Multiple sequence alignment - TraesCS4D01G183200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G183200 chr4D 100.000 3755 0 0 1 3755 320213995 320210241 0.000000e+00 6935.0
1 TraesCS4D01G183200 chr4D 95.161 806 39 0 1 806 260686821 260687626 0.000000e+00 1273.0
2 TraesCS4D01G183200 chr4D 98.551 69 1 0 805 873 260687704 260687636 5.090000e-24 122.0
3 TraesCS4D01G183200 chr4A 92.591 2092 74 35 873 2923 152649896 152651947 0.000000e+00 2929.0
4 TraesCS4D01G183200 chr4A 96.759 432 8 3 3324 3755 152738589 152739014 0.000000e+00 715.0
5 TraesCS4D01G183200 chr4A 87.864 206 7 4 3117 3322 152734502 152734689 3.770000e-55 226.0
6 TraesCS4D01G183200 chr4A 98.551 69 1 0 805 873 157854235 157854303 5.090000e-24 122.0
7 TraesCS4D01G183200 chr4B 89.764 2120 75 60 873 2916 400397052 400399105 0.000000e+00 2582.0
8 TraesCS4D01G183200 chr4B 96.991 432 5 2 3324 3755 400399476 400399899 0.000000e+00 719.0
9 TraesCS4D01G183200 chr4B 93.407 182 11 1 2958 3139 400399112 400399292 6.180000e-68 268.0
10 TraesCS4D01G183200 chr4B 94.521 73 4 0 3224 3296 400399308 400399380 3.070000e-21 113.0
11 TraesCS4D01G183200 chr1B 90.695 1827 75 32 1009 2762 638034428 638036232 0.000000e+00 2344.0
12 TraesCS4D01G183200 chr1B 92.795 805 56 1 1 805 631621482 631622284 0.000000e+00 1164.0
13 TraesCS4D01G183200 chr1B 95.652 69 3 0 805 873 631622363 631622295 1.100000e-20 111.0
14 TraesCS4D01G183200 chr1B 94.286 70 4 0 2844 2913 638043174 638043243 1.430000e-19 108.0
15 TraesCS4D01G183200 chr2D 97.395 806 21 0 1 806 15842314 15841509 0.000000e+00 1373.0
16 TraesCS4D01G183200 chr2D 97.101 69 2 0 805 873 15841431 15841499 2.370000e-22 117.0
17 TraesCS4D01G183200 chr2D 85.246 61 7 2 2625 2684 16058471 16058530 1.130000e-05 62.1
18 TraesCS4D01G183200 chr7D 96.898 806 21 1 1 806 124837591 124836790 0.000000e+00 1347.0
19 TraesCS4D01G183200 chr7D 98.551 69 1 0 805 873 124836712 124836780 5.090000e-24 122.0
20 TraesCS4D01G183200 chr7D 93.333 45 3 0 1419 1463 144147703 144147659 2.420000e-07 67.6
21 TraesCS4D01G183200 chr6D 96.402 806 29 0 1 806 362301306 362300501 0.000000e+00 1328.0
22 TraesCS4D01G183200 chr6D 96.204 764 29 0 1 764 426089196 426088433 0.000000e+00 1251.0
23 TraesCS4D01G183200 chr6D 100.000 69 0 0 805 873 362300423 362300491 1.090000e-25 128.0
24 TraesCS4D01G183200 chr6D 98.551 69 1 0 805 873 426088346 426088414 5.090000e-24 122.0
25 TraesCS4D01G183200 chr5D 95.906 806 33 0 1 806 449911997 449911192 0.000000e+00 1306.0
26 TraesCS4D01G183200 chr5D 100.000 69 0 0 805 873 449911114 449911182 1.090000e-25 128.0
27 TraesCS4D01G183200 chr3A 93.424 806 52 1 1 806 101102636 101103440 0.000000e+00 1194.0
28 TraesCS4D01G183200 chr3A 95.522 67 3 0 807 873 101103516 101103450 1.430000e-19 108.0
29 TraesCS4D01G183200 chr2B 90.727 798 72 2 5 801 641727946 641728742 0.000000e+00 1062.0
30 TraesCS4D01G183200 chr2B 100.000 46 0 0 2914 2959 678369896 678369851 6.680000e-13 86.1
31 TraesCS4D01G183200 chr2B 82.278 79 10 4 2608 2684 28325209 28325285 8.710000e-07 65.8
32 TraesCS4D01G183200 chr7A 91.667 48 4 0 1416 1463 145462193 145462240 2.420000e-07 67.6
33 TraesCS4D01G183200 chr2A 80.769 78 13 2 2608 2684 17956215 17956291 4.050000e-05 60.2
34 TraesCS4D01G183200 chr2A 84.746 59 7 2 2627 2684 17988660 17988717 1.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G183200 chr4D 320210241 320213995 3754 True 6935.0 6935 100.00000 1 3755 1 chr4D.!!$R2 3754
1 TraesCS4D01G183200 chr4D 260686821 260687626 805 False 1273.0 1273 95.16100 1 806 1 chr4D.!!$F1 805
2 TraesCS4D01G183200 chr4A 152649896 152651947 2051 False 2929.0 2929 92.59100 873 2923 1 chr4A.!!$F1 2050
3 TraesCS4D01G183200 chr4A 152734502 152739014 4512 False 470.5 715 92.31150 3117 3755 2 chr4A.!!$F3 638
4 TraesCS4D01G183200 chr4B 400397052 400399899 2847 False 920.5 2582 93.67075 873 3755 4 chr4B.!!$F1 2882
5 TraesCS4D01G183200 chr1B 638034428 638036232 1804 False 2344.0 2344 90.69500 1009 2762 1 chr1B.!!$F2 1753
6 TraesCS4D01G183200 chr1B 631621482 631622284 802 False 1164.0 1164 92.79500 1 805 1 chr1B.!!$F1 804
7 TraesCS4D01G183200 chr2D 15841509 15842314 805 True 1373.0 1373 97.39500 1 806 1 chr2D.!!$R1 805
8 TraesCS4D01G183200 chr7D 124836790 124837591 801 True 1347.0 1347 96.89800 1 806 1 chr7D.!!$R1 805
9 TraesCS4D01G183200 chr6D 362300501 362301306 805 True 1328.0 1328 96.40200 1 806 1 chr6D.!!$R1 805
10 TraesCS4D01G183200 chr6D 426088433 426089196 763 True 1251.0 1251 96.20400 1 764 1 chr6D.!!$R2 763
11 TraesCS4D01G183200 chr5D 449911192 449911997 805 True 1306.0 1306 95.90600 1 806 1 chr5D.!!$R1 805
12 TraesCS4D01G183200 chr3A 101102636 101103440 804 False 1194.0 1194 93.42400 1 806 1 chr3A.!!$F1 805
13 TraesCS4D01G183200 chr2B 641727946 641728742 796 False 1062.0 1062 90.72700 5 801 1 chr2B.!!$F2 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 861 0.030638 CAAGCCAACCTGTTTCGGTG 59.969 55.0 0.0 0.0 37.36 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2803 2917 0.035439 GCGGGAAATCACAGAGGGAA 60.035 55.0 0.0 0.0 0.0 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 1.373590 AAACACGTGTGCCACACCTC 61.374 55.000 24.16 0.00 45.93 3.85
153 154 1.279527 CCTCGCGAGCGTAAACACAA 61.280 55.000 30.49 0.00 40.74 3.33
526 527 2.107041 TTGGACGTCGAGTGCCCATT 62.107 55.000 9.92 0.00 40.82 3.16
573 574 2.108970 GTACGGGAGTTCCTGATCCTT 58.891 52.381 13.84 0.00 45.36 3.36
578 579 3.084786 GGGAGTTCCTGATCCTTGTTTG 58.915 50.000 0.00 0.00 35.80 2.93
801 802 1.685224 CCTAAGTGCCAGCCCTTGA 59.315 57.895 0.00 0.00 0.00 3.02
806 807 2.032528 TGCCAGCCCTTGAAGACG 59.967 61.111 0.00 0.00 0.00 4.18
807 808 2.747855 GCCAGCCCTTGAAGACGG 60.748 66.667 0.00 0.00 0.00 4.79
808 809 3.068881 CCAGCCCTTGAAGACGGA 58.931 61.111 0.00 0.00 0.00 4.69
809 810 1.078848 CCAGCCCTTGAAGACGGAG 60.079 63.158 0.00 0.00 0.00 4.63
810 811 1.078848 CAGCCCTTGAAGACGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
811 812 2.436824 GCCCTTGAAGACGGAGGC 60.437 66.667 0.00 0.00 0.00 4.70
812 813 2.269241 CCCTTGAAGACGGAGGCC 59.731 66.667 0.00 0.00 0.00 5.19
813 814 2.592993 CCCTTGAAGACGGAGGCCA 61.593 63.158 5.01 0.00 0.00 5.36
814 815 1.374947 CCTTGAAGACGGAGGCCAA 59.625 57.895 5.01 0.00 0.00 4.52
815 816 0.035056 CCTTGAAGACGGAGGCCAAT 60.035 55.000 5.01 0.00 0.00 3.16
816 817 1.089920 CTTGAAGACGGAGGCCAATG 58.910 55.000 5.01 0.00 0.00 2.82
817 818 0.960364 TTGAAGACGGAGGCCAATGC 60.960 55.000 5.01 0.00 0.00 3.56
836 837 2.787473 CCTAGTGGCATGGAGTTCAA 57.213 50.000 0.00 0.00 0.00 2.69
837 838 3.287867 CCTAGTGGCATGGAGTTCAAT 57.712 47.619 0.00 0.00 0.00 2.57
838 839 3.209410 CCTAGTGGCATGGAGTTCAATC 58.791 50.000 0.00 0.00 0.00 2.67
839 840 3.118112 CCTAGTGGCATGGAGTTCAATCT 60.118 47.826 0.00 0.00 0.00 2.40
840 841 2.719739 AGTGGCATGGAGTTCAATCTG 58.280 47.619 0.00 0.00 0.00 2.90
841 842 1.133790 GTGGCATGGAGTTCAATCTGC 59.866 52.381 0.00 0.00 0.00 4.26
842 843 1.272037 TGGCATGGAGTTCAATCTGCA 60.272 47.619 0.00 0.00 39.82 4.41
843 844 1.820519 GGCATGGAGTTCAATCTGCAA 59.179 47.619 0.00 0.00 39.06 4.08
844 845 2.159282 GGCATGGAGTTCAATCTGCAAG 60.159 50.000 0.00 0.00 39.06 4.01
845 846 2.734492 GCATGGAGTTCAATCTGCAAGC 60.734 50.000 0.00 0.63 41.36 4.01
846 847 1.538047 TGGAGTTCAATCTGCAAGCC 58.462 50.000 0.00 0.00 33.16 4.35
847 848 1.202915 TGGAGTTCAATCTGCAAGCCA 60.203 47.619 0.00 0.00 33.16 4.75
848 849 1.888512 GGAGTTCAATCTGCAAGCCAA 59.111 47.619 0.00 0.00 0.00 4.52
849 850 2.352127 GGAGTTCAATCTGCAAGCCAAC 60.352 50.000 0.00 0.00 0.00 3.77
850 851 1.615392 AGTTCAATCTGCAAGCCAACC 59.385 47.619 0.00 0.00 0.00 3.77
851 852 1.615392 GTTCAATCTGCAAGCCAACCT 59.385 47.619 0.00 0.00 0.00 3.50
852 853 1.250328 TCAATCTGCAAGCCAACCTG 58.750 50.000 0.00 0.00 0.00 4.00
853 854 0.963962 CAATCTGCAAGCCAACCTGT 59.036 50.000 0.00 0.00 0.00 4.00
854 855 1.342174 CAATCTGCAAGCCAACCTGTT 59.658 47.619 0.00 0.00 0.00 3.16
855 856 1.708341 ATCTGCAAGCCAACCTGTTT 58.292 45.000 0.00 0.00 0.00 2.83
856 857 1.032014 TCTGCAAGCCAACCTGTTTC 58.968 50.000 0.00 0.00 0.00 2.78
857 858 0.318107 CTGCAAGCCAACCTGTTTCG 60.318 55.000 0.00 0.00 0.00 3.46
858 859 1.007387 GCAAGCCAACCTGTTTCGG 60.007 57.895 0.00 0.00 0.00 4.30
859 860 1.734388 GCAAGCCAACCTGTTTCGGT 61.734 55.000 0.00 0.00 39.48 4.69
860 861 0.030638 CAAGCCAACCTGTTTCGGTG 59.969 55.000 0.00 0.00 37.36 4.94
861 862 1.106944 AAGCCAACCTGTTTCGGTGG 61.107 55.000 0.00 0.00 37.36 4.61
862 863 1.826487 GCCAACCTGTTTCGGTGGT 60.826 57.895 0.00 0.00 37.36 4.16
863 864 1.792118 GCCAACCTGTTTCGGTGGTC 61.792 60.000 0.00 0.00 37.36 4.02
864 865 0.179029 CCAACCTGTTTCGGTGGTCT 60.179 55.000 0.00 0.00 37.36 3.85
865 866 1.675552 CAACCTGTTTCGGTGGTCTT 58.324 50.000 0.00 0.00 37.36 3.01
866 867 1.333619 CAACCTGTTTCGGTGGTCTTG 59.666 52.381 0.00 0.00 37.36 3.02
867 868 0.179029 ACCTGTTTCGGTGGTCTTGG 60.179 55.000 0.00 0.00 35.52 3.61
868 869 0.889186 CCTGTTTCGGTGGTCTTGGG 60.889 60.000 0.00 0.00 0.00 4.12
869 870 0.889186 CTGTTTCGGTGGTCTTGGGG 60.889 60.000 0.00 0.00 0.00 4.96
870 871 1.149854 GTTTCGGTGGTCTTGGGGT 59.850 57.895 0.00 0.00 0.00 4.95
871 872 1.149627 TTTCGGTGGTCTTGGGGTG 59.850 57.895 0.00 0.00 0.00 4.61
883 884 2.640826 TCTTGGGGTGACGGTTATCTTT 59.359 45.455 0.00 0.00 0.00 2.52
965 966 4.934797 AGGATTTTCTGACATTCTCCCA 57.065 40.909 0.00 0.00 0.00 4.37
1040 1041 0.469331 CAATCAGGCATGGCATCCCT 60.469 55.000 22.64 3.45 0.00 4.20
1053 1054 5.099042 TGGCATCCCTTTTTACTCTACTC 57.901 43.478 0.00 0.00 0.00 2.59
1264 1265 4.467735 CATCGTCGACATACTAGGTGATG 58.532 47.826 17.16 12.29 0.00 3.07
1487 1491 4.979197 GGAGCATCTTCGTCAGTATACTTG 59.021 45.833 1.56 0.00 33.73 3.16
1529 1537 3.578716 TGTCGAGATCCTTCTTGTTTCCT 59.421 43.478 0.00 0.00 35.22 3.36
1537 1545 6.714356 AGATCCTTCTTGTTTCCTCTTTTCAG 59.286 38.462 0.00 0.00 0.00 3.02
1658 1669 3.303990 CCATACCGCAGCACATTTCATAC 60.304 47.826 0.00 0.00 0.00 2.39
1659 1670 2.113860 ACCGCAGCACATTTCATACT 57.886 45.000 0.00 0.00 0.00 2.12
1660 1671 2.009774 ACCGCAGCACATTTCATACTC 58.990 47.619 0.00 0.00 0.00 2.59
1661 1672 1.331756 CCGCAGCACATTTCATACTCC 59.668 52.381 0.00 0.00 0.00 3.85
1662 1673 2.283298 CGCAGCACATTTCATACTCCT 58.717 47.619 0.00 0.00 0.00 3.69
1663 1674 3.457234 CGCAGCACATTTCATACTCCTA 58.543 45.455 0.00 0.00 0.00 2.94
1707 1718 4.215399 CCGGCAGTAATTTCTCTTTTGTGA 59.785 41.667 0.00 0.00 0.00 3.58
1708 1719 5.278266 CCGGCAGTAATTTCTCTTTTGTGAA 60.278 40.000 0.00 0.00 0.00 3.18
1709 1720 6.205784 CGGCAGTAATTTCTCTTTTGTGAAA 58.794 36.000 0.00 0.00 43.26 2.69
1710 1721 6.142320 CGGCAGTAATTTCTCTTTTGTGAAAC 59.858 38.462 0.00 0.00 42.35 2.78
1711 1722 6.142320 GGCAGTAATTTCTCTTTTGTGAAACG 59.858 38.462 0.00 0.00 42.35 3.60
1712 1723 6.910433 GCAGTAATTTCTCTTTTGTGAAACGA 59.090 34.615 0.00 0.00 42.35 3.85
1713 1724 7.112148 GCAGTAATTTCTCTTTTGTGAAACGAG 59.888 37.037 0.00 0.00 42.35 4.18
1714 1725 8.122952 CAGTAATTTCTCTTTTGTGAAACGAGT 58.877 33.333 0.00 0.00 42.35 4.18
1715 1726 8.336080 AGTAATTTCTCTTTTGTGAAACGAGTC 58.664 33.333 0.00 0.00 42.35 3.36
1730 1741 1.726892 CGAGTCAAACGACGATTCCGA 60.727 52.381 0.00 0.00 38.51 4.55
1807 1819 5.319140 ACTACAAAACGCAAGGTCTTTTT 57.681 34.783 0.00 0.00 46.39 1.94
2192 2249 3.766691 TACCTTCTGGACGCCCGC 61.767 66.667 0.00 0.00 37.04 6.13
2444 2514 5.509163 GCACGGTACCATAGCCCATATATAG 60.509 48.000 13.54 0.00 0.00 1.31
2498 2599 5.581085 GGAGTTTATATGTGACTCAGCGTTT 59.419 40.000 13.50 0.00 41.15 3.60
2511 2612 2.699910 GCGTTTGCGTTGATCTGTG 58.300 52.632 0.00 0.00 40.81 3.66
2515 2616 2.219903 CGTTTGCGTTGATCTGTGTGTA 59.780 45.455 0.00 0.00 0.00 2.90
2517 2618 4.610456 CGTTTGCGTTGATCTGTGTGTATT 60.610 41.667 0.00 0.00 0.00 1.89
2643 2744 1.735559 GTACGTGTTCTGGGACGCC 60.736 63.158 0.00 0.00 39.22 5.68
2773 2874 5.050295 GCTTAGCTTGGAACCAATCGTATAC 60.050 44.000 6.74 0.00 35.20 1.47
2775 2876 5.864418 AGCTTGGAACCAATCGTATACTA 57.136 39.130 6.74 0.00 35.20 1.82
2802 2916 3.930336 TGTATCTCAGAGGCTGTTGTTG 58.070 45.455 0.00 0.00 32.61 3.33
2803 2917 3.324846 TGTATCTCAGAGGCTGTTGTTGT 59.675 43.478 0.00 0.00 32.61 3.32
2804 2918 3.498774 ATCTCAGAGGCTGTTGTTGTT 57.501 42.857 0.00 0.00 32.61 2.83
2807 2921 0.954452 CAGAGGCTGTTGTTGTTCCC 59.046 55.000 0.00 0.00 0.00 3.97
2810 2924 0.846693 AGGCTGTTGTTGTTCCCTCT 59.153 50.000 0.00 0.00 0.00 3.69
2815 2929 3.480470 CTGTTGTTGTTCCCTCTGTGAT 58.520 45.455 0.00 0.00 0.00 3.06
2823 2937 1.815421 CCCTCTGTGATTTCCCGCG 60.815 63.158 0.00 0.00 0.00 6.46
2832 2946 2.515996 GATTTCCCGCGGAGTGTCCA 62.516 60.000 30.73 2.84 35.91 4.02
2833 2947 2.521958 ATTTCCCGCGGAGTGTCCAG 62.522 60.000 30.73 7.15 35.91 3.86
2836 2950 3.449227 CCGCGGAGTGTCCAGCTA 61.449 66.667 24.07 0.00 35.91 3.32
2837 2951 2.103143 CGCGGAGTGTCCAGCTAG 59.897 66.667 0.00 0.00 35.91 3.42
2838 2952 2.496817 GCGGAGTGTCCAGCTAGG 59.503 66.667 0.00 0.00 35.91 3.02
2839 2953 2.352032 GCGGAGTGTCCAGCTAGGT 61.352 63.158 0.00 0.00 35.91 3.08
2840 2954 1.035932 GCGGAGTGTCCAGCTAGGTA 61.036 60.000 0.00 0.00 35.91 3.08
2841 2955 0.739561 CGGAGTGTCCAGCTAGGTAC 59.260 60.000 0.00 0.00 35.91 3.34
2918 3032 3.551846 TCATCTGCGAGGTGTGTCTATA 58.448 45.455 0.00 0.00 0.00 1.31
2921 3035 4.794278 TCTGCGAGGTGTGTCTATAAAA 57.206 40.909 0.00 0.00 0.00 1.52
2923 3037 5.730550 TCTGCGAGGTGTGTCTATAAAAAT 58.269 37.500 0.00 0.00 0.00 1.82
2925 3039 7.497595 TCTGCGAGGTGTGTCTATAAAAATAT 58.502 34.615 0.00 0.00 0.00 1.28
2926 3040 7.438160 TCTGCGAGGTGTGTCTATAAAAATATG 59.562 37.037 0.00 0.00 0.00 1.78
2927 3041 6.018262 TGCGAGGTGTGTCTATAAAAATATGC 60.018 38.462 0.00 0.00 0.00 3.14
2928 3042 6.565999 GCGAGGTGTGTCTATAAAAATATGCC 60.566 42.308 0.00 0.00 0.00 4.40
2929 3043 6.346598 CGAGGTGTGTCTATAAAAATATGCCG 60.347 42.308 0.00 0.00 0.00 5.69
2930 3044 5.763204 AGGTGTGTCTATAAAAATATGCCGG 59.237 40.000 0.00 0.00 0.00 6.13
2931 3045 5.048991 GGTGTGTCTATAAAAATATGCCGGG 60.049 44.000 2.18 0.00 0.00 5.73
2932 3046 5.048991 GTGTGTCTATAAAAATATGCCGGGG 60.049 44.000 2.18 0.00 0.00 5.73
2933 3047 4.457949 GTGTCTATAAAAATATGCCGGGGG 59.542 45.833 2.18 0.00 0.00 5.40
2934 3048 4.105057 TGTCTATAAAAATATGCCGGGGGT 59.895 41.667 2.18 0.00 0.00 4.95
2935 3049 4.457949 GTCTATAAAAATATGCCGGGGGTG 59.542 45.833 2.18 0.00 0.00 4.61
2936 3050 1.404843 TAAAAATATGCCGGGGGTGC 58.595 50.000 2.18 0.00 0.00 5.01
2937 3051 0.325203 AAAAATATGCCGGGGGTGCT 60.325 50.000 2.18 0.00 0.00 4.40
2938 3052 0.325203 AAAATATGCCGGGGGTGCTT 60.325 50.000 2.18 0.00 0.00 3.91
2939 3053 1.042559 AAATATGCCGGGGGTGCTTG 61.043 55.000 2.18 0.00 0.00 4.01
2940 3054 4.813235 TATGCCGGGGGTGCTTGC 62.813 66.667 2.18 0.00 0.00 4.01
2948 3062 4.621087 GGGTGCTTGCCCCTTGGT 62.621 66.667 10.55 0.00 42.89 3.67
2949 3063 2.991540 GGTGCTTGCCCCTTGGTC 60.992 66.667 0.00 0.00 0.00 4.02
2950 3064 2.116125 GTGCTTGCCCCTTGGTCT 59.884 61.111 0.00 0.00 0.00 3.85
2951 3065 1.973812 GTGCTTGCCCCTTGGTCTC 60.974 63.158 0.00 0.00 0.00 3.36
2952 3066 2.747855 GCTTGCCCCTTGGTCTCG 60.748 66.667 0.00 0.00 0.00 4.04
2953 3067 2.750350 CTTGCCCCTTGGTCTCGT 59.250 61.111 0.00 0.00 0.00 4.18
2954 3068 1.073199 CTTGCCCCTTGGTCTCGTT 59.927 57.895 0.00 0.00 0.00 3.85
2955 3069 0.537371 CTTGCCCCTTGGTCTCGTTT 60.537 55.000 0.00 0.00 0.00 3.60
2956 3070 0.106419 TTGCCCCTTGGTCTCGTTTT 60.106 50.000 0.00 0.00 0.00 2.43
3022 3136 5.445806 CGTTGATGATTGCAGTATTGTCGAA 60.446 40.000 0.00 0.00 0.00 3.71
3028 3142 4.725556 TTGCAGTATTGTCGAACTCAAC 57.274 40.909 0.00 0.00 0.00 3.18
3041 3155 4.035909 TCGAACTCAACGGATAATCGATCA 59.964 41.667 0.00 0.00 36.12 2.92
3051 3165 2.485266 TAATCGATCACGTGCGACAT 57.515 45.000 18.34 13.35 39.56 3.06
3061 3175 2.860136 CACGTGCGACATATTGTGATCT 59.140 45.455 0.82 0.00 0.00 2.75
3064 3178 3.060940 CGTGCGACATATTGTGATCTGAC 60.061 47.826 0.00 0.00 0.00 3.51
3110 3224 1.433879 CGGCGTTTCCAACCAAACA 59.566 52.632 0.00 0.00 36.23 2.83
3115 3229 2.601314 GCGTTTCCAACCAAACAGAAAC 59.399 45.455 0.00 0.00 42.87 2.78
3139 3253 8.371770 ACTGCAGTTCTTTTTGTTTTGTTTTA 57.628 26.923 15.25 0.00 0.00 1.52
3140 3254 8.998377 ACTGCAGTTCTTTTTGTTTTGTTTTAT 58.002 25.926 15.25 0.00 0.00 1.40
3141 3255 9.824534 CTGCAGTTCTTTTTGTTTTGTTTTATT 57.175 25.926 5.25 0.00 0.00 1.40
3204 3318 4.024048 AGAGTAGCCGTTGATGTTTTTGTG 60.024 41.667 0.00 0.00 0.00 3.33
3206 3320 3.518634 AGCCGTTGATGTTTTTGTGTT 57.481 38.095 0.00 0.00 0.00 3.32
3207 3321 3.855858 AGCCGTTGATGTTTTTGTGTTT 58.144 36.364 0.00 0.00 0.00 2.83
3208 3322 4.249661 AGCCGTTGATGTTTTTGTGTTTT 58.750 34.783 0.00 0.00 0.00 2.43
3209 3323 4.092675 AGCCGTTGATGTTTTTGTGTTTTG 59.907 37.500 0.00 0.00 0.00 2.44
3210 3324 4.143009 GCCGTTGATGTTTTTGTGTTTTGT 60.143 37.500 0.00 0.00 0.00 2.83
3211 3325 5.062308 GCCGTTGATGTTTTTGTGTTTTGTA 59.938 36.000 0.00 0.00 0.00 2.41
3212 3326 6.462647 CCGTTGATGTTTTTGTGTTTTGTAC 58.537 36.000 0.00 0.00 0.00 2.90
3213 3327 6.309251 CCGTTGATGTTTTTGTGTTTTGTACT 59.691 34.615 0.00 0.00 0.00 2.73
3214 3328 7.485277 CCGTTGATGTTTTTGTGTTTTGTACTA 59.515 33.333 0.00 0.00 0.00 1.82
3215 3329 8.308320 CGTTGATGTTTTTGTGTTTTGTACTAC 58.692 33.333 0.00 0.00 0.00 2.73
3216 3330 9.349145 GTTGATGTTTTTGTGTTTTGTACTACT 57.651 29.630 0.00 0.00 0.00 2.57
3217 3331 8.903570 TGATGTTTTTGTGTTTTGTACTACTG 57.096 30.769 0.00 0.00 0.00 2.74
3218 3332 8.516234 TGATGTTTTTGTGTTTTGTACTACTGT 58.484 29.630 0.00 0.00 0.00 3.55
3219 3333 9.991388 GATGTTTTTGTGTTTTGTACTACTGTA 57.009 29.630 0.00 0.00 0.00 2.74
3316 3470 4.217754 TCCGGAGAAAACAAAAACATCG 57.782 40.909 0.00 0.00 0.00 3.84
3322 3476 7.075741 CGGAGAAAACAAAAACATCGAAGTAT 58.924 34.615 0.00 0.00 0.00 2.12
3344 7396 0.391228 TTCAGTTCGGTGCAGCACTA 59.609 50.000 24.75 11.00 34.40 2.74
3368 7422 9.947669 CTACGCAATTTAGAGTAGTACTGTATT 57.052 33.333 7.76 0.00 37.20 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.593196 CAAGGGAAACACAAGCGAGA 58.407 50.000 0.00 0.00 0.00 4.04
137 138 1.120147 GCATTGTGTTTACGCTCGCG 61.120 55.000 10.06 10.06 46.03 5.87
526 527 2.238144 CTCAGGCCTTGGAAGATGAGAA 59.762 50.000 0.00 0.00 35.11 2.87
573 574 2.422231 GGTGGCTGGTGTGCAAACA 61.422 57.895 9.76 0.00 34.04 2.83
661 662 0.321564 CAGATCACGGTGGGCAAAGA 60.322 55.000 8.50 0.00 0.00 2.52
817 818 2.787473 TTGAACTCCATGCCACTAGG 57.213 50.000 0.00 0.00 38.23 3.02
818 819 3.875727 CAGATTGAACTCCATGCCACTAG 59.124 47.826 0.00 0.00 0.00 2.57
819 820 3.877559 CAGATTGAACTCCATGCCACTA 58.122 45.455 0.00 0.00 0.00 2.74
820 821 2.719739 CAGATTGAACTCCATGCCACT 58.280 47.619 0.00 0.00 0.00 4.00
821 822 1.133790 GCAGATTGAACTCCATGCCAC 59.866 52.381 0.00 0.00 0.00 5.01
822 823 1.272037 TGCAGATTGAACTCCATGCCA 60.272 47.619 0.00 0.00 32.77 4.92
823 824 1.466856 TGCAGATTGAACTCCATGCC 58.533 50.000 0.00 0.00 32.77 4.40
824 825 2.734492 GCTTGCAGATTGAACTCCATGC 60.734 50.000 0.00 0.00 0.00 4.06
825 826 2.159282 GGCTTGCAGATTGAACTCCATG 60.159 50.000 0.00 0.00 0.00 3.66
826 827 2.097825 GGCTTGCAGATTGAACTCCAT 58.902 47.619 0.00 0.00 0.00 3.41
827 828 1.202915 TGGCTTGCAGATTGAACTCCA 60.203 47.619 0.00 0.00 0.00 3.86
828 829 1.538047 TGGCTTGCAGATTGAACTCC 58.462 50.000 0.00 0.00 0.00 3.85
829 830 2.352127 GGTTGGCTTGCAGATTGAACTC 60.352 50.000 0.00 0.00 0.00 3.01
830 831 1.615392 GGTTGGCTTGCAGATTGAACT 59.385 47.619 0.00 0.00 0.00 3.01
831 832 1.615392 AGGTTGGCTTGCAGATTGAAC 59.385 47.619 0.00 0.00 0.00 3.18
832 833 1.614903 CAGGTTGGCTTGCAGATTGAA 59.385 47.619 0.00 0.00 0.00 2.69
833 834 1.250328 CAGGTTGGCTTGCAGATTGA 58.750 50.000 0.00 0.00 0.00 2.57
834 835 0.963962 ACAGGTTGGCTTGCAGATTG 59.036 50.000 0.00 0.00 0.00 2.67
835 836 1.708341 AACAGGTTGGCTTGCAGATT 58.292 45.000 0.00 0.00 0.00 2.40
836 837 1.615392 GAAACAGGTTGGCTTGCAGAT 59.385 47.619 0.00 0.00 0.00 2.90
837 838 1.032014 GAAACAGGTTGGCTTGCAGA 58.968 50.000 0.00 0.00 0.00 4.26
838 839 0.318107 CGAAACAGGTTGGCTTGCAG 60.318 55.000 0.00 0.00 0.00 4.41
839 840 1.732917 CGAAACAGGTTGGCTTGCA 59.267 52.632 0.00 0.00 0.00 4.08
840 841 1.007387 CCGAAACAGGTTGGCTTGC 60.007 57.895 0.00 0.00 0.00 4.01
841 842 0.030638 CACCGAAACAGGTTGGCTTG 59.969 55.000 0.00 0.00 43.00 4.01
842 843 1.106944 CCACCGAAACAGGTTGGCTT 61.107 55.000 0.00 0.00 43.00 4.35
843 844 1.528309 CCACCGAAACAGGTTGGCT 60.528 57.895 0.00 0.00 43.00 4.75
844 845 1.792118 GACCACCGAAACAGGTTGGC 61.792 60.000 0.00 0.00 43.00 4.52
845 846 0.179029 AGACCACCGAAACAGGTTGG 60.179 55.000 0.00 0.00 43.00 3.77
846 847 1.333619 CAAGACCACCGAAACAGGTTG 59.666 52.381 0.00 0.00 43.00 3.77
847 848 1.675552 CAAGACCACCGAAACAGGTT 58.324 50.000 0.00 0.00 43.00 3.50
849 850 0.889186 CCCAAGACCACCGAAACAGG 60.889 60.000 0.00 0.00 37.30 4.00
850 851 0.889186 CCCCAAGACCACCGAAACAG 60.889 60.000 0.00 0.00 0.00 3.16
851 852 1.149627 CCCCAAGACCACCGAAACA 59.850 57.895 0.00 0.00 0.00 2.83
852 853 1.149854 ACCCCAAGACCACCGAAAC 59.850 57.895 0.00 0.00 0.00 2.78
853 854 1.149627 CACCCCAAGACCACCGAAA 59.850 57.895 0.00 0.00 0.00 3.46
854 855 1.766864 TCACCCCAAGACCACCGAA 60.767 57.895 0.00 0.00 0.00 4.30
855 856 2.122769 TCACCCCAAGACCACCGA 60.123 61.111 0.00 0.00 0.00 4.69
856 857 2.032071 GTCACCCCAAGACCACCG 59.968 66.667 0.00 0.00 0.00 4.94
857 858 2.032071 CGTCACCCCAAGACCACC 59.968 66.667 0.00 0.00 32.41 4.61
858 859 2.032071 CCGTCACCCCAAGACCAC 59.968 66.667 0.00 0.00 32.41 4.16
859 860 0.763604 TAACCGTCACCCCAAGACCA 60.764 55.000 0.00 0.00 32.41 4.02
860 861 0.616891 ATAACCGTCACCCCAAGACC 59.383 55.000 0.00 0.00 32.41 3.85
861 862 1.553704 AGATAACCGTCACCCCAAGAC 59.446 52.381 0.00 0.00 0.00 3.01
862 863 1.946984 AGATAACCGTCACCCCAAGA 58.053 50.000 0.00 0.00 0.00 3.02
863 864 2.781681 AAGATAACCGTCACCCCAAG 57.218 50.000 0.00 0.00 0.00 3.61
864 865 2.290450 GGAAAGATAACCGTCACCCCAA 60.290 50.000 0.00 0.00 0.00 4.12
865 866 1.279846 GGAAAGATAACCGTCACCCCA 59.720 52.381 0.00 0.00 0.00 4.96
866 867 1.558294 AGGAAAGATAACCGTCACCCC 59.442 52.381 0.00 0.00 0.00 4.95
867 868 2.737679 CGAGGAAAGATAACCGTCACCC 60.738 54.545 0.00 0.00 0.00 4.61
868 869 2.537401 CGAGGAAAGATAACCGTCACC 58.463 52.381 0.00 0.00 0.00 4.02
869 870 1.925185 GCGAGGAAAGATAACCGTCAC 59.075 52.381 0.00 0.00 0.00 3.67
870 871 1.134907 GGCGAGGAAAGATAACCGTCA 60.135 52.381 0.00 0.00 0.00 4.35
871 872 1.134907 TGGCGAGGAAAGATAACCGTC 60.135 52.381 0.00 0.00 0.00 4.79
883 884 0.464373 GCAATTGAGGATGGCGAGGA 60.464 55.000 10.34 0.00 0.00 3.71
952 953 3.370104 ACTAGGAGTGGGAGAATGTCAG 58.630 50.000 0.00 0.00 0.00 3.51
960 961 1.816183 CGCTAGGACTAGGAGTGGGAG 60.816 61.905 8.33 0.00 33.87 4.30
965 966 1.281287 TGTCACGCTAGGACTAGGAGT 59.719 52.381 8.33 0.00 36.26 3.85
1101 1102 1.626654 CGCCGAAGACGAATGTTGCT 61.627 55.000 0.00 0.00 42.66 3.91
1264 1265 7.538678 ACAGTAAAATTCAGATGCGAAATGTTC 59.461 33.333 0.00 0.00 0.00 3.18
1328 1332 0.554305 TGCCCTGAGATCATGCCAAT 59.446 50.000 0.00 0.00 0.00 3.16
1335 1339 1.767088 CCATCTCTTGCCCTGAGATCA 59.233 52.381 9.35 0.00 46.07 2.92
1339 1343 1.530771 CCCCATCTCTTGCCCTGAG 59.469 63.158 0.00 0.00 0.00 3.35
1487 1491 2.721090 CACAAAAAGCGAGCAGTTTAGC 59.279 45.455 0.00 0.00 0.00 3.09
1529 1537 1.879380 CGGGACATGTTGCTGAAAAGA 59.121 47.619 0.00 0.00 0.00 2.52
1537 1545 1.423845 CTTACGCGGGACATGTTGC 59.576 57.895 12.47 4.12 0.00 4.17
1641 1652 1.331756 GGAGTATGAAATGTGCTGCGG 59.668 52.381 0.00 0.00 0.00 5.69
1659 1670 9.010029 GGAACTGAAAATTTACATCAACTAGGA 57.990 33.333 0.00 0.00 0.00 2.94
1660 1671 7.962918 CGGAACTGAAAATTTACATCAACTAGG 59.037 37.037 0.00 0.00 0.00 3.02
1661 1672 7.962918 CCGGAACTGAAAATTTACATCAACTAG 59.037 37.037 0.00 0.00 0.00 2.57
1662 1673 7.574217 GCCGGAACTGAAAATTTACATCAACTA 60.574 37.037 5.05 0.00 0.00 2.24
1663 1674 6.677913 CCGGAACTGAAAATTTACATCAACT 58.322 36.000 0.00 0.00 0.00 3.16
1707 1718 2.473984 GGAATCGTCGTTTGACTCGTTT 59.526 45.455 0.00 0.00 43.21 3.60
1708 1719 2.056577 GGAATCGTCGTTTGACTCGTT 58.943 47.619 0.00 0.00 43.21 3.85
1709 1720 1.694639 GGAATCGTCGTTTGACTCGT 58.305 50.000 0.00 0.00 43.21 4.18
1710 1721 0.633733 CGGAATCGTCGTTTGACTCG 59.366 55.000 0.00 0.00 43.21 4.18
1711 1722 1.647702 GTCGGAATCGTCGTTTGACTC 59.352 52.381 0.00 0.00 43.21 3.36
1712 1723 1.001048 TGTCGGAATCGTCGTTTGACT 60.001 47.619 0.00 0.00 43.21 3.41
1713 1724 1.385743 CTGTCGGAATCGTCGTTTGAC 59.614 52.381 0.00 0.00 41.91 3.18
1714 1725 1.667756 CCTGTCGGAATCGTCGTTTGA 60.668 52.381 0.00 0.00 37.69 2.69
1715 1726 0.713883 CCTGTCGGAATCGTCGTTTG 59.286 55.000 0.00 0.00 37.69 2.93
1730 1741 7.571919 ACTCATTTCAGACATGATTATCCTGT 58.428 34.615 0.00 2.87 34.73 4.00
1741 1752 7.505585 TGGGAACTAAAAACTCATTTCAGACAT 59.494 33.333 0.00 0.00 0.00 3.06
1742 1753 6.831353 TGGGAACTAAAAACTCATTTCAGACA 59.169 34.615 0.00 0.00 0.00 3.41
1747 1758 8.523658 AGCTTATGGGAACTAAAAACTCATTTC 58.476 33.333 0.00 0.00 0.00 2.17
1754 1765 5.644977 AGCAGCTTATGGGAACTAAAAAC 57.355 39.130 0.00 0.00 0.00 2.43
1761 1772 1.474077 CCACAAGCAGCTTATGGGAAC 59.526 52.381 23.13 0.00 34.69 3.62
1807 1819 7.201574 CCAAATTTCACGATTTACCACTCGATA 60.202 37.037 0.00 0.00 38.24 2.92
2192 2249 0.790207 CGTTCACCACCACGATCTTG 59.210 55.000 0.00 0.00 38.76 3.02
2274 2343 3.057337 CTGGTTCGGGAACTCGGT 58.943 61.111 11.02 0.00 40.94 4.69
2400 2469 1.920574 CGACTTGTAGTTGGCGATGAG 59.079 52.381 0.00 0.00 0.00 2.90
2444 2514 3.066342 CCATGCTTGATGACTTGATGTCC 59.934 47.826 0.22 0.00 44.75 4.02
2492 2593 0.235665 CACAGATCAACGCAAACGCT 59.764 50.000 0.00 0.00 45.53 5.07
2498 2599 3.812609 ACAAATACACACAGATCAACGCA 59.187 39.130 0.00 0.00 0.00 5.24
2511 2612 3.930848 CCTCGAACCCTACACAAATACAC 59.069 47.826 0.00 0.00 0.00 2.90
2515 2616 2.290071 CCACCTCGAACCCTACACAAAT 60.290 50.000 0.00 0.00 0.00 2.32
2517 2618 0.682852 CCACCTCGAACCCTACACAA 59.317 55.000 0.00 0.00 0.00 3.33
2643 2744 4.814294 GCGTCGCTGGGGTGGTAG 62.814 72.222 10.68 0.00 0.00 3.18
2706 2807 1.681793 ACGTTGACAGGGGAGATATCG 59.318 52.381 0.00 0.00 0.00 2.92
2773 2874 5.825679 ACAGCCTCTGAGATACAGTAAGTAG 59.174 44.000 6.17 0.00 45.86 2.57
2775 2876 4.605183 ACAGCCTCTGAGATACAGTAAGT 58.395 43.478 6.17 0.00 45.86 2.24
2802 2916 1.739067 CGGGAAATCACAGAGGGAAC 58.261 55.000 0.00 0.00 0.00 3.62
2803 2917 0.035439 GCGGGAAATCACAGAGGGAA 60.035 55.000 0.00 0.00 0.00 3.97
2804 2918 1.602237 GCGGGAAATCACAGAGGGA 59.398 57.895 0.00 0.00 0.00 4.20
2807 2921 0.807667 CTCCGCGGGAAATCACAGAG 60.808 60.000 27.83 7.08 0.00 3.35
2810 2924 1.375396 CACTCCGCGGGAAATCACA 60.375 57.895 27.83 1.15 0.00 3.58
2815 2929 3.234630 CTGGACACTCCGCGGGAAA 62.235 63.158 27.83 4.76 40.17 3.13
2823 2937 2.146920 AGTACCTAGCTGGACACTCC 57.853 55.000 0.00 0.00 39.71 3.85
2832 2946 5.513267 CCAAGAACTTCCAAAGTACCTAGCT 60.513 44.000 0.00 0.00 41.91 3.32
2833 2947 4.695928 CCAAGAACTTCCAAAGTACCTAGC 59.304 45.833 0.00 0.00 41.91 3.42
2834 2948 5.866207 ACCAAGAACTTCCAAAGTACCTAG 58.134 41.667 0.00 0.00 41.91 3.02
2836 2950 4.445879 GGACCAAGAACTTCCAAAGTACCT 60.446 45.833 0.00 0.00 41.91 3.08
2837 2951 3.819337 GGACCAAGAACTTCCAAAGTACC 59.181 47.826 0.00 0.00 41.91 3.34
2838 2952 4.715713 AGGACCAAGAACTTCCAAAGTAC 58.284 43.478 0.00 0.00 41.91 2.73
2839 2953 6.697641 ATAGGACCAAGAACTTCCAAAGTA 57.302 37.500 0.00 0.00 41.91 2.24
2840 2954 3.953542 AGGACCAAGAACTTCCAAAGT 57.046 42.857 0.00 0.00 45.46 2.66
2841 2955 6.265422 ACAAATAGGACCAAGAACTTCCAAAG 59.735 38.462 0.00 0.00 0.00 2.77
2918 3032 0.325203 AGCACCCCCGGCATATTTTT 60.325 50.000 0.00 0.00 0.00 1.94
2921 3035 1.455587 CAAGCACCCCCGGCATATT 60.456 57.895 0.00 0.00 0.00 1.28
2923 3037 4.813235 GCAAGCACCCCCGGCATA 62.813 66.667 0.00 0.00 0.00 3.14
2932 3046 2.991540 GACCAAGGGGCAAGCACC 60.992 66.667 4.86 4.86 40.57 5.01
2933 3047 1.973812 GAGACCAAGGGGCAAGCAC 60.974 63.158 0.00 0.00 37.90 4.40
2934 3048 2.436109 GAGACCAAGGGGCAAGCA 59.564 61.111 0.00 0.00 37.90 3.91
2935 3049 2.747855 CGAGACCAAGGGGCAAGC 60.748 66.667 0.00 0.00 37.90 4.01
2936 3050 0.537371 AAACGAGACCAAGGGGCAAG 60.537 55.000 0.00 0.00 37.90 4.01
2937 3051 0.106419 AAAACGAGACCAAGGGGCAA 60.106 50.000 0.00 0.00 37.90 4.52
2938 3052 0.106419 AAAAACGAGACCAAGGGGCA 60.106 50.000 0.00 0.00 37.90 5.36
2939 3053 2.728397 AAAAACGAGACCAAGGGGC 58.272 52.632 0.00 0.00 37.90 5.80
3022 3136 3.066342 ACGTGATCGATTATCCGTTGAGT 59.934 43.478 0.00 0.00 37.89 3.41
3028 3142 0.702924 CGCACGTGATCGATTATCCG 59.297 55.000 22.23 5.02 40.62 4.18
3041 3155 2.860136 CAGATCACAATATGTCGCACGT 59.140 45.455 0.00 0.00 0.00 4.49
3064 3178 2.464189 CGAAACCGCACGTCTTCG 59.536 61.111 8.64 8.64 43.34 3.79
3110 3224 6.705825 ACAAAACAAAAAGAACTGCAGTTTCT 59.294 30.769 31.58 24.59 38.56 2.52
3115 3229 9.824534 AATAAAACAAAACAAAAAGAACTGCAG 57.175 25.926 13.48 13.48 0.00 4.41
3139 3253 8.611757 CAATTTTTCTTTCCCTCAAAACGAAAT 58.388 29.630 0.00 0.00 0.00 2.17
3140 3254 7.413548 GCAATTTTTCTTTCCCTCAAAACGAAA 60.414 33.333 0.00 0.00 0.00 3.46
3141 3255 6.036626 GCAATTTTTCTTTCCCTCAAAACGAA 59.963 34.615 0.00 0.00 0.00 3.85
3142 3256 5.522097 GCAATTTTTCTTTCCCTCAAAACGA 59.478 36.000 0.00 0.00 0.00 3.85
3143 3257 5.293079 TGCAATTTTTCTTTCCCTCAAAACG 59.707 36.000 0.00 0.00 0.00 3.60
3204 3318 8.680903 TGCTACTCCTATACAGTAGTACAAAAC 58.319 37.037 2.52 0.00 43.69 2.43
3206 3320 7.013083 GCTGCTACTCCTATACAGTAGTACAAA 59.987 40.741 2.52 0.00 43.69 2.83
3207 3321 6.485984 GCTGCTACTCCTATACAGTAGTACAA 59.514 42.308 2.52 0.00 43.69 2.41
3208 3322 5.996513 GCTGCTACTCCTATACAGTAGTACA 59.003 44.000 2.52 5.68 43.69 2.90
3209 3323 5.120519 CGCTGCTACTCCTATACAGTAGTAC 59.879 48.000 12.67 0.00 43.69 2.73
3210 3324 5.011431 TCGCTGCTACTCCTATACAGTAGTA 59.989 44.000 12.67 9.07 43.69 1.82
3211 3325 4.066490 CGCTGCTACTCCTATACAGTAGT 58.934 47.826 12.67 0.00 43.69 2.73
3212 3326 4.316645 TCGCTGCTACTCCTATACAGTAG 58.683 47.826 0.00 8.80 44.35 2.57
3213 3327 4.347360 TCGCTGCTACTCCTATACAGTA 57.653 45.455 0.00 0.00 0.00 2.74
3214 3328 3.210232 TCGCTGCTACTCCTATACAGT 57.790 47.619 0.00 0.00 0.00 3.55
3215 3329 4.291783 GTTTCGCTGCTACTCCTATACAG 58.708 47.826 0.00 0.00 0.00 2.74
3216 3330 3.067742 GGTTTCGCTGCTACTCCTATACA 59.932 47.826 0.00 0.00 0.00 2.29
3217 3331 3.067742 TGGTTTCGCTGCTACTCCTATAC 59.932 47.826 0.00 0.00 0.00 1.47
3218 3332 3.293337 TGGTTTCGCTGCTACTCCTATA 58.707 45.455 0.00 0.00 0.00 1.31
3219 3333 2.108168 TGGTTTCGCTGCTACTCCTAT 58.892 47.619 0.00 0.00 0.00 2.57
3322 3476 0.179059 TGCTGCACCGAACTGAAGAA 60.179 50.000 0.00 0.00 0.00 2.52
3344 7396 9.298774 GAAATACAGTACTACTCTAAATTGCGT 57.701 33.333 0.00 0.00 0.00 5.24
3361 7415 8.293699 ACCTTTTGACTTTTGAGAAATACAGT 57.706 30.769 0.00 0.00 0.00 3.55
3362 7416 7.587757 CGACCTTTTGACTTTTGAGAAATACAG 59.412 37.037 0.00 0.00 0.00 2.74
3363 7417 7.414436 CGACCTTTTGACTTTTGAGAAATACA 58.586 34.615 0.00 0.00 0.00 2.29
3364 7418 6.359883 GCGACCTTTTGACTTTTGAGAAATAC 59.640 38.462 0.00 0.00 0.00 1.89
3365 7419 6.262273 AGCGACCTTTTGACTTTTGAGAAATA 59.738 34.615 0.00 0.00 0.00 1.40
3366 7420 5.067805 AGCGACCTTTTGACTTTTGAGAAAT 59.932 36.000 0.00 0.00 0.00 2.17
3367 7421 4.398044 AGCGACCTTTTGACTTTTGAGAAA 59.602 37.500 0.00 0.00 0.00 2.52
3368 7422 3.945285 AGCGACCTTTTGACTTTTGAGAA 59.055 39.130 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.