Multiple sequence alignment - TraesCS4D01G181300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G181300 chr4D 100.000 2892 0 0 1 2892 317182481 317179590 0.000000e+00 5341
1 TraesCS4D01G181300 chr4A 96.194 1340 30 8 763 2100 157691768 157693088 0.000000e+00 2172
2 TraesCS4D01G181300 chr4A 93.519 540 28 2 2359 2892 157693277 157693815 0.000000e+00 797
3 TraesCS4D01G181300 chr4A 86.131 274 19 13 3 270 157573147 157573407 7.890000e-71 278
4 TraesCS4D01G181300 chr4A 96.190 105 4 0 265 369 157691665 157691769 3.830000e-39 172
5 TraesCS4D01G181300 chr4B 95.714 1330 40 7 763 2091 394376737 394375424 0.000000e+00 2124
6 TraesCS4D01G181300 chr4B 96.931 391 11 1 2358 2748 394363548 394363159 0.000000e+00 654
7 TraesCS4D01G181300 chr4B 89.781 411 24 6 368 764 617623477 617623883 7.150000e-141 510
8 TraesCS4D01G181300 chr4B 89.563 412 25 6 368 765 617389858 617390265 9.250000e-140 507
9 TraesCS4D01G181300 chr4B 89.544 373 28 8 3 369 394377103 394376736 2.030000e-126 462
10 TraesCS4D01G181300 chr4B 84.819 415 41 14 368 765 19201361 19201770 5.810000e-107 398
11 TraesCS4D01G181300 chr4B 84.300 414 45 12 368 765 18971986 18971577 1.260000e-103 387
12 TraesCS4D01G181300 chr4B 84.058 414 46 12 368 765 19085737 19086146 5.850000e-102 381
13 TraesCS4D01G181300 chr4B 94.211 190 10 1 2145 2333 394363727 394363538 3.650000e-74 289
14 TraesCS4D01G181300 chr4B 90.741 162 9 2 2737 2892 394356439 394356278 8.120000e-51 211
15 TraesCS4D01G181300 chr1A 89.294 411 26 6 368 764 531325138 531325544 1.550000e-137 499
16 TraesCS4D01G181300 chrUn 84.300 414 45 12 368 765 52408058 52408467 1.260000e-103 387
17 TraesCS4D01G181300 chr7B 83.902 410 41 19 368 765 562376104 562376500 4.550000e-98 368
18 TraesCS4D01G181300 chr2A 93.590 234 15 0 368 601 39243112 39242879 1.650000e-92 350
19 TraesCS4D01G181300 chr2A 93.651 126 6 2 642 765 39242573 39242448 1.370000e-43 187
20 TraesCS4D01G181300 chr5A 85.845 219 13 7 563 767 407934025 407933811 1.750000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G181300 chr4D 317179590 317182481 2891 True 5341.0 5341 100.0000 1 2892 1 chr4D.!!$R1 2891
1 TraesCS4D01G181300 chr4A 157691665 157693815 2150 False 1047.0 2172 95.3010 265 2892 3 chr4A.!!$F2 2627
2 TraesCS4D01G181300 chr4B 394375424 394377103 1679 True 1293.0 2124 92.6290 3 2091 2 chr4B.!!$R4 2088
3 TraesCS4D01G181300 chr4B 394363159 394363727 568 True 471.5 654 95.5710 2145 2748 2 chr4B.!!$R3 603
4 TraesCS4D01G181300 chr2A 39242448 39243112 664 True 268.5 350 93.6205 368 765 2 chr2A.!!$R1 397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.178987 ACAGGACGGAGAGAGTGTGT 60.179 55.0 0.0 0.0 0.0 3.72 F
392 399 0.392060 CTCCGTCCGGGTTTAAAGGG 60.392 60.0 0.0 0.0 37.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1680 1963 1.820519 GCAAGCAACATCCATCCAAGA 59.179 47.619 0.0 0.0 0.00 3.02 R
2178 2461 2.230940 CGTGCGGTAATCGAGGCTG 61.231 63.158 0.0 0.0 42.43 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 6.365970 TGCAATAAAGAAGAGAGGAGAGTT 57.634 37.500 0.00 0.00 0.00 3.01
106 107 0.178987 ACAGGACGGAGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
112 113 0.946221 CGGAGAGAGTGTGTGCCAAC 60.946 60.000 0.00 0.00 0.00 3.77
119 120 1.742831 GAGTGTGTGCCAACTGACAAA 59.257 47.619 0.00 0.00 0.00 2.83
123 129 2.297315 TGTGTGCCAACTGACAAAAACA 59.703 40.909 0.00 0.00 0.00 2.83
132 138 5.743872 CCAACTGACAAAAACAGTAAGAAGC 59.256 40.000 0.00 0.00 46.01 3.86
152 158 1.328680 CATCACGTGGCTAATCTGCAC 59.671 52.381 17.00 0.00 34.04 4.57
186 192 3.330110 TGAACCCGGGGATAAACAGTAAA 59.670 43.478 27.92 0.00 0.00 2.01
188 194 4.385478 ACCCGGGGATAAACAGTAAAAA 57.615 40.909 27.92 0.00 0.00 1.94
189 195 4.938028 ACCCGGGGATAAACAGTAAAAAT 58.062 39.130 27.92 0.00 0.00 1.82
190 196 4.951715 ACCCGGGGATAAACAGTAAAAATC 59.048 41.667 27.92 0.00 0.00 2.17
191 197 4.951094 CCCGGGGATAAACAGTAAAAATCA 59.049 41.667 14.71 0.00 0.00 2.57
195 201 6.072397 CGGGGATAAACAGTAAAAATCACACA 60.072 38.462 0.00 0.00 0.00 3.72
250 256 0.445436 CGTGCAAGATGCTCCTGTTC 59.555 55.000 3.78 0.00 45.31 3.18
251 257 1.527034 GTGCAAGATGCTCCTGTTCA 58.473 50.000 3.78 0.00 45.31 3.18
392 399 0.392060 CTCCGTCCGGGTTTAAAGGG 60.392 60.000 0.00 0.00 37.00 3.95
397 404 1.379443 CCGGGTTTAAAGGGCCTCC 60.379 63.158 6.46 2.34 0.00 4.30
432 439 1.093496 GTCCCGAATTGTAAGGCCGG 61.093 60.000 0.00 0.00 39.85 6.13
458 465 2.083774 CTAAACCTGCTCCAATCGCAA 58.916 47.619 0.00 0.00 36.88 4.85
501 508 0.455410 TGCCATGCCTTGTTAATCGC 59.545 50.000 0.00 0.00 0.00 4.58
513 520 2.997303 TGTTAATCGCGTGTGCAGTTAT 59.003 40.909 5.77 0.00 42.97 1.89
580 587 2.644992 CCAGCCGTGCCTTGTTTC 59.355 61.111 0.00 0.00 0.00 2.78
584 591 1.661509 GCCGTGCCTTGTTTCTTGC 60.662 57.895 0.00 0.00 0.00 4.01
587 594 0.657368 CGTGCCTTGTTTCTTGCGTC 60.657 55.000 0.00 0.00 0.00 5.19
597 604 1.803334 TTCTTGCGTCGGCTGTTTAT 58.197 45.000 0.00 0.00 40.82 1.40
626 890 2.276868 GCGCGCATGTAACTGCTG 60.277 61.111 29.10 0.00 40.06 4.41
642 906 1.982073 GCTGCTGCGGCTCGTTAATT 61.982 55.000 25.48 0.00 39.59 1.40
660 937 6.535508 CGTTAATTTAGCTAGAACAGAGCCTT 59.464 38.462 0.00 0.00 41.06 4.35
701 979 7.325579 CAGCTGTAATTTTCAAGCTCTTCTTTC 59.674 37.037 5.25 0.00 31.27 2.62
733 1011 4.508662 CTTGGTCCTATCAAAGTGGTCTC 58.491 47.826 0.00 0.00 0.00 3.36
747 1025 3.200165 AGTGGTCTCTGGGCCTAATAAAC 59.800 47.826 4.53 0.00 0.00 2.01
790 1068 9.399403 GATGACAAAAGAAATCAGGTTTACTTC 57.601 33.333 0.00 0.00 0.00 3.01
932 1211 6.206042 AGTAAAATATCTCCTGGAGTCTGGT 58.794 40.000 22.50 8.34 34.13 4.00
933 1212 7.363031 AGTAAAATATCTCCTGGAGTCTGGTA 58.637 38.462 22.50 3.27 34.13 3.25
934 1213 6.739331 AAAATATCTCCTGGAGTCTGGTAG 57.261 41.667 22.50 0.00 34.13 3.18
935 1214 5.411103 AATATCTCCTGGAGTCTGGTAGT 57.589 43.478 22.50 6.75 34.13 2.73
936 1215 6.532119 AATATCTCCTGGAGTCTGGTAGTA 57.468 41.667 22.50 1.01 34.13 1.82
937 1216 3.648507 TCTCCTGGAGTCTGGTAGTAC 57.351 52.381 22.50 0.00 34.13 2.73
999 1278 2.719354 GACCACACACGGCAAACC 59.281 61.111 0.00 0.00 0.00 3.27
1421 1700 4.250464 TCAAATCTTACCGTGCTTACTGG 58.750 43.478 0.00 0.00 0.00 4.00
1631 1914 5.536538 ACCAGAGCAATCTCAATCTCGTATA 59.463 40.000 0.00 0.00 41.81 1.47
1632 1915 6.092092 CCAGAGCAATCTCAATCTCGTATAG 58.908 44.000 0.00 0.00 41.81 1.31
1633 1916 6.294453 CCAGAGCAATCTCAATCTCGTATAGT 60.294 42.308 0.00 0.00 41.81 2.12
1634 1917 7.094592 CCAGAGCAATCTCAATCTCGTATAGTA 60.095 40.741 0.00 0.00 41.81 1.82
1635 1918 8.458052 CAGAGCAATCTCAATCTCGTATAGTAT 58.542 37.037 0.00 0.00 41.81 2.12
1676 1959 6.405278 TGAGAAACAGTGTGATCTTACAGA 57.595 37.500 11.86 0.00 0.00 3.41
1680 1963 7.275920 AGAAACAGTGTGATCTTACAGAGTTT 58.724 34.615 0.00 12.13 39.43 2.66
1981 2264 6.250819 CAGCGAGATTTTGTTTCGATGTATT 58.749 36.000 3.53 0.00 43.39 1.89
2074 2357 9.165035 GGAAAATGAAATGGAATAATTTCTGCA 57.835 29.630 10.14 0.00 43.81 4.41
2100 2383 7.838771 TTTGGATATGCGAGATGAGAATATG 57.161 36.000 0.00 0.00 0.00 1.78
2101 2384 6.780457 TGGATATGCGAGATGAGAATATGA 57.220 37.500 0.00 0.00 0.00 2.15
2102 2385 7.174107 TGGATATGCGAGATGAGAATATGAA 57.826 36.000 0.00 0.00 0.00 2.57
2104 2387 8.917088 TGGATATGCGAGATGAGAATATGAATA 58.083 33.333 0.00 0.00 0.00 1.75
2109 2392 9.926158 ATGCGAGATGAGAATATGAATATATCC 57.074 33.333 0.00 0.00 0.00 2.59
2110 2393 8.363390 TGCGAGATGAGAATATGAATATATCCC 58.637 37.037 0.00 0.00 0.00 3.85
2111 2394 7.816995 GCGAGATGAGAATATGAATATATCCCC 59.183 40.741 0.00 0.00 0.00 4.81
2112 2395 8.310382 CGAGATGAGAATATGAATATATCCCCC 58.690 40.741 0.00 0.00 0.00 5.40
2231 2514 1.342555 CGCGTCGAATTGTGGTTAGA 58.657 50.000 0.00 0.00 0.00 2.10
2332 2619 0.165944 CCTTCGTTCGGCACAATGAC 59.834 55.000 0.00 0.00 0.00 3.06
2333 2620 0.865111 CTTCGTTCGGCACAATGACA 59.135 50.000 0.00 0.00 0.00 3.58
2334 2621 1.464608 CTTCGTTCGGCACAATGACAT 59.535 47.619 0.00 0.00 0.00 3.06
2335 2622 1.518325 TCGTTCGGCACAATGACATT 58.482 45.000 0.00 0.00 0.00 2.71
2336 2623 1.876799 TCGTTCGGCACAATGACATTT 59.123 42.857 0.00 0.00 0.00 2.32
2337 2624 2.292016 TCGTTCGGCACAATGACATTTT 59.708 40.909 0.00 0.00 0.00 1.82
2338 2625 3.049206 CGTTCGGCACAATGACATTTTT 58.951 40.909 0.00 0.00 0.00 1.94
2416 2703 5.402867 GCATAACATTCTCGGACTACTAAGC 59.597 44.000 0.00 0.00 0.00 3.09
2516 2803 1.378531 GCACGGATGTTGCTTATGGA 58.621 50.000 0.00 0.00 0.00 3.41
2578 2865 1.825474 GTGACTGAGTTAGGCCTAGCA 59.175 52.381 26.35 17.75 31.29 3.49
2675 2962 1.076412 TCTTGTTTGGTGGCCTGCA 60.076 52.632 3.32 0.00 0.00 4.41
2715 3002 4.895224 TTACACGTTGTTTGGTTGCATA 57.105 36.364 0.00 0.00 0.00 3.14
2797 3084 2.330216 AGGCATAGGTCTATTCGCCTT 58.670 47.619 13.11 2.72 40.15 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.957266 CACAAGACGTCGGTGCTA 57.043 55.556 23.74 0.00 0.00 3.49
53 54 9.898152 CCATTTAACTCTCCTCTCTTCTTTATT 57.102 33.333 0.00 0.00 0.00 1.40
55 56 7.581658 GCCCATTTAACTCTCCTCTCTTCTTTA 60.582 40.741 0.00 0.00 0.00 1.85
56 57 6.716284 CCCATTTAACTCTCCTCTCTTCTTT 58.284 40.000 0.00 0.00 0.00 2.52
66 67 2.293170 GCTCAGCCCATTTAACTCTCC 58.707 52.381 0.00 0.00 0.00 3.71
67 68 2.680339 GTGCTCAGCCCATTTAACTCTC 59.320 50.000 0.00 0.00 0.00 3.20
73 74 0.991146 TCCTGTGCTCAGCCCATTTA 59.009 50.000 10.32 0.00 40.09 1.40
78 79 4.767255 CCGTCCTGTGCTCAGCCC 62.767 72.222 10.32 2.05 40.09 5.19
106 107 4.702612 TCTTACTGTTTTTGTCAGTTGGCA 59.297 37.500 3.98 0.00 42.50 4.92
112 113 6.634436 GTGATGCTTCTTACTGTTTTTGTCAG 59.366 38.462 0.88 0.00 38.68 3.51
119 120 3.498397 CCACGTGATGCTTCTTACTGTTT 59.502 43.478 19.30 0.00 0.00 2.83
123 129 1.276421 AGCCACGTGATGCTTCTTACT 59.724 47.619 19.30 0.00 32.94 2.24
132 138 1.328680 GTGCAGATTAGCCACGTGATG 59.671 52.381 19.30 1.58 0.00 3.07
152 158 3.603365 GGTTCATTTGAGCCCGGG 58.397 61.111 19.09 19.09 39.22 5.73
250 256 4.236147 TCAATTTTTGCACGGACATCATG 58.764 39.130 0.00 0.00 0.00 3.07
251 257 4.517952 TCAATTTTTGCACGGACATCAT 57.482 36.364 0.00 0.00 0.00 2.45
417 424 1.747367 TGCCCGGCCTTACAATTCG 60.747 57.895 7.03 0.00 0.00 3.34
432 439 0.250727 TGGAGCAGGTTTAGTGTGCC 60.251 55.000 0.00 0.00 37.98 5.01
458 465 7.039993 GCATGGGAATAGGAAACGGTAAAATAT 60.040 37.037 0.00 0.00 0.00 1.28
501 508 1.014044 ACGGCTCATAACTGCACACG 61.014 55.000 0.00 0.00 0.00 4.49
513 520 3.740397 GCTTGCATGCACGGCTCA 61.740 61.111 27.41 11.48 0.00 4.26
539 546 1.246737 GCTTGCAGGCAAAGGCTAGT 61.247 55.000 16.98 0.00 40.87 2.57
584 591 1.632046 AACGCCATAAACAGCCGACG 61.632 55.000 0.00 0.00 0.00 5.12
587 594 1.070471 GCAAACGCCATAAACAGCCG 61.070 55.000 0.00 0.00 0.00 5.52
613 877 1.226211 CGCAGCAGCAGTTACATGC 60.226 57.895 0.82 0.00 46.88 4.06
614 878 1.426621 CCGCAGCAGCAGTTACATG 59.573 57.895 0.82 0.00 42.27 3.21
615 879 2.401766 GCCGCAGCAGCAGTTACAT 61.402 57.895 0.82 0.00 42.27 2.29
617 881 2.743928 AGCCGCAGCAGCAGTTAC 60.744 61.111 2.79 0.00 43.56 2.50
618 882 2.434884 GAGCCGCAGCAGCAGTTA 60.435 61.111 2.79 0.00 43.56 2.24
622 886 3.874807 TTAACGAGCCGCAGCAGCA 62.875 57.895 2.79 0.00 43.56 4.41
626 890 1.594760 GCTAAATTAACGAGCCGCAGC 60.595 52.381 0.00 0.00 40.32 5.25
635 899 6.043411 AGGCTCTGTTCTAGCTAAATTAACG 58.957 40.000 0.00 0.00 39.97 3.18
636 900 7.766738 AGAAGGCTCTGTTCTAGCTAAATTAAC 59.233 37.037 0.00 0.00 39.97 2.01
642 906 6.183360 CCAATAGAAGGCTCTGTTCTAGCTAA 60.183 42.308 0.00 0.00 39.34 3.09
660 937 3.700538 ACAGCTGAAATTGGCCAATAGA 58.299 40.909 30.84 16.17 0.00 1.98
701 979 0.036732 TAGGACCAAGGCAGTGCTTG 59.963 55.000 16.11 16.03 37.14 4.01
733 1011 2.721425 TTCGGGTTTATTAGGCCCAG 57.279 50.000 0.00 0.00 42.44 4.45
747 1025 1.620819 CATCTACTCCCTCCATTCGGG 59.379 57.143 0.00 0.00 43.38 5.14
751 1029 5.488919 TCTTTTGTCATCTACTCCCTCCATT 59.511 40.000 0.00 0.00 0.00 3.16
753 1031 4.425772 TCTTTTGTCATCTACTCCCTCCA 58.574 43.478 0.00 0.00 0.00 3.86
932 1211 5.832060 GGGGCAAAGATCAGTACTAGTACTA 59.168 44.000 30.34 20.09 43.98 1.82
933 1212 4.650131 GGGGCAAAGATCAGTACTAGTACT 59.350 45.833 26.61 26.61 46.52 2.73
934 1213 4.650131 AGGGGCAAAGATCAGTACTAGTAC 59.350 45.833 23.03 23.03 36.35 2.73
935 1214 4.649674 CAGGGGCAAAGATCAGTACTAGTA 59.350 45.833 0.00 0.00 0.00 1.82
936 1215 3.452627 CAGGGGCAAAGATCAGTACTAGT 59.547 47.826 0.00 0.00 0.00 2.57
937 1216 3.706594 TCAGGGGCAAAGATCAGTACTAG 59.293 47.826 0.00 0.00 0.00 2.57
971 1250 0.892755 TGTGTGGTCGTGTATCCCTC 59.107 55.000 0.00 0.00 0.00 4.30
999 1278 2.887568 GTCAGCGACGCCTCCATG 60.888 66.667 17.79 8.02 0.00 3.66
1290 1569 3.392595 CTCTACGGACACGACGGCC 62.393 68.421 0.00 0.00 44.60 6.13
1421 1700 4.876701 TGGTGACAAGACCACAGC 57.123 55.556 0.00 0.00 41.30 4.40
1570 1849 3.827898 CAGGCGTCGTCTCCTCCC 61.828 72.222 0.00 0.00 0.00 4.30
1676 1959 3.771216 AGCAACATCCATCCAAGAAACT 58.229 40.909 0.00 0.00 0.00 2.66
1680 1963 1.820519 GCAAGCAACATCCATCCAAGA 59.179 47.619 0.00 0.00 0.00 3.02
1981 2264 5.707242 ACATCGAAACTCTTGTCTAGACA 57.293 39.130 21.74 21.74 39.98 3.41
2074 2357 8.890718 CATATTCTCATCTCGCATATCCAAAAT 58.109 33.333 0.00 0.00 0.00 1.82
2133 2416 9.269453 GCTTTAGTTCAGTAAACCGGATATATT 57.731 33.333 9.46 0.00 38.76 1.28
2134 2417 8.648693 AGCTTTAGTTCAGTAAACCGGATATAT 58.351 33.333 9.46 0.00 38.76 0.86
2135 2418 7.924412 CAGCTTTAGTTCAGTAAACCGGATATA 59.076 37.037 9.46 0.00 38.76 0.86
2136 2419 6.761714 CAGCTTTAGTTCAGTAAACCGGATAT 59.238 38.462 9.46 0.00 38.76 1.63
2137 2420 6.071221 TCAGCTTTAGTTCAGTAAACCGGATA 60.071 38.462 9.46 0.00 38.76 2.59
2138 2421 4.935808 CAGCTTTAGTTCAGTAAACCGGAT 59.064 41.667 9.46 0.00 38.76 4.18
2139 2422 4.039488 TCAGCTTTAGTTCAGTAAACCGGA 59.961 41.667 9.46 0.00 38.76 5.14
2140 2423 4.312443 TCAGCTTTAGTTCAGTAAACCGG 58.688 43.478 0.00 0.00 38.76 5.28
2141 2424 5.917541 TTCAGCTTTAGTTCAGTAAACCG 57.082 39.130 0.00 0.00 38.76 4.44
2142 2425 6.402226 CGGATTCAGCTTTAGTTCAGTAAACC 60.402 42.308 0.00 0.00 38.76 3.27
2143 2426 6.402226 CCGGATTCAGCTTTAGTTCAGTAAAC 60.402 42.308 0.00 0.00 38.21 2.01
2178 2461 2.230940 CGTGCGGTAATCGAGGCTG 61.231 63.158 0.00 0.00 42.43 4.85
2200 2483 2.631428 GACGCGCAAAGCTCAACA 59.369 55.556 5.73 0.00 45.59 3.33
2352 2639 2.494471 ACATCAGACATTGTGCCATTGG 59.506 45.455 0.00 0.00 0.00 3.16
2353 2640 3.442625 AGACATCAGACATTGTGCCATTG 59.557 43.478 0.00 0.00 0.00 2.82
2354 2641 3.693807 AGACATCAGACATTGTGCCATT 58.306 40.909 0.00 0.00 0.00 3.16
2355 2642 3.361281 AGACATCAGACATTGTGCCAT 57.639 42.857 0.00 0.00 0.00 4.40
2356 2643 2.865119 AGACATCAGACATTGTGCCA 57.135 45.000 0.00 0.00 0.00 4.92
2357 2644 3.372206 GTGTAGACATCAGACATTGTGCC 59.628 47.826 0.00 0.00 0.00 5.01
2358 2645 3.996363 TGTGTAGACATCAGACATTGTGC 59.004 43.478 0.00 0.00 0.00 4.57
2359 2646 6.732531 AATGTGTAGACATCAGACATTGTG 57.267 37.500 5.89 0.00 42.30 3.33
2360 2647 6.372659 GGAAATGTGTAGACATCAGACATTGT 59.627 38.462 5.89 0.00 42.30 2.71
2361 2648 6.596888 AGGAAATGTGTAGACATCAGACATTG 59.403 38.462 5.89 0.00 42.30 2.82
2362 2649 6.715280 AGGAAATGTGTAGACATCAGACATT 58.285 36.000 5.89 0.00 42.30 2.71
2363 2650 6.305272 AGGAAATGTGTAGACATCAGACAT 57.695 37.500 5.89 0.00 42.30 3.06
2364 2651 5.745312 AGGAAATGTGTAGACATCAGACA 57.255 39.130 5.89 0.00 42.30 3.41
2365 2652 6.166279 TGAAGGAAATGTGTAGACATCAGAC 58.834 40.000 5.89 0.00 42.30 3.51
2366 2653 6.358974 TGAAGGAAATGTGTAGACATCAGA 57.641 37.500 5.89 0.00 42.30 3.27
2416 2703 6.544931 TCCATGCTTGAAGAATAAGATGGAAG 59.455 38.462 0.00 0.00 38.03 3.46
2516 2803 3.007074 TGATGCAACCAATCAAACATGCT 59.993 39.130 0.00 0.00 34.97 3.79
2603 2890 1.745087 CCGCCAAACTATGTGCAGAAT 59.255 47.619 0.00 0.00 0.00 2.40
2715 3002 2.444421 ACTCTTAATCGGGTCGAGTGT 58.556 47.619 0.47 0.00 39.91 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.