Multiple sequence alignment - TraesCS4D01G182100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G182100 chr4D 100.000 8404 0 0 1 8404 318284283 318292686 0.000000e+00 15520.0
1 TraesCS4D01G182100 chr4D 98.628 583 8 0 5546 6128 234710989 234711571 0.000000e+00 1033.0
2 TraesCS4D01G182100 chr4D 88.153 574 22 19 6369 6897 234722159 234722731 7.110000e-180 641.0
3 TraesCS4D01G182100 chr4D 92.883 281 15 2 6124 6399 234721961 234722241 3.650000e-108 403.0
4 TraesCS4D01G182100 chr4D 93.162 117 6 2 5162 5276 39411322 39411438 4.030000e-38 171.0
5 TraesCS4D01G182100 chr4D 97.297 74 2 0 6824 6897 118378691 118378764 8.860000e-25 126.0
6 TraesCS4D01G182100 chr4B 91.678 4266 186 47 949 5165 395605071 395609216 0.000000e+00 5755.0
7 TraesCS4D01G182100 chr4B 93.183 1511 73 17 6898 8404 395609423 395610907 0.000000e+00 2193.0
8 TraesCS4D01G182100 chr4B 88.480 816 61 7 5546 6329 618078391 618079205 0.000000e+00 955.0
9 TraesCS4D01G182100 chr4B 94.087 575 18 7 375 948 395604011 395604570 0.000000e+00 859.0
10 TraesCS4D01G182100 chr4B 92.878 337 15 2 1 328 395603683 395604019 1.640000e-131 481.0
11 TraesCS4D01G182100 chr4B 84.123 422 25 8 6518 6897 618079241 618079662 3.710000e-98 370.0
12 TraesCS4D01G182100 chr4B 91.057 123 9 2 5156 5276 660476356 660476234 1.880000e-36 165.0
13 TraesCS4D01G182100 chr4B 80.000 195 35 4 8211 8402 499910671 499910478 3.160000e-29 141.0
14 TraesCS4D01G182100 chr4A 92.382 2468 65 31 320 2717 156141354 156138940 0.000000e+00 3402.0
15 TraesCS4D01G182100 chr4A 94.641 933 31 4 6898 7827 156136011 156135095 0.000000e+00 1428.0
16 TraesCS4D01G182100 chr4A 95.419 895 34 6 3692 4582 156138069 156137178 0.000000e+00 1419.0
17 TraesCS4D01G182100 chr4A 95.507 601 23 4 4568 5165 156137162 156136563 0.000000e+00 957.0
18 TraesCS4D01G182100 chr4A 91.883 579 15 16 3120 3691 156138820 156138267 0.000000e+00 780.0
19 TraesCS4D01G182100 chr4A 92.836 335 14 2 1 326 156142405 156142072 2.120000e-130 477.0
20 TraesCS4D01G182100 chr4A 87.749 351 31 7 8054 8402 156134313 156133973 4.730000e-107 399.0
21 TraesCS4D01G182100 chr4A 86.667 240 24 4 5308 5545 156136236 156136003 8.370000e-65 259.0
22 TraesCS4D01G182100 chr4A 95.890 146 6 0 7855 8000 156134906 156134761 3.920000e-58 237.0
23 TraesCS4D01G182100 chr4A 77.295 414 81 10 7996 8402 60677207 60676800 1.820000e-56 231.0
24 TraesCS4D01G182100 chr4A 93.333 135 9 0 7996 8130 156134457 156134323 5.140000e-47 200.0
25 TraesCS4D01G182100 chr1D 95.771 1395 16 3 5546 6897 122550699 122552093 0.000000e+00 2209.0
26 TraesCS4D01G182100 chr1D 80.870 230 26 6 6684 6897 442423569 442423796 1.880000e-36 165.0
27 TraesCS4D01G182100 chr1D 77.108 249 40 6 6664 6897 442420966 442420720 2.460000e-25 128.0
28 TraesCS4D01G182100 chr1D 98.333 60 1 0 2716 2775 225704785 225704844 1.150000e-18 106.0
29 TraesCS4D01G182100 chr2D 95.197 1395 25 5 5545 6897 574897906 574899300 0.000000e+00 2167.0
30 TraesCS4D01G182100 chr2D 93.500 200 10 3 6320 6518 599285379 599285576 2.290000e-75 294.0
31 TraesCS4D01G182100 chr2D 94.937 79 3 1 6824 6902 87261509 87261432 1.150000e-23 122.0
32 TraesCS4D01G182100 chr2D 94.937 79 3 1 6824 6902 543300010 543300087 1.150000e-23 122.0
33 TraesCS4D01G182100 chr2D 96.825 63 2 0 2714 2776 352947833 352947895 1.150000e-18 106.0
34 TraesCS4D01G182100 chr2D 96.774 62 2 0 2714 2775 299891552 299891613 4.150000e-18 104.0
35 TraesCS4D01G182100 chr7D 93.629 1397 43 20 5546 6898 223859881 223858487 0.000000e+00 2045.0
36 TraesCS4D01G182100 chr7D 85.749 828 71 12 5546 6329 626252542 626253366 0.000000e+00 832.0
37 TraesCS4D01G182100 chr7D 94.819 193 9 1 6326 6517 539824597 539824405 4.930000e-77 300.0
38 TraesCS4D01G182100 chr7D 90.972 144 8 2 6520 6662 626253403 626253542 1.110000e-43 189.0
39 TraesCS4D01G182100 chr2B 88.355 833 52 20 6110 6897 236799233 236800065 0.000000e+00 959.0
40 TraesCS4D01G182100 chr2B 93.237 414 25 3 5547 5957 236798797 236799210 2.590000e-169 606.0
41 TraesCS4D01G182100 chr2B 83.228 316 51 1 5546 5859 771036476 771036161 1.070000e-73 289.0
42 TraesCS4D01G182100 chr2B 91.339 127 7 4 5153 5276 756408430 756408305 4.030000e-38 171.0
43 TraesCS4D01G182100 chr2B 88.596 114 13 0 2812 2925 66994757 66994644 1.140000e-28 139.0
44 TraesCS4D01G182100 chr2B 80.556 180 31 4 8179 8356 137713 137890 1.470000e-27 135.0
45 TraesCS4D01G182100 chr2B 95.161 62 2 1 2714 2775 437125132 437125072 6.940000e-16 97.1
46 TraesCS4D01G182100 chr6A 85.141 673 51 20 5682 6329 24846307 24846955 1.980000e-180 643.0
47 TraesCS4D01G182100 chr6A 88.933 253 16 8 6656 6897 24847200 24847451 1.370000e-77 302.0
48 TraesCS4D01G182100 chr6A 98.750 80 1 0 6520 6599 24846993 24847072 8.790000e-30 143.0
49 TraesCS4D01G182100 chr7A 79.809 733 98 32 5546 6232 681989997 681989269 9.800000e-134 488.0
50 TraesCS4D01G182100 chr7A 86.364 132 16 2 2812 2942 420845332 420845202 8.790000e-30 143.0
51 TraesCS4D01G182100 chr5B 78.412 403 45 25 6526 6897 445190197 445189806 3.050000e-54 224.0
52 TraesCS4D01G182100 chr5B 82.906 234 31 5 8176 8402 611702227 611702458 1.430000e-47 202.0
53 TraesCS4D01G182100 chr5B 83.523 176 23 4 6158 6329 445190414 445190241 8.730000e-35 159.0
54 TraesCS4D01G182100 chr5B 90.541 74 6 1 2702 2775 411971852 411971924 6.940000e-16 97.1
55 TraesCS4D01G182100 chr3A 79.811 317 34 18 6520 6820 8131217 8131519 3.980000e-48 204.0
56 TraesCS4D01G182100 chrUn 82.222 225 37 2 8180 8401 36489423 36489199 3.100000e-44 191.0
57 TraesCS4D01G182100 chrUn 79.128 321 34 14 6523 6819 229553054 229552743 3.100000e-44 191.0
58 TraesCS4D01G182100 chr3B 81.944 216 36 3 8190 8402 11951458 11951673 6.700000e-41 180.0
59 TraesCS4D01G182100 chr3B 91.736 121 8 2 5161 5279 694025133 694025013 5.220000e-37 167.0
60 TraesCS4D01G182100 chr3B 91.304 115 10 0 2812 2926 66820073 66820187 3.140000e-34 158.0
61 TraesCS4D01G182100 chr3B 90.541 74 6 1 2702 2775 80587228 80587300 6.940000e-16 97.1
62 TraesCS4D01G182100 chr2A 75.176 427 81 17 7992 8404 31954159 31954574 2.410000e-40 178.0
63 TraesCS4D01G182100 chr2A 95.062 81 3 1 6824 6903 677395949 677396029 8.860000e-25 126.0
64 TraesCS4D01G182100 chr5D 91.935 124 8 2 5156 5277 97831719 97831842 1.120000e-38 172.0
65 TraesCS4D01G182100 chr5D 92.562 121 7 2 5158 5276 441256318 441256438 1.120000e-38 172.0
66 TraesCS4D01G182100 chr5D 91.339 127 9 2 5160 5284 565900787 565900913 1.120000e-38 172.0
67 TraesCS4D01G182100 chr5D 100.000 28 0 0 4597 4624 347432522 347432549 1.500000e-02 52.8
68 TraesCS4D01G182100 chr6B 92.437 119 7 2 5160 5276 213674984 213675102 1.450000e-37 169.0
69 TraesCS4D01G182100 chr6B 89.231 130 12 2 5161 5288 377824214 377824085 2.430000e-35 161.0
70 TraesCS4D01G182100 chr7B 87.597 129 14 2 2812 2940 618334290 618334164 1.890000e-31 148.0
71 TraesCS4D01G182100 chr7B 87.597 129 14 2 2812 2940 618761073 618761199 1.890000e-31 148.0
72 TraesCS4D01G182100 chr7B 87.500 128 14 2 2813 2940 618850380 618850505 6.800000e-31 147.0
73 TraesCS4D01G182100 chr1B 88.430 121 12 2 2812 2931 142025571 142025690 2.440000e-30 145.0
74 TraesCS4D01G182100 chr1B 86.154 130 17 1 2812 2940 517502305 517502176 1.140000e-28 139.0
75 TraesCS4D01G182100 chr6D 87.200 125 15 1 6383 6507 400444286 400444409 3.160000e-29 141.0
76 TraesCS4D01G182100 chr1A 78.788 231 31 9 6684 6898 549493145 549492917 1.140000e-28 139.0
77 TraesCS4D01G182100 chr3D 93.151 73 3 2 2706 2777 563861152 563861223 1.150000e-18 106.0
78 TraesCS4D01G182100 chr5A 96.774 62 2 0 2716 2777 558675658 558675597 4.150000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G182100 chr4D 318284283 318292686 8403 False 15520.000000 15520 100.000000 1 8404 1 chr4D.!!$F4 8403
1 TraesCS4D01G182100 chr4D 234710989 234711571 582 False 1033.000000 1033 98.628000 5546 6128 1 chr4D.!!$F3 582
2 TraesCS4D01G182100 chr4D 234721961 234722731 770 False 522.000000 641 90.518000 6124 6897 2 chr4D.!!$F5 773
3 TraesCS4D01G182100 chr4B 395603683 395610907 7224 False 2322.000000 5755 92.956500 1 8404 4 chr4B.!!$F1 8403
4 TraesCS4D01G182100 chr4B 618078391 618079662 1271 False 662.500000 955 86.301500 5546 6897 2 chr4B.!!$F2 1351
5 TraesCS4D01G182100 chr4A 156133973 156142405 8432 True 955.800000 3402 92.630700 1 8402 10 chr4A.!!$R2 8401
6 TraesCS4D01G182100 chr1D 122550699 122552093 1394 False 2209.000000 2209 95.771000 5546 6897 1 chr1D.!!$F1 1351
7 TraesCS4D01G182100 chr2D 574897906 574899300 1394 False 2167.000000 2167 95.197000 5545 6897 1 chr2D.!!$F4 1352
8 TraesCS4D01G182100 chr7D 223858487 223859881 1394 True 2045.000000 2045 93.629000 5546 6898 1 chr7D.!!$R1 1352
9 TraesCS4D01G182100 chr7D 626252542 626253542 1000 False 510.500000 832 88.360500 5546 6662 2 chr7D.!!$F1 1116
10 TraesCS4D01G182100 chr2B 236798797 236800065 1268 False 782.500000 959 90.796000 5547 6897 2 chr2B.!!$F2 1350
11 TraesCS4D01G182100 chr6A 24846307 24847451 1144 False 362.666667 643 90.941333 5682 6897 3 chr6A.!!$F1 1215
12 TraesCS4D01G182100 chr7A 681989269 681989997 728 True 488.000000 488 79.809000 5546 6232 1 chr7A.!!$R2 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 2303 0.034756 TGTGTGATCGGTGGGTGAAG 59.965 55.0 0.00 0.00 0.00 3.02 F
2006 3368 0.179020 TGCCAGCTTGCAAGTACAGT 60.179 50.0 26.55 5.10 38.56 3.55 F
2725 4125 0.114364 TGTGCTCACTACTCCCTCCA 59.886 55.0 1.47 0.00 0.00 3.86 F
3250 4659 0.868406 GCCAGTCAAAGTGAACTCGG 59.132 55.0 0.00 0.00 0.00 4.63 F
4739 6389 0.179702 CATGAGCAGGCAGGAGCTTA 59.820 55.0 0.00 0.00 42.04 3.09 F
5177 6829 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.0 0.00 0.00 0.00 4.30 F
6734 8906 0.107066 TGTCCACATAGGCATGCCAG 60.107 55.0 37.18 27.08 38.92 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2385 3777 0.249741 AGTACAAACAAGCCTCGCGT 60.250 50.000 5.77 0.00 0.00 6.01 R
3444 4853 1.190833 TTTACGGGTGGCGGGTAGAA 61.191 55.000 0.00 0.00 0.00 2.10 R
3950 5568 1.217882 ATAGATGCACCGCGCTTAAC 58.782 50.000 5.56 0.00 43.06 2.01 R
5138 6790 1.347707 TGCAAGGCTATATTCCCTCGG 59.652 52.381 0.00 0.00 0.00 4.63 R
6734 8906 2.046507 CCACCTGTCAGGCTGAGC 60.047 66.667 19.38 13.26 39.63 4.26 R
7126 9313 0.686789 TTGAGCTTCTGGTGCTGCTA 59.313 50.000 0.00 0.00 41.30 3.49 R
7638 9828 0.106167 TCCCTGCTACCGCTATCACT 60.106 55.000 0.00 0.00 36.97 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 5.928839 CACATGGATATTTTCCTCGAGGTAG 59.071 44.000 30.17 8.79 45.68 3.18
122 123 8.523658 TCGACTATGGTTATGATCTAATTCCAG 58.476 37.037 0.00 0.00 0.00 3.86
124 125 9.429359 GACTATGGTTATGATCTAATTCCAGTG 57.571 37.037 0.00 0.00 0.00 3.66
331 341 3.626930 TGGTGTTCCAGCAAGTTTAACT 58.373 40.909 0.00 0.00 38.96 2.24
332 342 4.020543 TGGTGTTCCAGCAAGTTTAACTT 58.979 39.130 4.30 4.30 38.96 2.66
333 343 5.194432 TGGTGTTCCAGCAAGTTTAACTTA 58.806 37.500 10.21 0.00 38.96 2.24
334 344 5.066764 TGGTGTTCCAGCAAGTTTAACTTAC 59.933 40.000 10.21 4.96 38.96 2.34
335 345 5.298527 GGTGTTCCAGCAAGTTTAACTTACT 59.701 40.000 10.21 7.39 36.03 2.24
336 346 6.183360 GGTGTTCCAGCAAGTTTAACTTACTT 60.183 38.462 10.21 0.00 36.03 2.24
337 347 7.255569 GTGTTCCAGCAAGTTTAACTTACTTT 58.744 34.615 10.21 0.00 36.03 2.66
338 348 7.758076 GTGTTCCAGCAAGTTTAACTTACTTTT 59.242 33.333 10.21 0.00 36.03 2.27
339 349 8.958506 TGTTCCAGCAAGTTTAACTTACTTTTA 58.041 29.630 10.21 0.00 36.03 1.52
340 350 9.791820 GTTCCAGCAAGTTTAACTTACTTTTAA 57.208 29.630 10.21 2.09 36.03 1.52
352 362 9.986833 TTAACTTACTTTTAAAAACGTCTGACC 57.013 29.630 1.66 0.00 0.00 4.02
353 363 6.708676 ACTTACTTTTAAAAACGTCTGACCG 58.291 36.000 1.66 0.35 0.00 4.79
354 364 4.541085 ACTTTTAAAAACGTCTGACCGG 57.459 40.909 0.00 0.00 0.00 5.28
355 365 4.190772 ACTTTTAAAAACGTCTGACCGGA 58.809 39.130 9.46 0.00 0.00 5.14
356 366 4.271776 ACTTTTAAAAACGTCTGACCGGAG 59.728 41.667 9.46 0.00 0.00 4.63
357 367 3.731652 TTAAAAACGTCTGACCGGAGA 57.268 42.857 9.46 0.00 0.00 3.71
358 368 2.607631 AAAAACGTCTGACCGGAGAA 57.392 45.000 9.46 0.00 0.00 2.87
359 369 2.607631 AAAACGTCTGACCGGAGAAA 57.392 45.000 9.46 0.00 0.00 2.52
360 370 2.607631 AAACGTCTGACCGGAGAAAA 57.392 45.000 9.46 0.00 0.00 2.29
361 371 2.150397 AACGTCTGACCGGAGAAAAG 57.850 50.000 9.46 0.00 0.00 2.27
362 372 0.317479 ACGTCTGACCGGAGAAAAGG 59.683 55.000 9.46 0.00 0.00 3.11
363 373 0.317479 CGTCTGACCGGAGAAAAGGT 59.683 55.000 9.46 0.00 44.64 3.50
364 374 1.270147 CGTCTGACCGGAGAAAAGGTT 60.270 52.381 9.46 0.00 41.51 3.50
365 375 2.805657 CGTCTGACCGGAGAAAAGGTTT 60.806 50.000 9.46 0.00 41.51 3.27
366 376 2.548480 GTCTGACCGGAGAAAAGGTTTG 59.452 50.000 9.46 0.00 41.51 2.93
367 377 2.436542 TCTGACCGGAGAAAAGGTTTGA 59.563 45.455 9.46 0.00 41.51 2.69
368 378 2.548480 CTGACCGGAGAAAAGGTTTGAC 59.452 50.000 9.46 0.00 41.51 3.18
369 379 1.878088 GACCGGAGAAAAGGTTTGACC 59.122 52.381 9.46 0.00 41.51 4.02
370 380 0.872388 CCGGAGAAAAGGTTTGACCG 59.128 55.000 0.00 0.00 44.90 4.79
371 381 1.541670 CCGGAGAAAAGGTTTGACCGA 60.542 52.381 0.00 0.00 44.90 4.69
372 382 2.215196 CGGAGAAAAGGTTTGACCGAA 58.785 47.619 0.00 0.00 44.90 4.30
373 383 2.032290 CGGAGAAAAGGTTTGACCGAAC 60.032 50.000 0.00 0.00 44.90 3.95
409 1207 7.746703 ACCCCATTTCTTAAGCTATAAGGTAG 58.253 38.462 12.67 0.00 0.00 3.18
471 1271 2.432874 TGTTTTTCCTCTCCTGTCGACA 59.567 45.455 18.88 18.88 0.00 4.35
482 1283 2.031069 TCCTGTCGACAGAGAAAAGACG 60.031 50.000 40.21 22.83 46.59 4.18
526 1327 2.165030 TCTTGAATCCCCTTACGTCGAC 59.835 50.000 5.18 5.18 0.00 4.20
645 1453 1.069227 GCTGGAACTCGCGAACAAAAT 60.069 47.619 11.33 0.00 0.00 1.82
756 1567 3.877508 ACTTTGGTTGAAGAAGAAGACCG 59.122 43.478 0.00 0.00 33.07 4.79
765 1576 1.003349 AGAAGAAGACCGGACGAGAGA 59.997 52.381 9.46 0.00 0.00 3.10
822 1633 2.559668 CGCCTCCCCTATAAATACGACA 59.440 50.000 0.00 0.00 0.00 4.35
981 2302 0.250124 GTGTGTGATCGGTGGGTGAA 60.250 55.000 0.00 0.00 0.00 3.18
982 2303 0.034756 TGTGTGATCGGTGGGTGAAG 59.965 55.000 0.00 0.00 0.00 3.02
983 2304 0.673644 GTGTGATCGGTGGGTGAAGG 60.674 60.000 0.00 0.00 0.00 3.46
984 2305 1.745489 GTGATCGGTGGGTGAAGGC 60.745 63.158 0.00 0.00 0.00 4.35
985 2306 2.511600 GATCGGTGGGTGAAGGCG 60.512 66.667 0.00 0.00 0.00 5.52
986 2307 3.000819 ATCGGTGGGTGAAGGCGA 61.001 61.111 0.00 0.00 0.00 5.54
987 2308 2.907897 GATCGGTGGGTGAAGGCGAG 62.908 65.000 0.00 0.00 0.00 5.03
988 2309 4.760047 CGGTGGGTGAAGGCGAGG 62.760 72.222 0.00 0.00 0.00 4.63
989 2310 3.319198 GGTGGGTGAAGGCGAGGA 61.319 66.667 0.00 0.00 0.00 3.71
990 2311 2.266055 GTGGGTGAAGGCGAGGAG 59.734 66.667 0.00 0.00 0.00 3.69
991 2312 2.119611 TGGGTGAAGGCGAGGAGA 59.880 61.111 0.00 0.00 0.00 3.71
992 2313 1.984570 TGGGTGAAGGCGAGGAGAG 60.985 63.158 0.00 0.00 0.00 3.20
993 2314 2.185608 GGTGAAGGCGAGGAGAGC 59.814 66.667 0.00 0.00 0.00 4.09
994 2315 2.202676 GTGAAGGCGAGGAGAGCG 60.203 66.667 0.00 0.00 35.00 5.03
995 2316 2.361230 TGAAGGCGAGGAGAGCGA 60.361 61.111 0.00 0.00 35.00 4.93
996 2317 2.410687 TGAAGGCGAGGAGAGCGAG 61.411 63.158 0.00 0.00 35.00 5.03
997 2318 2.044848 AAGGCGAGGAGAGCGAGA 60.045 61.111 0.00 0.00 35.00 4.04
1193 2517 4.778415 CGACGTCCACGCCTCCAG 62.778 72.222 10.58 0.00 44.43 3.86
1200 2524 3.775654 CACGCCTCCAGGGACCTC 61.776 72.222 0.00 0.00 37.23 3.85
1684 3023 2.308570 AGTGAAGAGAGGCAGAGAGAGA 59.691 50.000 0.00 0.00 0.00 3.10
1811 3153 0.321996 ACCTCTTTGACCGCCTTCTC 59.678 55.000 0.00 0.00 0.00 2.87
1895 3257 2.094234 GTGTTTGGGAGAGAGAGAGAGC 60.094 54.545 0.00 0.00 0.00 4.09
1929 3291 6.475596 TGAAACAATTAACCGGGGTAAAAA 57.524 33.333 8.90 0.00 0.00 1.94
1939 3301 4.951254 ACCGGGGTAAAAAGATTTGTTTG 58.049 39.130 6.32 0.00 0.00 2.93
2002 3364 3.191162 CAGTTTATGCCAGCTTGCAAGTA 59.809 43.478 26.55 8.13 45.84 2.24
2003 3365 3.191371 AGTTTATGCCAGCTTGCAAGTAC 59.809 43.478 26.55 13.61 45.84 2.73
2004 3366 2.488204 TATGCCAGCTTGCAAGTACA 57.512 45.000 26.55 18.82 45.84 2.90
2005 3367 1.171308 ATGCCAGCTTGCAAGTACAG 58.829 50.000 26.55 14.40 45.84 2.74
2006 3368 0.179020 TGCCAGCTTGCAAGTACAGT 60.179 50.000 26.55 5.10 38.56 3.55
2007 3369 1.071542 TGCCAGCTTGCAAGTACAGTA 59.928 47.619 26.55 10.75 38.56 2.74
2173 3542 4.405116 TTTTTGTTTTCATCTGCCAGCT 57.595 36.364 0.00 0.00 0.00 4.24
2177 3546 2.816087 TGTTTTCATCTGCCAGCTTCTC 59.184 45.455 0.00 0.00 0.00 2.87
2268 3649 1.150081 AGCAAGCAAGGACACAGCT 59.850 52.632 0.00 0.00 41.03 4.24
2269 3650 0.397941 AGCAAGCAAGGACACAGCTA 59.602 50.000 0.00 0.00 37.70 3.32
2270 3651 1.202806 AGCAAGCAAGGACACAGCTAA 60.203 47.619 0.00 0.00 37.70 3.09
2385 3777 9.565090 ACACTCGGTTGTACAAGTAGATATATA 57.435 33.333 8.98 0.00 0.00 0.86
2386 3778 9.823098 CACTCGGTTGTACAAGTAGATATATAC 57.177 37.037 8.98 0.00 0.00 1.47
2387 3779 8.715998 ACTCGGTTGTACAAGTAGATATATACG 58.284 37.037 8.98 0.51 0.00 3.06
2388 3780 7.521529 TCGGTTGTACAAGTAGATATATACGC 58.478 38.462 8.98 0.00 0.00 4.42
2389 3781 6.463890 CGGTTGTACAAGTAGATATATACGCG 59.536 42.308 8.98 3.53 0.00 6.01
2390 3782 7.521529 GGTTGTACAAGTAGATATATACGCGA 58.478 38.462 15.93 0.00 0.00 5.87
2391 3783 7.691463 GGTTGTACAAGTAGATATATACGCGAG 59.309 40.741 15.93 0.00 0.00 5.03
2392 3784 7.299787 TGTACAAGTAGATATATACGCGAGG 57.700 40.000 15.93 0.00 0.00 4.63
2393 3785 5.232610 ACAAGTAGATATATACGCGAGGC 57.767 43.478 15.93 0.00 0.00 4.70
2394 3786 4.942483 ACAAGTAGATATATACGCGAGGCT 59.058 41.667 15.93 2.30 0.00 4.58
2395 3787 5.415077 ACAAGTAGATATATACGCGAGGCTT 59.585 40.000 15.93 0.00 0.00 4.35
2686 4086 5.779922 TGCTATATAGGTCCAATGAACGAC 58.220 41.667 11.72 0.00 31.67 4.34
2725 4125 0.114364 TGTGCTCACTACTCCCTCCA 59.886 55.000 1.47 0.00 0.00 3.86
2803 4203 3.453717 GGGGGTCTAACCTCGTTTTCTAT 59.546 47.826 0.00 0.00 40.60 1.98
2804 4204 4.080695 GGGGGTCTAACCTCGTTTTCTATT 60.081 45.833 0.00 0.00 40.60 1.73
2837 4237 6.515272 AAATACGGAGCAAAATGACTGAAT 57.485 33.333 0.00 0.00 0.00 2.57
2886 4286 7.268199 AGATCCGTATGTAGTTCGTATTGAA 57.732 36.000 0.00 0.00 0.00 2.69
2990 4393 9.194972 AGAATCAGAACAGATGTAGTGAATCTA 57.805 33.333 10.93 0.00 32.65 1.98
3044 4447 9.182214 CAGGGTAGTACTCTTACTAAATGTACA 57.818 37.037 0.00 0.00 41.55 2.90
3197 4606 9.492973 GGGCTTGCAATCATTTAAAATGTATAT 57.507 29.630 0.00 0.00 0.00 0.86
3250 4659 0.868406 GCCAGTCAAAGTGAACTCGG 59.132 55.000 0.00 0.00 0.00 4.63
3362 4771 4.096532 GCAGATTGCTAAACTTAACTCCCC 59.903 45.833 0.00 0.00 40.96 4.81
3401 4810 7.809546 TTGTTATTGTGGACACTTCAATACA 57.190 32.000 3.91 0.00 34.96 2.29
3425 4834 6.463995 TTGAGCAACCTTCTTTTATGTTGT 57.536 33.333 0.00 0.00 40.08 3.32
3444 4853 6.163476 TGTTGTATACTCGCTGTCAAAATCT 58.837 36.000 4.17 0.00 0.00 2.40
3448 4857 7.768240 TGTATACTCGCTGTCAAAATCTTCTA 58.232 34.615 4.17 0.00 0.00 2.10
3612 5023 7.037438 AGCACTATGTTGCATTTAGGAAATTG 58.963 34.615 3.48 0.00 45.62 2.32
3679 5090 2.294791 CCTATGTTGTCTAGAGGAGCCG 59.705 54.545 0.00 0.00 0.00 5.52
3817 5433 9.486497 TTGTTAACCAACATCTACGTAATACAA 57.514 29.630 2.48 0.00 44.01 2.41
3844 5460 8.615878 AACATGCTGTCTATTTGTAAGTAACA 57.384 30.769 0.00 0.00 35.88 2.41
3907 5523 1.275291 CTTGACGTGTCCATGGTAGGT 59.725 52.381 12.58 13.48 0.00 3.08
3950 5568 1.795768 TTTGCTCAGTTAGGTGCGAG 58.204 50.000 0.00 0.00 0.00 5.03
4010 5629 5.627499 TGACAGTTATGCATGTTTTCTCC 57.373 39.130 10.16 0.00 0.00 3.71
4029 5648 9.947669 TTTTCTCCATGCATTTATTTGTTTTTG 57.052 25.926 0.00 0.00 0.00 2.44
4069 5688 7.117236 CACTTCGAACTAACTTGGCTTGTATTA 59.883 37.037 0.00 0.00 0.00 0.98
4186 5805 3.316308 GTGTGTCCTGTCTTTTCAGCATT 59.684 43.478 0.00 0.00 34.47 3.56
4205 5824 9.461312 TCAGCATTACATTTGGTAGAAACTTAT 57.539 29.630 0.00 0.00 32.49 1.73
4469 6089 7.599998 ACATAAATTCAAGTCTTTTGTGCCATC 59.400 33.333 0.00 0.00 0.00 3.51
4570 6190 7.413219 CCATTGTCAACAATTGGAATTATGTGC 60.413 37.037 10.83 0.00 43.48 4.57
4739 6389 0.179702 CATGAGCAGGCAGGAGCTTA 59.820 55.000 0.00 0.00 42.04 3.09
4760 6410 1.722034 AGCTTCACTGAGGAGGTTCA 58.278 50.000 0.00 0.00 0.00 3.18
4775 6425 8.383175 TGAGGAGGTTCATGTTTATAACTTCTT 58.617 33.333 6.38 0.22 31.86 2.52
4822 6472 2.872245 GTGCTTACAACTGTCTGCTTGA 59.128 45.455 7.98 0.00 0.00 3.02
4926 6576 7.228706 AGGTGTCACAAGGTAATTTTCAACTAG 59.771 37.037 5.12 0.00 0.00 2.57
4929 6579 8.208224 TGTCACAAGGTAATTTTCAACTAGAGA 58.792 33.333 0.00 0.00 0.00 3.10
4931 6581 9.793259 TCACAAGGTAATTTTCAACTAGAGAAT 57.207 29.630 0.00 0.00 32.84 2.40
4961 6611 3.942539 TTGATCAATATGTTCCGCGTG 57.057 42.857 3.38 0.00 0.00 5.34
4966 6616 2.927477 TCAATATGTTCCGCGTGAGTTC 59.073 45.455 4.92 0.00 0.00 3.01
5105 6755 1.067212 CGGTAAGCGCCTCTAGTTGAT 59.933 52.381 2.29 0.00 0.00 2.57
5117 6767 6.418226 CGCCTCTAGTTGATTAACTGTGATAC 59.582 42.308 12.85 5.70 46.28 2.24
5164 6816 4.599241 AGGGAATATAGCCTTGCATGTACT 59.401 41.667 0.00 0.00 0.00 2.73
5165 6817 4.938226 GGGAATATAGCCTTGCATGTACTC 59.062 45.833 0.00 0.00 0.00 2.59
5166 6818 4.938226 GGAATATAGCCTTGCATGTACTCC 59.062 45.833 0.00 0.00 0.00 3.85
5167 6819 2.938956 ATAGCCTTGCATGTACTCCC 57.061 50.000 0.00 0.00 0.00 4.30
5168 6820 1.879575 TAGCCTTGCATGTACTCCCT 58.120 50.000 0.00 0.00 0.00 4.20
5169 6821 0.543749 AGCCTTGCATGTACTCCCTC 59.456 55.000 0.00 0.00 0.00 4.30
5170 6822 0.464554 GCCTTGCATGTACTCCCTCC 60.465 60.000 0.00 0.00 0.00 4.30
5171 6823 0.179073 CCTTGCATGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
5172 6824 0.537188 CTTGCATGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
5173 6825 0.535335 TTGCATGTACTCCCTCCGTC 59.465 55.000 0.00 0.00 0.00 4.79
5174 6826 1.327690 TGCATGTACTCCCTCCGTCC 61.328 60.000 0.00 0.00 0.00 4.79
5175 6827 1.734137 CATGTACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
5176 6828 0.750546 CATGTACTCCCTCCGTCCGA 60.751 60.000 0.00 0.00 0.00 4.55
5177 6829 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
5178 6830 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
5179 6831 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
5180 6832 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
5181 6833 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5182 6834 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5183 6835 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5184 6836 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5185 6837 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5186 6838 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5187 6839 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5188 6840 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
5189 6841 3.581755 TCCGTCCGAAAATACTTGTCAG 58.418 45.455 0.00 0.00 0.00 3.51
5190 6842 3.256383 TCCGTCCGAAAATACTTGTCAGA 59.744 43.478 0.00 0.00 0.00 3.27
5191 6843 3.612860 CCGTCCGAAAATACTTGTCAGAG 59.387 47.826 0.00 0.00 0.00 3.35
5192 6844 4.482386 CGTCCGAAAATACTTGTCAGAGA 58.518 43.478 0.00 0.00 0.00 3.10
5193 6845 4.921515 CGTCCGAAAATACTTGTCAGAGAA 59.078 41.667 0.00 0.00 0.00 2.87
5194 6846 5.404366 CGTCCGAAAATACTTGTCAGAGAAA 59.596 40.000 0.00 0.00 0.00 2.52
5195 6847 6.090898 CGTCCGAAAATACTTGTCAGAGAAAT 59.909 38.462 0.00 0.00 0.00 2.17
5196 6848 7.237173 GTCCGAAAATACTTGTCAGAGAAATG 58.763 38.462 0.00 0.00 0.00 2.32
5197 6849 7.117812 GTCCGAAAATACTTGTCAGAGAAATGA 59.882 37.037 0.00 0.00 0.00 2.57
5198 6850 7.659799 TCCGAAAATACTTGTCAGAGAAATGAA 59.340 33.333 0.00 0.00 0.00 2.57
5199 6851 8.454106 CCGAAAATACTTGTCAGAGAAATGAAT 58.546 33.333 0.00 0.00 0.00 2.57
5207 6859 9.918630 ACTTGTCAGAGAAATGAATAAAAATGG 57.081 29.630 0.00 0.00 0.00 3.16
5250 6902 8.718158 ATGTCTAGATACATCCATTTCTCTGA 57.282 34.615 0.00 0.00 35.08 3.27
5251 6903 7.946207 TGTCTAGATACATCCATTTCTCTGAC 58.054 38.462 0.00 0.00 0.00 3.51
5252 6904 7.561356 TGTCTAGATACATCCATTTCTCTGACA 59.439 37.037 0.00 0.00 33.48 3.58
5253 6905 8.417106 GTCTAGATACATCCATTTCTCTGACAA 58.583 37.037 0.00 0.00 0.00 3.18
5254 6906 8.637099 TCTAGATACATCCATTTCTCTGACAAG 58.363 37.037 0.00 0.00 0.00 3.16
5255 6907 7.192852 AGATACATCCATTTCTCTGACAAGT 57.807 36.000 0.00 0.00 0.00 3.16
5256 6908 8.311395 AGATACATCCATTTCTCTGACAAGTA 57.689 34.615 0.00 0.00 0.00 2.24
5257 6909 8.932610 AGATACATCCATTTCTCTGACAAGTAT 58.067 33.333 0.00 0.00 0.00 2.12
5258 6910 9.553064 GATACATCCATTTCTCTGACAAGTATT 57.447 33.333 0.00 0.00 0.00 1.89
5259 6911 9.911788 ATACATCCATTTCTCTGACAAGTATTT 57.088 29.630 0.00 0.00 0.00 1.40
5260 6912 8.273780 ACATCCATTTCTCTGACAAGTATTTC 57.726 34.615 0.00 0.00 0.00 2.17
5261 6913 7.337942 ACATCCATTTCTCTGACAAGTATTTCC 59.662 37.037 0.00 0.00 0.00 3.13
5262 6914 5.874810 TCCATTTCTCTGACAAGTATTTCCG 59.125 40.000 0.00 0.00 0.00 4.30
5263 6915 5.643777 CCATTTCTCTGACAAGTATTTCCGT 59.356 40.000 0.00 0.00 0.00 4.69
5264 6916 6.816640 CCATTTCTCTGACAAGTATTTCCGTA 59.183 38.462 0.00 0.00 0.00 4.02
5265 6917 7.201530 CCATTTCTCTGACAAGTATTTCCGTAC 60.202 40.741 0.00 0.00 0.00 3.67
5266 6918 4.978186 TCTCTGACAAGTATTTCCGTACG 58.022 43.478 8.69 8.69 0.00 3.67
5267 6919 4.100707 TCTGACAAGTATTTCCGTACGG 57.899 45.455 28.66 28.66 0.00 4.02
5268 6920 3.758023 TCTGACAAGTATTTCCGTACGGA 59.242 43.478 32.61 32.61 43.52 4.69
5269 6921 4.100707 TGACAAGTATTTCCGTACGGAG 57.899 45.455 33.67 23.26 46.06 4.63
5270 6922 3.119388 TGACAAGTATTTCCGTACGGAGG 60.119 47.826 33.67 20.29 46.06 4.30
5271 6923 2.167075 ACAAGTATTTCCGTACGGAGGG 59.833 50.000 33.67 20.89 46.06 4.30
5272 6924 2.428171 CAAGTATTTCCGTACGGAGGGA 59.572 50.000 33.67 24.13 46.06 4.20
5273 6925 2.305009 AGTATTTCCGTACGGAGGGAG 58.695 52.381 33.67 8.83 46.06 4.30
5279 6931 0.453390 CCGTACGGAGGGAGTACAAC 59.547 60.000 30.64 0.00 43.24 3.32
5280 6932 1.457346 CGTACGGAGGGAGTACAACT 58.543 55.000 7.57 0.00 43.24 3.16
5317 7263 3.521727 ACATGGGGTCTATGGTCCTATC 58.478 50.000 0.00 0.00 0.00 2.08
5321 7267 3.051341 TGGGGTCTATGGTCCTATCAACT 60.051 47.826 0.00 0.00 0.00 3.16
5323 7269 4.527427 GGGGTCTATGGTCCTATCAACTAC 59.473 50.000 0.00 0.00 0.00 2.73
5324 7270 5.145564 GGGTCTATGGTCCTATCAACTACA 58.854 45.833 0.00 0.00 0.00 2.74
5325 7271 5.244178 GGGTCTATGGTCCTATCAACTACAG 59.756 48.000 0.00 0.00 0.00 2.74
5326 7272 5.834204 GGTCTATGGTCCTATCAACTACAGT 59.166 44.000 0.00 0.00 0.00 3.55
5327 7273 7.002879 GGTCTATGGTCCTATCAACTACAGTA 58.997 42.308 0.00 0.00 0.00 2.74
5328 7274 7.670559 GGTCTATGGTCCTATCAACTACAGTAT 59.329 40.741 0.00 0.00 0.00 2.12
5333 7279 8.786826 TGGTCCTATCAACTACAGTATTTTTG 57.213 34.615 0.00 0.00 0.00 2.44
5355 7301 6.716934 TGATGAACAGAGAGTAAGATACCC 57.283 41.667 0.00 0.00 0.00 3.69
5362 7308 5.780793 ACAGAGAGTAAGATACCCTTGTGTT 59.219 40.000 0.00 0.00 36.34 3.32
5369 7315 8.375493 AGTAAGATACCCTTGTGTTTCTCATA 57.625 34.615 0.00 0.00 36.34 2.15
5373 7319 8.012957 AGATACCCTTGTGTTTCTCATACTAG 57.987 38.462 0.00 0.00 0.00 2.57
5385 7331 9.031537 TGTTTCTCATACTAGGACATGAACTTA 57.968 33.333 0.00 0.00 31.04 2.24
5402 7348 9.130312 CATGAACTTAAGATCTAATACTACCGC 57.870 37.037 10.09 0.00 0.00 5.68
5419 7365 4.745837 ACCGCTAGTATTGATACGAGTC 57.254 45.455 11.28 5.12 38.00 3.36
5420 7366 4.387598 ACCGCTAGTATTGATACGAGTCT 58.612 43.478 11.28 0.00 38.00 3.24
5421 7367 4.820716 ACCGCTAGTATTGATACGAGTCTT 59.179 41.667 11.28 0.00 38.00 3.01
5424 7370 6.360148 CCGCTAGTATTGATACGAGTCTTTTC 59.640 42.308 11.28 0.00 38.00 2.29
5425 7371 7.133513 CGCTAGTATTGATACGAGTCTTTTCT 58.866 38.462 11.28 0.00 38.00 2.52
5433 7379 8.547967 TTGATACGAGTCTTTTCTAAATTGCT 57.452 30.769 0.00 0.00 0.00 3.91
5458 7405 0.892755 ATGGTCGCCGTCAAGAGTTA 59.107 50.000 0.00 0.00 0.00 2.24
5470 7417 5.408604 CCGTCAAGAGTTAGTTGCAGTTATT 59.591 40.000 0.00 0.00 0.00 1.40
5471 7418 6.073222 CCGTCAAGAGTTAGTTGCAGTTATTT 60.073 38.462 0.00 0.00 0.00 1.40
5536 7483 4.282957 TCTTCTGCTCTGTTCTTCTGTGAT 59.717 41.667 0.00 0.00 0.00 3.06
5537 7484 3.922910 TCTGCTCTGTTCTTCTGTGATG 58.077 45.455 0.00 0.00 0.00 3.07
5538 7485 2.415857 CTGCTCTGTTCTTCTGTGATGC 59.584 50.000 0.00 0.00 0.00 3.91
5539 7486 2.224354 TGCTCTGTTCTTCTGTGATGCA 60.224 45.455 0.00 0.00 0.00 3.96
5540 7487 3.008330 GCTCTGTTCTTCTGTGATGCAT 58.992 45.455 0.00 0.00 0.00 3.96
5541 7488 4.186926 GCTCTGTTCTTCTGTGATGCATA 58.813 43.478 0.00 0.00 0.00 3.14
5542 7489 4.033817 GCTCTGTTCTTCTGTGATGCATAC 59.966 45.833 0.00 0.00 0.00 2.39
5543 7490 4.507710 TCTGTTCTTCTGTGATGCATACC 58.492 43.478 0.00 0.00 0.00 2.73
6170 8180 2.528708 CGGGATAGGAGGAGGCCT 59.471 66.667 3.86 3.86 42.15 5.19
6734 8906 0.107066 TGTCCACATAGGCATGCCAG 60.107 55.000 37.18 27.08 38.92 4.85
6980 9167 0.389166 CAGCGACGGAAGAAGAAGCT 60.389 55.000 0.00 0.00 0.00 3.74
7094 9281 0.811616 GCAGCGATCTTCCGGTCAAT 60.812 55.000 0.00 0.00 38.28 2.57
7126 9313 2.596631 CAGCCACAAGCCAGCAGT 60.597 61.111 0.00 0.00 45.47 4.40
7142 9332 0.036577 CAGTAGCAGCACCAGAAGCT 60.037 55.000 0.00 0.00 44.62 3.74
7500 9690 2.031683 CGGAGGTGATATTTTGCCGTTC 59.968 50.000 0.00 0.00 33.14 3.95
7583 9773 4.021104 TCCAGTTGTCCTCTTCTATGTGTG 60.021 45.833 0.00 0.00 0.00 3.82
7593 9783 8.475639 GTCCTCTTCTATGTGTGAAGGTTATTA 58.524 37.037 0.00 0.00 40.73 0.98
7731 9921 5.316987 CAGTTCCTTGAAGAGGTTTATGGT 58.683 41.667 0.00 0.00 46.39 3.55
7763 9953 9.136323 TCAGAATGACATGCTAAGTTATCTAGA 57.864 33.333 0.00 0.00 42.56 2.43
7805 9995 1.507140 ACAAGGAGTGGACAAGTGGA 58.493 50.000 0.00 0.00 0.00 4.02
7880 10231 2.158813 TCTGTTCCCTTCACAGTGTTCC 60.159 50.000 0.00 0.00 42.12 3.62
7900 10251 5.934935 TCCGTCATTCTTCTTACCAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
8045 10704 9.621629 ACCTTCATTCAAATCGGTTATATGTAA 57.378 29.630 0.00 0.00 0.00 2.41
8090 10749 1.017387 GCCTTCAAAGACCATAGGCG 58.983 55.000 0.00 0.00 41.65 5.52
8154 10901 1.306148 CATCCAGATGCGCAACAGAT 58.694 50.000 17.11 15.53 31.39 2.90
8155 10902 2.486918 CATCCAGATGCGCAACAGATA 58.513 47.619 17.11 0.41 31.39 1.98
8156 10903 1.939974 TCCAGATGCGCAACAGATAC 58.060 50.000 17.11 0.02 0.00 2.24
8157 10904 1.482182 TCCAGATGCGCAACAGATACT 59.518 47.619 17.11 0.00 0.00 2.12
8158 10905 2.693074 TCCAGATGCGCAACAGATACTA 59.307 45.455 17.11 0.00 0.00 1.82
8159 10906 3.132111 TCCAGATGCGCAACAGATACTAA 59.868 43.478 17.11 0.00 0.00 2.24
8160 10907 3.246226 CCAGATGCGCAACAGATACTAAC 59.754 47.826 17.11 0.00 0.00 2.34
8161 10908 4.115516 CAGATGCGCAACAGATACTAACT 58.884 43.478 17.11 0.00 0.00 2.24
8162 10909 4.568359 CAGATGCGCAACAGATACTAACTT 59.432 41.667 17.11 0.00 0.00 2.66
8163 10910 4.568359 AGATGCGCAACAGATACTAACTTG 59.432 41.667 17.11 0.00 0.00 3.16
8164 10911 3.000041 TGCGCAACAGATACTAACTTGG 59.000 45.455 8.16 0.00 0.00 3.61
8165 10912 3.259064 GCGCAACAGATACTAACTTGGA 58.741 45.455 0.30 0.00 0.00 3.53
8166 10913 3.871594 GCGCAACAGATACTAACTTGGAT 59.128 43.478 0.30 0.00 0.00 3.41
8167 10914 4.332819 GCGCAACAGATACTAACTTGGATT 59.667 41.667 0.30 0.00 0.00 3.01
8329 11077 7.358255 TGGAGATACTATTAGGTGGAGGTAT 57.642 40.000 0.00 0.00 0.00 2.73
8330 11078 7.182760 TGGAGATACTATTAGGTGGAGGTATG 58.817 42.308 0.00 0.00 0.00 2.39
8350 11098 6.861055 GGTATGTTAAAGGACACATGTTGTTG 59.139 38.462 0.00 0.00 39.17 3.33
8363 11111 6.035843 CACATGTTGTTGGGCATAATAACTC 58.964 40.000 0.00 0.00 34.15 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.382244 CTTAGAATTGTAAGTTGCACAGTAAAC 57.618 33.333 12.99 0.00 0.00 2.01
326 336 9.986833 GGTCAGACGTTTTTAAAAGTAAGTTAA 57.013 29.630 0.14 0.00 30.86 2.01
327 337 8.327429 CGGTCAGACGTTTTTAAAAGTAAGTTA 58.673 33.333 0.14 0.00 30.86 2.24
328 338 7.182089 CGGTCAGACGTTTTTAAAAGTAAGTT 58.818 34.615 0.14 0.00 30.86 2.66
329 339 6.238184 CCGGTCAGACGTTTTTAAAAGTAAGT 60.238 38.462 0.14 0.00 30.86 2.24
330 340 6.018832 TCCGGTCAGACGTTTTTAAAAGTAAG 60.019 38.462 0.00 0.00 30.86 2.34
331 341 5.814705 TCCGGTCAGACGTTTTTAAAAGTAA 59.185 36.000 0.00 0.00 30.86 2.24
332 342 5.355596 TCCGGTCAGACGTTTTTAAAAGTA 58.644 37.500 0.00 0.00 30.86 2.24
333 343 4.190772 TCCGGTCAGACGTTTTTAAAAGT 58.809 39.130 0.00 0.00 33.36 2.66
334 344 4.508861 TCTCCGGTCAGACGTTTTTAAAAG 59.491 41.667 0.00 0.00 0.00 2.27
335 345 4.440880 TCTCCGGTCAGACGTTTTTAAAA 58.559 39.130 0.00 0.00 0.00 1.52
336 346 4.057406 TCTCCGGTCAGACGTTTTTAAA 57.943 40.909 0.00 0.00 0.00 1.52
337 347 3.731652 TCTCCGGTCAGACGTTTTTAA 57.268 42.857 0.00 0.00 0.00 1.52
338 348 3.731652 TTCTCCGGTCAGACGTTTTTA 57.268 42.857 0.00 0.00 0.00 1.52
339 349 2.607631 TTCTCCGGTCAGACGTTTTT 57.392 45.000 0.00 0.00 0.00 1.94
340 350 2.607631 TTTCTCCGGTCAGACGTTTT 57.392 45.000 0.00 0.00 0.00 2.43
341 351 2.480845 CTTTTCTCCGGTCAGACGTTT 58.519 47.619 0.00 0.00 0.00 3.60
342 352 1.270147 CCTTTTCTCCGGTCAGACGTT 60.270 52.381 0.00 0.00 0.00 3.99
343 353 0.317479 CCTTTTCTCCGGTCAGACGT 59.683 55.000 0.00 0.00 0.00 4.34
344 354 0.317479 ACCTTTTCTCCGGTCAGACG 59.683 55.000 0.00 0.00 0.00 4.18
345 355 2.545537 AACCTTTTCTCCGGTCAGAC 57.454 50.000 0.00 0.00 31.87 3.51
346 356 2.436542 TCAAACCTTTTCTCCGGTCAGA 59.563 45.455 0.00 0.00 31.87 3.27
347 357 2.548480 GTCAAACCTTTTCTCCGGTCAG 59.452 50.000 0.00 0.00 31.87 3.51
348 358 2.567985 GTCAAACCTTTTCTCCGGTCA 58.432 47.619 0.00 0.00 31.87 4.02
349 359 1.878088 GGTCAAACCTTTTCTCCGGTC 59.122 52.381 0.00 0.00 34.73 4.79
350 360 1.812708 CGGTCAAACCTTTTCTCCGGT 60.813 52.381 0.00 0.00 35.66 5.28
351 361 0.872388 CGGTCAAACCTTTTCTCCGG 59.128 55.000 0.00 0.00 35.66 5.14
352 362 1.873698 TCGGTCAAACCTTTTCTCCG 58.126 50.000 0.00 0.00 35.66 4.63
353 363 2.946990 TGTTCGGTCAAACCTTTTCTCC 59.053 45.455 0.00 0.00 35.66 3.71
354 364 3.548214 GCTGTTCGGTCAAACCTTTTCTC 60.548 47.826 0.00 0.00 35.66 2.87
355 365 2.357952 GCTGTTCGGTCAAACCTTTTCT 59.642 45.455 0.00 0.00 35.66 2.52
356 366 2.098443 TGCTGTTCGGTCAAACCTTTTC 59.902 45.455 0.00 0.00 35.66 2.29
357 367 2.096248 TGCTGTTCGGTCAAACCTTTT 58.904 42.857 0.00 0.00 35.66 2.27
358 368 1.757682 TGCTGTTCGGTCAAACCTTT 58.242 45.000 0.00 0.00 35.66 3.11
359 369 1.608590 CATGCTGTTCGGTCAAACCTT 59.391 47.619 0.00 0.00 35.66 3.50
360 370 1.238439 CATGCTGTTCGGTCAAACCT 58.762 50.000 0.00 0.00 35.66 3.50
361 371 0.951558 ACATGCTGTTCGGTCAAACC 59.048 50.000 0.00 0.00 34.05 3.27
362 372 2.774439 AACATGCTGTTCGGTCAAAC 57.226 45.000 0.00 0.00 35.27 2.93
363 373 3.791973 AAAACATGCTGTTCGGTCAAA 57.208 38.095 0.00 0.00 40.14 2.69
364 374 3.003897 GGTAAAACATGCTGTTCGGTCAA 59.996 43.478 0.00 0.00 40.14 3.18
365 375 2.550606 GGTAAAACATGCTGTTCGGTCA 59.449 45.455 0.00 0.00 40.14 4.02
366 376 2.095415 GGGTAAAACATGCTGTTCGGTC 60.095 50.000 0.00 0.00 40.14 4.79
367 377 1.883926 GGGTAAAACATGCTGTTCGGT 59.116 47.619 0.00 0.00 40.14 4.69
368 378 1.201414 GGGGTAAAACATGCTGTTCGG 59.799 52.381 0.00 0.00 40.14 4.30
369 379 1.883275 TGGGGTAAAACATGCTGTTCG 59.117 47.619 0.00 0.00 40.14 3.95
370 380 4.535526 AATGGGGTAAAACATGCTGTTC 57.464 40.909 0.00 0.00 40.14 3.18
371 381 4.592778 AGAAATGGGGTAAAACATGCTGTT 59.407 37.500 0.00 0.00 43.41 3.16
372 382 4.159557 AGAAATGGGGTAAAACATGCTGT 58.840 39.130 0.00 0.00 0.00 4.40
373 383 4.806640 AGAAATGGGGTAAAACATGCTG 57.193 40.909 0.00 0.00 0.00 4.41
387 397 9.930693 CTACCTACCTTATAGCTTAAGAAATGG 57.069 37.037 6.67 2.70 0.00 3.16
409 1207 5.468540 AAAAGGAATGAAAACAGCCTACC 57.531 39.130 0.00 0.00 0.00 3.18
437 1237 3.759618 AGGAAAAACAGTTGGTCGTCAAA 59.240 39.130 0.00 0.00 37.08 2.69
438 1238 3.349022 AGGAAAAACAGTTGGTCGTCAA 58.651 40.909 0.00 0.00 0.00 3.18
439 1239 2.940410 GAGGAAAAACAGTTGGTCGTCA 59.060 45.455 11.61 0.00 0.00 4.35
440 1240 3.203716 AGAGGAAAAACAGTTGGTCGTC 58.796 45.455 9.61 9.61 0.00 4.20
471 1271 0.663568 CGTCCACGCGTCTTTTCTCT 60.664 55.000 9.86 0.00 0.00 3.10
526 1327 5.062558 GCATCAAAATTTCAGAAATGACCCG 59.937 40.000 9.24 0.00 0.00 5.28
645 1453 1.133945 TGCTGTTTTGTCCCTACTGCA 60.134 47.619 0.00 0.00 42.08 4.41
756 1567 1.073768 GCGCACTTCTTCTCTCGTCC 61.074 60.000 0.30 0.00 0.00 4.79
765 1576 2.733593 GACGGTCGCGCACTTCTT 60.734 61.111 8.75 0.00 0.00 2.52
981 2302 2.826738 GTCTCGCTCTCCTCGCCT 60.827 66.667 0.00 0.00 0.00 5.52
982 2303 4.244802 CGTCTCGCTCTCCTCGCC 62.245 72.222 0.00 0.00 0.00 5.54
983 2304 2.539338 ATCGTCTCGCTCTCCTCGC 61.539 63.158 0.00 0.00 0.00 5.03
984 2305 1.278337 CATCGTCTCGCTCTCCTCG 59.722 63.158 0.00 0.00 0.00 4.63
985 2306 0.306533 GACATCGTCTCGCTCTCCTC 59.693 60.000 0.00 0.00 0.00 3.71
986 2307 1.433053 CGACATCGTCTCGCTCTCCT 61.433 60.000 0.00 0.00 34.11 3.69
987 2308 1.010574 CGACATCGTCTCGCTCTCC 60.011 63.158 0.00 0.00 34.11 3.71
988 2309 4.580580 CGACATCGTCTCGCTCTC 57.419 61.111 0.00 0.00 34.11 3.20
1117 2438 2.520741 GAGAGGAGGAGGCGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1118 2439 2.904866 CGAGAGGAGGAGGCGGAG 60.905 72.222 0.00 0.00 0.00 4.63
1273 2600 2.089887 TAGCACGACGTCCTTTGGCA 62.090 55.000 10.58 0.00 0.00 4.92
1684 3023 1.079681 ACGCGACGTCTCTCTCTCT 60.080 57.895 15.93 0.00 33.69 3.10
1811 3153 3.206150 CGAGAGGAAGAAGGAGAGAGAG 58.794 54.545 0.00 0.00 0.00 3.20
1895 3257 2.296692 ATTGTTTCAGCTAGCGCGCG 62.297 55.000 28.44 28.44 42.32 6.86
1929 3291 4.751767 TTTTGTCCAGGCAAACAAATCT 57.248 36.364 11.23 0.00 42.95 2.40
1939 3301 7.027778 AGATTAATCGTATTTTTGTCCAGGC 57.972 36.000 9.78 0.00 0.00 4.85
2002 3364 0.535102 AAAGGCTGCGTGCTTACTGT 60.535 50.000 0.00 0.00 42.39 3.55
2003 3365 0.593128 AAAAGGCTGCGTGCTTACTG 59.407 50.000 0.00 0.00 42.39 2.74
2004 3366 0.593128 CAAAAGGCTGCGTGCTTACT 59.407 50.000 0.00 0.00 42.39 2.24
2005 3367 1.003769 GCAAAAGGCTGCGTGCTTAC 61.004 55.000 9.39 0.00 42.39 2.34
2006 3368 1.285641 GCAAAAGGCTGCGTGCTTA 59.714 52.632 9.39 0.00 42.39 3.09
2007 3369 2.028043 GCAAAAGGCTGCGTGCTT 59.972 55.556 9.39 0.00 42.39 3.91
2173 3542 1.541670 CGAAAACCCCAACCTCGAGAA 60.542 52.381 15.71 0.00 0.00 2.87
2177 3546 1.530323 ATTCGAAAACCCCAACCTCG 58.470 50.000 0.00 0.00 0.00 4.63
2268 3649 3.118261 AGTTGCTGCCTGCTAGCTTATTA 60.118 43.478 17.23 0.00 41.66 0.98
2269 3650 2.019984 GTTGCTGCCTGCTAGCTTATT 58.980 47.619 17.23 0.00 41.66 1.40
2270 3651 1.211457 AGTTGCTGCCTGCTAGCTTAT 59.789 47.619 17.23 0.00 41.66 1.73
2290 3671 1.110518 GCGGGACAAAACTTTGGGGA 61.111 55.000 7.09 0.00 42.34 4.81
2385 3777 0.249741 AGTACAAACAAGCCTCGCGT 60.250 50.000 5.77 0.00 0.00 6.01
2386 3778 0.438830 GAGTACAAACAAGCCTCGCG 59.561 55.000 0.00 0.00 0.00 5.87
2387 3779 1.194772 GTGAGTACAAACAAGCCTCGC 59.805 52.381 0.00 0.00 0.00 5.03
2388 3780 2.479837 TGTGAGTACAAACAAGCCTCG 58.520 47.619 0.00 0.00 32.88 4.63
2389 3781 5.215160 CAAATGTGAGTACAAACAAGCCTC 58.785 41.667 4.93 0.00 40.84 4.70
2390 3782 4.499696 GCAAATGTGAGTACAAACAAGCCT 60.500 41.667 4.93 0.00 40.84 4.58
2391 3783 3.735746 GCAAATGTGAGTACAAACAAGCC 59.264 43.478 4.93 0.00 40.84 4.35
2392 3784 4.207019 GTGCAAATGTGAGTACAAACAAGC 59.793 41.667 4.93 9.42 40.84 4.01
2393 3785 5.581605 AGTGCAAATGTGAGTACAAACAAG 58.418 37.500 4.93 1.09 40.84 3.16
2394 3786 5.574891 AGTGCAAATGTGAGTACAAACAA 57.425 34.783 4.93 0.00 40.84 2.83
2395 3787 6.052360 TCTAGTGCAAATGTGAGTACAAACA 58.948 36.000 0.00 0.00 40.84 2.83
2686 4086 9.334693 GAGCACACAAAATGAAACTATTAGAAG 57.665 33.333 0.00 0.00 0.00 2.85
2781 4181 1.627329 AGAAAACGAGGTTAGACCCCC 59.373 52.381 0.00 0.00 39.75 5.40
2815 4215 5.882557 AGATTCAGTCATTTTGCTCCGTATT 59.117 36.000 0.00 0.00 0.00 1.89
2863 4263 7.919313 TTTCAATACGAACTACATACGGATC 57.081 36.000 0.00 0.00 31.73 3.36
2973 4376 8.855110 CAGGAGTAATAGATTCACTACATCTGT 58.145 37.037 0.00 0.00 32.94 3.41
2976 4379 9.906660 CTTCAGGAGTAATAGATTCACTACATC 57.093 37.037 0.00 0.00 33.62 3.06
3005 4408 7.071572 AGAGTACTACCCTGGTTTGAAACTAAA 59.928 37.037 8.09 0.00 0.00 1.85
3080 4483 2.698855 AATGATCGGAAGGACCACTG 57.301 50.000 0.00 0.00 38.90 3.66
3084 4487 5.277345 CGAAAACATAATGATCGGAAGGACC 60.277 44.000 0.00 0.00 0.00 4.46
3125 4528 6.127054 ACGAGTCTGAAGATCATTATCCCAAA 60.127 38.462 0.00 0.00 31.98 3.28
3309 4718 5.811613 TCTTCCGAAAACACTAGAACGAAAA 59.188 36.000 0.00 0.00 0.00 2.29
3329 4738 6.393171 AGTTTAGCAATCTGCCAAATTCTTC 58.607 36.000 0.00 0.00 46.52 2.87
3362 4771 7.981225 CCACAATAACAATAATGAAAAGAGGGG 59.019 37.037 0.00 0.00 0.00 4.79
3401 4810 7.054491 ACAACATAAAAGAAGGTTGCTCAAT 57.946 32.000 0.00 0.00 43.23 2.57
3425 4834 7.201145 GGTAGAAGATTTTGACAGCGAGTATA 58.799 38.462 0.00 0.00 0.00 1.47
3444 4853 1.190833 TTTACGGGTGGCGGGTAGAA 61.191 55.000 0.00 0.00 0.00 2.10
3448 4857 2.045731 CATTTACGGGTGGCGGGT 60.046 61.111 0.00 0.00 0.00 5.28
3679 5090 6.238239 GCTACCTTACAAAAATCTAGAGCAGC 60.238 42.308 0.00 0.00 0.00 5.25
3844 5460 3.312736 ACCCATTGTGACCTGAAGTTT 57.687 42.857 0.00 0.00 0.00 2.66
3950 5568 1.217882 ATAGATGCACCGCGCTTAAC 58.782 50.000 5.56 0.00 43.06 2.01
4010 5629 9.801714 GAAGAGACAAAAACAAATAAATGCATG 57.198 29.630 0.00 0.00 0.00 4.06
4029 5648 6.848451 AGTTCGAAGTGATAAGAGAAGAGAC 58.152 40.000 4.28 0.00 0.00 3.36
4069 5688 9.359653 AGATTAGCAAGCATAAAAATGGTAGAT 57.640 29.630 0.00 0.00 0.00 1.98
4205 5824 5.356751 CCTGCATAGTACCAAACATTGCTTA 59.643 40.000 0.00 0.00 38.42 3.09
4497 6117 8.292444 ACAAATAAACTTAGCAATATGAGGCA 57.708 30.769 0.00 0.00 0.00 4.75
4570 6190 3.915437 AGCACAACCGAATAAAACTGG 57.085 42.857 0.00 0.00 0.00 4.00
4625 6275 2.957402 ATGGCTGAGTTCAGAACCAA 57.043 45.000 13.13 0.00 46.59 3.67
4739 6389 3.445008 TGAACCTCCTCAGTGAAGCTAT 58.555 45.455 0.00 0.00 0.00 2.97
4775 6425 4.784177 ACATGATGCCTGACATGAATGTA 58.216 39.130 12.90 0.00 44.28 2.29
4822 6472 7.725844 ACCAGACAGTTTTCTTTTTAGGATCAT 59.274 33.333 0.00 0.00 0.00 2.45
4926 6576 6.956202 ATTGATCAAACTGATGGGATTCTC 57.044 37.500 13.09 0.00 37.20 2.87
4929 6579 8.543293 AACATATTGATCAAACTGATGGGATT 57.457 30.769 21.08 8.52 37.20 3.01
4931 6581 6.547141 GGAACATATTGATCAAACTGATGGGA 59.453 38.462 21.08 0.00 37.20 4.37
4932 6582 6.513884 CGGAACATATTGATCAAACTGATGGG 60.514 42.308 21.08 6.63 37.20 4.00
4961 6611 2.966050 AGGTCGAGCAGATTTGAACTC 58.034 47.619 18.15 0.00 0.00 3.01
4966 6616 2.482142 GGGACTAGGTCGAGCAGATTTG 60.482 54.545 18.15 0.00 32.65 2.32
5105 6755 7.252612 TGGAATGAAGAGGTATCACAGTTAA 57.747 36.000 0.00 0.00 0.00 2.01
5117 6767 4.459330 GGGATCTCTTTGGAATGAAGAGG 58.541 47.826 12.41 0.00 46.41 3.69
5138 6790 1.347707 TGCAAGGCTATATTCCCTCGG 59.652 52.381 0.00 0.00 0.00 4.63
5148 6800 2.370189 GAGGGAGTACATGCAAGGCTAT 59.630 50.000 0.00 0.00 0.00 2.97
5164 6816 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
5165 6817 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5166 6818 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5167 6819 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
5168 6820 3.256383 TCTGACAAGTATTTTCGGACGGA 59.744 43.478 0.00 0.00 0.00 4.69
5169 6821 3.581755 TCTGACAAGTATTTTCGGACGG 58.418 45.455 0.00 0.00 0.00 4.79
5170 6822 4.482386 TCTCTGACAAGTATTTTCGGACG 58.518 43.478 0.00 0.00 0.00 4.79
5171 6823 6.780706 TTTCTCTGACAAGTATTTTCGGAC 57.219 37.500 0.00 0.00 0.00 4.79
5172 6824 7.158697 TCATTTCTCTGACAAGTATTTTCGGA 58.841 34.615 0.00 0.00 0.00 4.55
5173 6825 7.364522 TCATTTCTCTGACAAGTATTTTCGG 57.635 36.000 0.00 0.00 0.00 4.30
5181 6833 9.918630 CCATTTTTATTCATTTCTCTGACAAGT 57.081 29.630 0.00 0.00 0.00 3.16
5224 6876 9.813826 TCAGAGAAATGGATGTATCTAGACATA 57.186 33.333 0.00 0.00 40.18 2.29
5225 6877 8.584157 GTCAGAGAAATGGATGTATCTAGACAT 58.416 37.037 0.00 0.00 42.82 3.06
5226 6878 7.561356 TGTCAGAGAAATGGATGTATCTAGACA 59.439 37.037 0.00 0.00 36.00 3.41
5227 6879 7.946207 TGTCAGAGAAATGGATGTATCTAGAC 58.054 38.462 0.00 0.00 32.25 2.59
5228 6880 8.539117 TTGTCAGAGAAATGGATGTATCTAGA 57.461 34.615 0.00 0.00 0.00 2.43
5229 6881 8.420222 ACTTGTCAGAGAAATGGATGTATCTAG 58.580 37.037 0.00 0.00 0.00 2.43
5230 6882 8.311395 ACTTGTCAGAGAAATGGATGTATCTA 57.689 34.615 0.00 0.00 0.00 1.98
5231 6883 7.192852 ACTTGTCAGAGAAATGGATGTATCT 57.807 36.000 0.00 0.00 0.00 1.98
5232 6884 9.553064 AATACTTGTCAGAGAAATGGATGTATC 57.447 33.333 0.00 0.00 0.00 2.24
5233 6885 9.911788 AAATACTTGTCAGAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
5234 6886 9.383519 GAAATACTTGTCAGAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
5235 6887 7.337942 GGAAATACTTGTCAGAGAAATGGATGT 59.662 37.037 0.00 0.00 0.00 3.06
5236 6888 7.466455 CGGAAATACTTGTCAGAGAAATGGATG 60.466 40.741 0.00 0.00 0.00 3.51
5237 6889 6.540189 CGGAAATACTTGTCAGAGAAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
5238 6890 5.874810 CGGAAATACTTGTCAGAGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
5239 6891 5.643777 ACGGAAATACTTGTCAGAGAAATGG 59.356 40.000 0.00 0.00 0.00 3.16
5240 6892 6.727824 ACGGAAATACTTGTCAGAGAAATG 57.272 37.500 0.00 0.00 0.00 2.32
5241 6893 6.530534 CGTACGGAAATACTTGTCAGAGAAAT 59.469 38.462 7.57 0.00 0.00 2.17
5242 6894 5.860182 CGTACGGAAATACTTGTCAGAGAAA 59.140 40.000 7.57 0.00 0.00 2.52
5243 6895 5.396484 CGTACGGAAATACTTGTCAGAGAA 58.604 41.667 7.57 0.00 0.00 2.87
5244 6896 4.142534 CCGTACGGAAATACTTGTCAGAGA 60.143 45.833 30.64 0.00 37.50 3.10
5245 6897 4.103357 CCGTACGGAAATACTTGTCAGAG 58.897 47.826 30.64 0.00 37.50 3.35
5246 6898 3.758023 TCCGTACGGAAATACTTGTCAGA 59.242 43.478 33.96 6.50 42.05 3.27
5247 6899 4.100707 TCCGTACGGAAATACTTGTCAG 57.899 45.455 33.96 3.20 42.05 3.51
5248 6900 3.119388 CCTCCGTACGGAAATACTTGTCA 60.119 47.826 34.77 10.83 44.66 3.58
5249 6901 3.442100 CCTCCGTACGGAAATACTTGTC 58.558 50.000 34.77 0.00 44.66 3.18
5250 6902 2.167075 CCCTCCGTACGGAAATACTTGT 59.833 50.000 34.77 0.00 44.66 3.16
5251 6903 2.428171 TCCCTCCGTACGGAAATACTTG 59.572 50.000 34.77 21.77 44.66 3.16
5252 6904 2.692041 CTCCCTCCGTACGGAAATACTT 59.308 50.000 34.77 0.00 44.66 2.24
5253 6905 2.305009 CTCCCTCCGTACGGAAATACT 58.695 52.381 34.77 0.00 44.66 2.12
5254 6906 2.027385 ACTCCCTCCGTACGGAAATAC 58.973 52.381 34.77 0.00 44.66 1.89
5255 6907 2.442236 ACTCCCTCCGTACGGAAATA 57.558 50.000 34.77 21.70 44.66 1.40
5256 6908 2.027385 GTACTCCCTCCGTACGGAAAT 58.973 52.381 34.77 20.78 44.66 2.17
5257 6909 1.271871 TGTACTCCCTCCGTACGGAAA 60.272 52.381 34.77 22.33 44.66 3.13
5258 6910 0.327924 TGTACTCCCTCCGTACGGAA 59.672 55.000 34.77 21.09 44.66 4.30
5259 6911 0.327924 TTGTACTCCCTCCGTACGGA 59.672 55.000 33.55 33.55 39.98 4.69
5260 6912 0.453390 GTTGTACTCCCTCCGTACGG 59.547 60.000 28.66 28.66 39.98 4.02
5261 6913 1.457346 AGTTGTACTCCCTCCGTACG 58.543 55.000 8.69 8.69 39.98 3.67
5262 6914 4.013050 ACTAAGTTGTACTCCCTCCGTAC 58.987 47.826 0.00 0.00 38.13 3.67
5263 6915 4.012374 CACTAAGTTGTACTCCCTCCGTA 58.988 47.826 0.00 0.00 0.00 4.02
5264 6916 2.824341 CACTAAGTTGTACTCCCTCCGT 59.176 50.000 0.00 0.00 0.00 4.69
5265 6917 2.416972 GCACTAAGTTGTACTCCCTCCG 60.417 54.545 0.00 0.00 0.00 4.63
5266 6918 2.565834 TGCACTAAGTTGTACTCCCTCC 59.434 50.000 0.00 0.00 0.00 4.30
5267 6919 3.510360 TCTGCACTAAGTTGTACTCCCTC 59.490 47.826 0.00 0.00 0.00 4.30
5268 6920 3.258622 GTCTGCACTAAGTTGTACTCCCT 59.741 47.826 0.00 0.00 0.00 4.20
5269 6921 3.258622 AGTCTGCACTAAGTTGTACTCCC 59.741 47.826 0.00 0.00 0.00 4.30
5270 6922 4.238514 CAGTCTGCACTAAGTTGTACTCC 58.761 47.826 0.00 0.00 0.00 3.85
5271 6923 4.872664 ACAGTCTGCACTAAGTTGTACTC 58.127 43.478 0.00 0.00 0.00 2.59
5272 6924 4.939052 ACAGTCTGCACTAAGTTGTACT 57.061 40.909 0.00 0.00 0.00 2.73
5273 6925 7.310664 TGTATACAGTCTGCACTAAGTTGTAC 58.689 38.462 0.08 0.00 0.00 2.90
5279 6931 5.292765 CCCATGTATACAGTCTGCACTAAG 58.707 45.833 11.91 0.00 0.00 2.18
5280 6932 4.100963 CCCCATGTATACAGTCTGCACTAA 59.899 45.833 11.91 0.00 0.00 2.24
5317 7263 9.817365 CTCTGTTCATCAAAAATACTGTAGTTG 57.183 33.333 0.84 2.46 0.00 3.16
5328 7274 9.436957 GGTATCTTACTCTCTGTTCATCAAAAA 57.563 33.333 0.00 0.00 0.00 1.94
5333 7279 6.969993 AGGGTATCTTACTCTCTGTTCATC 57.030 41.667 0.00 0.00 33.13 2.92
5355 7301 7.323420 TCATGTCCTAGTATGAGAAACACAAG 58.677 38.462 0.00 0.00 0.00 3.16
5362 7308 9.475620 TCTTAAGTTCATGTCCTAGTATGAGAA 57.524 33.333 1.63 0.00 35.01 2.87
5442 7389 1.719780 CAACTAACTCTTGACGGCGAC 59.280 52.381 16.62 8.59 0.00 5.19
5445 7392 1.461127 CTGCAACTAACTCTTGACGGC 59.539 52.381 0.00 0.00 0.00 5.68
5477 7424 6.153170 TGCAACACCATGATTACATTCAGATT 59.847 34.615 0.00 0.00 34.15 2.40
5478 7425 5.653330 TGCAACACCATGATTACATTCAGAT 59.347 36.000 0.00 0.00 34.15 2.90
5488 7435 3.173668 GCATGATGCAACACCATGATT 57.826 42.857 13.36 0.00 44.26 2.57
5536 7483 5.702065 TGGGTAAATAACTCTGGTATGCA 57.298 39.130 0.00 0.00 0.00 3.96
5537 7484 7.255569 GTTTTGGGTAAATAACTCTGGTATGC 58.744 38.462 0.00 0.00 0.00 3.14
5538 7485 7.394923 TGGTTTTGGGTAAATAACTCTGGTATG 59.605 37.037 0.00 0.00 0.00 2.39
5539 7486 7.471890 TGGTTTTGGGTAAATAACTCTGGTAT 58.528 34.615 0.00 0.00 0.00 2.73
5540 7487 6.850234 TGGTTTTGGGTAAATAACTCTGGTA 58.150 36.000 0.00 0.00 0.00 3.25
5541 7488 5.707495 TGGTTTTGGGTAAATAACTCTGGT 58.293 37.500 0.00 0.00 0.00 4.00
5542 7489 6.435904 TGATGGTTTTGGGTAAATAACTCTGG 59.564 38.462 0.00 0.00 0.00 3.86
5543 7490 7.040062 TGTGATGGTTTTGGGTAAATAACTCTG 60.040 37.037 0.00 0.00 0.00 3.35
5629 7578 2.735762 GCGTTACAGGTTAGGCTCAGAG 60.736 54.545 0.00 0.00 0.00 3.35
6734 8906 2.046507 CCACCTGTCAGGCTGAGC 60.047 66.667 19.38 13.26 39.63 4.26
6980 9167 2.677573 CGATGTCGTATGCCTCCGCA 62.678 60.000 0.00 0.00 41.36 5.69
6989 9176 1.658717 GAGCGCTGCGATGTCGTAT 60.659 57.895 28.07 0.00 42.22 3.06
7082 9269 1.910580 GCCTCCCATTGACCGGAAGA 61.911 60.000 9.46 0.00 0.00 2.87
7094 9281 3.473647 CTGCTCATCCGCCTCCCA 61.474 66.667 0.00 0.00 0.00 4.37
7126 9313 0.686789 TTGAGCTTCTGGTGCTGCTA 59.313 50.000 0.00 0.00 41.30 3.49
7271 9461 1.079127 GCTGTAGCTGGAAAGCGGA 60.079 57.895 0.00 0.00 40.27 5.54
7500 9690 1.318576 GTGGTGAGTTCCAAACCAGG 58.681 55.000 0.00 0.00 44.44 4.45
7583 9773 7.823149 TCGCTAACTGTCTTTAATAACCTTC 57.177 36.000 0.00 0.00 0.00 3.46
7593 9783 4.694339 ACTCAAGTTCGCTAACTGTCTTT 58.306 39.130 4.14 0.00 45.37 2.52
7634 9824 2.464865 CTGCTACCGCTATCACTTCAC 58.535 52.381 0.00 0.00 36.97 3.18
7635 9825 1.409064 CCTGCTACCGCTATCACTTCA 59.591 52.381 0.00 0.00 36.97 3.02
7636 9826 1.269831 CCCTGCTACCGCTATCACTTC 60.270 57.143 0.00 0.00 36.97 3.01
7637 9827 0.753262 CCCTGCTACCGCTATCACTT 59.247 55.000 0.00 0.00 36.97 3.16
7638 9828 0.106167 TCCCTGCTACCGCTATCACT 60.106 55.000 0.00 0.00 36.97 3.41
7657 9847 0.322008 CGCCCTTGGAGCTTCTTTCT 60.322 55.000 0.00 0.00 0.00 2.52
7731 9921 1.003928 AGCATGTCATTCTGAGGTGCA 59.996 47.619 13.07 0.00 39.19 4.57
7763 9953 6.488683 TGTTCAAAAGAACCCATCGACTAAAT 59.511 34.615 5.96 0.00 34.37 1.40
7805 9995 5.477984 AGAACATAACATCTGCCAACATGTT 59.522 36.000 4.92 4.92 43.91 2.71
7880 10231 5.389516 CCTCGTTTTGGTAAGAAGAATGACG 60.390 44.000 0.00 0.00 0.00 4.35
8045 10704 4.082845 CGATGGGAGATGATAGTACAGGT 58.917 47.826 0.00 0.00 0.00 4.00
8090 10749 2.630158 ACATCATGCAGAAGTGAGAGC 58.370 47.619 0.00 0.00 0.00 4.09
8122 10869 4.800582 GCATCTGGATGGATTCGTATGTGA 60.801 45.833 11.82 0.00 39.16 3.58
8173 10920 8.333186 GTGTATTTAACGAGACAAATATCACCC 58.667 37.037 0.00 0.00 31.29 4.61
8174 10921 8.875803 TGTGTATTTAACGAGACAAATATCACC 58.124 33.333 0.00 0.00 33.52 4.02
8188 10935 9.393249 ACTGTTGAAATGATTGTGTATTTAACG 57.607 29.630 0.00 0.00 0.00 3.18
8216 10963 6.816134 TGTGCATTACTTTGAGCTATTTGA 57.184 33.333 0.00 0.00 0.00 2.69
8329 11077 4.098654 CCCAACAACATGTGTCCTTTAACA 59.901 41.667 0.00 0.00 40.60 2.41
8330 11078 4.616953 CCCAACAACATGTGTCCTTTAAC 58.383 43.478 0.00 0.00 40.60 2.01
8350 11098 4.702131 CCCAATAGCTGAGTTATTATGCCC 59.298 45.833 1.16 0.00 0.00 5.36
8363 11111 2.336945 TCTCACATGCCCAATAGCTG 57.663 50.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.