44.000 0.00 0.00 0.00 4.85
300 301 2.848678 TCCCACTATGACTAGCCAGT 57.151 50.000 0.00 0.00 37.87 4.00
301 302 2.388735 TCCCACTATGACTAGCCAGTG 58.611 52.381 0.00 0.00 38.48 3.66
320 321 4.261888 CGAAGCCACGTACAAGCT 57.738 55.556 0.00 0.00 38.88 3.74
321 322 1.781555 CGAAGCCACGTACAAGCTG 59.218 57.895 2.37 0.00 36.84 4.24
322 323 1.626654 CGAAGCCACGTACAAGCTGG 61.627 60.000 2.37 0.00 36.84 4.85
323 324 1.298859 GAAGCCACGTACAAGCTGGG 61.299 60.000 2.37 0.00 36.84 4.45
324 325 2.032071 GCCACGTACAAGCTGGGT 59.968 61.111 0.00 0.00 0.00 4.51
325 326 1.189524 AGCCACGTACAAGCTGGGTA 61.190 55.000 0.00 0.00 33.97 3.69
326 327 0.739813 GCCACGTACAAGCTGGGTAG 60.740 60.000 0.00 0.00 0.00 3.18
327 328 0.606604 CCACGTACAAGCTGGGTAGT 59.393 55.000 0.00 0.00 0.00 2.73
328 329 1.403780 CCACGTACAAGCTGGGTAGTC 60.404 57.143 0.00 0.00 0.00 2.59
329 330 1.271379 CACGTACAAGCTGGGTAGTCA 59.729 52.381 0.00 0.00 0.00 3.41
330 331 1.965643 ACGTACAAGCTGGGTAGTCAA 59.034 47.619 0.00 0.00 0.00 3.18
331 332 2.565834 ACGTACAAGCTGGGTAGTCAAT 59.434 45.455 0.00 0.00 0.00 2.57
332 333 3.007614 ACGTACAAGCTGGGTAGTCAATT 59.992 43.478 0.00 0.00 0.00 2.32
333 334 3.370978 CGTACAAGCTGGGTAGTCAATTG 59.629 47.826 0.00 0.00 0.00 2.32
334 335 3.788227 ACAAGCTGGGTAGTCAATTGA 57.212 42.857 3.38 3.38 0.00 2.57
335 336 3.412386 ACAAGCTGGGTAGTCAATTGAC 58.588 45.455 27.69 27.69 45.08 3.18
350 351 6.801575 GTCAATTGACTACCCAACTTTTTGA 58.198 36.000 27.66 0.00 41.65 2.69
351 352 7.433680 GTCAATTGACTACCCAACTTTTTGAT 58.566 34.615 27.66 0.00 41.65 2.57
352 353 8.573035 GTCAATTGACTACCCAACTTTTTGATA 58.427 33.333 27.66 0.00 41.65 2.15
353 354 9.137459 TCAATTGACTACCCAACTTTTTGATAA 57.863 29.630 3.38 0.00 34.24 1.75
354 355 9.757227 CAATTGACTACCCAACTTTTTGATAAA 57.243 29.630 0.00 0.00 34.24 1.40
356 357 9.758651 ATTGACTACCCAACTTTTTGATAAAAC 57.241 29.630 0.00 0.00 34.24 2.43
357 358 8.528044 TGACTACCCAACTTTTTGATAAAACT 57.472 30.769 0.00 0.00 34.24 2.66
358 359 9.629878 TGACTACCCAACTTTTTGATAAAACTA 57.370 29.630 0.00 0.00 34.24 2.24
360 361 8.573885 ACTACCCAACTTTTTGATAAAACTAGC 58.426 33.333 0.00 0.00 34.24 3.42
361 362 7.354751 ACCCAACTTTTTGATAAAACTAGCA 57.645 32.000 0.00 0.00 34.24 3.49
362 363 7.962441 ACCCAACTTTTTGATAAAACTAGCAT 58.038 30.769 0.00 0.00 34.24 3.79
363 364 9.084533 ACCCAACTTTTTGATAAAACTAGCATA 57.915 29.630 0.00 0.00 34.24 3.14
391 392 9.715121 AGATGCAGAAATATTGAAACAAATTGT 57.285 25.926 0.00 0.00 0.00 2.71
429 430 8.791355 ATTTGACTACACCGTTTTAAATTGAC 57.209 30.769 0.00 0.00 0.00 3.18
430 431 7.556733 TTGACTACACCGTTTTAAATTGACT 57.443 32.000 0.00 0.00 0.00 3.41
431 432 8.659925 TTGACTACACCGTTTTAAATTGACTA 57.340 30.769 0.00 0.00 0.00 2.59
432 433 8.075593 TGACTACACCGTTTTAAATTGACTAC 57.924 34.615 0.00 0.00 0.00 2.73
433 434 7.710044 TGACTACACCGTTTTAAATTGACTACA 59.290 33.333 0.00 0.00 0.00 2.74
434 435 7.854534 ACTACACCGTTTTAAATTGACTACAC 58.145 34.615 0.00 0.00 0.00 2.90
435 436 6.680874 ACACCGTTTTAAATTGACTACACA 57.319 33.333 0.00 0.00 0.00 3.72
436 437 7.086230 ACACCGTTTTAAATTGACTACACAA 57.914 32.000 0.00 0.00 0.00 3.33
437 438 7.190871 ACACCGTTTTAAATTGACTACACAAG 58.809 34.615 0.00 0.00 33.22 3.16
438 439 7.066043 ACACCGTTTTAAATTGACTACACAAGA 59.934 33.333 0.00 0.00 33.22 3.02
439 440 7.375017 CACCGTTTTAAATTGACTACACAAGAC 59.625 37.037 0.00 0.00 33.22 3.01
440 441 7.066043 ACCGTTTTAAATTGACTACACAAGACA 59.934 33.333 0.00 0.00 33.22 3.41
441 442 7.911205 CCGTTTTAAATTGACTACACAAGACAA 59.089 33.333 0.00 0.00 42.63 3.18
442 443 8.730427 CGTTTTAAATTGACTACACAAGACAAC 58.270 33.333 0.00 0.00 41.55 3.32
443 444 9.562583 GTTTTAAATTGACTACACAAGACAACA 57.437 29.630 0.00 0.00 41.55 3.33
447 448 8.856490 AAATTGACTACACAAGACAACATTTC 57.144 30.769 0.00 0.00 41.55 2.17
448 449 7.807977 ATTGACTACACAAGACAACATTTCT 57.192 32.000 0.00 0.00 41.55 2.52
449 450 6.603237 TGACTACACAAGACAACATTTCTG 57.397 37.500 0.00 0.00 0.00 3.02
450 451 5.527214 TGACTACACAAGACAACATTTCTGG 59.473 40.000 0.00 0.00 0.00 3.86
451 452 3.715628 ACACAAGACAACATTTCTGGC 57.284 42.857 0.00 0.00 0.00 4.85
452 453 3.023119 ACACAAGACAACATTTCTGGCA 58.977 40.909 0.00 0.00 0.00 4.92
453 454 3.181487 ACACAAGACAACATTTCTGGCAC 60.181 43.478 0.00 0.00 0.00 5.01
454 455 2.362077 ACAAGACAACATTTCTGGCACC 59.638 45.455 0.00 0.00 0.00 5.01
455 456 1.238439 AGACAACATTTCTGGCACCG 58.762 50.000 0.00 0.00 0.00 4.94
456 457 0.387239 GACAACATTTCTGGCACCGC 60.387 55.000 0.00 0.00 0.00 5.68
467 468 2.342279 GCACCGCCACTGTGACTA 59.658 61.111 9.86 0.00 35.74 2.59
468 469 1.738099 GCACCGCCACTGTGACTAG 60.738 63.158 9.86 0.00 35.74 2.57
469 470 1.738099 CACCGCCACTGTGACTAGC 60.738 63.158 9.86 2.96 35.74 3.42
470 471 2.125512 CCGCCACTGTGACTAGCC 60.126 66.667 9.86 0.00 0.00 3.93
471 472 2.650116 CCGCCACTGTGACTAGCCT 61.650 63.158 9.86 0.00 0.00 4.58
472 473 1.153745 CGCCACTGTGACTAGCCTC 60.154 63.158 9.86 0.00 0.00 4.70
473 474 1.877576 CGCCACTGTGACTAGCCTCA 61.878 60.000 9.86 0.00 0.00 3.86
474 475 0.108424 GCCACTGTGACTAGCCTCAG 60.108 60.000 9.86 6.58 34.76 3.35
475 476 0.534412 CCACTGTGACTAGCCTCAGG 59.466 60.000 9.86 0.00 33.37 3.86
486 487 2.216148 GCCTCAGGCTGGTCATAGT 58.784 57.895 15.73 0.00 46.69 2.12
487 488 0.179062 GCCTCAGGCTGGTCATAGTG 60.179 60.000 15.73 0.12 46.69 2.74
488 489 0.467384 CCTCAGGCTGGTCATAGTGG 59.533 60.000 15.73 1.12 0.00 4.00
489 490 0.467384 CTCAGGCTGGTCATAGTGGG 59.533 60.000 15.73 0.00 0.00 4.61
490 491 0.042581 TCAGGCTGGTCATAGTGGGA 59.957 55.000 15.73 0.00 0.00 4.37
491 492 0.911769 CAGGCTGGTCATAGTGGGAA 59.088 55.000 6.61 0.00 0.00 3.97
492 493 1.134280 CAGGCTGGTCATAGTGGGAAG 60.134 57.143 6.61 0.00 0.00 3.46
493 494 0.912486 GGCTGGTCATAGTGGGAAGT 59.088 55.000 0.00 0.00 0.00 3.01
494 495 2.116238 GGCTGGTCATAGTGGGAAGTA 58.884 52.381 0.00 0.00 0.00 2.24
495 496 2.504175 GGCTGGTCATAGTGGGAAGTAA 59.496 50.000 0.00 0.00 0.00 2.24
496 497 3.532542 GCTGGTCATAGTGGGAAGTAAC 58.467 50.000 0.00 0.00 0.00 2.50
497 498 3.197983 GCTGGTCATAGTGGGAAGTAACT 59.802 47.826 0.00 0.00 0.00 2.24
498 499 4.323562 GCTGGTCATAGTGGGAAGTAACTT 60.324 45.833 0.00 0.00 0.00 2.66
499 500 5.105064 GCTGGTCATAGTGGGAAGTAACTTA 60.105 44.000 0.00 0.00 0.00 2.24
500 501 6.540438 TGGTCATAGTGGGAAGTAACTTAG 57.460 41.667 0.00 0.00 0.00 2.18
501 502 6.258354 TGGTCATAGTGGGAAGTAACTTAGA 58.742 40.000 0.00 0.00 0.00 2.10
502 503 6.154021 TGGTCATAGTGGGAAGTAACTTAGAC 59.846 42.308 0.00 0.00 32.58 2.59
503 504 6.380560 GGTCATAGTGGGAAGTAACTTAGACT 59.619 42.308 0.00 0.00 33.27 3.24
504 505 7.559170 GGTCATAGTGGGAAGTAACTTAGACTA 59.441 40.741 0.00 0.00 33.27 2.59
505 506 8.623030 GTCATAGTGGGAAGTAACTTAGACTAG 58.377 40.741 0.00 0.00 31.58 2.57
506 507 8.334734 TCATAGTGGGAAGTAACTTAGACTAGT 58.665 37.037 0.00 0.00 0.00 2.57
507 508 6.837471 AGTGGGAAGTAACTTAGACTAGTG 57.163 41.667 0.00 0.00 0.00 2.74
508 509 6.313324 AGTGGGAAGTAACTTAGACTAGTGT 58.687 40.000 0.00 0.00 0.00 3.55
509 510 6.781507 AGTGGGAAGTAACTTAGACTAGTGTT 59.218 38.462 0.00 0.26 0.00 3.32
510 511 7.946776 AGTGGGAAGTAACTTAGACTAGTGTTA 59.053 37.037 0.00 0.00 0.00 2.41
511 512 8.747471 GTGGGAAGTAACTTAGACTAGTGTTAT 58.253 37.037 0.00 0.00 0.00 1.89
512 513 9.979897 TGGGAAGTAACTTAGACTAGTGTTATA 57.020 33.333 0.00 0.00 0.00 0.98
520 521 9.751542 AACTTAGACTAGTGTTATATGCATGAC 57.248 33.333 10.16 6.11 0.00 3.06
521 522 8.914011 ACTTAGACTAGTGTTATATGCATGACA 58.086 33.333 10.16 8.77 0.00 3.58
522 523 9.186323 CTTAGACTAGTGTTATATGCATGACAC 57.814 37.037 23.89 23.89 46.71 3.67
531 532 9.186323 GTGTTATATGCATGACACTAGTCTAAG 57.814 37.037 23.97 0.00 44.31 2.18
532 533 8.914011 TGTTATATGCATGACACTAGTCTAAGT 58.086 33.333 10.16 0.00 45.20 2.24
533 534 9.751542 GTTATATGCATGACACTAGTCTAAGTT 57.248 33.333 10.16 0.00 45.20 2.66
536 537 6.835819 TGCATGACACTAGTCTAAGTTACT 57.164 37.500 0.00 0.00 45.20 2.24
537 538 7.933215 TGCATGACACTAGTCTAAGTTACTA 57.067 36.000 0.00 0.00 45.20 1.82
538 539 8.521170 TGCATGACACTAGTCTAAGTTACTAT 57.479 34.615 0.00 0.00 45.20 2.12
539 540 8.622157 TGCATGACACTAGTCTAAGTTACTATC 58.378 37.037 0.00 0.00 45.20 2.08
540 541 8.842280 GCATGACACTAGTCTAAGTTACTATCT 58.158 37.037 0.00 0.00 45.20 1.98
543 544 9.955102 TGACACTAGTCTAAGTTACTATCTTCA 57.045 33.333 0.00 0.00 45.20 3.02
570 571 8.792830 AATGCAAAGTAACATGATAGTAGTGT 57.207 30.769 0.00 0.00 0.00 3.55
571 572 7.827819 TGCAAAGTAACATGATAGTAGTGTC 57.172 36.000 0.00 0.00 0.00 3.67
572 573 7.382898 TGCAAAGTAACATGATAGTAGTGTCA 58.617 34.615 0.00 0.00 0.00 3.58
573 574 8.040727 TGCAAAGTAACATGATAGTAGTGTCAT 58.959 33.333 0.00 4.08 35.01 3.06
574 575 9.529325 GCAAAGTAACATGATAGTAGTGTCATA 57.471 33.333 9.25 0.00 33.03 2.15
579 580 9.847706 GTAACATGATAGTAGTGTCATAGATGG 57.152 37.037 9.25 0.82 33.03 3.51
580 581 6.929625 ACATGATAGTAGTGTCATAGATGGC 58.070 40.000 9.25 0.00 33.03 4.40
581 582 6.723515 ACATGATAGTAGTGTCATAGATGGCT 59.276 38.462 9.25 0.00 33.03 4.75
582 583 7.234371 ACATGATAGTAGTGTCATAGATGGCTT 59.766 37.037 9.25 0.00 33.03 4.35
583 584 7.603180 TGATAGTAGTGTCATAGATGGCTTT 57.397 36.000 0.00 0.00 32.56 3.51
584 585 8.706322 TGATAGTAGTGTCATAGATGGCTTTA 57.294 34.615 0.00 0.00 32.56 1.85
585 586 9.314133 TGATAGTAGTGTCATAGATGGCTTTAT 57.686 33.333 0.00 0.00 32.56 1.40
602 603 9.853177 ATGGCTTTATTTATTAGCTTGTAGACT 57.147 29.630 0.00 0.00 35.30 3.24
603 604 9.326413 TGGCTTTATTTATTAGCTTGTAGACTC 57.674 33.333 0.00 0.00 35.30 3.36
604 605 9.326413 GGCTTTATTTATTAGCTTGTAGACTCA 57.674 33.333 0.00 0.00 35.30 3.41
611 612 9.587772 TTTATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
612 613 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
613 614 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
614 615 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
615 616 4.629200 GCTTGTAGACTCATCTTGTCTTGG 59.371 45.833 1.67 0.00 41.45 3.61
616 617 5.567623 GCTTGTAGACTCATCTTGTCTTGGA 60.568 44.000 1.67 0.00 41.45 3.53
617 618 6.419484 TTGTAGACTCATCTTGTCTTGGAA 57.581 37.500 1.67 0.00 41.45 3.53
618 619 6.419484 TGTAGACTCATCTTGTCTTGGAAA 57.581 37.500 1.67 0.00 41.45 3.13
619 620 6.459066 TGTAGACTCATCTTGTCTTGGAAAG 58.541 40.000 1.67 0.00 41.45 2.62
620 621 5.559148 AGACTCATCTTGTCTTGGAAAGT 57.441 39.130 0.00 0.00 46.34 2.66
621 622 5.303971 AGACTCATCTTGTCTTGGAAAGTG 58.696 41.667 0.00 0.00 46.34 3.16
622 623 3.817647 ACTCATCTTGTCTTGGAAAGTGC 59.182 43.478 0.00 0.00 46.34 4.40
623 624 4.070716 CTCATCTTGTCTTGGAAAGTGCT 58.929 43.478 0.00 0.00 46.34 4.40
624 625 5.221722 ACTCATCTTGTCTTGGAAAGTGCTA 60.222 40.000 0.00 0.00 46.34 3.49
625 626 5.809001 TCATCTTGTCTTGGAAAGTGCTAT 58.191 37.500 0.00 0.00 46.34 2.97
626 627 5.645067 TCATCTTGTCTTGGAAAGTGCTATG 59.355 40.000 0.00 0.00 46.34 2.23
627 628 4.973168 TCTTGTCTTGGAAAGTGCTATGT 58.027 39.130 0.00 0.00 46.34 2.29
628 629 5.376625 TCTTGTCTTGGAAAGTGCTATGTT 58.623 37.500 0.00 0.00 46.34 2.71
629 630 6.530120 TCTTGTCTTGGAAAGTGCTATGTTA 58.470 36.000 0.00 0.00 46.34 2.41
630 631 6.426937 TCTTGTCTTGGAAAGTGCTATGTTAC 59.573 38.462 0.00 0.00 46.34 2.50
631 632 5.616270 TGTCTTGGAAAGTGCTATGTTACA 58.384 37.500 0.00 0.00 46.34 2.41
632 633 5.468746 TGTCTTGGAAAGTGCTATGTTACAC 59.531 40.000 0.00 0.00 46.34 2.90
634 635 6.872020 GTCTTGGAAAGTGCTATGTTACACTA 59.128 38.462 0.00 0.00 46.17 2.74
635 636 7.386848 GTCTTGGAAAGTGCTATGTTACACTAA 59.613 37.037 0.00 0.00 46.17 2.24
636 637 7.386848 TCTTGGAAAGTGCTATGTTACACTAAC 59.613 37.037 0.00 0.00 46.17 2.34
637 638 7.172532 CTTGGAAAGTGCTATGTTACACTAACA 59.827 37.037 0.00 0.00 46.17 2.41
668 669 8.330466 TGTTACCACCTCACATTAAATACTTG 57.670 34.615 0.00 0.00 0.00 3.16
669 670 5.897377 ACCACCTCACATTAAATACTTGC 57.103 39.130 0.00 0.00 0.00 4.01
670 671 4.705023 ACCACCTCACATTAAATACTTGCC 59.295 41.667 0.00 0.00 0.00 4.52
671 672 4.704540 CCACCTCACATTAAATACTTGCCA 59.295 41.667 0.00 0.00 0.00 4.92
672 673 5.393027 CCACCTCACATTAAATACTTGCCAC 60.393 44.000 0.00 0.00 0.00 5.01
673 674 5.182950 CACCTCACATTAAATACTTGCCACA 59.817 40.000 0.00 0.00 0.00 4.17
674 675 5.951747 ACCTCACATTAAATACTTGCCACAT 59.048 36.000 0.00 0.00 0.00 3.21
675 676 7.066887 CACCTCACATTAAATACTTGCCACATA 59.933 37.037 0.00 0.00 0.00 2.29
676 677 7.613801 ACCTCACATTAAATACTTGCCACATAA 59.386 33.333 0.00 0.00 0.00 1.90
677 678 8.465999 CCTCACATTAAATACTTGCCACATAAA 58.534 33.333 0.00 0.00 0.00 1.40
678 679 9.289303 CTCACATTAAATACTTGCCACATAAAC 57.711 33.333 0.00 0.00 0.00 2.01
679 680 8.797438 TCACATTAAATACTTGCCACATAAACA 58.203 29.630 0.00 0.00 0.00 2.83
680 681 9.416794 CACATTAAATACTTGCCACATAAACAA 57.583 29.630 0.00 0.00 0.00 2.83
681 682 9.988815 ACATTAAATACTTGCCACATAAACAAA 57.011 25.926 0.00 0.00 0.00 2.83
688 689 9.777297 ATACTTGCCACATAAACAAAAATTTCT 57.223 25.926 0.00 0.00 0.00 2.52
689 690 8.504812 ACTTGCCACATAAACAAAAATTTCTT 57.495 26.923 0.00 0.00 0.00 2.52
690 691 8.397148 ACTTGCCACATAAACAAAAATTTCTTG 58.603 29.630 9.92 9.92 0.00 3.02
691 692 8.498054 TTGCCACATAAACAAAAATTTCTTGA 57.502 26.923 15.45 0.54 0.00 3.02
692 693 8.498054 TGCCACATAAACAAAAATTTCTTGAA 57.502 26.923 15.45 5.65 0.00 2.69
693 694 8.610896 TGCCACATAAACAAAAATTTCTTGAAG 58.389 29.630 15.45 0.00 0.00 3.02
694 695 8.611757 GCCACATAAACAAAAATTTCTTGAAGT 58.388 29.630 15.45 7.11 0.00 3.01
698 699 9.777843 CATAAACAAAAATTTCTTGAAGTACGC 57.222 29.630 15.45 0.00 0.00 4.42
699 700 9.744468 ATAAACAAAAATTTCTTGAAGTACGCT 57.256 25.926 15.45 0.00 0.00 5.07
701 702 9.744468 AAACAAAAATTTCTTGAAGTACGCTAT 57.256 25.926 15.45 0.00 0.00 2.97
702 703 8.728088 ACAAAAATTTCTTGAAGTACGCTATG 57.272 30.769 15.45 0.00 0.00 2.23
703 704 8.349983 ACAAAAATTTCTTGAAGTACGCTATGT 58.650 29.630 15.45 0.00 0.00 2.29
704 705 9.180678 CAAAAATTTCTTGAAGTACGCTATGTT 57.819 29.630 0.00 0.00 0.00 2.71
706 707 9.821662 AAAATTTCTTGAAGTACGCTATGTTAC 57.178 29.630 0.00 0.00 0.00 2.50
707 708 8.773404 AATTTCTTGAAGTACGCTATGTTACT 57.227 30.769 0.00 0.00 0.00 2.24
708 709 7.576750 TTTCTTGAAGTACGCTATGTTACTG 57.423 36.000 0.00 0.00 0.00 2.74
709 710 5.647589 TCTTGAAGTACGCTATGTTACTGG 58.352 41.667 0.00 0.00 0.00 4.00
710 711 3.777478 TGAAGTACGCTATGTTACTGGC 58.223 45.455 0.00 0.00 0.00 4.85
711 712 3.446161 TGAAGTACGCTATGTTACTGGCT 59.554 43.478 0.00 0.00 0.00 4.75
712 713 4.641541 TGAAGTACGCTATGTTACTGGCTA 59.358 41.667 0.00 0.00 0.00 3.93
713 714 5.125900 TGAAGTACGCTATGTTACTGGCTAA 59.874 40.000 0.00 0.00 0.00 3.09
714 715 5.184340 AGTACGCTATGTTACTGGCTAAG 57.816 43.478 0.00 0.00 0.00 2.18
715 716 4.643784 AGTACGCTATGTTACTGGCTAAGT 59.356 41.667 0.00 0.00 43.40 2.24
716 717 4.467198 ACGCTATGTTACTGGCTAAGTT 57.533 40.909 0.00 0.00 40.56 2.66
717 718 5.587388 ACGCTATGTTACTGGCTAAGTTA 57.413 39.130 0.00 0.00 40.56 2.24
718 719 5.346522 ACGCTATGTTACTGGCTAAGTTAC 58.653 41.667 0.00 0.97 40.56 2.50
719 720 5.126707 ACGCTATGTTACTGGCTAAGTTACT 59.873 40.000 9.51 0.00 38.87 2.24
720 721 5.686397 CGCTATGTTACTGGCTAAGTTACTC 59.314 44.000 9.51 0.00 38.87 2.59
721 722 5.984323 GCTATGTTACTGGCTAAGTTACTCC 59.016 44.000 9.51 0.00 38.87 3.85
722 723 4.813750 TGTTACTGGCTAAGTTACTCCC 57.186 45.455 9.51 0.00 38.87 4.30
723 724 4.161876 TGTTACTGGCTAAGTTACTCCCA 58.838 43.478 9.51 0.00 38.87 4.37
724 725 4.020839 TGTTACTGGCTAAGTTACTCCCAC 60.021 45.833 9.51 0.00 38.87 4.61
725 726 2.903926 ACTGGCTAAGTTACTCCCACT 58.096 47.619 0.00 0.00 34.57 4.00
726 727 4.057063 ACTGGCTAAGTTACTCCCACTA 57.943 45.455 0.00 0.00 34.57 2.74
727 728 4.621769 ACTGGCTAAGTTACTCCCACTAT 58.378 43.478 0.00 0.00 34.57 2.12
728 729 4.406003 ACTGGCTAAGTTACTCCCACTATG 59.594 45.833 0.00 0.00 34.57 2.23
729 730 4.616553 TGGCTAAGTTACTCCCACTATGA 58.383 43.478 0.00 0.00 0.00 2.15
730 731 4.404715 TGGCTAAGTTACTCCCACTATGAC 59.595 45.833 0.00 0.00 0.00 3.06
731 732 4.650131 GGCTAAGTTACTCCCACTATGACT 59.350 45.833 0.00 0.00 0.00 3.41
732 733 5.832060 GGCTAAGTTACTCCCACTATGACTA 59.168 44.000 0.00 0.00 0.00 2.59
733 734 6.016108 GGCTAAGTTACTCCCACTATGACTAG 60.016 46.154 0.00 0.00 0.00 2.57
734 735 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
735 736 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
736 737 4.079096 AGTTACTCCCACTATGACTAGCCT 60.079 45.833 0.00 0.00 0.00 4.58
737 738 2.672098 ACTCCCACTATGACTAGCCTG 58.328 52.381 0.00 0.00 0.00 4.85
738 739 2.245028 ACTCCCACTATGACTAGCCTGA 59.755 50.000 0.00 0.00 0.00 3.86
739 740 2.625790 CTCCCACTATGACTAGCCTGAC 59.374 54.545 0.00 0.00 0.00 3.51
740 741 1.689273 CCCACTATGACTAGCCTGACC 59.311 57.143 0.00 0.00 0.00 4.02
741 742 1.689273 CCACTATGACTAGCCTGACCC 59.311 57.143 0.00 0.00 0.00 4.46
742 743 1.689273 CACTATGACTAGCCTGACCCC 59.311 57.143 0.00 0.00 0.00 4.95
743 744 1.343069 CTATGACTAGCCTGACCCCC 58.657 60.000 0.00 0.00 0.00 5.40
803 805 1.080498 AGACACCTCCCAGGGACATTA 59.920 52.381 3.01 0.00 40.58 1.90
847 849 0.800012 GGACGCAAAATTCCACGCTA 59.200 50.000 0.00 0.00 0.00 4.26
986 1000 3.822192 CCACGACGCCTCGATCCA 61.822 66.667 12.14 0.00 43.06 3.41
992 1006 2.107141 CGCCTCGATCCACCCTTC 59.893 66.667 0.00 0.00 0.00 3.46
1289 1305 2.977580 TCTCTCTATAGCTCCCCGTACA 59.022 50.000 0.00 0.00 0.00 2.90
1336 1353 7.051623 ACAAGGTGGATCGTAAAAATATAGCA 58.948 34.615 0.00 0.00 0.00 3.49
1423 1440 2.806244 GTGCACTGTCGAATAAGGTGTT 59.194 45.455 10.32 0.00 0.00 3.32
1463 1480 3.958798 CTCCCTCCGTCTGGAATTAACTA 59.041 47.826 0.00 0.00 45.87 2.24
1506 1547 0.320697 GGACGGAGGTTGTAGCTGTT 59.679 55.000 0.00 0.00 0.00 3.16
1792 2062 2.887152 AGTTCTGAGGTGTGCCAAATTC 59.113 45.455 0.00 0.00 37.19 2.17
2266 2537 6.919721 TGGAGAAAAAGCCACATATTACAAC 58.080 36.000 0.00 0.00 0.00 3.32
2300 2571 5.799978 TTAAGCCCCTTTATTCCCAACTA 57.200 39.130 0.00 0.00 0.00 2.24
2690 2961 7.497595 TCTCATGGTGGTTGTATACTTGTATC 58.502 38.462 4.17 0.00 0.00 2.24
2845 3116 8.632679 TCTGCTATTTGACACAAAGAAATTCTT 58.367 29.630 1.80 1.80 38.59 2.52
2971 3245 9.161684 GAAAACAATTCAAATGCTCAAAATGAC 57.838 29.630 0.00 0.00 0.00 3.06
3041 3315 6.111382 AGGTCATTGAACATCATCACTACAG 58.889 40.000 4.20 0.00 0.00 2.74
3051 3325 7.137490 ACATCATCACTACAGTCACATTTTG 57.863 36.000 0.00 0.00 0.00 2.44
3058 3332 4.821805 ACTACAGTCACATTTTGTCCTTGG 59.178 41.667 0.00 0.00 0.00 3.61
3253 3528 9.011095 CAGCATATGAAACATTATCTCTGGAAT 57.989 33.333 6.97 0.00 0.00 3.01
3282 3557 3.713826 TTTTTGGGACCTTCGATAGCT 57.286 42.857 0.00 0.00 0.00 3.32
3455 3730 1.429930 TGGACCAGTTTCAGCAGGTA 58.570 50.000 0.00 0.00 33.77 3.08
3513 3792 7.066887 CACTATTACATGAAAACCAGCATACCA 59.933 37.037 0.00 0.00 0.00 3.25
3550 3829 8.887717 GCAGAAATGAAGTTATAGTGTCAAGAT 58.112 33.333 0.00 0.00 0.00 2.40
3694 3979 9.745880 AATGTCTGGTTTGTACTATAAGATACG 57.254 33.333 0.00 0.00 0.00 3.06
3721 4006 4.155280 ACCGTATGACAAAGTTATTGCCAC 59.845 41.667 0.00 0.00 0.00 5.01
3738 4023 0.606604 CACGGTACACTTAGGGCACT 59.393 55.000 0.00 0.00 0.00 4.40
3791 4076 1.181098 GGGCAAATGTCTGCACTGGT 61.181 55.000 0.00 0.00 42.76 4.00
3810 4096 3.949754 TGGTACGGACGTTCATATCTTCT 59.050 43.478 1.57 0.00 0.00 2.85
3848 4134 3.062763 CACATCCTCTTACGATGATGGC 58.937 50.000 15.61 0.00 42.85 4.40
3860 4146 2.161855 GATGATGGCCAGTTTGTGTGA 58.838 47.619 13.05 0.00 0.00 3.58
4182 4472 2.125269 CCAGCCCCTAACCGTTCG 60.125 66.667 0.00 0.00 0.00 3.95
4290 4580 3.074412 CAAGAGCGGTGTCCAATTTACT 58.926 45.455 0.00 0.00 0.00 2.24
4304 4594 2.751166 TTTACTCAGCTGGCAGAGAC 57.249 50.000 20.86 0.00 34.32 3.36
4336 4626 4.305989 TGCAGGAATTAATTCGATTGCC 57.694 40.909 28.72 16.01 37.93 4.52
4418 4708 2.038952 TCACACTTGGACAGAGGGATTG 59.961 50.000 0.00 0.00 0.00 2.67
4494 4784 2.477375 GGTTTCGATTGTAACGTGCAGA 59.523 45.455 0.00 0.00 0.00 4.26
4593 4884 3.951680 TGATACTCATCTGGCGAAGTACA 59.048 43.478 0.00 0.00 31.93 2.90
4596 4887 1.920574 CTCATCTGGCGAAGTACAACG 59.079 52.381 0.00 1.21 0.00 4.10
4706 5000 3.119459 TGGTAGTCTAGCTTTCTCGCAAG 60.119 47.826 10.31 0.00 0.00 4.01
4872 8413 4.101856 TCTAGTTGCTAGGGTTTTAGGCT 58.898 43.478 0.00 0.00 35.03 4.58
4936 8480 4.770874 TGGCTTAGCGGTTCCGGC 62.771 66.667 13.16 7.42 0.00 6.13
4977 8521 1.226542 CATGTGCTCCTCCATGGCT 59.773 57.895 6.96 0.00 35.82 4.75
5176 8720 2.938798 ATTTGGGGGACGGGCTCA 60.939 61.111 0.00 0.00 0.00 4.26
5184 8728 3.537874 GACGGGCTCACGGGCTAT 61.538 66.667 0.00 0.00 40.65 2.97
5187 8731 2.201022 CGGGCTCACGGGCTATAGT 61.201 63.158 0.84 0.00 40.65 2.12
5205 8749 2.473760 TAGCAGCGACGAGGAGAGC 61.474 63.158 0.00 0.00 0.00 4.09
5296 8840 4.095400 AGGGATGGGCGGAGGAGT 62.095 66.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.689224 GTGATGCATGACACAGCAC 57.311 52.632 11.72 4.10 45.83 4.40
1 2 1.808343 GAAGTGATGCATGACACAGCA 59.192 47.619 18.76 6.84 45.92 4.41
2 3 1.808343 TGAAGTGATGCATGACACAGC 59.192 47.619 18.76 10.41 39.18 4.40
5 6 7.374228 CGTAATAAATGAAGTGATGCATGACAC 59.626 37.037 18.76 14.04 37.30 3.67
7 8 7.409697 ACGTAATAAATGAAGTGATGCATGAC 58.590 34.615 8.39 8.39 0.00 3.06
8 9 7.552458 ACGTAATAAATGAAGTGATGCATGA 57.448 32.000 2.46 0.00 0.00 3.07
9 10 7.697710 ACAACGTAATAAATGAAGTGATGCATG 59.302 33.333 2.46 0.00 0.00 4.06
10 11 7.761409 ACAACGTAATAAATGAAGTGATGCAT 58.239 30.769 0.00 0.00 0.00 3.96
11 12 7.139896 ACAACGTAATAAATGAAGTGATGCA 57.860 32.000 0.00 0.00 0.00 3.96
12 13 8.600625 TCTACAACGTAATAAATGAAGTGATGC 58.399 33.333 0.00 0.00 0.00 3.91
27 28 9.483916 TCAAGAAAAGATGAATCTACAACGTAA 57.516 29.630 0.00 0.00 35.76 3.18
28 29 9.653287 ATCAAGAAAAGATGAATCTACAACGTA 57.347 29.630 0.00 0.00 35.76 3.57
29 30 7.962964 TCAAGAAAAGATGAATCTACAACGT 57.037 32.000 0.00 0.00 35.76 3.99
36 37 9.676861 TCACACATATCAAGAAAAGATGAATCT 57.323 29.630 0.00 0.00 39.22 2.40
39 40 9.234827 ACATCACACATATCAAGAAAAGATGAA 57.765 29.630 0.00 0.00 34.73 2.57
40 41 8.797350 ACATCACACATATCAAGAAAAGATGA 57.203 30.769 0.00 0.00 34.73 2.92
43 44 9.500785 TGTAACATCACACATATCAAGAAAAGA 57.499 29.630 0.00 0.00 0.00 2.52
44 45 9.764870 CTGTAACATCACACATATCAAGAAAAG 57.235 33.333 0.00 0.00 0.00 2.27
45 46 9.283768 ACTGTAACATCACACATATCAAGAAAA 57.716 29.630 0.00 0.00 0.00 2.29
46 47 8.846943 ACTGTAACATCACACATATCAAGAAA 57.153 30.769 0.00 0.00 0.00 2.52
47 48 9.936759 TTACTGTAACATCACACATATCAAGAA 57.063 29.630 0.00 0.00 0.00 2.52
48 49 9.366216 GTTACTGTAACATCACACATATCAAGA 57.634 33.333 22.30 0.00 38.52 3.02
49 50 9.371136 AGTTACTGTAACATCACACATATCAAG 57.629 33.333 27.12 0.00 41.07 3.02
52 53 8.969267 GCTAGTTACTGTAACATCACACATATC 58.031 37.037 27.12 5.73 41.07 1.63
53 54 8.696374 AGCTAGTTACTGTAACATCACACATAT 58.304 33.333 27.12 9.43 41.07 1.78
54 55 8.063200 AGCTAGTTACTGTAACATCACACATA 57.937 34.615 27.12 11.12 41.07 2.29
55 56 6.936279 AGCTAGTTACTGTAACATCACACAT 58.064 36.000 27.12 10.64 41.07 3.21
56 57 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
57 58 7.974501 ACATAGCTAGTTACTGTAACATCACAC 59.025 37.037 27.12 13.16 41.07 3.82
58 59 8.063200 ACATAGCTAGTTACTGTAACATCACA 57.937 34.615 27.12 12.96 41.07 3.58
59 60 8.928270 AACATAGCTAGTTACTGTAACATCAC 57.072 34.615 27.12 15.70 41.07 3.06
81 82 9.851686 ATTAATGAAGAGAGGCATGTTATAACA 57.148 29.630 20.14 20.14 44.06 2.41
91 92 9.494271 GTGACATATAATTAATGAAGAGAGGCA 57.506 33.333 11.95 0.00 0.00 4.75
92 93 9.494271 TGTGACATATAATTAATGAAGAGAGGC 57.506 33.333 11.95 0.00 0.00 4.70
126 127 9.431887 GGTAACATCACACTTATCTAGACAAAA 57.568 33.333 0.00 0.00 0.00 2.44
127 128 8.590204 TGGTAACATCACACTTATCTAGACAAA 58.410 33.333 0.00 0.00 46.17 2.83
128 129 8.129496 TGGTAACATCACACTTATCTAGACAA 57.871 34.615 0.00 0.00 46.17 3.18
129 130 7.712204 TGGTAACATCACACTTATCTAGACA 57.288 36.000 0.00 0.00 46.17 3.41
147 148 5.163550 GCAAAATAGATGGGAAGGTGGTAAC 60.164 44.000 0.00 0.00 0.00 2.50
148 149 4.953579 GCAAAATAGATGGGAAGGTGGTAA 59.046 41.667 0.00 0.00 0.00 2.85
149 150 4.532834 GCAAAATAGATGGGAAGGTGGTA 58.467 43.478 0.00 0.00 0.00 3.25
150 151 3.365472 GCAAAATAGATGGGAAGGTGGT 58.635 45.455 0.00 0.00 0.00 4.16
151 152 2.358898 CGCAAAATAGATGGGAAGGTGG 59.641 50.000 0.00 0.00 32.93 4.61
152 153 2.223572 GCGCAAAATAGATGGGAAGGTG 60.224 50.000 0.30 0.00 32.93 4.00
153 154 2.024414 GCGCAAAATAGATGGGAAGGT 58.976 47.619 0.30 0.00 32.93 3.50
154 155 2.291741 GAGCGCAAAATAGATGGGAAGG 59.708 50.000 11.47 0.00 32.93 3.46
155 156 3.003068 CAGAGCGCAAAATAGATGGGAAG 59.997 47.826 11.47 0.00 32.93 3.46
156 157 2.945008 CAGAGCGCAAAATAGATGGGAA 59.055 45.455 11.47 0.00 32.93 3.97
157 158 2.092968 ACAGAGCGCAAAATAGATGGGA 60.093 45.455 11.47 0.00 32.93 4.37
158 159 2.292267 ACAGAGCGCAAAATAGATGGG 58.708 47.619 11.47 0.00 0.00 4.00
159 160 4.332543 TGTAACAGAGCGCAAAATAGATGG 59.667 41.667 11.47 0.00 0.00 3.51
160 161 5.063944 ACTGTAACAGAGCGCAAAATAGATG 59.936 40.000 11.47 0.00 35.18 2.90
161 162 5.178797 ACTGTAACAGAGCGCAAAATAGAT 58.821 37.500 11.47 0.00 35.18 1.98
162 163 4.566004 ACTGTAACAGAGCGCAAAATAGA 58.434 39.130 11.47 0.00 35.18 1.98
163 164 4.928661 ACTGTAACAGAGCGCAAAATAG 57.071 40.909 11.47 0.00 35.18 1.73
164 165 5.697178 TGTTACTGTAACAGAGCGCAAAATA 59.303 36.000 25.14 2.51 43.23 1.40
165 166 4.513692 TGTTACTGTAACAGAGCGCAAAAT 59.486 37.500 25.14 0.00 43.23 1.82
166 167 3.872182 TGTTACTGTAACAGAGCGCAAAA 59.128 39.130 25.14 3.16 43.23 2.44
167 168 3.459145 TGTTACTGTAACAGAGCGCAAA 58.541 40.909 25.14 3.82 43.23 3.68
168 169 3.100658 TGTTACTGTAACAGAGCGCAA 57.899 42.857 25.14 4.47 43.23 4.85
169 170 2.804697 TGTTACTGTAACAGAGCGCA 57.195 45.000 25.14 5.20 43.23 6.09
193 194 9.256228 TGAGGAGATAGTTGTTTAGAGTAACAT 57.744 33.333 0.00 0.00 37.81 2.71
194 195 8.645814 TGAGGAGATAGTTGTTTAGAGTAACA 57.354 34.615 0.00 0.00 36.30 2.41
206 207 9.915629 GGTATGTAGTTAATGAGGAGATAGTTG 57.084 37.037 0.00 0.00 0.00 3.16
207 208 9.656323 TGGTATGTAGTTAATGAGGAGATAGTT 57.344 33.333 0.00 0.00 0.00 2.24
208 209 9.830186 ATGGTATGTAGTTAATGAGGAGATAGT 57.170 33.333 0.00 0.00 0.00 2.12
234 235 8.167985 GCGCATTTCAAGAAAATTTTGCTTATA 58.832 29.630 8.47 1.89 35.32 0.98
235 236 7.017055 GCGCATTTCAAGAAAATTTTGCTTAT 58.983 30.769 8.47 0.90 35.32 1.73
236 237 6.202570 AGCGCATTTCAAGAAAATTTTGCTTA 59.797 30.769 11.47 0.00 34.95 3.09
237 238 5.007921 AGCGCATTTCAAGAAAATTTTGCTT 59.992 32.000 11.47 8.67 34.95 3.91
238 239 4.512571 AGCGCATTTCAAGAAAATTTTGCT 59.487 33.333 11.47 3.82 35.32 3.91
239 240 4.775664 AGCGCATTTCAAGAAAATTTTGC 58.224 34.783 11.47 2.64 35.32 3.68
240 241 7.512297 ACATAGCGCATTTCAAGAAAATTTTG 58.488 30.769 11.47 0.00 35.32 2.44
241 242 7.656707 ACATAGCGCATTTCAAGAAAATTTT 57.343 28.000 11.47 2.28 35.32 1.82
242 243 7.656707 AACATAGCGCATTTCAAGAAAATTT 57.343 28.000 11.47 0.00 35.32 1.82
243 244 8.028938 AGTAACATAGCGCATTTCAAGAAAATT 58.971 29.630 11.47 0.00 35.32 1.82
244 245 7.538575 AGTAACATAGCGCATTTCAAGAAAAT 58.461 30.769 11.47 0.00 38.11 1.82
245 246 6.908825 AGTAACATAGCGCATTTCAAGAAAA 58.091 32.000 11.47 0.00 33.56 2.29
246 247 6.494893 AGTAACATAGCGCATTTCAAGAAA 57.505 33.333 11.47 0.00 34.46 2.52
247 248 7.710907 AGATAGTAACATAGCGCATTTCAAGAA 59.289 33.333 11.47 0.00 0.00 2.52
248 249 7.210174 AGATAGTAACATAGCGCATTTCAAGA 58.790 34.615 11.47 0.00 0.00 3.02
249 250 7.413475 AGATAGTAACATAGCGCATTTCAAG 57.587 36.000 11.47 0.00 0.00 3.02
250 251 8.880878 TTAGATAGTAACATAGCGCATTTCAA 57.119 30.769 11.47 0.00 0.00 2.69
251 252 8.141909 ACTTAGATAGTAACATAGCGCATTTCA 58.858 33.333 11.47 0.00 34.56 2.69
252 253 8.522178 ACTTAGATAGTAACATAGCGCATTTC 57.478 34.615 11.47 0.00 34.56 2.17
253 254 8.888579 AACTTAGATAGTAACATAGCGCATTT 57.111 30.769 11.47 0.00 35.54 2.32
256 257 9.622004 GAATAACTTAGATAGTAACATAGCGCA 57.378 33.333 11.47 0.00 35.54 6.09
257 258 9.074443 GGAATAACTTAGATAGTAACATAGCGC 57.926 37.037 0.00 0.00 35.54 5.92
258 259 9.570488 GGGAATAACTTAGATAGTAACATAGCG 57.430 37.037 0.00 0.00 35.54 4.26
267 268 9.884814 AGTCATAGTGGGAATAACTTAGATAGT 57.115 33.333 0.00 0.00 39.32 2.12
270 271 8.808092 GCTAGTCATAGTGGGAATAACTTAGAT 58.192 37.037 0.00 0.00 0.00 1.98
271 272 7.232941 GGCTAGTCATAGTGGGAATAACTTAGA 59.767 40.741 0.00 0.00 0.00 2.10
272 273 7.015292 TGGCTAGTCATAGTGGGAATAACTTAG 59.985 40.741 0.00 0.00 0.00 2.18
273 274 6.842280 TGGCTAGTCATAGTGGGAATAACTTA 59.158 38.462 0.00 0.00 0.00 2.24
274 275 5.665812 TGGCTAGTCATAGTGGGAATAACTT 59.334 40.000 0.00 0.00 0.00 2.66
275 276 5.216622 TGGCTAGTCATAGTGGGAATAACT 58.783 41.667 0.00 0.00 0.00 2.24
276 277 5.070580 ACTGGCTAGTCATAGTGGGAATAAC 59.929 44.000 0.00 0.00 28.79 1.89
277 278 5.070446 CACTGGCTAGTCATAGTGGGAATAA 59.930 44.000 0.00 0.00 37.48 1.40
278 279 4.588951 CACTGGCTAGTCATAGTGGGAATA 59.411 45.833 0.00 0.00 37.48 1.75
279 280 3.389329 CACTGGCTAGTCATAGTGGGAAT 59.611 47.826 0.00 0.00 37.48 3.01
280 281 2.766263 CACTGGCTAGTCATAGTGGGAA 59.234 50.000 0.00 0.00 37.48 3.97
281 282 2.388735 CACTGGCTAGTCATAGTGGGA 58.611 52.381 0.00 0.00 37.48 4.37
282 283 2.898729 CACTGGCTAGTCATAGTGGG 57.101 55.000 0.00 0.00 37.48 4.61
284 285 2.231215 GCCACTGGCTAGTCATAGTG 57.769 55.000 13.28 9.22 46.69 2.74
302 303 2.027625 AGCTTGTACGTGGCTTCGC 61.028 57.895 0.00 0.00 31.81 4.70
303 304 1.626654 CCAGCTTGTACGTGGCTTCG 61.627 60.000 0.00 1.70 33.74 3.79
304 305 1.298859 CCCAGCTTGTACGTGGCTTC 61.299 60.000 0.00 0.00 33.74 3.86
305 306 1.302511 CCCAGCTTGTACGTGGCTT 60.303 57.895 0.00 0.00 33.74 4.35
306 307 1.189524 TACCCAGCTTGTACGTGGCT 61.190 55.000 0.00 0.00 36.70 4.75
307 308 0.739813 CTACCCAGCTTGTACGTGGC 60.740 60.000 0.00 0.00 0.00 5.01
308 309 0.606604 ACTACCCAGCTTGTACGTGG 59.393 55.000 0.00 0.00 0.00 4.94
309 310 1.271379 TGACTACCCAGCTTGTACGTG 59.729 52.381 0.00 0.00 0.00 4.49
310 311 1.624336 TGACTACCCAGCTTGTACGT 58.376 50.000 0.00 0.00 0.00 3.57
311 312 2.736144 TTGACTACCCAGCTTGTACG 57.264 50.000 0.00 0.00 0.00 3.67
312 313 4.392138 GTCAATTGACTACCCAGCTTGTAC 59.608 45.833 27.66 0.00 41.65 2.90
313 314 4.575885 GTCAATTGACTACCCAGCTTGTA 58.424 43.478 27.66 0.00 41.65 2.41
314 315 3.412386 GTCAATTGACTACCCAGCTTGT 58.588 45.455 27.66 0.00 41.65 3.16
324 325 7.776030 TCAAAAAGTTGGGTAGTCAATTGACTA 59.224 33.333 34.29 34.29 42.95 2.59
325 326 6.605594 TCAAAAAGTTGGGTAGTCAATTGACT 59.394 34.615 36.21 36.21 44.78 3.41
326 327 6.801575 TCAAAAAGTTGGGTAGTCAATTGAC 58.198 36.000 27.69 27.69 39.03 3.18
327 328 7.595819 ATCAAAAAGTTGGGTAGTCAATTGA 57.404 32.000 3.38 3.38 35.29 2.57
328 329 9.757227 TTTATCAAAAAGTTGGGTAGTCAATTG 57.243 29.630 0.00 0.00 35.29 2.32
330 331 9.758651 GTTTTATCAAAAAGTTGGGTAGTCAAT 57.241 29.630 0.00 0.00 35.29 2.57
331 332 8.973182 AGTTTTATCAAAAAGTTGGGTAGTCAA 58.027 29.630 0.00 0.00 35.18 3.18
332 333 8.528044 AGTTTTATCAAAAAGTTGGGTAGTCA 57.472 30.769 0.00 0.00 35.18 3.41
334 335 8.573885 GCTAGTTTTATCAAAAAGTTGGGTAGT 58.426 33.333 0.00 0.00 38.77 2.73
335 336 8.573035 TGCTAGTTTTATCAAAAAGTTGGGTAG 58.427 33.333 0.00 0.00 38.77 3.18
336 337 8.466617 TGCTAGTTTTATCAAAAAGTTGGGTA 57.533 30.769 0.00 0.00 38.77 3.69
337 338 7.354751 TGCTAGTTTTATCAAAAAGTTGGGT 57.645 32.000 0.00 0.00 38.77 4.51
365 366 9.715121 ACAATTTGTTTCAATATTTCTGCATCT 57.285 25.926 0.00 0.00 0.00 2.90
403 404 9.881529 GTCAATTTAAAACGGTGTAGTCAAATA 57.118 29.630 0.00 0.00 0.00 1.40
404 405 8.626526 AGTCAATTTAAAACGGTGTAGTCAAAT 58.373 29.630 0.00 0.00 0.00 2.32
405 406 7.987649 AGTCAATTTAAAACGGTGTAGTCAAA 58.012 30.769 0.00 0.00 0.00 2.69
406 407 7.556733 AGTCAATTTAAAACGGTGTAGTCAA 57.443 32.000 0.00 0.00 0.00 3.18
407 408 7.710044 TGTAGTCAATTTAAAACGGTGTAGTCA 59.290 33.333 0.00 0.00 0.00 3.41
408 409 8.006027 GTGTAGTCAATTTAAAACGGTGTAGTC 58.994 37.037 0.00 0.00 0.00 2.59
409 410 7.495279 TGTGTAGTCAATTTAAAACGGTGTAGT 59.505 33.333 0.00 0.00 0.00 2.73
410 411 7.853524 TGTGTAGTCAATTTAAAACGGTGTAG 58.146 34.615 0.00 0.00 0.00 2.74
411 412 7.783090 TGTGTAGTCAATTTAAAACGGTGTA 57.217 32.000 0.00 0.00 0.00 2.90
412 413 6.680874 TGTGTAGTCAATTTAAAACGGTGT 57.319 33.333 0.00 0.00 0.00 4.16
413 414 7.375017 GTCTTGTGTAGTCAATTTAAAACGGTG 59.625 37.037 0.00 0.00 0.00 4.94
414 415 7.066043 TGTCTTGTGTAGTCAATTTAAAACGGT 59.934 33.333 0.00 0.00 0.00 4.83
415 416 7.411274 TGTCTTGTGTAGTCAATTTAAAACGG 58.589 34.615 0.00 0.00 0.00 4.44
416 417 8.730427 GTTGTCTTGTGTAGTCAATTTAAAACG 58.270 33.333 0.00 0.00 35.04 3.60
417 418 9.562583 TGTTGTCTTGTGTAGTCAATTTAAAAC 57.437 29.630 0.00 0.00 35.04 2.43
421 422 9.944663 GAAATGTTGTCTTGTGTAGTCAATTTA 57.055 29.630 0.00 0.00 35.04 1.40
422 423 8.686334 AGAAATGTTGTCTTGTGTAGTCAATTT 58.314 29.630 0.00 0.00 35.04 1.82
423 424 8.131100 CAGAAATGTTGTCTTGTGTAGTCAATT 58.869 33.333 0.00 0.00 35.04 2.32
424 425 7.255242 CCAGAAATGTTGTCTTGTGTAGTCAAT 60.255 37.037 0.00 0.00 35.04 2.57
425 426 6.038161 CCAGAAATGTTGTCTTGTGTAGTCAA 59.962 38.462 0.00 0.00 30.95 3.18
426 427 5.527214 CCAGAAATGTTGTCTTGTGTAGTCA 59.473 40.000 0.00 0.00 0.00 3.41
427 428 5.560953 GCCAGAAATGTTGTCTTGTGTAGTC 60.561 44.000 0.00 0.00 0.00 2.59
428 429 4.275936 GCCAGAAATGTTGTCTTGTGTAGT 59.724 41.667 0.00 0.00 0.00 2.73
429 430 4.275689 TGCCAGAAATGTTGTCTTGTGTAG 59.724 41.667 0.00 0.00 0.00 2.74
430 431 4.036262 GTGCCAGAAATGTTGTCTTGTGTA 59.964 41.667 0.00 0.00 0.00 2.90
431 432 3.023119 TGCCAGAAATGTTGTCTTGTGT 58.977 40.909 0.00 0.00 0.00 3.72
432 433 3.374745 GTGCCAGAAATGTTGTCTTGTG 58.625 45.455 0.00 0.00 0.00 3.33
433 434 2.362077 GGTGCCAGAAATGTTGTCTTGT 59.638 45.455 0.00 0.00 0.00 3.16
434 435 2.605338 CGGTGCCAGAAATGTTGTCTTG 60.605 50.000 0.00 0.00 0.00 3.02
435 436 1.608590 CGGTGCCAGAAATGTTGTCTT 59.391 47.619 0.00 0.00 0.00 3.01
436 437 1.238439 CGGTGCCAGAAATGTTGTCT 58.762 50.000 0.00 0.00 0.00 3.41
437 438 0.387239 GCGGTGCCAGAAATGTTGTC 60.387 55.000 0.00 0.00 0.00 3.18
438 439 1.659794 GCGGTGCCAGAAATGTTGT 59.340 52.632 0.00 0.00 0.00 3.32
439 440 4.557942 GCGGTGCCAGAAATGTTG 57.442 55.556 0.00 0.00 0.00 3.33
450 451 1.738099 CTAGTCACAGTGGCGGTGC 60.738 63.158 0.00 0.00 36.22 5.01
451 452 1.738099 GCTAGTCACAGTGGCGGTG 60.738 63.158 0.00 0.00 37.60 4.94
452 453 2.657237 GCTAGTCACAGTGGCGGT 59.343 61.111 0.00 0.00 0.00 5.68
453 454 2.125512 GGCTAGTCACAGTGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
454 455 1.153745 GAGGCTAGTCACAGTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
455 456 0.108424 CTGAGGCTAGTCACAGTGGC 60.108 60.000 13.02 0.00 0.00 5.01
456 457 0.534412 CCTGAGGCTAGTCACAGTGG 59.466 60.000 18.64 3.64 0.00 4.00
457 458 0.108424 GCCTGAGGCTAGTCACAGTG 60.108 60.000 17.96 11.92 46.69 3.66
458 459 2.281830 GCCTGAGGCTAGTCACAGT 58.718 57.895 17.96 0.00 46.69 3.55
469 470 0.467384 CCACTATGACCAGCCTGAGG 59.533 60.000 0.00 0.00 0.00 3.86
470 471 0.467384 CCCACTATGACCAGCCTGAG 59.533 60.000 0.00 0.00 0.00 3.35
471 472 0.042581 TCCCACTATGACCAGCCTGA 59.957 55.000 0.00 0.00 0.00 3.86
472 473 0.911769 TTCCCACTATGACCAGCCTG 59.088 55.000 0.00 0.00 0.00 4.85
473 474 1.207791 CTTCCCACTATGACCAGCCT 58.792 55.000 0.00 0.00 0.00 4.58
474 475 0.912486 ACTTCCCACTATGACCAGCC 59.088 55.000 0.00 0.00 0.00 4.85
475 476 3.197983 AGTTACTTCCCACTATGACCAGC 59.802 47.826 0.00 0.00 0.00 4.85
476 477 5.422214 AAGTTACTTCCCACTATGACCAG 57.578 43.478 0.00 0.00 0.00 4.00
477 478 6.154021 GTCTAAGTTACTTCCCACTATGACCA 59.846 42.308 0.00 0.00 0.00 4.02
478 479 6.380560 AGTCTAAGTTACTTCCCACTATGACC 59.619 42.308 0.00 0.00 31.22 4.02
479 480 7.407393 AGTCTAAGTTACTTCCCACTATGAC 57.593 40.000 0.00 0.00 0.00 3.06
480 481 8.334734 ACTAGTCTAAGTTACTTCCCACTATGA 58.665 37.037 0.00 0.00 0.00 2.15
481 482 8.407064 CACTAGTCTAAGTTACTTCCCACTATG 58.593 40.741 0.00 4.33 0.00 2.23
482 483 8.114743 ACACTAGTCTAAGTTACTTCCCACTAT 58.885 37.037 0.00 0.00 0.00 2.12
483 484 7.465116 ACACTAGTCTAAGTTACTTCCCACTA 58.535 38.462 0.00 5.84 0.00 2.74
484 485 6.313324 ACACTAGTCTAAGTTACTTCCCACT 58.687 40.000 0.00 4.98 0.00 4.00
485 486 6.587206 ACACTAGTCTAAGTTACTTCCCAC 57.413 41.667 0.00 0.00 0.00 4.61
486 487 8.890410 ATAACACTAGTCTAAGTTACTTCCCA 57.110 34.615 0.00 0.00 30.19 4.37
494 495 9.751542 GTCATGCATATAACACTAGTCTAAGTT 57.248 33.333 0.00 0.00 0.00 2.66
495 496 8.914011 TGTCATGCATATAACACTAGTCTAAGT 58.086 33.333 0.00 0.00 0.00 2.24
496 497 9.186323 GTGTCATGCATATAACACTAGTCTAAG 57.814 37.037 22.38 0.00 39.09 2.18
505 506 9.186323 CTTAGACTAGTGTCATGCATATAACAC 57.814 37.037 22.26 22.26 45.20 3.32
506 507 8.914011 ACTTAGACTAGTGTCATGCATATAACA 58.086 33.333 0.00 1.44 45.20 2.41
507 508 9.751542 AACTTAGACTAGTGTCATGCATATAAC 57.248 33.333 0.00 0.00 45.20 1.89
510 511 9.137459 AGTAACTTAGACTAGTGTCATGCATAT 57.863 33.333 0.00 0.00 45.20 1.78
511 512 8.521170 AGTAACTTAGACTAGTGTCATGCATA 57.479 34.615 0.00 0.00 45.20 3.14
512 513 7.411486 AGTAACTTAGACTAGTGTCATGCAT 57.589 36.000 0.00 0.00 45.20 3.96
513 514 6.835819 AGTAACTTAGACTAGTGTCATGCA 57.164 37.500 0.00 0.00 45.20 3.96
514 515 8.842280 AGATAGTAACTTAGACTAGTGTCATGC 58.158 37.037 0.00 0.00 45.20 4.06
517 518 9.955102 TGAAGATAGTAACTTAGACTAGTGTCA 57.045 33.333 0.00 0.00 45.20 3.58
544 545 9.884636 ACACTACTATCATGTTACTTTGCATTA 57.115 29.630 0.00 0.00 0.00 1.90
545 546 8.792830 ACACTACTATCATGTTACTTTGCATT 57.207 30.769 0.00 0.00 0.00 3.56
546 547 8.040727 TGACACTACTATCATGTTACTTTGCAT 58.959 33.333 0.00 0.00 0.00 3.96
547 548 7.382898 TGACACTACTATCATGTTACTTTGCA 58.617 34.615 0.00 0.00 0.00 4.08
548 549 7.827819 TGACACTACTATCATGTTACTTTGC 57.172 36.000 0.00 0.00 0.00 3.68
553 554 9.847706 CCATCTATGACACTACTATCATGTTAC 57.152 37.037 0.00 0.00 36.26 2.50
554 555 8.523658 GCCATCTATGACACTACTATCATGTTA 58.476 37.037 0.00 0.00 36.26 2.41
555 556 7.234371 AGCCATCTATGACACTACTATCATGTT 59.766 37.037 0.00 0.00 36.26 2.71
556 557 6.723515 AGCCATCTATGACACTACTATCATGT 59.276 38.462 0.00 0.00 36.26 3.21
557 558 7.167924 AGCCATCTATGACACTACTATCATG 57.832 40.000 0.00 0.00 36.26 3.07
558 559 7.789202 AAGCCATCTATGACACTACTATCAT 57.211 36.000 0.00 0.00 38.99 2.45
559 560 7.603180 AAAGCCATCTATGACACTACTATCA 57.397 36.000 0.00 0.00 0.00 2.15
576 577 9.853177 AGTCTACAAGCTAATAAATAAAGCCAT 57.147 29.630 0.00 0.00 36.92 4.40
577 578 9.326413 GAGTCTACAAGCTAATAAATAAAGCCA 57.674 33.333 0.00 0.00 36.92 4.75
578 579 9.326413 TGAGTCTACAAGCTAATAAATAAAGCC 57.674 33.333 0.00 0.00 36.92 4.35
585 586 9.587772 GACAAGATGAGTCTACAAGCTAATAAA 57.412 33.333 0.00 0.00 33.30 1.40
586 587 8.972127 AGACAAGATGAGTCTACAAGCTAATAA 58.028 33.333 0.00 0.00 44.10 1.40
587 588 8.526667 AGACAAGATGAGTCTACAAGCTAATA 57.473 34.615 0.00 0.00 44.10 0.98
588 589 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
589 590 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
590 591 6.350528 CCAAGACAAGATGAGTCTACAAGCTA 60.351 42.308 0.00 0.00 45.11 3.32
591 592 5.477510 CAAGACAAGATGAGTCTACAAGCT 58.522 41.667 0.00 0.00 45.11 3.74
592 593 4.629200 CCAAGACAAGATGAGTCTACAAGC 59.371 45.833 0.00 0.00 45.11 4.01
593 594 6.030548 TCCAAGACAAGATGAGTCTACAAG 57.969 41.667 0.00 0.00 45.11 3.16
594 595 6.419484 TTCCAAGACAAGATGAGTCTACAA 57.581 37.500 0.00 0.00 45.11 2.41
595 596 6.042093 ACTTTCCAAGACAAGATGAGTCTACA 59.958 38.462 0.00 0.00 45.11 2.74
596 597 6.367422 CACTTTCCAAGACAAGATGAGTCTAC 59.633 42.308 0.00 0.00 45.11 2.59
597 598 6.459066 CACTTTCCAAGACAAGATGAGTCTA 58.541 40.000 0.00 0.00 45.11 2.59
599 600 4.083590 GCACTTTCCAAGACAAGATGAGTC 60.084 45.833 0.00 0.00 36.26 3.36
600 601 3.817647 GCACTTTCCAAGACAAGATGAGT 59.182 43.478 0.00 0.00 0.00 3.41
601 602 4.070716 AGCACTTTCCAAGACAAGATGAG 58.929 43.478 0.00 0.00 0.00 2.90
602 603 4.090761 AGCACTTTCCAAGACAAGATGA 57.909 40.909 0.00 0.00 0.00 2.92
603 604 5.413833 ACATAGCACTTTCCAAGACAAGATG 59.586 40.000 0.00 0.00 0.00 2.90
604 605 5.564550 ACATAGCACTTTCCAAGACAAGAT 58.435 37.500 0.00 0.00 0.00 2.40
605 606 4.973168 ACATAGCACTTTCCAAGACAAGA 58.027 39.130 0.00 0.00 0.00 3.02
606 607 5.695851 AACATAGCACTTTCCAAGACAAG 57.304 39.130 0.00 0.00 0.00 3.16
607 608 6.017440 GTGTAACATAGCACTTTCCAAGACAA 60.017 38.462 0.00 0.00 36.32 3.18
608 609 5.468746 GTGTAACATAGCACTTTCCAAGACA 59.531 40.000 0.00 0.00 36.32 3.41
609 610 5.701290 AGTGTAACATAGCACTTTCCAAGAC 59.299 40.000 0.00 0.00 42.61 3.01
610 611 5.865085 AGTGTAACATAGCACTTTCCAAGA 58.135 37.500 0.00 0.00 42.61 3.02
611 612 7.172532 TGTTAGTGTAACATAGCACTTTCCAAG 59.827 37.037 2.48 0.00 43.23 3.61
612 613 6.993308 TGTTAGTGTAACATAGCACTTTCCAA 59.007 34.615 2.48 0.00 43.23 3.53
613 614 6.526526 TGTTAGTGTAACATAGCACTTTCCA 58.473 36.000 2.48 0.00 43.23 3.53
644 645 7.248437 GCAAGTATTTAATGTGAGGTGGTAAC 58.752 38.462 0.00 0.00 0.00 2.50
645 646 6.376018 GGCAAGTATTTAATGTGAGGTGGTAA 59.624 38.462 0.00 0.00 0.00 2.85
646 647 5.883673 GGCAAGTATTTAATGTGAGGTGGTA 59.116 40.000 0.00 0.00 0.00 3.25
647 648 4.705023 GGCAAGTATTTAATGTGAGGTGGT 59.295 41.667 0.00 0.00 0.00 4.16
648 649 4.704540 TGGCAAGTATTTAATGTGAGGTGG 59.295 41.667 0.00 0.00 0.00 4.61
649 650 5.182950 TGTGGCAAGTATTTAATGTGAGGTG 59.817 40.000 0.00 0.00 0.00 4.00
650 651 5.321102 TGTGGCAAGTATTTAATGTGAGGT 58.679 37.500 0.00 0.00 0.00 3.85
651 652 5.895636 TGTGGCAAGTATTTAATGTGAGG 57.104 39.130 0.00 0.00 0.00 3.86
652 653 9.289303 GTTTATGTGGCAAGTATTTAATGTGAG 57.711 33.333 0.00 0.00 0.00 3.51
653 654 8.797438 TGTTTATGTGGCAAGTATTTAATGTGA 58.203 29.630 0.00 0.00 0.00 3.58
654 655 8.978564 TGTTTATGTGGCAAGTATTTAATGTG 57.021 30.769 0.00 0.00 0.00 3.21
655 656 9.988815 TTTGTTTATGTGGCAAGTATTTAATGT 57.011 25.926 0.00 0.00 0.00 2.71
662 663 9.777297 AGAAATTTTTGTTTATGTGGCAAGTAT 57.223 25.926 0.00 0.00 0.00 2.12
663 664 9.606631 AAGAAATTTTTGTTTATGTGGCAAGTA 57.393 25.926 0.00 0.00 0.00 2.24
664 665 8.397148 CAAGAAATTTTTGTTTATGTGGCAAGT 58.603 29.630 0.00 0.00 0.00 3.16
665 666 8.610896 TCAAGAAATTTTTGTTTATGTGGCAAG 58.389 29.630 0.00 0.00 0.00 4.01
666 667 8.498054 TCAAGAAATTTTTGTTTATGTGGCAA 57.502 26.923 0.00 0.00 0.00 4.52
667 668 8.498054 TTCAAGAAATTTTTGTTTATGTGGCA 57.502 26.923 0.00 0.00 0.00 4.92
668 669 8.611757 ACTTCAAGAAATTTTTGTTTATGTGGC 58.388 29.630 0.00 0.00 0.00 5.01
672 673 9.777843 GCGTACTTCAAGAAATTTTTGTTTATG 57.222 29.630 0.00 1.35 0.00 1.90
673 674 9.744468 AGCGTACTTCAAGAAATTTTTGTTTAT 57.256 25.926 0.00 0.00 0.00 1.40
675 676 9.744468 ATAGCGTACTTCAAGAAATTTTTGTTT 57.256 25.926 0.00 0.00 0.00 2.83
676 677 9.180678 CATAGCGTACTTCAAGAAATTTTTGTT 57.819 29.630 0.00 0.00 0.00 2.83
677 678 8.349983 ACATAGCGTACTTCAAGAAATTTTTGT 58.650 29.630 0.00 0.00 0.00 2.83
678 679 8.728088 ACATAGCGTACTTCAAGAAATTTTTG 57.272 30.769 0.00 0.00 0.00 2.44
680 681 9.821662 GTAACATAGCGTACTTCAAGAAATTTT 57.178 29.630 0.00 0.00 0.00 1.82
681 682 9.216117 AGTAACATAGCGTACTTCAAGAAATTT 57.784 29.630 0.00 0.00 0.00 1.82
682 683 8.656849 CAGTAACATAGCGTACTTCAAGAAATT 58.343 33.333 0.00 0.00 0.00 1.82
683 684 7.277981 CCAGTAACATAGCGTACTTCAAGAAAT 59.722 37.037 0.00 0.00 0.00 2.17
684 685 6.588756 CCAGTAACATAGCGTACTTCAAGAAA 59.411 38.462 0.00 0.00 0.00 2.52
685 686 6.097356 CCAGTAACATAGCGTACTTCAAGAA 58.903 40.000 0.00 0.00 0.00 2.52
686 687 5.647589 CCAGTAACATAGCGTACTTCAAGA 58.352 41.667 0.00 0.00 0.00 3.02
687 688 4.267928 GCCAGTAACATAGCGTACTTCAAG 59.732 45.833 0.00 0.00 0.00 3.02
688 689 4.081862 AGCCAGTAACATAGCGTACTTCAA 60.082 41.667 0.00 0.00 0.00 2.69
689 690 3.446161 AGCCAGTAACATAGCGTACTTCA 59.554 43.478 0.00 0.00 0.00 3.02
690 691 4.043037 AGCCAGTAACATAGCGTACTTC 57.957 45.455 0.00 0.00 0.00 3.01
691 692 5.126707 ACTTAGCCAGTAACATAGCGTACTT 59.873 40.000 0.00 0.00 31.97 2.24
692 693 4.643784 ACTTAGCCAGTAACATAGCGTACT 59.356 41.667 0.00 0.00 31.97 2.73
693 694 4.929781 ACTTAGCCAGTAACATAGCGTAC 58.070 43.478 0.00 0.00 31.97 3.67
694 695 5.587388 AACTTAGCCAGTAACATAGCGTA 57.413 39.130 0.00 0.00 32.94 4.42
695 696 4.467198 AACTTAGCCAGTAACATAGCGT 57.533 40.909 0.00 0.00 32.94 5.07
696 697 5.589192 AGTAACTTAGCCAGTAACATAGCG 58.411 41.667 0.00 0.00 32.94 4.26
697 698 5.984323 GGAGTAACTTAGCCAGTAACATAGC 59.016 44.000 0.00 0.00 32.94 2.97
698 699 6.097839 TGGGAGTAACTTAGCCAGTAACATAG 59.902 42.308 0.00 0.00 32.94 2.23
699 700 5.959594 TGGGAGTAACTTAGCCAGTAACATA 59.040 40.000 0.00 0.00 32.94 2.29
700 701 4.781087 TGGGAGTAACTTAGCCAGTAACAT 59.219 41.667 0.00 0.00 32.94 2.71
701 702 4.020839 GTGGGAGTAACTTAGCCAGTAACA 60.021 45.833 0.00 0.00 32.94 2.41
702 703 4.222366 AGTGGGAGTAACTTAGCCAGTAAC 59.778 45.833 0.00 0.00 32.94 2.50
703 704 4.422984 AGTGGGAGTAACTTAGCCAGTAA 58.577 43.478 0.00 0.00 32.94 2.24
704 705 4.057063 AGTGGGAGTAACTTAGCCAGTA 57.943 45.455 0.00 0.00 32.94 2.74
705 706 2.903926 AGTGGGAGTAACTTAGCCAGT 58.096 47.619 0.00 0.00 37.30 4.00
706 707 4.649674 TCATAGTGGGAGTAACTTAGCCAG 59.350 45.833 0.00 0.00 0.00 4.85
707 708 4.404715 GTCATAGTGGGAGTAACTTAGCCA 59.595 45.833 0.00 0.00 0.00 4.75
708 709 4.650131 AGTCATAGTGGGAGTAACTTAGCC 59.350 45.833 0.00 0.00 0.00 3.93
709 710 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
710 711 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
711 712 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
712 713 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
713 714 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
714 715 4.038162 CAGGCTAGTCATAGTGGGAGTAAC 59.962 50.000 0.00 0.00 0.00 2.50
715 716 4.079385 TCAGGCTAGTCATAGTGGGAGTAA 60.079 45.833 0.00 0.00 0.00 2.24
716 717 3.462205 TCAGGCTAGTCATAGTGGGAGTA 59.538 47.826 0.00 0.00 0.00 2.59
717 718 2.245028 TCAGGCTAGTCATAGTGGGAGT 59.755 50.000 0.00 0.00 0.00 3.85
718 719 2.625790 GTCAGGCTAGTCATAGTGGGAG 59.374 54.545 0.00 0.00 0.00 4.30
719 720 2.667470 GTCAGGCTAGTCATAGTGGGA 58.333 52.381 0.00 0.00 0.00 4.37
720 721 1.689273 GGTCAGGCTAGTCATAGTGGG 59.311 57.143 0.00 0.00 0.00 4.61
721 722 1.689273 GGGTCAGGCTAGTCATAGTGG 59.311 57.143 0.00 0.00 0.00 4.00
722 723 1.689273 GGGGTCAGGCTAGTCATAGTG 59.311 57.143 0.00 0.00 0.00 2.74
723 724 1.413227 GGGGGTCAGGCTAGTCATAGT 60.413 57.143 0.00 0.00 0.00 2.12
724 725 1.133009 AGGGGGTCAGGCTAGTCATAG 60.133 57.143 0.00 0.00 0.00 2.23
725 726 0.941963 AGGGGGTCAGGCTAGTCATA 59.058 55.000 0.00 0.00 0.00 2.15
726 727 0.399233 GAGGGGGTCAGGCTAGTCAT 60.399 60.000 0.00 0.00 0.00 3.06
727 728 1.001760 GAGGGGGTCAGGCTAGTCA 59.998 63.158 0.00 0.00 0.00 3.41
728 729 1.762858 GGAGGGGGTCAGGCTAGTC 60.763 68.421 0.00 0.00 0.00 2.59
729 730 2.369001 GGAGGGGGTCAGGCTAGT 59.631 66.667 0.00 0.00 0.00 2.57
730 731 2.446802 GGGAGGGGGTCAGGCTAG 60.447 72.222 0.00 0.00 0.00 3.42
731 732 2.621672 GATGGGAGGGGGTCAGGCTA 62.622 65.000 0.00 0.00 0.00 3.93
732 733 4.044390 ATGGGAGGGGGTCAGGCT 62.044 66.667 0.00 0.00 0.00 4.58
733 734 3.493303 GATGGGAGGGGGTCAGGC 61.493 72.222 0.00 0.00 0.00 4.85
734 735 0.995675 AATGATGGGAGGGGGTCAGG 60.996 60.000 0.00 0.00 0.00 3.86
735 736 0.475906 GAATGATGGGAGGGGGTCAG 59.524 60.000 0.00 0.00 0.00 3.51
736 737 0.993509 GGAATGATGGGAGGGGGTCA 60.994 60.000 0.00 0.00 0.00 4.02
737 738 1.846973 GGAATGATGGGAGGGGGTC 59.153 63.158 0.00 0.00 0.00 4.46
738 739 2.078665 CGGAATGATGGGAGGGGGT 61.079 63.158 0.00 0.00 0.00 4.95
739 740 2.839098 CGGAATGATGGGAGGGGG 59.161 66.667 0.00 0.00 0.00 5.40
740 741 2.113986 GCGGAATGATGGGAGGGG 59.886 66.667 0.00 0.00 0.00 4.79
741 742 2.113986 GGCGGAATGATGGGAGGG 59.886 66.667 0.00 0.00 0.00 4.30
742 743 2.281070 CGGCGGAATGATGGGAGG 60.281 66.667 0.00 0.00 0.00 4.30
743 744 2.281070 CCGGCGGAATGATGGGAG 60.281 66.667 24.41 0.00 0.00 4.30
774 775 2.251642 GGAGGTGTCTTTTGCGCGT 61.252 57.895 8.43 0.00 0.00 6.01
803 805 0.321653 GACCTGCCTGAATTGACGGT 60.322 55.000 0.00 0.00 0.00 4.83
986 1000 1.280421 GTCTCATGAAGGCAGAAGGGT 59.720 52.381 0.00 0.00 0.00 4.34
992 1006 1.138661 GGAGGAGTCTCATGAAGGCAG 59.861 57.143 1.47 0.00 41.69 4.85
1289 1305 4.826274 TTCTCGAGATCCACAAATTCCT 57.174 40.909 17.44 0.00 0.00 3.36
1336 1353 2.574006 TCATTTCAGCAACTGAGGCT 57.426 45.000 0.00 0.00 41.75 4.58
1405 1422 4.150627 CACTGAACACCTTATTCGACAGTG 59.849 45.833 0.00 0.00 44.42 3.66
1423 1440 5.084519 AGGGAGTACTACAAATGACACTGA 58.915 41.667 7.57 0.00 0.00 3.41
1463 1480 6.076981 GGAATTAACTGCCGATGAAATGAT 57.923 37.500 0.00 0.00 0.00 2.45
1506 1547 5.772393 AACCCACTACACATCTAATCCAA 57.228 39.130 0.00 0.00 0.00 3.53
1549 1590 4.038522 CCACTTCCGAGAGATCACACATAT 59.961 45.833 0.00 0.00 0.00 1.78
1792 2062 1.442769 CTGTCCAATGTCTCCAACCG 58.557 55.000 0.00 0.00 0.00 4.44
2266 2537 5.638596 AAGGGGCTTAAATCAAACTTACG 57.361 39.130 0.00 0.00 0.00 3.18
2300 2571 1.665679 CATTTAGCGCCGTGACTTGAT 59.334 47.619 2.29 0.00 0.00 2.57
2810 3081 6.296026 TGTGTCAAATAGCAGAGTACCTTTT 58.704 36.000 0.00 0.00 0.00 2.27
2971 3245 3.072468 CACCAAGCCCCATGCCAG 61.072 66.667 0.00 0.00 42.71 4.85
3041 3315 3.882888 TGAGACCAAGGACAAAATGTGAC 59.117 43.478 0.00 0.00 0.00 3.67
3051 3325 7.901029 TGATTAGATATCATGAGACCAAGGAC 58.099 38.462 5.32 0.00 0.00 3.85
3282 3557 6.644592 CGGATTTGCCTTTTAATCAAGTTCAA 59.355 34.615 0.00 0.00 33.43 2.69
3513 3792 3.159213 TCATTTCTGCACATGTCCCTT 57.841 42.857 0.00 0.00 0.00 3.95
3694 3979 4.939509 ATAACTTTGTCATACGGTGCAC 57.060 40.909 8.80 8.80 0.00 4.57
3721 4006 0.892755 TGAGTGCCCTAAGTGTACCG 59.107 55.000 0.00 0.00 0.00 4.02
3738 4023 5.690865 ACAGTCTCAATTTAAGTGGGTTGA 58.309 37.500 6.56 0.00 0.00 3.18
3753 4038 3.869912 GCCCAAGCATCTAAACAGTCTCA 60.870 47.826 0.00 0.00 39.53 3.27
3791 4076 3.379057 TGCAGAAGATATGAACGTCCGTA 59.621 43.478 0.00 0.00 0.00 4.02
3810 4096 1.543358 TGTGCTTGAACTTGTGTTGCA 59.457 42.857 0.00 0.00 36.39 4.08
3860 4146 4.217118 CAGCTTGCAGGTTTGAAGTAGATT 59.783 41.667 0.00 0.00 0.00 2.40
4290 4580 0.040351 ACTAGGTCTCTGCCAGCTGA 59.960 55.000 17.39 0.00 0.00 4.26
4304 4594 5.975693 TTAATTCCTGCAACCAAACTAGG 57.024 39.130 0.00 0.00 0.00 3.02
4336 4626 0.458669 GGGTCATGAAATGCTGGCAG 59.541 55.000 10.94 10.94 46.21 4.85
4418 4708 0.933509 CCGACGCAACTATACTCGGC 60.934 60.000 0.00 0.00 37.68 5.54
4670 4964 7.507277 AGCTAGACTACCAGATTATCATGTTCA 59.493 37.037 0.00 0.00 0.00 3.18
4672 4966 7.847711 AGCTAGACTACCAGATTATCATGTT 57.152 36.000 0.00 0.00 0.00 2.71
4750 5051 3.071892 TGGGCCCTAATATGAACGTTAGG 59.928 47.826 25.70 2.79 44.21 2.69
4753 5054 3.655615 TTGGGCCCTAATATGAACGTT 57.344 42.857 25.70 0.00 0.00 3.99
4808 8337 2.099263 GACCAGCATACTGTAGCTTCGA 59.901 50.000 0.00 0.00 42.81 3.71
4809 8338 2.464865 GACCAGCATACTGTAGCTTCG 58.535 52.381 0.00 5.74 42.81 3.79
4872 8413 3.496331 CAAAAACCTTGGGAGAGGCTAA 58.504 45.455 0.00 0.00 40.65 3.09
4936 8480 1.212616 GCACGAATGGCTGCTACTAG 58.787 55.000 0.00 0.00 0.00 2.57
5091 8635 1.072505 GGAGTCCTTGGCGTTGGAA 59.927 57.895 0.41 0.00 33.72 3.53
5184 8728 0.177373 TCTCCTCGTCGCTGCTACTA 59.823 55.000 2.75 0.00 0.00 1.82
5187 8731 2.473760 GCTCTCCTCGTCGCTGCTA 61.474 63.158 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.