Multiple sequence alignment - TraesCS4D01G181600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G181600 chr4D 100.000 6465 0 0 1 6465 317512631 317519095 0.000000e+00 11939.0
1 TraesCS4D01G181600 chr4D 96.266 723 27 0 5743 6465 394415558 394416280 0.000000e+00 1186.0
2 TraesCS4D01G181600 chr4D 96.022 729 22 2 5740 6465 317530927 317531651 0.000000e+00 1179.0
3 TraesCS4D01G181600 chr4D 90.765 379 15 6 142 512 300288254 300288620 7.530000e-134 488.0
4 TraesCS4D01G181600 chr4D 91.139 316 21 4 201 512 345346785 345347097 7.750000e-114 422.0
5 TraesCS4D01G181600 chr4D 84.000 225 31 5 3731 3954 449830067 449829847 1.830000e-50 211.0
6 TraesCS4D01G181600 chr4D 92.199 141 10 1 1 140 441072359 441072219 1.420000e-46 198.0
7 TraesCS4D01G181600 chr4B 95.078 4815 127 28 517 5272 394547566 394552329 0.000000e+00 7478.0
8 TraesCS4D01G181600 chr4B 93.725 510 23 3 5242 5742 394552334 394552843 0.000000e+00 756.0
9 TraesCS4D01G181600 chr4B 94.118 119 6 1 12 129 394547446 394547564 5.150000e-41 180.0
10 TraesCS4D01G181600 chr4A 95.522 2300 71 11 3463 5742 157328960 157326673 0.000000e+00 3648.0
11 TraesCS4D01G181600 chr4A 94.652 2225 69 22 1224 3424 157336680 157334482 0.000000e+00 3404.0
12 TraesCS4D01G181600 chr4A 94.747 514 20 3 696 1202 157337568 157337055 0.000000e+00 793.0
13 TraesCS4D01G181600 chr4A 92.254 142 10 1 1 141 157338008 157337867 3.950000e-47 200.0
14 TraesCS4D01G181600 chr4A 87.719 171 12 4 514 677 157337875 157337707 2.380000e-44 191.0
15 TraesCS4D01G181600 chr5D 96.414 725 25 1 5742 6465 321983008 321983732 0.000000e+00 1194.0
16 TraesCS4D01G181600 chr5D 95.989 723 28 1 5743 6465 465451191 465450470 0.000000e+00 1173.0
17 TraesCS4D01G181600 chr5D 95.736 727 29 2 5740 6465 376681761 376682486 0.000000e+00 1170.0
18 TraesCS4D01G181600 chr5D 91.927 384 16 9 142 512 448134814 448135195 2.070000e-144 523.0
19 TraesCS4D01G181600 chr5D 91.977 349 17 6 169 512 438716269 438715927 4.530000e-131 479.0
20 TraesCS4D01G181600 chr5D 89.969 319 24 8 196 510 422435107 422434793 7.810000e-109 405.0
21 TraesCS4D01G181600 chr3D 96.138 725 26 2 5743 6465 557696280 557697004 0.000000e+00 1182.0
22 TraesCS4D01G181600 chr3D 95.856 724 30 0 5742 6465 150846303 150845580 0.000000e+00 1171.0
23 TraesCS4D01G181600 chr3D 88.071 394 25 10 136 512 585095749 585096137 1.280000e-121 448.0
24 TraesCS4D01G181600 chr3D 86.802 394 18 11 142 512 504054258 504053876 6.030000e-110 409.0
25 TraesCS4D01G181600 chr3D 94.366 71 4 0 201 271 594190414 594190484 6.850000e-20 110.0
26 TraesCS4D01G181600 chr6D 95.994 724 27 2 5740 6462 2586286 2587008 0.000000e+00 1175.0
27 TraesCS4D01G181600 chr6D 87.313 402 17 12 141 512 46932300 46932697 4.630000e-116 429.0
28 TraesCS4D01G181600 chr2D 95.994 724 27 2 5743 6465 489401193 489400471 0.000000e+00 1175.0
29 TraesCS4D01G181600 chr5A 91.061 358 16 6 169 512 457087864 457088219 2.730000e-128 470.0
30 TraesCS4D01G181600 chr5A 94.118 85 5 0 514 598 704198259 704198175 5.260000e-26 130.0
31 TraesCS4D01G181600 chr5A 94.118 85 5 0 514 598 704241293 704241209 5.260000e-26 130.0
32 TraesCS4D01G181600 chr5A 94.118 85 5 0 514 598 704329012 704328928 5.260000e-26 130.0
33 TraesCS4D01G181600 chr5A 93.976 83 5 0 514 596 704089449 704089367 6.800000e-25 126.0
34 TraesCS4D01G181600 chr5A 92.941 85 6 0 514 598 704119994 704119910 2.450000e-24 124.0
35 TraesCS4D01G181600 chr7A 89.431 369 12 7 169 512 25042926 25042560 2.140000e-119 440.0
36 TraesCS4D01G181600 chr1D 90.087 343 9 6 201 518 32383063 32383405 7.750000e-114 422.0
37 TraesCS4D01G181600 chr2B 89.552 335 13 7 200 513 746171066 746170733 7.810000e-109 405.0
38 TraesCS4D01G181600 chr2B 90.110 273 25 2 169 439 637101559 637101287 2.870000e-93 353.0
39 TraesCS4D01G181600 chr5B 88.986 345 13 7 202 521 484639023 484638679 2.810000e-108 403.0
40 TraesCS4D01G181600 chr5B 95.851 241 8 2 201 439 216654689 216654929 7.860000e-104 388.0
41 TraesCS4D01G181600 chr5B 86.014 143 17 3 1 141 655631225 655631366 4.040000e-32 150.0
42 TraesCS4D01G181600 chr6A 87.166 374 23 10 169 519 576001947 576002318 1.010000e-107 401.0
43 TraesCS4D01G181600 chr6A 86.757 370 21 9 169 512 583264444 583264811 2.830000e-103 387.0
44 TraesCS4D01G181600 chr6A 91.667 48 2 2 5697 5742 145218374 145218327 1.500000e-06 65.8
45 TraesCS4D01G181600 chr7B 87.826 345 12 9 201 515 653240805 653240461 1.700000e-100 377.0
46 TraesCS4D01G181600 chr1B 85.960 349 37 10 169 510 669802129 669802472 4.760000e-96 363.0
47 TraesCS4D01G181600 chrUn 92.254 142 10 1 1 141 109055139 109055280 3.950000e-47 200.0
48 TraesCS4D01G181600 chrUn 93.750 48 3 0 514 561 357021674 357021627 8.990000e-09 73.1
49 TraesCS4D01G181600 chr7D 88.732 142 15 1 1 141 547682356 547682497 8.620000e-39 172.0
50 TraesCS4D01G181600 chr7D 95.122 41 2 0 542 582 615562172 615562132 1.500000e-06 65.8
51 TraesCS4D01G181600 chr3B 90.244 123 11 1 1 122 51998738 51998616 6.710000e-35 159.0
52 TraesCS4D01G181600 chr3B 89.431 123 12 1 1 122 52035311 52035189 3.120000e-33 154.0
53 TraesCS4D01G181600 chr3B 88.618 123 13 1 1 122 52018899 52018777 1.450000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G181600 chr4D 317512631 317519095 6464 False 11939.000000 11939 100.000 1 6465 1 chr4D.!!$F2 6464
1 TraesCS4D01G181600 chr4D 394415558 394416280 722 False 1186.000000 1186 96.266 5743 6465 1 chr4D.!!$F5 722
2 TraesCS4D01G181600 chr4D 317530927 317531651 724 False 1179.000000 1179 96.022 5740 6465 1 chr4D.!!$F3 725
3 TraesCS4D01G181600 chr4B 394547446 394552843 5397 False 2804.666667 7478 94.307 12 5742 3 chr4B.!!$F1 5730
4 TraesCS4D01G181600 chr4A 157326673 157328960 2287 True 3648.000000 3648 95.522 3463 5742 1 chr4A.!!$R1 2279
5 TraesCS4D01G181600 chr4A 157334482 157338008 3526 True 1147.000000 3404 92.343 1 3424 4 chr4A.!!$R2 3423
6 TraesCS4D01G181600 chr5D 321983008 321983732 724 False 1194.000000 1194 96.414 5742 6465 1 chr5D.!!$F1 723
7 TraesCS4D01G181600 chr5D 465450470 465451191 721 True 1173.000000 1173 95.989 5743 6465 1 chr5D.!!$R3 722
8 TraesCS4D01G181600 chr5D 376681761 376682486 725 False 1170.000000 1170 95.736 5740 6465 1 chr5D.!!$F2 725
9 TraesCS4D01G181600 chr3D 557696280 557697004 724 False 1182.000000 1182 96.138 5743 6465 1 chr3D.!!$F1 722
10 TraesCS4D01G181600 chr3D 150845580 150846303 723 True 1171.000000 1171 95.856 5742 6465 1 chr3D.!!$R1 723
11 TraesCS4D01G181600 chr6D 2586286 2587008 722 False 1175.000000 1175 95.994 5740 6462 1 chr6D.!!$F1 722
12 TraesCS4D01G181600 chr2D 489400471 489401193 722 True 1175.000000 1175 95.994 5743 6465 1 chr2D.!!$R1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 294 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01 F
293 295 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92 F
295 297 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68 F
1162 1301 0.107703 TGGAGCTTGTAGGCGATTGG 60.108 55.000 0.00 0.00 37.29 3.16 F
1293 1785 1.747355 GGAGATGGCATGGTTGTGAAG 59.253 52.381 3.81 0.00 0.00 3.02 F
1310 1802 2.000447 GAAGTTTCCTCACGGGATTCG 59.000 52.381 0.00 0.00 44.66 3.34 F
1644 2149 2.090831 AGGGCTGTAGATCTGGAGACAT 60.091 50.000 5.18 0.00 41.51 3.06 F
3400 3934 2.798847 GCTTTTATTCTACTACCCGCCG 59.201 50.000 0.00 0.00 0.00 6.46 F
4632 5166 0.605589 GGTGAACACAGGCTGGGTAC 60.606 60.000 24.95 18.37 28.95 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 2009 0.981183 TAGATCCCCACCACACACAC 59.019 55.000 0.00 0.00 0.00 3.82 R
1518 2011 1.134098 CCATAGATCCCCACCACACAC 60.134 57.143 0.00 0.00 0.00 3.82 R
2145 2660 1.831580 AGTGAAGCAGCATTCTTCCC 58.168 50.000 0.00 0.33 37.57 3.97 R
2691 3220 2.472695 TACATTGCCCTCAGTGTCAC 57.527 50.000 0.00 0.00 41.42 3.67 R
3090 3623 7.250569 TGCAGCTTCTAGTATTTTGCATTAAC 58.749 34.615 0.00 0.00 35.41 2.01 R
3289 3823 9.809096 CGTCTGATGCCTATTCAAATATAGTAT 57.191 33.333 0.00 0.00 0.00 2.12 R
3626 4160 4.946157 ACATCAAGAATAGCACCTGGAAAG 59.054 41.667 0.00 0.00 0.00 2.62 R
5000 5538 2.437281 CCTGAGCCAGATATGGAACTGT 59.563 50.000 11.49 0.00 32.44 3.55 R
6267 6877 0.320073 CAAGCGGTAACCTGACGGAA 60.320 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.453393 TCCAGTCTTCTAGTCATTGTTCAATT 58.547 34.615 0.00 0.00 0.00 2.32
42 43 7.775120 AGTCATTGTTCAATTTGACTCAAGTT 58.225 30.769 12.93 0.00 44.00 2.66
129 131 6.808008 AATTAAGGAGTTGATGTGTGACAG 57.192 37.500 0.00 0.00 0.00 3.51
133 135 3.643320 AGGAGTTGATGTGTGACAGAGAA 59.357 43.478 0.00 0.00 0.00 2.87
141 143 7.294676 TGATGTGTGACAGAGAATTTATTCG 57.705 36.000 0.00 0.00 41.56 3.34
142 144 6.313658 TGATGTGTGACAGAGAATTTATTCGG 59.686 38.462 0.00 0.00 41.56 4.30
143 145 5.789521 TGTGTGACAGAGAATTTATTCGGA 58.210 37.500 0.00 0.00 41.56 4.55
144 146 5.637810 TGTGTGACAGAGAATTTATTCGGAC 59.362 40.000 0.00 0.00 41.56 4.79
145 147 4.862574 TGTGACAGAGAATTTATTCGGACG 59.137 41.667 0.00 0.00 41.56 4.79
146 148 3.863424 TGACAGAGAATTTATTCGGACGC 59.137 43.478 0.00 0.00 41.56 5.19
147 149 2.858344 ACAGAGAATTTATTCGGACGCG 59.142 45.455 3.53 3.53 41.56 6.01
148 150 2.218759 CAGAGAATTTATTCGGACGCGG 59.781 50.000 12.47 0.00 41.56 6.46
149 151 0.935196 AGAATTTATTCGGACGCGGC 59.065 50.000 12.47 7.53 41.56 6.53
150 152 0.935196 GAATTTATTCGGACGCGGCT 59.065 50.000 13.91 0.00 0.00 5.52
151 153 2.129607 GAATTTATTCGGACGCGGCTA 58.870 47.619 13.91 0.00 0.00 3.93
152 154 2.228138 ATTTATTCGGACGCGGCTAA 57.772 45.000 13.91 7.43 0.00 3.09
153 155 2.228138 TTTATTCGGACGCGGCTAAT 57.772 45.000 13.91 14.99 0.00 1.73
154 156 1.774639 TTATTCGGACGCGGCTAATC 58.225 50.000 13.91 0.00 0.00 1.75
155 157 0.956633 TATTCGGACGCGGCTAATCT 59.043 50.000 13.91 0.00 0.00 2.40
156 158 0.597637 ATTCGGACGCGGCTAATCTG 60.598 55.000 13.91 3.65 0.00 2.90
157 159 3.330853 CGGACGCGGCTAATCTGC 61.331 66.667 13.91 0.00 43.66 4.26
162 164 3.272334 GCGGCTAATCTGCACCCG 61.272 66.667 0.00 0.00 46.35 5.28
163 165 2.499205 CGGCTAATCTGCACCCGA 59.501 61.111 0.00 0.00 41.34 5.14
164 166 1.592669 CGGCTAATCTGCACCCGAG 60.593 63.158 0.00 0.00 41.34 4.63
165 167 1.889573 GGCTAATCTGCACCCGAGC 60.890 63.158 0.00 0.00 34.04 5.03
166 168 1.144936 GCTAATCTGCACCCGAGCT 59.855 57.895 0.00 0.00 34.99 4.09
167 169 0.878086 GCTAATCTGCACCCGAGCTC 60.878 60.000 2.73 2.73 34.99 4.09
168 170 0.461548 CTAATCTGCACCCGAGCTCA 59.538 55.000 15.40 0.00 34.99 4.26
169 171 0.175760 TAATCTGCACCCGAGCTCAC 59.824 55.000 15.40 0.00 34.99 3.51
170 172 1.830587 AATCTGCACCCGAGCTCACA 61.831 55.000 15.40 2.53 34.99 3.58
171 173 2.236223 ATCTGCACCCGAGCTCACAG 62.236 60.000 15.40 12.11 34.99 3.66
172 174 3.231889 CTGCACCCGAGCTCACAGT 62.232 63.158 15.40 4.41 34.99 3.55
173 175 1.877576 CTGCACCCGAGCTCACAGTA 61.878 60.000 15.40 0.00 34.99 2.74
174 176 1.292223 GCACCCGAGCTCACAGTAA 59.708 57.895 15.40 0.00 0.00 2.24
175 177 0.320421 GCACCCGAGCTCACAGTAAA 60.320 55.000 15.40 0.00 0.00 2.01
176 178 1.876416 GCACCCGAGCTCACAGTAAAA 60.876 52.381 15.40 0.00 0.00 1.52
177 179 2.699954 CACCCGAGCTCACAGTAAAAT 58.300 47.619 15.40 0.00 0.00 1.82
178 180 2.673368 CACCCGAGCTCACAGTAAAATC 59.327 50.000 15.40 0.00 0.00 2.17
179 181 1.927174 CCCGAGCTCACAGTAAAATCG 59.073 52.381 15.40 0.00 0.00 3.34
180 182 2.416836 CCCGAGCTCACAGTAAAATCGA 60.417 50.000 15.40 0.00 0.00 3.59
181 183 3.250744 CCGAGCTCACAGTAAAATCGAA 58.749 45.455 15.40 0.00 0.00 3.71
182 184 3.678072 CCGAGCTCACAGTAAAATCGAAA 59.322 43.478 15.40 0.00 0.00 3.46
183 185 4.151689 CCGAGCTCACAGTAAAATCGAAAA 59.848 41.667 15.40 0.00 0.00 2.29
184 186 5.333798 CCGAGCTCACAGTAAAATCGAAAAA 60.334 40.000 15.40 0.00 0.00 1.94
241 243 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
242 244 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
243 245 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
244 246 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
245 247 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
246 248 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
247 249 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
248 250 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
249 251 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
250 252 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
251 253 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
252 254 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
253 255 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
254 256 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
255 257 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
256 258 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
257 259 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
258 260 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
259 261 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
260 262 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
261 263 7.468922 AAGTTCTAAGTGCTTGCAAAAATTC 57.531 32.000 0.00 0.00 0.00 2.17
262 264 5.687285 AGTTCTAAGTGCTTGCAAAAATTCG 59.313 36.000 0.00 0.00 0.00 3.34
263 265 5.181690 TCTAAGTGCTTGCAAAAATTCGT 57.818 34.783 0.00 0.00 0.00 3.85
264 266 5.212194 TCTAAGTGCTTGCAAAAATTCGTC 58.788 37.500 0.00 0.00 0.00 4.20
265 267 3.435105 AGTGCTTGCAAAAATTCGTCA 57.565 38.095 0.00 0.00 0.00 4.35
266 268 3.981211 AGTGCTTGCAAAAATTCGTCAT 58.019 36.364 0.00 0.00 0.00 3.06
267 269 3.737266 AGTGCTTGCAAAAATTCGTCATG 59.263 39.130 0.00 0.00 0.00 3.07
268 270 3.735240 GTGCTTGCAAAAATTCGTCATGA 59.265 39.130 0.00 0.00 0.00 3.07
269 271 4.208873 GTGCTTGCAAAAATTCGTCATGAA 59.791 37.500 0.00 0.00 41.81 2.57
270 272 4.807834 TGCTTGCAAAAATTCGTCATGAAA 59.192 33.333 0.00 0.00 40.71 2.69
271 273 5.466058 TGCTTGCAAAAATTCGTCATGAAAT 59.534 32.000 0.00 0.00 40.71 2.17
272 274 6.011277 GCTTGCAAAAATTCGTCATGAAATC 58.989 36.000 0.00 0.00 40.71 2.17
273 275 6.346758 GCTTGCAAAAATTCGTCATGAAATCA 60.347 34.615 0.00 0.00 40.71 2.57
274 276 6.450845 TGCAAAAATTCGTCATGAAATCAC 57.549 33.333 0.00 0.00 40.71 3.06
275 277 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
276 278 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
277 279 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
278 280 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
279 281 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
280 282 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
281 283 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
282 284 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
283 285 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
284 286 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
285 287 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
286 288 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
287 289 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
288 290 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
289 291 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
290 292 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
291 293 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
292 294 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
293 295 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
294 296 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
295 297 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
296 298 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
297 299 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
322 324 7.812309 AACAAAAACAGTACTCTGAAAAAGC 57.188 32.000 0.00 0.00 43.76 3.51
323 325 7.158099 ACAAAAACAGTACTCTGAAAAAGCT 57.842 32.000 0.00 0.00 43.76 3.74
324 326 8.276252 ACAAAAACAGTACTCTGAAAAAGCTA 57.724 30.769 0.00 0.00 43.76 3.32
325 327 8.182227 ACAAAAACAGTACTCTGAAAAAGCTAC 58.818 33.333 0.00 0.00 43.76 3.58
326 328 8.398665 CAAAAACAGTACTCTGAAAAAGCTACT 58.601 33.333 0.00 0.00 43.76 2.57
327 329 8.507524 AAAACAGTACTCTGAAAAAGCTACTT 57.492 30.769 0.00 0.00 43.76 2.24
328 330 8.507524 AAACAGTACTCTGAAAAAGCTACTTT 57.492 30.769 0.00 0.00 43.76 2.66
329 331 7.716768 ACAGTACTCTGAAAAAGCTACTTTC 57.283 36.000 12.26 12.26 43.76 2.62
330 332 7.272978 ACAGTACTCTGAAAAAGCTACTTTCA 58.727 34.615 18.13 18.13 43.76 2.69
331 333 7.769044 ACAGTACTCTGAAAAAGCTACTTTCAA 59.231 33.333 19.14 12.10 41.10 2.69
332 334 8.612619 CAGTACTCTGAAAAAGCTACTTTCAAA 58.387 33.333 19.14 9.92 41.10 2.69
333 335 8.613482 AGTACTCTGAAAAAGCTACTTTCAAAC 58.387 33.333 19.14 15.25 41.10 2.93
334 336 6.487103 ACTCTGAAAAAGCTACTTTCAAACG 58.513 36.000 19.14 14.03 41.10 3.60
335 337 5.816919 TCTGAAAAAGCTACTTTCAAACGG 58.183 37.500 19.14 11.18 41.10 4.44
336 338 5.587043 TCTGAAAAAGCTACTTTCAAACGGA 59.413 36.000 19.14 12.71 41.10 4.69
337 339 6.262273 TCTGAAAAAGCTACTTTCAAACGGAT 59.738 34.615 19.14 0.00 41.10 4.18
338 340 6.801575 TGAAAAAGCTACTTTCAAACGGATT 58.198 32.000 17.31 0.00 39.28 3.01
339 341 7.262048 TGAAAAAGCTACTTTCAAACGGATTT 58.738 30.769 17.31 0.00 39.28 2.17
340 342 7.762159 TGAAAAAGCTACTTTCAAACGGATTTT 59.238 29.630 17.31 2.83 39.28 1.82
341 343 7.463469 AAAAGCTACTTTCAAACGGATTTTG 57.537 32.000 0.00 0.00 45.38 2.44
350 352 3.963665 CAAACGGATTTTGAAGCACTGA 58.036 40.909 0.00 0.00 46.76 3.41
351 353 4.358851 CAAACGGATTTTGAAGCACTGAA 58.641 39.130 0.00 0.00 46.76 3.02
352 354 4.853924 AACGGATTTTGAAGCACTGAAT 57.146 36.364 0.00 0.00 0.00 2.57
353 355 4.853924 ACGGATTTTGAAGCACTGAATT 57.146 36.364 0.00 0.00 0.00 2.17
354 356 5.200368 ACGGATTTTGAAGCACTGAATTT 57.800 34.783 0.00 0.00 0.00 1.82
355 357 4.984161 ACGGATTTTGAAGCACTGAATTTG 59.016 37.500 0.00 0.00 0.00 2.32
356 358 4.984161 CGGATTTTGAAGCACTGAATTTGT 59.016 37.500 0.00 0.00 0.00 2.83
357 359 5.463061 CGGATTTTGAAGCACTGAATTTGTT 59.537 36.000 0.00 0.00 0.00 2.83
358 360 6.018832 CGGATTTTGAAGCACTGAATTTGTTT 60.019 34.615 0.00 0.00 0.00 2.83
359 361 7.465781 CGGATTTTGAAGCACTGAATTTGTTTT 60.466 33.333 0.00 0.00 0.00 2.43
360 362 8.183536 GGATTTTGAAGCACTGAATTTGTTTTT 58.816 29.630 0.00 0.00 0.00 1.94
378 380 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
379 381 1.175983 TTTTGCCACGCCTTACAGGG 61.176 55.000 0.00 0.00 35.37 4.45
380 382 2.058125 TTTGCCACGCCTTACAGGGA 62.058 55.000 0.00 0.00 35.37 4.20
381 383 1.847798 TTGCCACGCCTTACAGGGAT 61.848 55.000 0.00 0.00 35.37 3.85
382 384 1.819632 GCCACGCCTTACAGGGATG 60.820 63.158 0.00 0.00 35.37 3.51
383 385 1.602237 CCACGCCTTACAGGGATGT 59.398 57.895 0.00 0.00 35.37 3.06
384 386 0.744414 CCACGCCTTACAGGGATGTG 60.744 60.000 0.00 0.00 35.37 3.21
385 387 0.249120 CACGCCTTACAGGGATGTGA 59.751 55.000 0.00 0.00 36.82 3.58
386 388 1.134401 CACGCCTTACAGGGATGTGAT 60.134 52.381 0.00 0.00 36.82 3.06
387 389 1.559682 ACGCCTTACAGGGATGTGATT 59.440 47.619 0.00 0.00 35.37 2.57
388 390 2.026262 ACGCCTTACAGGGATGTGATTT 60.026 45.455 0.00 0.00 35.37 2.17
389 391 2.614057 CGCCTTACAGGGATGTGATTTC 59.386 50.000 0.00 0.00 35.37 2.17
390 392 3.620488 GCCTTACAGGGATGTGATTTCA 58.380 45.455 0.00 0.00 35.37 2.69
391 393 4.210331 GCCTTACAGGGATGTGATTTCAT 58.790 43.478 0.00 0.00 35.37 2.57
392 394 4.037208 GCCTTACAGGGATGTGATTTCATG 59.963 45.833 0.00 0.00 35.37 3.07
393 395 5.439721 CCTTACAGGGATGTGATTTCATGA 58.560 41.667 0.00 0.00 0.00 3.07
394 396 6.066690 CCTTACAGGGATGTGATTTCATGAT 58.933 40.000 0.00 0.00 0.00 2.45
395 397 6.016527 CCTTACAGGGATGTGATTTCATGATG 60.017 42.308 0.00 0.00 0.00 3.07
396 398 5.120054 ACAGGGATGTGATTTCATGATGA 57.880 39.130 0.00 0.00 0.00 2.92
397 399 5.512298 ACAGGGATGTGATTTCATGATGAA 58.488 37.500 3.29 3.29 34.03 2.57
398 400 6.134055 ACAGGGATGTGATTTCATGATGAAT 58.866 36.000 8.90 0.00 36.11 2.57
399 401 6.610020 ACAGGGATGTGATTTCATGATGAATT 59.390 34.615 8.90 5.47 36.11 2.17
400 402 7.125204 ACAGGGATGTGATTTCATGATGAATTT 59.875 33.333 8.90 0.00 36.11 1.82
401 403 7.985184 CAGGGATGTGATTTCATGATGAATTTT 59.015 33.333 8.90 0.00 36.11 1.82
402 404 8.545472 AGGGATGTGATTTCATGATGAATTTTT 58.455 29.630 8.90 0.00 36.11 1.94
403 405 9.820725 GGGATGTGATTTCATGATGAATTTTTA 57.179 29.630 8.90 0.00 36.11 1.52
407 409 9.642327 TGTGATTTCATGATGAATTTTTACAGG 57.358 29.630 8.90 0.00 36.11 4.00
408 410 8.598075 GTGATTTCATGATGAATTTTTACAGGC 58.402 33.333 8.90 0.00 36.11 4.85
409 411 8.312564 TGATTTCATGATGAATTTTTACAGGCA 58.687 29.630 8.90 0.00 36.11 4.75
410 412 7.887996 TTTCATGATGAATTTTTACAGGCAC 57.112 32.000 8.90 0.00 36.11 5.01
411 413 6.839124 TCATGATGAATTTTTACAGGCACT 57.161 33.333 0.00 0.00 43.88 4.40
412 414 7.230849 TCATGATGAATTTTTACAGGCACTT 57.769 32.000 0.00 0.00 34.60 3.16
413 415 8.347004 TCATGATGAATTTTTACAGGCACTTA 57.653 30.769 0.00 0.00 34.60 2.24
414 416 8.461222 TCATGATGAATTTTTACAGGCACTTAG 58.539 33.333 0.00 0.00 34.60 2.18
415 417 7.994425 TGATGAATTTTTACAGGCACTTAGA 57.006 32.000 0.00 0.00 34.60 2.10
416 418 8.402798 TGATGAATTTTTACAGGCACTTAGAA 57.597 30.769 0.00 0.00 34.60 2.10
417 419 8.296713 TGATGAATTTTTACAGGCACTTAGAAC 58.703 33.333 0.00 0.00 34.60 3.01
418 420 7.817418 TGAATTTTTACAGGCACTTAGAACT 57.183 32.000 0.00 0.00 34.60 3.01
419 421 8.232913 TGAATTTTTACAGGCACTTAGAACTT 57.767 30.769 0.00 0.00 34.60 2.66
420 422 8.691797 TGAATTTTTACAGGCACTTAGAACTTT 58.308 29.630 0.00 0.00 34.60 2.66
421 423 9.529325 GAATTTTTACAGGCACTTAGAACTTTT 57.471 29.630 0.00 0.00 34.60 2.27
422 424 8.871686 ATTTTTACAGGCACTTAGAACTTTTG 57.128 30.769 0.00 0.00 34.60 2.44
423 425 7.399245 TTTTACAGGCACTTAGAACTTTTGT 57.601 32.000 0.00 0.00 34.60 2.83
424 426 6.613755 TTACAGGCACTTAGAACTTTTGTC 57.386 37.500 0.00 0.00 34.60 3.18
425 427 4.523083 ACAGGCACTTAGAACTTTTGTCA 58.477 39.130 0.00 0.00 34.60 3.58
426 428 4.947388 ACAGGCACTTAGAACTTTTGTCAA 59.053 37.500 0.00 0.00 34.60 3.18
427 429 5.594317 ACAGGCACTTAGAACTTTTGTCAAT 59.406 36.000 0.00 0.00 34.60 2.57
428 430 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
429 431 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
430 432 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
431 433 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
432 434 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
433 435 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
434 436 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
435 437 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
436 438 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
437 439 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
438 440 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
439 441 8.689972 AGAACTTTTGTCAATGTTTCTCTCAAT 58.310 29.630 6.10 0.00 31.96 2.57
440 442 9.305925 GAACTTTTGTCAATGTTTCTCTCAATT 57.694 29.630 6.10 0.00 31.96 2.32
441 443 9.657419 AACTTTTGTCAATGTTTCTCTCAATTT 57.343 25.926 0.00 0.00 28.24 1.82
442 444 9.657419 ACTTTTGTCAATGTTTCTCTCAATTTT 57.343 25.926 0.00 0.00 0.00 1.82
477 479 7.555639 TTTTTCGATTTTACTGTTTATGCGG 57.444 32.000 0.00 0.00 0.00 5.69
478 480 4.868450 TCGATTTTACTGTTTATGCGGG 57.132 40.909 0.00 0.00 0.00 6.13
479 481 4.505808 TCGATTTTACTGTTTATGCGGGA 58.494 39.130 0.00 0.00 0.00 5.14
480 482 4.569162 TCGATTTTACTGTTTATGCGGGAG 59.431 41.667 0.00 0.00 0.00 4.30
497 499 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
498 500 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
499 501 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
500 502 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
501 503 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
502 504 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
503 505 0.463295 ATGAGCTCGGGTGCAGAATG 60.463 55.000 9.64 0.00 40.87 2.67
504 506 1.817099 GAGCTCGGGTGCAGAATGG 60.817 63.158 0.00 0.00 35.86 3.16
505 507 2.244117 GAGCTCGGGTGCAGAATGGA 62.244 60.000 0.00 0.00 35.86 3.41
517 519 5.596836 TGCAGAATGGACTTTTCAAGTTT 57.403 34.783 0.00 0.00 38.22 2.66
518 520 6.707440 TGCAGAATGGACTTTTCAAGTTTA 57.293 33.333 0.00 0.00 38.22 2.01
519 521 7.288810 TGCAGAATGGACTTTTCAAGTTTAT 57.711 32.000 0.00 0.00 38.22 1.40
520 522 7.725251 TGCAGAATGGACTTTTCAAGTTTATT 58.275 30.769 0.00 0.00 38.22 1.40
521 523 7.867403 TGCAGAATGGACTTTTCAAGTTTATTC 59.133 33.333 13.51 13.51 40.53 1.75
522 524 8.084684 GCAGAATGGACTTTTCAAGTTTATTCT 58.915 33.333 16.04 16.04 45.23 2.40
527 529 9.753674 ATGGACTTTTCAAGTTTATTCTCCATA 57.246 29.630 0.00 0.00 43.03 2.74
566 568 0.738975 TAGAGTTGCCGATCGTCTGG 59.261 55.000 15.09 0.00 0.00 3.86
671 678 4.218312 AGAACTCCTTTCACCTTGCAAAT 58.782 39.130 0.00 0.00 36.57 2.32
731 863 9.131791 AGTTAATTTTCCAGTAGCTGAAAAGAA 57.868 29.630 13.23 8.49 32.44 2.52
733 865 9.965824 TTAATTTTCCAGTAGCTGAAAAGAAAG 57.034 29.630 13.23 0.00 32.44 2.62
734 866 7.823745 ATTTTCCAGTAGCTGAAAAGAAAGA 57.176 32.000 13.23 2.67 32.44 2.52
735 867 6.619801 TTTCCAGTAGCTGAAAAGAAAGAC 57.380 37.500 0.00 0.00 32.44 3.01
736 868 4.307432 TCCAGTAGCTGAAAAGAAAGACG 58.693 43.478 0.00 0.00 32.44 4.18
878 1014 2.315038 GACTCGCCGTCCGTCGTAAT 62.315 60.000 0.00 0.00 36.62 1.89
937 1073 6.020041 CGCTTATTTTCTCTCGGTTACCTAAC 60.020 42.308 0.00 0.00 35.50 2.34
978 1117 2.045045 TTTGGATCCCAGCGCCAG 60.045 61.111 9.90 0.00 33.81 4.85
1085 1224 1.144057 AGGTGAGCCCTAAATCGCG 59.856 57.895 0.00 0.00 43.87 5.87
1162 1301 0.107703 TGGAGCTTGTAGGCGATTGG 60.108 55.000 0.00 0.00 37.29 3.16
1180 1319 4.077184 CGCGGGGCTGAAGTGGTA 62.077 66.667 0.00 0.00 0.00 3.25
1293 1785 1.747355 GGAGATGGCATGGTTGTGAAG 59.253 52.381 3.81 0.00 0.00 3.02
1310 1802 2.000447 GAAGTTTCCTCACGGGATTCG 59.000 52.381 0.00 0.00 44.66 3.34
1515 2008 4.782019 ATTTCTTTGTGTGTGTGTGTGT 57.218 36.364 0.00 0.00 0.00 3.72
1516 2009 3.550950 TTCTTTGTGTGTGTGTGTGTG 57.449 42.857 0.00 0.00 0.00 3.82
1517 2010 2.499197 TCTTTGTGTGTGTGTGTGTGT 58.501 42.857 0.00 0.00 0.00 3.72
1518 2011 2.225255 TCTTTGTGTGTGTGTGTGTGTG 59.775 45.455 0.00 0.00 0.00 3.82
1589 2094 5.152934 GGTAGTATCTAATCTGGGGTGGAA 58.847 45.833 0.00 0.00 0.00 3.53
1590 2095 5.785940 GGTAGTATCTAATCTGGGGTGGAAT 59.214 44.000 0.00 0.00 0.00 3.01
1592 2097 6.441088 AGTATCTAATCTGGGGTGGAATTC 57.559 41.667 0.00 0.00 0.00 2.17
1601 2106 3.169908 TGGGGTGGAATTCTTTTTAGCC 58.830 45.455 5.23 6.23 0.00 3.93
1604 2109 4.011698 GGGTGGAATTCTTTTTAGCCGTA 58.988 43.478 5.23 0.00 0.00 4.02
1606 2111 4.436451 GGTGGAATTCTTTTTAGCCGTACG 60.436 45.833 8.69 8.69 0.00 3.67
1616 2121 3.300852 TTAGCCGTACGAACACATTGA 57.699 42.857 18.76 0.00 0.00 2.57
1644 2149 2.090831 AGGGCTGTAGATCTGGAGACAT 60.091 50.000 5.18 0.00 41.51 3.06
1657 2162 7.615039 ATCTGGAGACATCAGATGTTAAGAT 57.385 36.000 17.43 17.36 46.56 2.40
1659 2164 8.175925 TCTGGAGACATCAGATGTTAAGATAG 57.824 38.462 17.43 11.01 45.03 2.08
1660 2165 6.753180 TGGAGACATCAGATGTTAAGATAGC 58.247 40.000 17.43 2.27 45.03 2.97
1661 2166 6.162777 GGAGACATCAGATGTTAAGATAGCC 58.837 44.000 17.43 6.79 45.03 3.93
1662 2167 6.239430 GGAGACATCAGATGTTAAGATAGCCA 60.239 42.308 17.43 0.00 45.03 4.75
1663 2168 7.313740 AGACATCAGATGTTAAGATAGCCAT 57.686 36.000 17.43 0.00 45.03 4.40
1664 2169 7.743749 AGACATCAGATGTTAAGATAGCCATT 58.256 34.615 17.43 0.00 45.03 3.16
1665 2170 8.874156 AGACATCAGATGTTAAGATAGCCATTA 58.126 33.333 17.43 0.00 45.03 1.90
1666 2171 9.494271 GACATCAGATGTTAAGATAGCCATTAA 57.506 33.333 17.43 0.00 45.03 1.40
1667 2172 9.499479 ACATCAGATGTTAAGATAGCCATTAAG 57.501 33.333 10.53 0.00 41.63 1.85
1668 2173 9.716531 CATCAGATGTTAAGATAGCCATTAAGA 57.283 33.333 1.74 0.00 0.00 2.10
1670 2175 9.935241 TCAGATGTTAAGATAGCCATTAAGATC 57.065 33.333 6.68 6.68 39.84 2.75
1671 2176 9.716531 CAGATGTTAAGATAGCCATTAAGATCA 57.283 33.333 13.78 0.00 41.00 2.92
1672 2177 9.717942 AGATGTTAAGATAGCCATTAAGATCAC 57.282 33.333 13.78 0.00 41.00 3.06
1673 2178 8.854614 ATGTTAAGATAGCCATTAAGATCACC 57.145 34.615 0.00 0.00 0.00 4.02
1764 2269 5.394115 CCACTTTATAGGTTTGGCCATTCAC 60.394 44.000 6.09 3.66 40.61 3.18
1776 2281 3.960102 TGGCCATTCACCCTATTGAATTC 59.040 43.478 0.00 0.00 42.45 2.17
1795 2300 7.432059 TGAATTCAATGTTGATGTGCTTGTTA 58.568 30.769 5.45 0.00 37.00 2.41
2145 2660 5.064452 GTGTATGCTGAGGTTCTCTTTCATG 59.936 44.000 0.00 0.00 0.00 3.07
2288 2803 6.562228 AGTACCATAGGTCCATAGCTCAATA 58.438 40.000 0.00 0.00 37.09 1.90
2590 3113 5.912892 TGTGAACTATAATTCTCGATGGCA 58.087 37.500 0.00 0.00 0.00 4.92
2671 3200 5.738909 CAGACTTTTCTGTATGGACCAGAT 58.261 41.667 0.00 0.00 43.95 2.90
2691 3220 2.957491 ACTTCTTCTGGAGCATCGAG 57.043 50.000 0.00 0.00 42.88 4.04
3090 3623 9.770503 CATGTCATCTTTTCTCACTTATTCAAG 57.229 33.333 0.00 0.00 37.81 3.02
3289 3823 6.126863 AGTCCACATTCACTGGAAAATCTA 57.873 37.500 0.00 0.00 39.60 1.98
3360 3894 8.579850 TGCAGGTATTTTCATAGTTCATCTTT 57.420 30.769 0.00 0.00 0.00 2.52
3400 3934 2.798847 GCTTTTATTCTACTACCCGCCG 59.201 50.000 0.00 0.00 0.00 6.46
3456 3990 9.483916 TTTCTAACGAGAATGTTTGACTATTCA 57.516 29.630 0.00 0.00 41.40 2.57
3626 4160 4.443394 CACTTCTCAGCATTGCTTTGTTTC 59.557 41.667 8.83 0.00 36.40 2.78
4020 4554 6.202379 ACAATGAGATTAGATCAGTGATTGCG 59.798 38.462 7.16 0.00 43.54 4.85
4128 4662 7.834681 ACTTTTCTTCTAGGTCAGTTTTCCTTT 59.165 33.333 0.00 0.00 35.51 3.11
4129 4663 7.568199 TTTCTTCTAGGTCAGTTTTCCTTTG 57.432 36.000 0.00 0.00 35.51 2.77
4575 5109 6.012658 TCAAACATCTACAGCAAATTGTCC 57.987 37.500 0.00 0.00 32.56 4.02
4632 5166 0.605589 GGTGAACACAGGCTGGGTAC 60.606 60.000 24.95 18.37 28.95 3.34
4677 5211 4.833390 AGCTGGACAAGATTACCTACAAC 58.167 43.478 0.00 0.00 0.00 3.32
4721 5255 6.271391 TCCTGGATTCCCATAACGTATGTATT 59.729 38.462 0.00 0.00 42.59 1.89
4846 5380 3.202706 GAATTCCGGGCGTGCTCC 61.203 66.667 0.00 0.00 0.00 4.70
4893 5427 7.744087 TGTGTTAACAGAGCAAATTGTATCT 57.256 32.000 8.98 0.00 0.00 1.98
5209 5747 4.579869 ACCCACTACTTAACTTCATGCTG 58.420 43.478 0.00 0.00 0.00 4.41
5383 5962 1.920574 CGTGATAACAAGCACCTCTCG 59.079 52.381 0.00 0.00 0.00 4.04
5543 6122 6.019479 GCTAGTTTGATTGTCGGTGAGATAAG 60.019 42.308 0.00 0.00 33.46 1.73
5603 6194 3.112709 GACTTGAGTCGGCGTGCC 61.113 66.667 6.85 0.00 35.12 5.01
5700 6300 6.741992 ACACATATGTACAAACATGTCCTG 57.258 37.500 8.32 2.27 45.99 3.86
5942 6545 6.992123 TGATCGATAATACAATGTTGCTCCTT 59.008 34.615 0.00 0.00 0.00 3.36
5972 6575 1.229788 AGGAGGAAGGAAGCTGGCT 60.230 57.895 0.00 0.00 0.00 4.75
6110 6718 9.748708 GTATAATGGTAATGTTACAAGTCGGTA 57.251 33.333 5.38 0.00 35.37 4.02
6115 6723 4.877378 AATGTTACAAGTCGGTAGGTCA 57.123 40.909 0.00 0.00 0.00 4.02
6267 6877 3.038417 GAGTCGCGTGCAGTGCTT 61.038 61.111 17.60 0.00 0.00 3.91
6356 6967 3.043999 GCGGGTAGGTGAAGGGCAT 62.044 63.158 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.769512 ACAGATAAAGCCTAACTTGAGTCAA 58.230 36.000 5.25 5.25 39.09 3.18
129 131 1.070776 GCCGCGTCCGAATAAATTCTC 60.071 52.381 4.92 0.00 36.29 2.87
133 135 2.228138 TTAGCCGCGTCCGAATAAAT 57.772 45.000 4.92 0.00 36.29 1.40
141 143 2.202878 TGCAGATTAGCCGCGTCC 60.203 61.111 4.92 0.00 0.00 4.79
142 144 2.526120 GGTGCAGATTAGCCGCGTC 61.526 63.158 4.92 0.00 0.00 5.19
143 145 2.511600 GGTGCAGATTAGCCGCGT 60.512 61.111 4.92 0.00 0.00 6.01
144 146 3.272334 GGGTGCAGATTAGCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
147 149 1.889573 GCTCGGGTGCAGATTAGCC 60.890 63.158 0.00 0.00 0.00 3.93
148 150 0.878086 GAGCTCGGGTGCAGATTAGC 60.878 60.000 0.00 0.00 34.99 3.09
149 151 0.461548 TGAGCTCGGGTGCAGATTAG 59.538 55.000 9.64 0.00 34.99 1.73
150 152 0.175760 GTGAGCTCGGGTGCAGATTA 59.824 55.000 9.64 0.00 34.99 1.75
151 153 1.078848 GTGAGCTCGGGTGCAGATT 60.079 57.895 9.64 0.00 34.99 2.40
152 154 2.236223 CTGTGAGCTCGGGTGCAGAT 62.236 60.000 9.64 0.00 34.99 2.90
153 155 2.917227 TGTGAGCTCGGGTGCAGA 60.917 61.111 9.64 0.00 34.99 4.26
154 156 1.877576 TACTGTGAGCTCGGGTGCAG 61.878 60.000 9.64 13.43 34.99 4.41
155 157 1.468506 TTACTGTGAGCTCGGGTGCA 61.469 55.000 9.64 2.23 34.99 4.57
156 158 0.320421 TTTACTGTGAGCTCGGGTGC 60.320 55.000 9.64 0.00 0.00 5.01
157 159 2.163818 TTTTACTGTGAGCTCGGGTG 57.836 50.000 9.64 1.83 0.00 4.61
158 160 2.674177 CGATTTTACTGTGAGCTCGGGT 60.674 50.000 9.64 9.94 0.00 5.28
159 161 1.927174 CGATTTTACTGTGAGCTCGGG 59.073 52.381 9.64 4.08 0.00 5.14
160 162 2.876091 TCGATTTTACTGTGAGCTCGG 58.124 47.619 9.64 4.45 0.00 4.63
161 163 4.903638 TTTCGATTTTACTGTGAGCTCG 57.096 40.909 9.64 0.00 0.00 5.03
215 217 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
216 218 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
217 219 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
218 220 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
219 221 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
220 222 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
221 223 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
222 224 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
223 225 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
224 226 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
225 227 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
226 228 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
227 229 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
228 230 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
229 231 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
230 232 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
231 233 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
232 234 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
233 235 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
234 236 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
235 237 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
236 238 7.254084 CGAATTTTTGCAAGCACTTAGAACTTT 60.254 33.333 0.00 0.00 0.00 2.66
237 239 6.198966 CGAATTTTTGCAAGCACTTAGAACTT 59.801 34.615 0.00 0.00 0.00 2.66
238 240 5.687285 CGAATTTTTGCAAGCACTTAGAACT 59.313 36.000 0.00 0.00 0.00 3.01
239 241 5.458779 ACGAATTTTTGCAAGCACTTAGAAC 59.541 36.000 0.00 0.00 0.00 3.01
240 242 5.587289 ACGAATTTTTGCAAGCACTTAGAA 58.413 33.333 0.00 0.00 0.00 2.10
241 243 5.181690 ACGAATTTTTGCAAGCACTTAGA 57.818 34.783 0.00 0.00 0.00 2.10
242 244 4.975502 TGACGAATTTTTGCAAGCACTTAG 59.024 37.500 0.00 0.00 0.00 2.18
243 245 4.926244 TGACGAATTTTTGCAAGCACTTA 58.074 34.783 0.00 0.00 0.00 2.24
244 246 3.779759 TGACGAATTTTTGCAAGCACTT 58.220 36.364 0.00 0.00 0.00 3.16
245 247 3.435105 TGACGAATTTTTGCAAGCACT 57.565 38.095 0.00 0.00 0.00 4.40
246 248 3.735240 TCATGACGAATTTTTGCAAGCAC 59.265 39.130 0.00 0.00 0.00 4.40
247 249 3.974912 TCATGACGAATTTTTGCAAGCA 58.025 36.364 0.00 0.00 0.00 3.91
248 250 4.970472 TTCATGACGAATTTTTGCAAGC 57.030 36.364 0.00 0.00 0.00 4.01
249 251 7.005380 GTGATTTCATGACGAATTTTTGCAAG 58.995 34.615 0.00 0.00 32.32 4.01
250 252 6.478016 TGTGATTTCATGACGAATTTTTGCAA 59.522 30.769 0.00 0.00 32.32 4.08
251 253 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
252 254 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
253 255 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
254 256 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
255 257 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
256 258 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
257 259 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
258 260 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
259 261 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
260 262 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
261 263 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
262 264 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
263 265 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
264 266 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
265 267 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
266 268 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
267 269 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
268 270 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
269 271 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
270 272 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
271 273 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
272 274 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
273 275 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
274 276 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
275 277 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
276 278 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
277 279 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
278 280 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
296 298 8.708742 GCTTTTTCAGAGTACTGTTTTTGTTTT 58.291 29.630 0.00 0.00 43.81 2.43
297 299 8.088365 AGCTTTTTCAGAGTACTGTTTTTGTTT 58.912 29.630 0.00 0.00 43.81 2.83
298 300 7.602753 AGCTTTTTCAGAGTACTGTTTTTGTT 58.397 30.769 0.00 0.00 43.81 2.83
299 301 7.158099 AGCTTTTTCAGAGTACTGTTTTTGT 57.842 32.000 0.00 0.00 43.81 2.83
300 302 8.398665 AGTAGCTTTTTCAGAGTACTGTTTTTG 58.601 33.333 0.00 0.00 43.81 2.44
301 303 8.507524 AGTAGCTTTTTCAGAGTACTGTTTTT 57.492 30.769 0.00 0.00 43.81 1.94
302 304 8.507524 AAGTAGCTTTTTCAGAGTACTGTTTT 57.492 30.769 0.00 0.00 43.81 2.43
303 305 8.507524 AAAGTAGCTTTTTCAGAGTACTGTTT 57.492 30.769 0.00 0.00 36.62 2.83
304 306 7.769044 TGAAAGTAGCTTTTTCAGAGTACTGTT 59.231 33.333 17.30 0.00 39.05 3.16
305 307 7.272978 TGAAAGTAGCTTTTTCAGAGTACTGT 58.727 34.615 17.30 0.00 39.05 3.55
306 308 7.715265 TGAAAGTAGCTTTTTCAGAGTACTG 57.285 36.000 17.30 0.00 39.05 2.74
307 309 8.613482 GTTTGAAAGTAGCTTTTTCAGAGTACT 58.387 33.333 19.21 0.00 43.22 2.73
308 310 7.583040 CGTTTGAAAGTAGCTTTTTCAGAGTAC 59.417 37.037 19.21 15.67 43.22 2.73
309 311 7.254658 CCGTTTGAAAGTAGCTTTTTCAGAGTA 60.255 37.037 19.21 8.08 43.22 2.59
310 312 6.458342 CCGTTTGAAAGTAGCTTTTTCAGAGT 60.458 38.462 19.21 0.00 43.22 3.24
311 313 5.909610 CCGTTTGAAAGTAGCTTTTTCAGAG 59.090 40.000 19.21 15.45 43.22 3.35
312 314 5.587043 TCCGTTTGAAAGTAGCTTTTTCAGA 59.413 36.000 19.21 15.01 43.22 3.27
313 315 5.816919 TCCGTTTGAAAGTAGCTTTTTCAG 58.183 37.500 19.21 11.96 43.22 3.02
314 316 5.821516 TCCGTTTGAAAGTAGCTTTTTCA 57.178 34.783 17.30 17.30 41.40 2.69
315 317 7.694388 AAATCCGTTTGAAAGTAGCTTTTTC 57.306 32.000 13.56 13.56 33.49 2.29
329 331 3.963665 TCAGTGCTTCAAAATCCGTTTG 58.036 40.909 0.00 0.00 46.86 2.93
330 332 4.647424 TTCAGTGCTTCAAAATCCGTTT 57.353 36.364 0.00 0.00 0.00 3.60
331 333 4.853924 ATTCAGTGCTTCAAAATCCGTT 57.146 36.364 0.00 0.00 0.00 4.44
332 334 4.853924 AATTCAGTGCTTCAAAATCCGT 57.146 36.364 0.00 0.00 0.00 4.69
333 335 4.984161 ACAAATTCAGTGCTTCAAAATCCG 59.016 37.500 0.00 0.00 0.00 4.18
334 336 6.849588 AACAAATTCAGTGCTTCAAAATCC 57.150 33.333 0.00 0.00 0.00 3.01
371 373 6.769341 TCATCATGAAATCACATCCCTGTAAG 59.231 38.462 0.00 0.00 33.14 2.34
372 374 6.661777 TCATCATGAAATCACATCCCTGTAA 58.338 36.000 0.00 0.00 33.14 2.41
373 375 6.251255 TCATCATGAAATCACATCCCTGTA 57.749 37.500 0.00 0.00 33.14 2.74
374 376 5.120054 TCATCATGAAATCACATCCCTGT 57.880 39.130 0.00 0.00 35.44 4.00
375 377 6.650427 ATTCATCATGAAATCACATCCCTG 57.350 37.500 3.63 0.00 40.12 4.45
376 378 7.670605 AAATTCATCATGAAATCACATCCCT 57.329 32.000 3.63 0.00 40.12 4.20
377 379 8.726870 AAAAATTCATCATGAAATCACATCCC 57.273 30.769 3.63 0.00 40.12 3.85
381 383 9.642327 CCTGTAAAAATTCATCATGAAATCACA 57.358 29.630 3.63 4.23 40.12 3.58
382 384 8.598075 GCCTGTAAAAATTCATCATGAAATCAC 58.402 33.333 3.63 0.00 40.12 3.06
383 385 8.312564 TGCCTGTAAAAATTCATCATGAAATCA 58.687 29.630 3.63 0.00 40.12 2.57
384 386 8.598075 GTGCCTGTAAAAATTCATCATGAAATC 58.402 33.333 3.63 0.00 40.12 2.17
385 387 8.316214 AGTGCCTGTAAAAATTCATCATGAAAT 58.684 29.630 3.63 0.00 40.12 2.17
386 388 7.669427 AGTGCCTGTAAAAATTCATCATGAAA 58.331 30.769 3.63 0.00 40.12 2.69
387 389 7.230849 AGTGCCTGTAAAAATTCATCATGAA 57.769 32.000 1.59 1.59 41.09 2.57
388 390 6.839124 AGTGCCTGTAAAAATTCATCATGA 57.161 33.333 0.00 0.00 0.00 3.07
389 391 8.461222 TCTAAGTGCCTGTAAAAATTCATCATG 58.539 33.333 0.00 0.00 0.00 3.07
390 392 8.579850 TCTAAGTGCCTGTAAAAATTCATCAT 57.420 30.769 0.00 0.00 0.00 2.45
391 393 7.994425 TCTAAGTGCCTGTAAAAATTCATCA 57.006 32.000 0.00 0.00 0.00 3.07
392 394 8.515414 AGTTCTAAGTGCCTGTAAAAATTCATC 58.485 33.333 0.00 0.00 0.00 2.92
393 395 8.409358 AGTTCTAAGTGCCTGTAAAAATTCAT 57.591 30.769 0.00 0.00 0.00 2.57
394 396 7.817418 AGTTCTAAGTGCCTGTAAAAATTCA 57.183 32.000 0.00 0.00 0.00 2.57
395 397 9.529325 AAAAGTTCTAAGTGCCTGTAAAAATTC 57.471 29.630 0.00 0.00 0.00 2.17
396 398 9.313118 CAAAAGTTCTAAGTGCCTGTAAAAATT 57.687 29.630 0.00 0.00 0.00 1.82
397 399 8.474831 ACAAAAGTTCTAAGTGCCTGTAAAAAT 58.525 29.630 0.00 0.00 0.00 1.82
398 400 7.832769 ACAAAAGTTCTAAGTGCCTGTAAAAA 58.167 30.769 0.00 0.00 0.00 1.94
399 401 7.121463 TGACAAAAGTTCTAAGTGCCTGTAAAA 59.879 33.333 0.00 0.00 0.00 1.52
400 402 6.600032 TGACAAAAGTTCTAAGTGCCTGTAAA 59.400 34.615 0.00 0.00 0.00 2.01
401 403 6.116806 TGACAAAAGTTCTAAGTGCCTGTAA 58.883 36.000 0.00 0.00 0.00 2.41
402 404 5.676552 TGACAAAAGTTCTAAGTGCCTGTA 58.323 37.500 0.00 0.00 0.00 2.74
403 405 4.523083 TGACAAAAGTTCTAAGTGCCTGT 58.477 39.130 0.00 0.00 0.00 4.00
404 406 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
405 407 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
406 408 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
407 409 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
408 410 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
409 411 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
410 412 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
411 413 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
412 414 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
413 415 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
414 416 8.862550 ATTGAGAGAAACATTGACAAAAGTTC 57.137 30.769 9.09 5.33 0.00 3.01
415 417 9.657419 AAATTGAGAGAAACATTGACAAAAGTT 57.343 25.926 0.00 0.00 0.00 2.66
416 418 9.657419 AAAATTGAGAGAAACATTGACAAAAGT 57.343 25.926 0.00 0.00 0.00 2.66
453 455 6.583050 CCCGCATAAACAGTAAAATCGAAAAA 59.417 34.615 0.00 0.00 0.00 1.94
454 456 6.072618 TCCCGCATAAACAGTAAAATCGAAAA 60.073 34.615 0.00 0.00 0.00 2.29
455 457 5.411977 TCCCGCATAAACAGTAAAATCGAAA 59.588 36.000 0.00 0.00 0.00 3.46
456 458 4.936411 TCCCGCATAAACAGTAAAATCGAA 59.064 37.500 0.00 0.00 0.00 3.71
457 459 4.505808 TCCCGCATAAACAGTAAAATCGA 58.494 39.130 0.00 0.00 0.00 3.59
458 460 4.785341 GCTCCCGCATAAACAGTAAAATCG 60.785 45.833 0.00 0.00 35.78 3.34
459 461 4.095782 TGCTCCCGCATAAACAGTAAAATC 59.904 41.667 0.00 0.00 42.25 2.17
460 462 4.013728 TGCTCCCGCATAAACAGTAAAAT 58.986 39.130 0.00 0.00 42.25 1.82
461 463 3.413327 TGCTCCCGCATAAACAGTAAAA 58.587 40.909 0.00 0.00 42.25 1.52
462 464 3.060736 TGCTCCCGCATAAACAGTAAA 57.939 42.857 0.00 0.00 42.25 2.01
463 465 2.772077 TGCTCCCGCATAAACAGTAA 57.228 45.000 0.00 0.00 42.25 2.24
480 482 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
481 483 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
482 484 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
483 485 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
484 486 0.463295 CATTCTGCACCCGAGCTCAT 60.463 55.000 15.40 0.00 34.99 2.90
485 487 1.078918 CATTCTGCACCCGAGCTCA 60.079 57.895 15.40 0.00 34.99 4.26
486 488 1.817099 CCATTCTGCACCCGAGCTC 60.817 63.158 2.73 2.73 34.99 4.09
487 489 2.270205 CCATTCTGCACCCGAGCT 59.730 61.111 0.00 0.00 34.99 4.09
488 490 2.109126 GTCCATTCTGCACCCGAGC 61.109 63.158 0.00 0.00 0.00 5.03
489 491 0.036010 AAGTCCATTCTGCACCCGAG 60.036 55.000 0.00 0.00 0.00 4.63
490 492 0.400213 AAAGTCCATTCTGCACCCGA 59.600 50.000 0.00 0.00 0.00 5.14
491 493 1.200020 GAAAAGTCCATTCTGCACCCG 59.800 52.381 0.00 0.00 0.00 5.28
492 494 2.238521 TGAAAAGTCCATTCTGCACCC 58.761 47.619 0.00 0.00 0.00 4.61
493 495 3.905784 CTTGAAAAGTCCATTCTGCACC 58.094 45.455 0.00 0.00 39.70 5.01
513 515 9.853177 CCCTAGTCAATTTATGGAGAATAAACT 57.147 33.333 0.00 0.00 42.22 2.66
514 516 9.847224 TCCCTAGTCAATTTATGGAGAATAAAC 57.153 33.333 0.00 0.00 42.22 2.01
517 519 9.392506 TGATCCCTAGTCAATTTATGGAGAATA 57.607 33.333 0.00 0.00 0.00 1.75
518 520 8.280258 TGATCCCTAGTCAATTTATGGAGAAT 57.720 34.615 0.00 0.00 0.00 2.40
519 521 7.568738 TCTGATCCCTAGTCAATTTATGGAGAA 59.431 37.037 0.00 0.00 0.00 2.87
520 522 7.075797 TCTGATCCCTAGTCAATTTATGGAGA 58.924 38.462 0.00 0.00 0.00 3.71
521 523 7.308450 TCTGATCCCTAGTCAATTTATGGAG 57.692 40.000 0.00 0.00 0.00 3.86
522 524 7.690454 TTCTGATCCCTAGTCAATTTATGGA 57.310 36.000 0.00 0.00 0.00 3.41
527 529 8.560124 ACTCTATTCTGATCCCTAGTCAATTT 57.440 34.615 0.00 0.00 0.00 1.82
529 531 7.472663 GCAACTCTATTCTGATCCCTAGTCAAT 60.473 40.741 0.00 0.00 0.00 2.57
566 568 6.988109 ACACTCGATACGACTATAATTTGC 57.012 37.500 0.00 0.00 0.00 3.68
607 609 3.073650 ACAGTCAAAAGCCAGAAGATCCT 59.926 43.478 0.00 0.00 0.00 3.24
608 610 3.416156 ACAGTCAAAAGCCAGAAGATCC 58.584 45.455 0.00 0.00 0.00 3.36
650 657 4.590850 ATTTGCAAGGTGAAAGGAGTTC 57.409 40.909 0.00 0.00 36.70 3.01
661 668 7.552459 AGGCGTATAAATTTTATTTGCAAGGT 58.448 30.769 18.80 0.00 0.00 3.50
731 863 6.151144 CCATTTAGGTTGGAAAGATTCGTCTT 59.849 38.462 0.00 0.00 36.26 3.01
733 865 5.676331 GCCATTTAGGTTGGAAAGATTCGTC 60.676 44.000 0.00 0.00 40.61 4.20
734 866 4.157840 GCCATTTAGGTTGGAAAGATTCGT 59.842 41.667 0.00 0.00 40.61 3.85
735 867 4.399303 AGCCATTTAGGTTGGAAAGATTCG 59.601 41.667 0.00 0.00 40.61 3.34
736 868 5.921962 AGCCATTTAGGTTGGAAAGATTC 57.078 39.130 0.00 0.00 40.61 2.52
878 1014 3.077907 CAAAAGGGCCTCTCCGGA 58.922 61.111 6.46 2.93 34.94 5.14
937 1073 1.972660 AATCGGAGGAGGGGCGAAAG 61.973 60.000 0.00 0.00 0.00 2.62
959 1098 3.140814 GGCGCTGGGATCCAAACC 61.141 66.667 15.23 3.38 30.80 3.27
978 1117 1.153369 TACAGCATCCGCCAAGCTC 60.153 57.895 0.00 0.00 39.83 4.09
1120 1259 1.754234 GCACCCAAGGAATCCGCAT 60.754 57.895 0.00 0.00 0.00 4.73
1180 1319 2.192175 CCTAAAATCCCCGCCGCT 59.808 61.111 0.00 0.00 0.00 5.52
1310 1802 4.321974 CCCTCAAATAAGAAAAGGCACACC 60.322 45.833 0.00 0.00 0.00 4.16
1381 1874 5.923733 TTGACAACAATAACCAACCAAGT 57.076 34.783 0.00 0.00 0.00 3.16
1482 1975 4.226761 CACAAAGAAATTAGCCACGGTTC 58.773 43.478 0.00 0.00 0.00 3.62
1515 2008 1.059584 AGATCCCCACCACACACACA 61.060 55.000 0.00 0.00 0.00 3.72
1516 2009 0.981183 TAGATCCCCACCACACACAC 59.019 55.000 0.00 0.00 0.00 3.82
1517 2010 1.559219 CATAGATCCCCACCACACACA 59.441 52.381 0.00 0.00 0.00 3.72
1518 2011 1.134098 CCATAGATCCCCACCACACAC 60.134 57.143 0.00 0.00 0.00 3.82
1589 2094 4.751098 TGTGTTCGTACGGCTAAAAAGAAT 59.249 37.500 16.52 0.00 0.00 2.40
1590 2095 4.118410 TGTGTTCGTACGGCTAAAAAGAA 58.882 39.130 16.52 0.00 0.00 2.52
1592 2097 4.657075 ATGTGTTCGTACGGCTAAAAAG 57.343 40.909 16.52 0.00 0.00 2.27
1601 2106 5.448926 TCATTCATCAATGTGTTCGTACG 57.551 39.130 9.53 9.53 40.47 3.67
1604 2109 3.691118 CCCTCATTCATCAATGTGTTCGT 59.309 43.478 0.00 0.00 40.47 3.85
1606 2111 3.698040 AGCCCTCATTCATCAATGTGTTC 59.302 43.478 0.00 0.00 40.47 3.18
1616 2121 3.327172 CCAGATCTACAGCCCTCATTCAT 59.673 47.826 0.00 0.00 0.00 2.57
1644 2149 9.935241 GATCTTAATGGCTATCTTAACATCTGA 57.065 33.333 0.00 0.00 0.00 3.27
1653 2158 4.593206 TCCGGTGATCTTAATGGCTATCTT 59.407 41.667 0.00 0.00 0.00 2.40
1654 2159 4.160329 TCCGGTGATCTTAATGGCTATCT 58.840 43.478 0.00 0.00 0.00 1.98
1655 2160 4.537135 TCCGGTGATCTTAATGGCTATC 57.463 45.455 0.00 0.00 0.00 2.08
1657 2162 4.974645 AATCCGGTGATCTTAATGGCTA 57.025 40.909 0.00 0.00 0.00 3.93
1659 2164 4.137543 AGAAATCCGGTGATCTTAATGGC 58.862 43.478 0.00 0.00 0.00 4.40
1660 2165 5.468072 CAGAGAAATCCGGTGATCTTAATGG 59.532 44.000 0.00 0.00 0.00 3.16
1661 2166 6.051717 ACAGAGAAATCCGGTGATCTTAATG 58.948 40.000 0.00 6.82 0.00 1.90
1662 2167 6.240549 ACAGAGAAATCCGGTGATCTTAAT 57.759 37.500 0.00 0.00 0.00 1.40
1663 2168 5.677319 ACAGAGAAATCCGGTGATCTTAA 57.323 39.130 0.00 0.00 0.00 1.85
1664 2169 5.046591 ACAACAGAGAAATCCGGTGATCTTA 60.047 40.000 0.00 0.00 0.00 2.10
1665 2170 4.256920 CAACAGAGAAATCCGGTGATCTT 58.743 43.478 0.00 0.00 0.00 2.40
1666 2171 3.261897 ACAACAGAGAAATCCGGTGATCT 59.738 43.478 0.00 3.08 0.00 2.75
1667 2172 3.600388 ACAACAGAGAAATCCGGTGATC 58.400 45.455 0.00 0.00 0.00 2.92
1668 2173 3.703001 ACAACAGAGAAATCCGGTGAT 57.297 42.857 0.00 0.00 0.00 3.06
1669 2174 4.819105 ATACAACAGAGAAATCCGGTGA 57.181 40.909 0.00 0.00 0.00 4.02
1670 2175 5.178797 AGAATACAACAGAGAAATCCGGTG 58.821 41.667 0.00 0.00 0.00 4.94
1671 2176 5.422214 AGAATACAACAGAGAAATCCGGT 57.578 39.130 0.00 0.00 0.00 5.28
1672 2177 5.065218 CCAAGAATACAACAGAGAAATCCGG 59.935 44.000 0.00 0.00 0.00 5.14
1673 2178 5.065218 CCCAAGAATACAACAGAGAAATCCG 59.935 44.000 0.00 0.00 0.00 4.18
1764 2269 6.477688 GCACATCAACATTGAATTCAATAGGG 59.522 38.462 28.61 20.21 44.10 3.53
1795 2300 8.815565 ACTCAAGGATCGATCATGTATAGTAT 57.184 34.615 25.93 0.00 0.00 2.12
2145 2660 1.831580 AGTGAAGCAGCATTCTTCCC 58.168 50.000 0.00 0.33 37.57 3.97
2288 2803 8.560903 AGATCAACCCCAGAAAAAGTAAGATAT 58.439 33.333 0.00 0.00 0.00 1.63
2610 3139 6.015688 AGTCAGTGCATTTGAATCTTGACATT 60.016 34.615 5.56 0.00 0.00 2.71
2671 3200 3.129462 CACTCGATGCTCCAGAAGAAGTA 59.871 47.826 0.00 0.00 0.00 2.24
2691 3220 2.472695 TACATTGCCCTCAGTGTCAC 57.527 50.000 0.00 0.00 41.42 3.67
3090 3623 7.250569 TGCAGCTTCTAGTATTTTGCATTAAC 58.749 34.615 0.00 0.00 35.41 2.01
3289 3823 9.809096 CGTCTGATGCCTATTCAAATATAGTAT 57.191 33.333 0.00 0.00 0.00 2.12
3360 3894 7.466746 AAAAGCCAGACAAAATGCTATAAGA 57.533 32.000 0.00 0.00 32.82 2.10
3626 4160 4.946157 ACATCAAGAATAGCACCTGGAAAG 59.054 41.667 0.00 0.00 0.00 2.62
3819 4353 6.046593 CCATGTTAGTAAAGTTCTGCGGATA 58.953 40.000 0.00 0.00 0.00 2.59
4020 4554 6.147656 CCAAGAAGCACCCAACAAATTTTATC 59.852 38.462 0.00 0.00 0.00 1.75
4128 4662 5.031066 AGCAAACTCACTAACTGTTACCA 57.969 39.130 0.00 0.00 0.00 3.25
4129 4663 6.221659 ACTAGCAAACTCACTAACTGTTACC 58.778 40.000 0.00 0.00 0.00 2.85
4192 4726 3.814842 TCATAACCTGCACACAAGACAAG 59.185 43.478 0.00 0.00 0.00 3.16
4194 4728 3.483808 TCATAACCTGCACACAAGACA 57.516 42.857 0.00 0.00 0.00 3.41
4632 5166 8.580720 AGCTTATAGATGTACTCATACCACAAG 58.419 37.037 0.00 0.00 34.06 3.16
4677 5211 5.065914 CAGGATGTGTAGGGATGGTATTTG 58.934 45.833 0.00 0.00 0.00 2.32
4721 5255 7.789273 TTTATACTCGACACAAACAGGAAAA 57.211 32.000 0.00 0.00 0.00 2.29
5000 5538 2.437281 CCTGAGCCAGATATGGAACTGT 59.563 50.000 11.49 0.00 32.44 3.55
5097 5635 9.640974 CATCAAAGCAAACAAAATAAGTTTCAG 57.359 29.630 0.00 0.00 37.10 3.02
5209 5747 3.736252 CCGCAACATATAGTGCAGTAGTC 59.264 47.826 7.45 0.00 0.00 2.59
5218 5756 5.303589 AGGTGTACATACCGCAACATATAGT 59.696 40.000 0.00 0.00 45.56 2.12
5383 5962 4.165779 CAATCCCTGCGACAAAATTGTAC 58.834 43.478 0.00 0.00 42.43 2.90
5500 6079 6.869206 ACTAGCTTTGTTGATACCCTAGAA 57.131 37.500 0.00 0.00 0.00 2.10
5543 6122 3.022287 CGGTGTGCCTGTTGACAC 58.978 61.111 0.00 0.00 41.52 3.67
5603 6194 3.057734 ACTCTTCAAGACTAAAACGCGG 58.942 45.455 12.47 0.00 0.00 6.46
5605 6196 6.520792 TTACACTCTTCAAGACTAAAACGC 57.479 37.500 0.00 0.00 0.00 4.84
5700 6300 2.552315 ACAATCACGACCAACAATGTCC 59.448 45.455 0.00 0.00 0.00 4.02
5709 6309 3.124466 CGCAAGAATTACAATCACGACCA 59.876 43.478 0.00 0.00 43.02 4.02
5850 6453 1.324740 CCGAACCTGGGTATGTCCGA 61.325 60.000 0.00 0.00 37.00 4.55
5942 6545 2.392662 CTTCCTCCTCCATACAGCTCA 58.607 52.381 0.00 0.00 0.00 4.26
5972 6575 1.500783 AAGGAGCAGCCCAAGCCTTA 61.501 55.000 0.00 0.00 41.25 2.69
6087 6695 7.093377 ACCTACCGACTTGTAACATTACCATTA 60.093 37.037 0.00 0.00 32.72 1.90
6110 6718 1.549170 GGACACCGACAATACTGACCT 59.451 52.381 0.00 0.00 0.00 3.85
6207 6817 1.772063 GACAAGACGGCGCACAGTTT 61.772 55.000 10.83 0.00 0.00 2.66
6208 6818 2.203015 ACAAGACGGCGCACAGTT 60.203 55.556 10.83 0.00 0.00 3.16
6267 6877 0.320073 CAAGCGGTAACCTGACGGAA 60.320 55.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.